Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold78
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 34215
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:37 original size:26 final size:26
Alignment explanation
Indices: 1--98 Score: 196
Period size: 26 Copynumber: 3.8 Consensus size: 26
1 TAACCGCAAATGCTGAGAAAAGATTC
1 TAACCGCAAATGCTGAGAAAAGATTC
27 TAACCGCAAATGCTGAGAAAAGATTC
1 TAACCGCAAATGCTGAGAAAAGATTC
53 TAACCGCAAATGCTGAGAAAAGATTC
1 TAACCGCAAATGCTGAGAAAAGATTC
79 TAACCGCAAATGCTGAGAAA
1 TAACCGCAAATGCTGAGAAA
99 TTGATCTCCT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.18
Consensus pattern (26 bp):
TAACCGCAAATGCTGAGAAAAGATTC
Left flanking sequence: None
Right flanking sequence: Indices 99 -- 598
TTGATCTCCTCTCGAAAATGAACTCTCAAATTCCTATTTCCTTATTCTGAAATTTGCAAAAGAAT
GGTATACTTTCTCTGTGACGAGTCGATTGGATTCACACGATTATGAAGCTGAAAATATCATGTGA
AATGCTTCTCTCAATCTCCGTAGCATGCAGCAAAATGTCGTGATCTGTACCTCACTAGATAACGC
ACTGTTAAGCAGCGAGGGGGATTGGACAAAATATTTGGACATTCCGTGAACTTTTCCTGGCAGCG
TGAGGTTTTTCCTTGTAAGTCACTTCACATTCTGATGATTTGGCTGTTACTAAGCTAGTAGTCCC
TGGGGCGACATTGTGTGTGGTCTCACTAAAAACGGAGAATAAAAAGTGCCTTTCGTCAAACAGAT
CTTGTCGTAAAAGTCTACAATAATTAGAGTTGAATCCATTCTGTGCGAATTATTCAAAGGCTTTT
AAGACTTGTTTAACCAAACGTAGGAAGCGCTTCGAGCTCTTCATA
Found at i:2112 original size:84 final size:84
Alignment explanation
Indices: 1971--2225 Score: 492
Period size: 84 Copynumber: 3.0 Consensus size: 84
1961 ACGAAATCAG
*
1971 GCGAGGAGAATGAATGTACGTCGTCCCCCGAGTTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
1 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
2036 CCCTGTCTTCTCGAACGGT
66 CCCTGTCTTCTCGAACGGT
2055 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
1 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
2120 CCCTGTCTTCTCGAACGGT
66 CCCTGTCTTCTCGAACGGT
*
2139 GCGAGGAGAATGAATGTATGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
1 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
2204 CCCTGTCTTCTCGAACGGT
66 CCCTGTCTTCTCGAACGGT
2223 GCG
1 GCG
2226 GGGACCATGG
Statistics
Matches: 169, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 169 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (84 bp):
GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
CCCTGTCTTCTCGAACGGT
Left flanking sequence: Indices 1471 -- 1970
TTTGAATTGCGGGAACCTCTGCGAAGAAGAGCACGGATGTAGACAGTTCCTTCCATATCCAATTC
AATGTGATACTCGTTATTGAAGGTATCGCCATAACACTCGATAAAGTAGTCTGTGATCTCTTCAA
CACATTTGTATGGGTCTCTTCGAGGAATAGAGGCAAGGACAAGTGACAGGAGTGCCATGATCCCC
AACCTCATGTTGATGATTTTCAGAGGCAGATGTAACGGATTGCGTGATAAGTATTACAGTGGGTA
TTTCTTTTTCGGATAACCTGCACGTTTCCAGAATTCACAGCTATTCATGTCAAATTATGACTCAT
TGGTTATTCAGGTGGTTTATTTATCTCGTTGAAACACGCTGTAGCTGGGTTCAACGGACGCAAGC
GGCTCAATTTGAGTCATTTGTTGAGGAGCTGAATGGTATCCTTCGGTAGGAAAGCCTATAAATGC
TATTTTCGCTCATCAGTCATTCAGCTCGTTGGGTAACGAAATCAG
Right flanking sequence: Indices 2226 -- 2725
GGGACCATGGATATAGGTAGTCTCTTGAACATCCTCGAAGGGGGAATGAATGTAGGTCGTCCCAT
GAAAAACCTCCTCCCGAGGGGAGTGAAGGTGGGTCGTTTCATGATCGCGTCGGGTACCGTTCTCG
GGACAGTCTCTCTTGAAATGACCAGGCTCACCACATTTGAAGCACTTCTTCGGACGTTTCGGCTT
CCGGTTTTTTGGTGGTGGTGAGTCATAAATATCCACATGCTTCGGTGCTGGAGAGTCAAAAATAT
CCACATGCTTCAGGTACCATTTTATGAGACAACCTATCAGGGGCTCTAATCCCTCAAAGCTATCC
ACCATGGCGTCTGCTTCTTCTATAGACATTTTAAGAAGGGGTATTACAGCCATTATTTCCCCGCA
GTCACTCAAGAACTCCCGCTTCAGTAAAGCCAACCCGCGTCCATAGTAGTACAGATCGGTTTTGA
AGTCAATCACAGGTACACAGGTCAGTGTGTAAACCATCGTTTGCA
Found at i:2484 original size:33 final size:33
Alignment explanation
Indices: 2431--2496 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
2421 CCGGTTTTTT
* * *
2431 GGTGGTGGTGAGTCATAAATATCCACATGCTTC
1 GGTGCTGGAGAGTCAAAAATATCCACATGCTTC
2464 GGTGCTGGAGAGTCAAAAATATCCACATGCTTC
1 GGTGCTGGAGAGTCAAAAATATCCACATGCTTC
2497 AGGTACCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (33 bp):
GGTGCTGGAGAGTCAAAAATATCCACATGCTTC
Left flanking sequence: Indices 1931 -- 2430
TCGCTCATCAGTCATTCAGCTCGTTGGGTAACGAAATCAGGCGAGGAGAATGAATGTACGTCGTC
CCCCGAGTTATTTCAGTTTCTCGCGAGGGATGAGTGTTGACCCTGTCTTCTCGAACGGTGCGAGG
AGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAGGGATGAGTGTTGACCCTGT
CTTCTCGAACGGTGCGAGGAGAATGAATGTATGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAG
GGATGAGTGTTGACCCTGTCTTCTCGAACGGTGCGGGGACCATGGATATAGGTAGTCTCTTGAAC
ATCCTCGAAGGGGGAATGAATGTAGGTCGTCCCATGAAAAACCTCCTCCCGAGGGGAGTGAAGGT
GGGTCGTTTCATGATCGCGTCGGGTACCGTTCTCGGGACAGTCTCTCTTGAAATGACCAGGCTCA
