sallet_2.scaffold.fasta.s58.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold78
Parameters: 2 7 7 80 10 50 500
Length:  34215

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--98	26	3.8	26	100	0	196	42	19	19	18	1.89
1971--2225	84	3.0	84	98	0	492	19	22	29	28	1.98
2431--2496	33	2.0	33	90	0	105	27	19	25	27	1.99
6354--6410	23	2.6	23	91	5	91	45	19	29	5	1.72
6748--6788	9	4.3	9	87	6	55	34	60	0	4	1.18
7081--7129	25	2.0	24	100	0	89	32	36	20	8	1.82
7391--7504	17	6.9	17	81	11	130	35	40	14	9	1.78
7474--7575	24	4.2	24	85	12	127	32	43	14	9	1.79
7490--7540	11	4.6	11	75	18	52	33	45	13	7	1.73
9711--9775	12	5.2	12	78	10	58	10	21	33	33	1.88
9772--9804	15	2.1	16	88	5	50	6	27	27	39	1.80
11778--11817	15	2.7	15	88	7	55	20	20	27	32	1.97
11966--12140	20	8.6	20	87	3	251	17	17	25	40	1.91
11966--12136	41	4.2	41	93	1	281	18	17	24	39	1.91
11966--12140	61	2.9	61	87	3	271	17	17	25	40	1.91
13560--13611	27	1.9	27	92	0	86	25	32	34	7	1.84
13680--13706	12	2.2	12	100	0	54	18	51	14	14	1.76
13753--13791	12	3.2	12	96	0	69	7	5	53	33	1.51
14027--14129	12	8.6	12	92	0	161	39	18	39	1	1.62
14027--14150	12	10.3	12	88	3	124	39	20	37	3	1.69
14027--14150	24	5.2	24	89	1	142	39	20	37	3	1.69
14027--14150	36	3.4	36	87	2	160	39	20	37	3	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14119--14181	33	1.9	33	86	0	90	41	26	26	4	1.76
14289--14348	9	7.0	9	81	11	72	1	48	6	43	1.39
14289--14348	18	3.5	18	80	13	81	1	48	6	43	1.39
14311--14342	15	2.1	15	94	0	55	3	53	0	43	1.16
14302--14348	24	2.0	24	86	0	67	2	48	4	44	1.34
14964--14994	9	3.4	9	100	0	62	0	48	9	41	1.36
14961--15003	18	2.4	18	80	0	59	4	53	6	34	1.49
16237--16278	20	2.0	21	90	4	68	16	7	64	11	1.48
16534--16570	10	3.8	10	92	7	67	18	8	32	40	1.80
16631--16680	22	2.3	22	92	0	82	42	34	12	12	1.79
16631--16689	22	2.8	21	80	10	66	40	33	10	15	1.81
16676--16737	16	4.0	16	91	8	110	30	43	0	25	1.55
16678--16737	30	2.0	30	100	0	120	30	43	0	26	1.55
17935--18039	29	3.4	29	79	12	111	43	4	41	9	1.58
17902--18039	63	2.2	63	86	2	188	43	5	40	10	1.62
17902--18021	17	7.4	17	77	12	117	43	5	40	10	1.64
17955--18095	75	1.9	75	83	5	187	42	7	40	9	1.65
18509--18534	12	2.2	12	100	0	52	0	34	50	15	1.45
18838--18893	24	2.3	24	100	0	112	16	33	26	23	1.95
19402--19473	12	6.0	12	93	0	126	15	40	18	26	1.90
19677--19717	15	2.7	15	96	0	73	26	29	14	29	1.95
19966--19994	15	1.9	15	100	0	58	6	62	0	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20276--20333	9	6.8	9	86	11	86	13	20	32	32	1.92
21366--21390	12	2.1	12	100	0	50	36	24	32	8	1.84
24372--24496	66	1.9	66	85	3	171	20	16	29	33	1.95
24405--24499	33	2.9	32	85	6	136	20	17	30	31	1.96
29247--29286	12	3.3	12	100	0	80	32	22	37	7	1.82
33964--34014	16	3.2	16	77	0	57	23	56	0	19	1.42

Tables:   1

The End!