CCACATTTGAAGCACTTCTTCGGACGTTTCGGCTTCCGGTTTTTT
Right flanking sequence: Indices 2497 -- 2996
AGGTACCATTTTATGAGACAACCTATCAGGGGCTCTAATCCCTCAAAGCTATCCACCATGGCGTC
TGCTTCTTCTATAGACATTTTAAGAAGGGGTATTACAGCCATTATTTCCCCGCAGTCACTCAAGA
ACTCCCGCTTCAGTAAAGCCAACCCGCGTCCATAGTAGTACAGATCGGTTTTGAAGTCAATCACA
GGTACACAGGTCAGTGTGTAAACCATCGTTTGCACTTGCTCGGCAAGATTGCGTTTGACATAGGT
ATCAAAAAGGTGGTATACTGTCTCCGCCAACGATGGCTTGGTAATTTCAAAGTTGGAGCCCCAAC
ATTTAGACTGTTTGCACCACAAAATGAACATCTGGTTCATTTGGAATAACATCTTCCTCGTTTCA
TTGGCACCATAAACGATGCCTTTGTCGTTTGCCAACTTGATGTCCCACTCAGGGGTGTGATCAGG
AGCTAGGTCAATCCACCGCAGAGCCGCGTCACAAAGTTCTGCCAC
Found at i:6417 original size:23 final size:23
Alignment explanation
Indices: 6354--6410 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
6344 GAAGTGGGTG
*
6354 GACGACAGTAGACAAC--GAGTA
1 GACGACAGAAGACAACGAGAGTA
6375 GACGACAGAAGACAACGAGAGTA
1 GACGACAGAAGACAACGAGAGTA
6398 GACGACAGAAGAC
1 GACGACAGAAGAC
6411 GGGGAGATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
21 15 0.45
23 18 0.55
ACGTcount: A:0.46, C:0.19, G:0.30, T:0.05
Consensus pattern (23 bp):
GACGACAGAAGACAACGAGAGTA
Left flanking sequence: Indices 5854 -- 6353
GGGAACAGCGGGTAGCTCTTGGTTATCAACTGGTTGTTGACGATTTTGTAGTTCTGGCCCGGTAC
TGAGTACTTGGCGTTGTTGCCGTAGGGCCGGATGAGCTGGAGGGTCAGCACCTCGTCGCACTCAA
CGGCAGTTTGCACAAGACGGTCGCATCCGGGAGAGGCGTGTACGGCAATAAGGGGCAGGTAGTGG
TGGTGTAACAAGTGTTGTCGACACGTGTACGGGTCGAGGCCGAACGGGTAGTCCATGGGAGACGG
AGGACTGTGGTACACGGTGGTGTTTGGTGTGGGCACTGAGCTGTTTGGAGGTGTGCGGTCGGTGT
GGGCTCAAAACCAATGGGGGAGACGGTAAGGTGGGGGATGAAAAGACGAAGGGTGGTGGTGAAGA
GCATTGCTGGGGTATCAAAGGCTAAGGTTGTATGCTTGGTGACAGTGAGGAGATGGGCTTTCTAA
GGTGGTTTGTAAAGGTAGCAATGAACGAAGAATTAGAAGTGGGTG
Right flanking sequence: Indices 6411 -- 6910
GGGGAGATCAGGGGTGAACCATGCGTAAACAATGTGTGAACAATGTGTGTCAAAGATCCAACGTA
CCACTATCCCCTTTAAACTTTTCCATTCAGTTTTCCAAATATCTTACGGAATTTGGGCGACCATC
TACTTTAACGAGTCGGAAACTCGTAGACCGAGACGCCTGTCTTGTTTGAGCGCTGGGTGAGGACG
TTCTCCACCTGTAAACGAGCAACTCTTCGGGTCACGAGACCATCATTCTTAGTCTACATTCTGAG
AGAAGATTCTCTCGTTTTGTATTGGTGTAGACTACTCAACTACCCATCCAAACAACCACTCAAAA
GCTACCTATCCAACCCACACCTAACCCACACCATCCACACCACCCACACCACCGCCTCGCCTCAC
CCGCCCATCTCCTTCTCATCTCTTCCTCCAGCCACACCCATTGCGAGCCCCGTCCTCTAGCCGAG
CCAGCGCGTGGTGTGCACACAACCTGGTGTTTACATCCTGTACAT
Found at i:6775 original size:9 final size:9
Alignment explanation
Indices: 6748--6788 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
6738 TACCTATCCA
6748 ACCCACACC
1 ACCCACACC
6757 TAACCCACACC
1 --ACCCACACC
*
6768 ATCCACACC
1 ACCCACACC
6777 ACCCACACC
1 ACCCACACC
6786 ACC
1 ACC
6789 GCCTCGCCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 19 0.68
11 9 0.32
ACGTcount: A:0.34, C:0.61, G:0.00, T:0.05
Consensus pattern (9 bp):
ACCCACACC
Left flanking sequence: Indices 6248 -- 6747
TGCTGGGGTATCAAAGGCTAAGGTTGTATGCTTGGTGACAGTGAGGAGATGGGCTTTCTAAGGTG
GTTTGTAAAGGTAGCAATGAACGAAGAATTAGAAGTGGGTGGACGACAGTAGACAACGAGTAGAC
GACAGAAGACAACGAGAGTAGACGACAGAAGACGGGGAGATCAGGGGTGAACCATGCGTAAACAA
TGTGTGAACAATGTGTGTCAAAGATCCAACGTACCACTATCCCCTTTAAACTTTTCCATTCAGTT
TTCCAAATATCTTACGGAATTTGGGCGACCATCTACTTTAACGAGTCGGAAACTCGTAGACCGAG
ACGCCTGTCTTGTTTGAGCGCTGGGTGAGGACGTTCTCCACCTGTAAACGAGCAACTCTTCGGGT
CACGAGACCATCATTCTTAGTCTACATTCTGAGAGAAGATTCTCTCGTTTTGTATTGGTGTAGAC
TACTCAACTACCCATCCAAACAACCACTCAAAAGCTACCTATCCA
Right flanking sequence: Indices 6789 -- 7288
GCCTCGCCTCACCCGCCCATCTCCTTCTCATCTCTTCCTCCAGCCACACCCATTGCGAGCCCCGT
CCTCTAGCCGAGCCAGCGCGTGGTGTGCACACAACCTGGTGTTTACATCCTGTACATGGCCCCAC
GGATCAGCTGGTCACTGGAACCAACCCCCGATTCCAGCAGACCCTGGGAGACAACCCCCCATGTA
AACCACACCACTAAAACCACCCAGCCCCCATAACCCCCCCACCGCGTTTTCTAACCTAAATTACC
CCGTGTCACCGGGTAAACCCCCCATTCCCTCGCTACCGCCTCGCGAGAAAAAACGCNCTACCGCC
TCGCGAGAAAAAACGCACGATTAAATCCAAACACTTCATTCCCGTTGCAACCTGTCCCTCGCTAG
CCGGAACACTGTCGGCGCCCCCAGGAGAAACGACGGTATTTGTTGGAGCAGCTCCAGTTAGCACC
CTTACGAGTCTTTTTTGCTCAAACCTTTTCACGTTTCGTGTTCAC
Found at i:7109 original size:25 final size:24
Alignment explanation
Indices: 7081--7129 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
7071 CATTCCCTCG
7081 CTACCGCCTCGCGAGAAAAAACGC
1 CTACCGCCTCGCGAGAAAAAACGC
7105 NCTACCGCCTCGCGAGAAAAAACGC
1 -CTACCGCCTCGCGAGAAAAAACGC
7130 ACGATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.37, G:0.20, T:0.08
Consensus pattern (24 bp):
CTACCGCCTCGCGAGAAAAAACGC
Left flanking sequence: Indices 6581 -- 7080
CTTGTTTGAGCGCTGGGTGAGGACGTTCTCCACCTGTAAACGAGCAACTCTTCGGGTCACGAGAC
CATCATTCTTAGTCTACATTCTGAGAGAAGATTCTCTCGTTTTGTATTGGTGTAGACTACTCAAC
TACCCATCCAAACAACCACTCAAAAGCTACCTATCCAACCCACACCTAACCCACACCATCCACAC
CACCCACACCACCGCCTCGCCTCACCCGCCCATCTCCTTCTCATCTCTTCCTCCAGCCACACCCA
TTGCGAGCCCCGTCCTCTAGCCGAGCCAGCGCGTGGTGTGCACACAACCTGGTGTTTACATCCTG
TACATGGCCCCACGGATCAGCTGGTCACTGGAACCAACCCCCGATTCCAGCAGACCCTGGGAGAC
AACCCCCCATGTAAACCACACCACTAAAACCACCCAGCCCCCATAACCCCCCCACCGCGTTTTCT
AACCTAAATTACCCCGTGTCACCGGGTAAACCCCCCATTCCCTCG
Right flanking sequence: Indices 7130 -- 7629
ACGATTAAATCCAAACACTTCATTCCCGTTGCAACCTGTCCCTCGCTAGCCGGAACACTGTCGGC
GCCCCCAGGAGAAACGACGGTATTTGTTGGAGCAGCTCCAGTTAGCACCCTTACGAGTCTTTTTT
GCTCAAACCTTTTCACGTTTCGTGTTCACATACGCGACTGGGACACTAACGCGGCCAGCCTCAGT
GCATCTTGAGACGCTAAGGACGTGAACCACCACTACGGCACGTTCCACACGCTCCACACCAGTGC
AACACCCAGTGCAAACACACCCAGTGCACACACAACACCTAGTGCACACACACACCTAGTGCACA
CACACACTCAGTGCACGAACACACCCAGTGTACAGACACCCAGTGCACACCCAGTACAGACACCC
AGTGCACCCAGTACACACCCACCCAGTGCACACTCAGTACACACACCCAGTGCACATCCACAACC
TAACCACACCCACATACCATGCTTCCGAGGCTACTATTATCCCTA
Found at i:7446 original size:17 final size:17
Alignment explanation
Indices: 7391--7504 Score: 130
Period size: 17 Copynumber: 6.9 Consensus size: 17
7381 CACCAGTGCA
7391 ACACCCAGTGCA-A-AC
1 ACACCCAGTGCACACAC
7406 ACACCCAGTGCACACAC
1 ACACCCAGTGCACACAC
*
7423 AACACCTAGTGCACACAC
1 -ACACCCAGTGCACACAC
*
7441 ACACCTAGTGCACACAC
1 ACACCCAGTGCACACAC
*
7458 ACACTCAGTGCACGA-AC
1 ACACCCAGTGCAC-ACAC
* *
7475 ACACCCAGTG--TACAG
1 ACACCCAGTGCACACAC
7490 ACACCCAGTGCACAC
1 ACACCCAGTGCACAC
7505 CCAGTACAGA
Statistics
Matches: 85, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
14 1 0.01
15 23 0.27
16 1 0.01
17 43 0.51
18 17 0.20
ACGTcount: A:0.36, C:0.40, G:0.14, T:0.10
Consensus pattern (17 bp):
ACACCCAGTGCACACAC
Left flanking sequence: Indices 6891 -- 7390
GGTGTTTACATCCTGTACATGGCCCCACGGATCAGCTGGTCACTGGAACCAACCCCCGATTCCAG
CAGACCCTGGGAGACAACCCCCCATGTAAACCACACCACTAAAACCACCCAGCCCCCATAACCCC
CCCACCGCGTTTTCTAACCTAAATTACCCCGTGTCACCGGGTAAACCCCCCATTCCCTCGCTACC
GCCTCGCGAGAAAAAACGCNCTACCGCCTCGCGAGAAAAAACGCACGATTAAATCCAAACACTTC
ATTCCCGTTGCAACCTGTCCCTCGCTAGCCGGAACACTGTCGGCGCCCCCAGGAGAAACGACGGT
ATTTGTTGGAGCAGCTCCAGTTAGCACCCTTACGAGTCTTTTTTGCTCAAACCTTTTCACGTTTC
GTGTTCACATACGCGACTGGGACACTAACGCGGCCAGCCTCAGTGCATCTTGAGACGCTAAGGAC
GTGAACCACCACTACGGCACGTTCCACACGCTCCACACCAGTGCA
Right flanking sequence: Indices 7505 -- 8004
CCAGTACAGACACCCAGTGCACCCAGTACACACCCACCCAGTGCACACTCAGTACACACACCCAG
TGCACATCCACAACCTAACCACACCCACATACCATGCTTCCGAGGCTACTATTATCCCTAGTGGC
CGCCTCGCTCGCGTCCGCCGCCGACATCGTCCACCCCGCGTTCGCGTTCGACTCGTTTGGCGGCC
GGCTCGGGCTCTTGGGCGACTTTGACCTGCTCTCGTCGTTCGACACCGTCAACCAGACCCAGGCC
CAGGACGGGTCGGGCGACCACCTCTTCCTCTACGACTCGTCGTCGCTGCGGGTGAGCGCAGCGGG
CCACGTCAACGGCATCATCTCCGACGTCCAGCCCATGGGCGACGAGTCGGTGGTGGTCAACGGCA
ACATCACCGAGGTCAACGGGGACCGCGTCCAGGCCCCGTTCATCTACAACTGGAAAAACAAGACC
GCGCGCGCCCTTCTCCCCTCCACAAACAAGCGCGACGACTCGTCT
Found at i:7516 original size:24 final size:24
Alignment explanation
Indices: 7474--7575 Score: 127
Period size: 24 Copynumber: 4.2 Consensus size: 24
7464 AGTGCACGAA
*
7474 CACACCCAGTGTACAGACACCCAGTG
1 CACACCCA--GTACACACACCCAGTG
*
7500 CACACCCAGTACAGACACCCAGTG
1 CACACCCAGTACACACACCCAGTG
7524 --CACCCAGTACACACCCACCCAGTG
1 CACACCCAGTACACA--CACCCAGTG
*
7548 CACACTCAGTACACACACCCAGTG
1 CACACCCAGTACACACACCCAGTG
7572 CACA
1 CACA
7576 TCCACAACCT
Statistics
Matches: 70, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
22 12 0.17
24 38 0.54
26 20 0.29
ACGTcount: A:0.32, C:0.43, G:0.15, T:0.10
Consensus pattern (24 bp):
CACACCCAGTACACACACCCAGTG
Left flanking sequence: Indices 6974 -- 7473
CCCCCATGTAAACCACACCACTAAAACCACCCAGCCCCCATAACCCCCCCACCGCGTTTTCTAAC
CTAAATTACCCCGTGTCACCGGGTAAACCCCCCATTCCCTCGCTACCGCCTCGCGAGAAAAAACG
CNCTACCGCCTCGCGAGAAAAAACGCACGATTAAATCCAAACACTTCATTCCCGTTGCAACCTGT
CCCTCGCTAGCCGGAACACTGTCGGCGCCCCCAGGAGAAACGACGGTATTTGTTGGAGCAGCTCC
AGTTAGCACCCTTACGAGTCTTTTTTGCTCAAACCTTTTCACGTTTCGTGTTCACATACGCGACT
GGGACACTAACGCGGCCAGCCTCAGTGCATCTTGAGACGCTAAGGACGTGAACCACCACTACGGC
ACGTTCCACACGCTCCACACCAGTGCAACACCCAGTGCAAACACACCCAGTGCACACACAACACC
TAGTGCACACACACACCTAGTGCACACACACACTCAGTGCACGAA
Right flanking sequence: Indices 7576 -- 8075
TCCACAACCTAACCACACCCACATACCATGCTTCCGAGGCTACTATTATCCCTAGTGGCCGCCTC
GCTCGCGTCCGCCGCCGACATCGTCCACCCCGCGTTCGCGTTCGACTCGTTTGGCGGCCGGCTCG
GGCTCTTGGGCGACTTTGACCTGCTCTCGTCGTTCGACACCGTCAACCAGACCCAGGCCCAGGAC
GGGTCGGGCGACCACCTCTTCCTCTACGACTCGTCGTCGCTGCGGGTGAGCGCAGCGGGCCACGT
CAACGGCATCATCTCCGACGTCCAGCCCATGGGCGACGAGTCGGTGGTGGTCAACGGCAACATCA
CCGAGGTCAACGGGGACCGCGTCCAGGCCCCGTTCATCTACAACTGGAAAAACAAGACCGCGCGC
GCCCTTCTCCCCTCCACAAACAAGCGCGACGACTCGTCTCTCAAGGGCGAGGTGTCCACCTTCTT
GGTGGACGGCGACCTCATCTACCTCGGCGGAGACTTCGAGTTCAA
Found at i:7575 original size:11 final size:11
Alignment explanation
Indices: 7490--7540 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
7480 CAGTGTACAG
*
7490 ACACCCAGTGC
1 ACACCCAGTAC
7501 ACACCCAGTAC
1 ACACCCAGTAC
7512 AGACACCCAGT--
1 --ACACCCAGTAC
*
7523 GCACCCAGTAC
1 ACACCCAGTAC
7534 ACACCCA
1 ACACCCA
7541 CCCAGTGCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
9 8 0.24
11 16 0.48
13 9 0.27
ACGTcount: A:0.33, C:0.45, G:0.14, T:0.08
Consensus pattern (11 bp):
ACACCCAGTAC
Left flanking sequence: Indices 6990 -- 7489
ACCACTAAAACCACCCAGCCCCCATAACCCCCCCACCGCGTTTTCTAACCTAAATTACCCCGTGT
CACCGGGTAAACCCCCCATTCCCTCGCTACCGCCTCGCGAGAAAAAACGCNCTACCGCCTCGCGA
GAAAAAACGCACGATTAAATCCAAACACTTCATTCCCGTTGCAACCTGTCCCTCGCTAGCCGGAA
CACTGTCGGCGCCCCCAGGAGAAACGACGGTATTTGTTGGAGCAGCTCCAGTTAGCACCCTTACG
AGTCTTTTTTGCTCAAACCTTTTCACGTTTCGTGTTCACATACGCGACTGGGACACTAACGCGGC
CAGCCTCAGTGCATCTTGAGACGCTAAGGACGTGAACCACCACTACGGCACGTTCCACACGCTCC
ACACCAGTGCAACACCCAGTGCAAACACACCCAGTGCACACACAACACCTAGTGCACACACACAC
CTAGTGCACACACACACTCAGTGCACGAACACACCCAGTGTACAG
Right flanking sequence: Indices 7541 -- 8040
CCCAGTGCACACTCAGTACACACACCCAGTGCACATCCACAACCTAACCACACCCACATACCATG
CTTCCGAGGCTACTATTATCCCTAGTGGCCGCCTCGCTCGCGTCCGCCGCCGACATCGTCCACCC
CGCGTTCGCGTTCGACTCGTTTGGCGGCCGGCTCGGGCTCTTGGGCGACTTTGACCTGCTCTCGT
CGTTCGACACCGTCAACCAGACCCAGGCCCAGGACGGGTCGGGCGACCACCTCTTCCTCTACGAC
TCGTCGTCGCTGCGGGTGAGCGCAGCGGGCCACGTCAACGGCATCATCTCCGACGTCCAGCCCAT
GGGCGACGAGTCGGTGGTGGTCAACGGCAACATCACCGAGGTCAACGGGGACCGCGTCCAGGCCC
CGTTCATCTACAACTGGAAAAACAAGACCGCGCGCGCCCTTCTCCCCTCCACAAACAAGCGCGAC
GACTCGTCTCTCAAGGGCGAGGTGTCCACCTTCTTGGTGGACGGC
Found at i:9728 original size:12 final size:12
Alignment explanation
Indices: 9711--9775 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
9701 ACCAGGCTGC
9711 TGGTGACCAGTT
1 TGGTGACCAGTT
9723 TGGTGACCAGTT
1 TGGTGACCAGTT
* * *
9735 TGCTGGCCCGTT
1 TGGTGACCAGTT
* *
9747 TGCTGGCCAGTTT
1 TGGTGACCAG-TT
9760 GCTGGTGACCAGTT
1 --TGGTGACCAGTT
9774 TG
1 TG
9776 AGCTTGCTGC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
12 32 0.73
13 2 0.05
14 2 0.05
15 8 0.18
ACGTcount: A:0.11, C:0.22, G:0.34, T:0.34
Consensus pattern (12 bp):
TGGTGACCAGTT
Left flanking sequence: Indices 9211 -- 9710
TACCACGGCCACTTGGACGGCGACCACGAGTACCGGGTGGAGATGAGCTACGTGGGCCAGGTGAC
GCCCGGGACGGAGCCGTTTGTGGTGGCGGACCGGTTGCTGGTGCTCACGGTGAGCATCGACGACG
ACCAGCGCACGGAGAACGAGGCCGGCAACGGCACGTCGTTCCGGCTCAACCGCACGGTGACGGGC
GGGGTGGCGCGGGTGAAGCTCAACGGGTTGTTTGAGTACTCGCTCGCCAACTTCTCGGACTTTGA
CGCCGCCAACTTGACCCGTGGCGACTACGTGGGCAACTCGCTGATCAACTTGCTCTCGGGGAGGT
TGCCTGAGGGGGCCAACGTGCTGCAGATTGCCACCAGCGCGTCCGGGATGGTGGTGCTTGGCGAC
AACCTCGGCTCCGAGGTGCTTTCTTTTGCGAAGAAGGGCTACAACTCCACGGGCGGCGAGGCGTT
GGTGCTGGTGTTGGACGGTAAGTTAGCGCGTAGAAACCAGGCTGC
Right flanking sequence: Indices 9776 -- 10275
AGCTTGCTGCCTTTGAGCTCGCTGGCCTTGACGGTAAGCTAGTCCGCAGGGACCAGTTTGAGCTT
GCTGGGGCCCAGTTCGACGGCAAGCCCTCCAACGTGTTTGCTGCCGGCTCGCAGTGGGTGTTCTT
GGGCAACTTTTCCGTGGGCAACTTCTCCAACGTGGCCGTGTACGACACCGACAAGAAGGCGTGGA
AGGGGCTCAAGCAGGCCCCCGACGCGGTGTACACCCAGTTTGCCAACTCCACCATCGACGACACC
GAGTACTGGGTGTTTTCCAACGCAAAGAACGACTACTTGCAAGTGGAGCCCAAGGACTTGGTCAG
CGCTCCTAACCTGAACGACAAGCGGGCGGAGCGGGCGTTGGAGTCGGAAGCCCTTGCCAAGCGAC
CTTCTCTCTTCAAACGTGCGTCGTCGTCGTCGAAACCCGACCTCCGGGTGCGGCTGGCGGTGCCC
GTGCTGGACTCCCAGCAGCTCCTCTCGGGCTCGGGCTTCAGCATC
Found at i:9790 original size:15 final size:16
Alignment explanation
Indices: 9772--9804 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
9762 TGGTGACCAG
*
9772 TTTGAGCTTGCT-GCC
1 TTTGAGCTCGCTGGCC
9787 TTTGAGCTCGCTGGCC
1 TTTGAGCTCGCTGGCC
9803 TT
1 TT
9805 GACGGTAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.06, C:0.27, G:0.27, T:0.39
Consensus pattern (16 bp):
TTTGAGCTCGCTGGCC
Left flanking sequence: Indices 9272 -- 9771
TGACGCCCGGGACGGAGCCGTTTGTGGTGGCGGACCGGTTGCTGGTGCTCACGGTGAGCATCGAC
GACGACCAGCGCACGGAGAACGAGGCCGGCAACGGCACGTCGTTCCGGCTCAACCGCACGGTGAC
GGGCGGGGTGGCGCGGGTGAAGCTCAACGGGTTGTTTGAGTACTCGCTCGCCAACTTCTCGGACT
TTGACGCCGCCAACTTGACCCGTGGCGACTACGTGGGCAACTCGCTGATCAACTTGCTCTCGGGG
AGGTTGCCTGAGGGGGCCAACGTGCTGCAGATTGCCACCAGCGCGTCCGGGATGGTGGTGCTTGG
CGACAACCTCGGCTCCGAGGTGCTTTCTTTTGCGAAGAAGGGCTACAACTCCACGGGCGGCGAGG
CGTTGGTGCTGGTGTTGGACGGTAAGTTAGCGCGTAGAAACCAGGCTGCTGGTGACCAGTTTGGT
GACCAGTTTGCTGGCCCGTTTGCTGGCCAGTTTGCTGGTGACCAG
Right flanking sequence: Indices 9805 -- 10304
GACGGTAAGCTAGTCCGCAGGGACCAGTTTGAGCTTGCTGGGGCCCAGTTCGACGGCAAGCCCTC
CAACGTGTTTGCTGCCGGCTCGCAGTGGGTGTTCTTGGGCAACTTTTCCGTGGGCAACTTCTCCA
ACGTGGCCGTGTACGACACCGACAAGAAGGCGTGGAAGGGGCTCAAGCAGGCCCCCGACGCGGTG
TACACCCAGTTTGCCAACTCCACCATCGACGACACCGAGTACTGGGTGTTTTCCAACGCAAAGAA
CGACTACTTGCAAGTGGAGCCCAAGGACTTGGTCAGCGCTCCTAACCTGAACGACAAGCGGGCGG
AGCGGGCGTTGGAGTCGGAAGCCCTTGCCAAGCGACCTTCTCTCTTCAAACGTGCGTCGTCGTCG
TCGAAACCCGACCTCCGGGTGCGGCTGGCGGTGCCCGTGCTGGACTCCCAGCAGCTCCTCTCGGG
CTCGGGCTTCAGCATCGCCGACTACTACGGGCGGGCCCAGGCGTA
Found at i:11798 original size:15 final size:15
Alignment explanation
Indices: 11778--11817 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
11768 AACCAAATGC
*
11778 GGTAGCGATCTTA-TT
1 GGTAGCCATC-TAGTT
11793 GGTAGCCATCTAGTT
1 GGTAGCCATCTAGTT
11808 GGTAGCCATC
1 GGTAGCCATC
11818 GAATTAAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 2 0.09
15 21 0.91
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (15 bp):
GGTAGCCATCTAGTT
Left flanking sequence: Indices 11278 -- 11777
GGGTCTGCGTGGGTTCCCCACGTCGCTGCGGGGCTCAACGGGTCTGCGGGCTCGGTCAAGTCGCT
CCTCTTGGACGACCGCCACCTGTTCCTCGACAACAAGCTCTTGGACAAGCTGGGGAAGCTCCTGG
TGGGTAAGGTGGTGGGCATTTCGCTTGCGTGTGCCCTCGGGTCGACAACGTTGCTTGGGCTCCTC
TACTTGGTGCCGTACCTCGTGCTCTTCCGCAAGCAGCTCGACGGAAACTACTACGACCACCCGGA
CCAGCGCATCGACGAGAAGGAGATGATGGACGCCGTGAACCCGGACGACTTGTTGCACGAGATCG
ACTTGCACCGGCCGCCGAACTAATTTTTATGGATTTGAATAGAGAATATATGTAATAGGAATGAG
CAGAGGGTGTGGTGTTGCTACGTGCCAGCATGTCAGGGCAACAAGCTAATTTGATGTGACTGGTT
CCATAGTTGGCTCCCATATACCTGGTTACACTCTTAACCAAATGC
Right flanking sequence: Indices 11818 -- 12317
GAATTAAGAGGTAGTTACAGGGACGTGAACCTGACCATCACGCAACCTACATTCTGGATCTTTTA
CACTATATAGAATAGAGTCTACCGATTTTTGGGATCTCCATTTAATTCCATAACGCATTTCATAC
CCTTCAAAACATAATCTTTGATGGACTGGTGCTAATCTCTGATGGACTGGTTCTATTTCTGATGG
ACTAGTTCTATTTCTGATGGACTGGTTCTATTTCTGATGGACCGGTTCTAATCTCTGATGGACTG
GTTCTATTTCTGATGGACCGGTTCTAATCTCTGATGGACTAGTTCTATTTCTGATGGACTGGTCC
CTTTGTAGATTCATTGTGCATTGATGGCTGCGTAATATTCGTAATCTATTGTTAGCCTTGCCAAG
CCTACTCATAACCACCACGAGGGCACTCGCCAAAATGGGAATACGAATATACGAGGTGAGTATAT
AGATGTAGAAAGTCCGAGGCATAAACTATGCTCTACAACTACACC
Found at i:12010 original size:20 final size:20
Alignment explanation
Indices: 11966--12140 Score: 251
Period size: 20 Copynumber: 8.6 Consensus size: 20
11956 ACATAATCTT
* *
11966 TGATGGACTGGTGCTAATCTC
1 TGATGGACTGGTTCT-ATTTC
11987 TGATGGACTGGTTCTATTTC
1 TGATGGACTGGTTCTATTTC
*
12007 TGATGGACTAGTTCTATTTC
1 TGATGGACTGGTTCTATTTC
12027 TGATGGACTGGTTCTATTTC
1 TGATGGACTGGTTCTATTTC
* *
12047 TGATGGACCGGTTCTAATCTC
1 TGATGGACTGGTTCT-ATTTC
12068 TGATGGACTGGTTCTATTTC
1 TGATGGACTGGTTCTATTTC
* *
12088 TGATGGACCGGTTCTAATCTC
1 TGATGGACTGGTTCT-ATTTC
*
12109 TGATGGACTAGTTCTATTTC
1 TGATGGACTGGTTCTATTTC
12129 TGATGGACTGGT
1 TGATGGACTGGT
12141 CCCTTTGTAG
Statistics
Matches: 138, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
20 89 0.64
21 49 0.36
ACGTcount: A:0.18, C:0.17, G:0.25, T:0.40
Consensus pattern (20 bp):
TGATGGACTGGTTCTATTTC
Left flanking sequence: Indices 11466 -- 11965
GCTCCTCTACTTGGTGCCGTACCTCGTGCTCTTCCGCAAGCAGCTCGACGGAAACTACTACGACC
ACCCGGACCAGCGCATCGACGAGAAGGAGATGATGGACGCCGTGAACCCGGACGACTTGTTGCAC
GAGATCGACTTGCACCGGCCGCCGAACTAATTTTTATGGATTTGAATAGAGAATATATGTAATAG
GAATGAGCAGAGGGTGTGGTGTTGCTACGTGCCAGCATGTCAGGGCAACAAGCTAATTTGATGTG
ACTGGTTCCATAGTTGGCTCCCATATACCTGGTTACACTCTTAACCAAATGCGGTAGCGATCTTA
TTGGTAGCCATCTAGTTGGTAGCCATCGAATTAAGAGGTAGTTACAGGGACGTGAACCTGACCAT
CACGCAACCTACATTCTGGATCTTTTACACTATATAGAATAGAGTCTACCGATTTTTGGGATCTC
CATTTAATTCCATAACGCATTTCATACCCTTCAAAACATAATCTT
Right flanking sequence: Indices 12141 -- 12640
CCCTTTGTAGATTCATTGTGCATTGATGGCTGCGTAATATTCGTAATCTATTGTTAGCCTTGCCA
AGCCTACTCATAACCACCACGAGGGCACTCGCCAAAATGGGAATACGAATATACGAGGTGAGTAT
ATAGATGTAGAAAGTCCGAGGCATAAACTATGCTCTACAACTACACCACCGACCATGTCCCGAGC
AAGTACCAGATCTACTGGCTGAGTCCGAGCTACTGCGCGACCCTGATGTATTCCTACAATTGGCC
CCAGCTCAACCTCAACGGGTCCACCATCGTTTGCGCCACTCCAATCACAAAGTACGATGAGGACA
TACGGAGGTTCCTCATTGTGGAAACCGTCGTCGACGACCTGTCGTTTTCGGGGTTTGTTTCCGCC
GAAGCGAGAAACGAGTCCTACTTTAATCGCTGTAACTACCGTTGTAAGTCTGCTGAATTCGTGAA
CCACTCGGAGTACTGCCTCTACCTGGCCGCCGACTACGGGGTGTG
Found at i:12082 original size:41 final size:41
Alignment explanation
Indices: 11966--12136 Score: 281
Period size: 41 Copynumber: 4.2 Consensus size: 41
11956 ACATAATCTT
* *
11966 TGATGGACTGGTGCTAATCTCTGATGGACTGGTTCTATTTC
1 TGATGGACCGGTTCTAATCTCTGATGGACTGGTTCTATTTC
** *
12007 TGATGGACTAGTTCT-ATTTCTGATGGACTGGTTCTATTTC
1 TGATGGACCGGTTCTAATCTCTGATGGACTGGTTCTATTTC
12047 TGATGGACCGGTTCTAATCTCTGATGGACTGGTTCTATTTC
1 TGATGGACCGGTTCTAATCTCTGATGGACTGGTTCTATTTC
*
12088 TGATGGACCGGTTCTAATCTCTGATGGACTAGTTCTATTTC
1 TGATGGACCGGTTCTAATCTCTGATGGACTGGTTCTATTTC
12129 TGATGGAC
1 TGATGGAC
12137 TGGTCCCTTT
Statistics
Matches: 122, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 37 0.30
41 85 0.70
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.40
Consensus pattern (41 bp):
TGATGGACCGGTTCTAATCTCTGATGGACTGGTTCTATTTC
Left flanking sequence: Indices 11466 -- 11965
GCTCCTCTACTTGGTGCCGTACCTCGTGCTCTTCCGCAAGCAGCTCGACGGAAACTACTACGACC
ACCCGGACCAGCGCATCGACGAGAAGGAGATGATGGACGCCGTGAACCCGGACGACTTGTTGCAC
GAGATCGACTTGCACCGGCCGCCGAACTAATTTTTATGGATTTGAATAGAGAATATATGTAATAG
GAATGAGCAGAGGGTGTGGTGTTGCTACGTGCCAGCATGTCAGGGCAACAAGCTAATTTGATGTG
ACTGGTTCCATAGTTGGCTCCCATATACCTGGTTACACTCTTAACCAAATGCGGTAGCGATCTTA
TTGGTAGCCATCTAGTTGGTAGCCATCGAATTAAGAGGTAGTTACAGGGACGTGAACCTGACCAT
CACGCAACCTACATTCTGGATCTTTTACACTATATAGAATAGAGTCTACCGATTTTTGGGATCTC
CATTTAATTCCATAACGCATTTCATACCCTTCAAAACATAATCTT
Right flanking sequence: Indices 12137 -- 12636
TGGTCCCTTTGTAGATTCATTGTGCATTGATGGCTGCGTAATATTCGTAATCTATTGTTAGCCTT
GCCAAGCCTACTCATAACCACCACGAGGGCACTCGCCAAAATGGGAATACGAATATACGAGGTGA
GTATATAGATGTAGAAAGTCCGAGGCATAAACTATGCTCTACAACTACACCACCGACCATGTCCC
GAGCAAGTACCAGATCTACTGGCTGAGTCCGAGCTACTGCGCGACCCTGATGTATTCCTACAATT
GGCCCCAGCTCAACCTCAACGGGTCCACCATCGTTTGCGCCACTCCAATCACAAAGTACGATGAG
GACATACGGAGGTTCCTCATTGTGGAAACCGTCGTCGACGACCTGTCGTTTTCGGGGTTTGTTTC
CGCCGAAGCGAGAAACGAGTCCTACTTTAATCGCTGTAACTACCGTTGTAAGTCTGCTGAATTCG
TGAACCACTCGGAGTACTGCCTCTACCTGGCCGCCGACTACGGGG
Found at i:12138 original size:61 final size:61
Alignment explanation
Indices: 11966--12140 Score: 271
Period size: 61 Copynumber: 2.9 Consensus size: 61
11956 ACATAATCTT
* *
11966 TGATGGACTGGTGCTAATCTCTGATGGACTGGTTCTATTTCTGATGGACTAGTTCTATTTC
1 TGATGGACTGGTTCTAATCTCTGATGGACTGGTTCTATTTCTGATGGACTGGTTCTATTTC
* * *
12027 TGATGGACTGGTTCT-ATTTCTGATGGACCGGTTCTAATCTCTGATGGACTGGTTCTATTTC
1 TGATGGACTGGTTCTAATCTCTGATGGACTGGTTCT-ATTTCTGATGGACTGGTTCTATTTC
* *
12088 TGATGGACCGGTTCTAATCTCTGATGGACTAGTTCTATTTCTGATGGACTGGT
1 TGATGGACTGGTTCTAATCTCTGATGGACTGGTTCTATTTCTGATGGACTGGT
12141 CCCTTTGTAG
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
60 18 0.18
61 67 0.66
62 17 0.17
ACGTcount: A:0.18, C:0.17, G:0.25, T:0.40
Consensus pattern (61 bp):
TGATGGACTGGTTCTAATCTCTGATGGACTGGTTCTATTTCTGATGGACTGGTTCTATTTC
Left flanking sequence: Indices 11466 -- 11965
GCTCCTCTACTTGGTGCCGTACCTCGTGCTCTTCCGCAAGCAGCTCGACGGAAACTACTACGACC
ACCCGGACCAGCGCATCGACGAGAAGGAGATGATGGACGCCGTGAACCCGGACGACTTGTTGCAC
GAGATCGACTTGCACCGGCCGCCGAACTAATTTTTATGGATTTGAATAGAGAATATATGTAATAG
GAATGAGCAGAGGGTGTGGTGTTGCTACGTGCCAGCATGTCAGGGCAACAAGCTAATTTGATGTG
ACTGGTTCCATAGTTGGCTCCCATATACCTGGTTACACTCTTAACCAAATGCGGTAGCGATCTTA
TTGGTAGCCATCTAGTTGGTAGCCATCGAATTAAGAGGTAGTTACAGGGACGTGAACCTGACCAT
CACGCAACCTACATTCTGGATCTTTTACACTATATAGAATAGAGTCTACCGATTTTTGGGATCTC
CATTTAATTCCATAACGCATTTCATACCCTTCAAAACATAATCTT
Right flanking sequence: Indices 12141 -- 12640
CCCTTTGTAGATTCATTGTGCATTGATGGCTGCGTAATATTCGTAATCTATTGTTAGCCTTGCCA
AGCCTACTCATAACCACCACGAGGGCACTCGCCAAAATGGGAATACGAATATACGAGGTGAGTAT
ATAGATGTAGAAAGTCCGAGGCATAAACTATGCTCTACAACTACACCACCGACCATGTCCCGAGC
AAGTACCAGATCTACTGGCTGAGTCCGAGCTACTGCGCGACCCTGATGTATTCCTACAATTGGCC
CCAGCTCAACCTCAACGGGTCCACCATCGTTTGCGCCACTCCAATCACAAAGTACGATGAGGACA
TACGGAGGTTCCTCATTGTGGAAACCGTCGTCGACGACCTGTCGTTTTCGGGGTTTGTTTCCGCC
GAAGCGAGAAACGAGTCCTACTTTAATCGCTGTAACTACCGTTGTAAGTCTGCTGAATTCGTGAA
CCACTCGGAGTACTGCCTCTACCTGGCCGCCGACTACGGGGTGTG
Found at i:13598 original size:27 final size:27
Alignment explanation
Indices: 13560--13611 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
13550 TGGCCCATCG
* *
13560 GGGGCTCAGGAAGTCCAGCACCGCCTA
1 GGGGCTCAGGAAGACCAGAACCGCCTA
13587 GGGGCTCAGGAAGACCAGAACCGCC
1 GGGGCTCAGGAAGACCAGAACCGCC
13612 CATTCGATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.33, G:0.35, T:0.08
Consensus pattern (27 bp):
GGGGCTCAGGAAGACCAGAACCGCCTA
Left flanking sequence: Indices 13060 -- 13559
GGTAGTTGATATGTTCATGGTGAATATCTCTGGAACGGTGTCCCCATTGTCACGTACATGAGTAG
AGGCTCTCGCATCATCCGGTTACAAGTTCACGAACTCCTTCTTTGTTTTCTTTACAATTTCACGA
ATCCTTTGCCTGTATTCGAACTCGAGACCCAGTGCTACTTTTAGCAGGTTTCGTATATTCTTCAC
AAATTCGCAGAATATTCCCAAATACCATACAAAGCCAAAACTCAATCGCTACCATAGCAGTTTCA
TTTACTCGTATATATACAATCGTTAGAGTCATCAACTAAGGCTAAACACCCGCACGTAGGGATCC
ATTTGGTCGCTCGGGGTGTCTTGAGCCGGCGCAGGCGCCATCGTACGTGGCTGAGGCGTAGCCTG
GTGGTATTCGGGAGTTAACGGGTACCCTTGGCCCGCAGGCGGGTAGTTGCCTGGCATGGGCGGGG
GGTGGAAGGCCATGTTTGGCATGGGAGGTGCAAACTGGCCCATCG
Right flanking sequence: Indices 13612 -- 14111
CATTCGATGCACGGGAAACGCTGCTTGATCGTAGCTGAACGTCTGGTCCGGACCTGGGGCCAAGG
GAGCCATTCCAGGCCCCATTCCAGGCCCCACTGGAGGCCCTCCTGGACCAGCCATGGCGTAGTAT
GCGTTATCAAGGGGTTGAGTTGTGGGTTGAGTCGTGGGTTGAGTCGTGGGGTGTCCAGGTAAGCT
GGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTCAGGCACCAAGAGTCCTG
TTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGGGGTCCACCTCGCGTTTCGCA
CGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGCGGAGCCATGGGTGCTGC
GGGAGTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGGAGCCAGGAAGAGAGCCGG
GAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGC
Found at i:13697 original size:12 final size:12
Alignment explanation
Indices: 13680--13706 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
13670 GCCAAGGGAG
13680 CCATTCCAGGCC
1 CCATTCCAGGCC
13692 CCATTCCAGGCC
1 CCATTCCAGGCC
13704 CCA
1 CCA
13707 CTGGAGGCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.52, G:0.15, T:0.15
Consensus pattern (12 bp):
CCATTCCAGGCC
Left flanking sequence: Indices 13180 -- 13679
AATTTCACGAATCCTTTGCCTGTATTCGAACTCGAGACCCAGTGCTACTTTTAGCAGGTTTCGTA
TATTCTTCACAAATTCGCAGAATATTCCCAAATACCATACAAAGCCAAAACTCAATCGCTACCAT
AGCAGTTTCATTTACTCGTATATATACAATCGTTAGAGTCATCAACTAAGGCTAAACACCCGCAC
GTAGGGATCCATTTGGTCGCTCGGGGTGTCTTGAGCCGGCGCAGGCGCCATCGTACGTGGCTGAG
GCGTAGCCTGGTGGTATTCGGGAGTTAACGGGTACCCTTGGCCCGCAGGCGGGTAGTTGCCTGGC
ATGGGCGGGGGGTGGAAGGCCATGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCAGG
AAGTCCAGCACCGCCTAGGGGCTCAGGAAGACCAGAACCGCCCATTCGATGCACGGGAAACGCTG
CTTGATCGTAGCTGAACGTCTGGTCCGGACCTGGGGCCAAGGGAG
Right flanking sequence: Indices 13707 -- 14206
CTGGAGGCCCTCCTGGACCAGCCATGGCGTAGTATGCGTTATCAAGGGGTTGAGTTGTGGGTTGA
GTCGTGGGTTGAGTCGTGGGGTGTCCAGGTAAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCG
GGGACGTCCGCGTCGTTCAGGCACCAAGAGTCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCG
GTTTGGGCCGCGAGGGGTCCACCTCGCGTTTCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTC
GTGGGGGCGGGAGCAAGCGGAGCCATGGGTGCTGCGGGAGTCGTAGGGAACACACCAGCACCAGG
AACAGATCCAGGAAGGGAGCCAGGAAGAGAGCCGGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAG
AGCCAGGAAGAGAGCCAGGAATAGAGCCAGGAATAGCACCAGTAACAGAGCCAGCAGAGCCAGGA
ATGGAACCAGCAACAAAGCCTGCTCCAGACACAGAGTCTGGCCCA
Found at i:13770 original size:12 final size:12
Alignment explanation
Indices: 13753--13791 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
13743 CGTTATCAAG
*
13753 GGGTTGAGTTGT
1 GGGTTGAGTCGT
13765 GGGTTGAGTCGT
1 GGGTTGAGTCGT
13777 GGGTTGAGTCGT
1 GGGTTGAGTCGT
13789 GGG
1 GGG
13792 GTGTCCAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.08, C:0.05, G:0.54, T:0.33
Consensus pattern (12 bp):
GGGTTGAGTCGT
Left flanking sequence: Indices 13253 -- 13752
ACAAATTCGCAGAATATTCCCAAATACCATACAAAGCCAAAACTCAATCGCTACCATAGCAGTTT
CATTTACTCGTATATATACAATCGTTAGAGTCATCAACTAAGGCTAAACACCCGCACGTAGGGAT
CCATTTGGTCGCTCGGGGTGTCTTGAGCCGGCGCAGGCGCCATCGTACGTGGCTGAGGCGTAGCC
TGGTGGTATTCGGGAGTTAACGGGTACCCTTGGCCCGCAGGCGGGTAGTTGCCTGGCATGGGCGG
GGGGTGGAAGGCCATGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCAGGAAGTCCAG
CACCGCCTAGGGGCTCAGGAAGACCAGAACCGCCCATTCGATGCACGGGAAACGCTGCTTGATCG
TAGCTGAACGTCTGGTCCGGACCTGGGGCCAAGGGAGCCATTCCAGGCCCCATTCCAGGCCCCAC
TGGAGGCCCTCCTGGACCAGCCATGGCGTAGTATGCGTTATCAAG
Right flanking sequence: Indices 13792 -- 14291
GTGTCCAGGTAAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTCAG
GCACCAAGAGTCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGGGGTCC
ACCTCGCGTTTCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGCGG
AGCCATGGGTGCTGCGGGAGTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGGAGC
CAGGAAGAGAGCCGGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGA
ATAGAGCCAGGAATAGCACCAGTAACAGAGCCAGCAGAGCCAGGAATGGAACCAGCAACAAAGCC
TGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGAAATAGCCATGTTTCCAGGCACCAAACCAC
CCGGCTCGAGTTTCACCTCCTGATTCCCCTCATGCTTCACCCCCT
Found at i:14132 original size:12 final size:12
Alignment explanation
Indices: 14027--14129 Score: 161
Period size: 12 Copynumber: 8.6 Consensus size: 12
14017 CACACCAGCA
* *
14027 CCAGGAACAGAT
1 CCAGGAAGAGAG
*
14039 CCAGGAAGGGAG
1 CCAGGAAGAGAG
14051 CCAGGAAGAGAG
1 CCAGGAAGAGAG
*
14063 CCGGGAAGAGAG
1 CCAGGAAGAGAG
14075 CCAGGAAGAGAG
1 CCAGGAAGAGAG
14087 CCAGGAAGAGAG
1 CCAGGAAGAGAG
14099 CCAGGAAGAGAG
1 CCAGGAAGAGAG
*
14111 CCAGGAATAGAG
1 CCAGGAAGAGAG
14123 CCAGGAA
1 CCAGGAA
14130 TAGCACCAGT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 84 1.00
ACGTcount: A:0.40, C:0.18, G:0.40, T:0.02
Consensus pattern (12 bp):
CCAGGAAGAGAG
Left flanking sequence: Indices 13527 -- 14026
TGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCAGGAAGTCCAGCACCGCCTAGGGGC
TCAGGAAGACCAGAACCGCCCATTCGATGCACGGGAAACGCTGCTTGATCGTAGCTGAACGTCTG
GTCCGGACCTGGGGCCAAGGGAGCCATTCCAGGCCCCATTCCAGGCCCCACTGGAGGCCCTCCTG
GACCAGCCATGGCGTAGTATGCGTTATCAAGGGGTTGAGTTGTGGGTTGAGTCGTGGGTTGAGTC
GTGGGGTGTCCAGGTAAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCG
TTCAGGCACCAAGAGTCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGG
GGTCCACCTCGCGTTTCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCA
AGCGGAGCCATGGGTGCTGCGGGAGTCGTAGGGAACACACCAGCA
Right flanking sequence: Indices 14130 -- 14629
TAGCACCAGTAACAGAGCCAGCAGAGCCAGGAATGGAACCAGCAACAAAGCCTGCTCCAGACACA
GAGTCTGGCCCAAAGCCACCAGAAATAGCCATGTTTCCAGGCACCAAACCACCCGGCTCGAGTTT
CACCTCCTGATTCCCCTCATGCTTCACCCCCTGCTTCTCCTGCTTCTCCTGCTTCTCCTCCTTCT
CCTTCACCTCCTTCTCCTGCTTCTTAAACGCCTTCTGGGCCGCCTCACACACCGCCACCTCGTGC
GACGGGTACACGCCCACCACCTGGTCGGCGCCCACCTCCACCACGTCCTCCAACTGCGGATACAC
CGCCACTAGCACCAGCGCCTCGGGCCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAA
ACGTGCACTGGACCCACGCCCGCTGGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTAC
TTGCACTTGGCCTCGCCCTCGGCAAGCGCCACCTGGTCCACGAGC
Found at i:14138 original size:12 final size:12
Alignment explanation
Indices: 14027--14150 Score: 124
Period size: 12 Copynumber: 10.3 Consensus size: 12
14017 CACACCAGCA
* *
14027 CCAGGAACAGAT
1 CCAGGAATAGAG
**
14039 CCAGGAAGGGAG
1 CCAGGAATAGAG
*
14051 CCAGGAAGAGAG
1 CCAGGAATAGAG
* *
14063 CCGGGAAGAGAG
1 CCAGGAATAGAG
*
14075 CCAGGAAGAGAG
1 CCAGGAATAGAG
*
14087 CCAGGAAGAGAG
1 CCAGGAATAGAG
*
14099 CCAGGAAGAGAG
1 CCAGGAATAGAG
14111 CCAGGAATAGAG
1 CCAGGAATAGAG
14123 CCAGGAATAGCA-
1 CCAGGAATAG-AG
* *
14135 CCAGTAACAGAG
1 CCAGGAATAGAG
14147 CCAG
1 CCAG
14151 CAGAGCCAGG
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
11 1 0.01
12 99 0.98
13 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.37, T:0.03
Consensus pattern (12 bp):
CCAGGAATAGAG
Left flanking sequence: Indices 13527 -- 14026
TGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCAGGAAGTCCAGCACCGCCTAGGGGC
TCAGGAAGACCAGAACCGCCCATTCGATGCACGGGAAACGCTGCTTGATCGTAGCTGAACGTCTG
GTCCGGACCTGGGGCCAAGGGAGCCATTCCAGGCCCCATTCCAGGCCCCACTGGAGGCCCTCCTG
GACCAGCCATGGCGTAGTATGCGTTATCAAGGGGTTGAGTTGTGGGTTGAGTCGTGGGTTGAGTC
GTGGGGTGTCCAGGTAAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCG
TTCAGGCACCAAGAGTCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGG
GGTCCACCTCGCGTTTCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCA
AGCGGAGCCATGGGTGCTGCGGGAGTCGTAGGGAACACACCAGCA
Right flanking sequence: Indices 14151 -- 14650
CAGAGCCAGGAATGGAACCAGCAACAAAGCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCA
GAAATAGCCATGTTTCCAGGCACCAAACCACCCGGCTCGAGTTTCACCTCCTGATTCCCCTCATG
CTTCACCCCCTGCTTCTCCTGCTTCTCCTGCTTCTCCTCCTTCTCCTTCACCTCCTTCTCCTGCT
TCTTAAACGCCTTCTGGGCCGCCTCACACACCGCCACCTCGTGCGACGGGTACACGCCCACCACC
TGGTCGGCGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACTAGCACCAGCGCCTC
GGGCCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGCACTGGACCCACGCCC
GCTGGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCG
GCAAGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTC
Found at i:14146 original size:24 final size:24
Alignment explanation
Indices: 14027--14150 Score: 142
Period size: 24 Copynumber: 5.2 Consensus size: 24
14017 CACACCAGCA
* * **
14027 CCAGGAACAGATCCAGGAAGGGAG
1 CCAGGAAGAGAGCCAGGAACAGAG
* *
14051 CCAGGAAGAGAGCCGGGAAGAGAG
1 CCAGGAAGAGAGCCAGGAACAGAG
*
14075 CCAGGAAGAGAGCCAGGAAGAGAG
1 CCAGGAAGAGAGCCAGGAACAGAG
*
14099 CCAGGAAGAGAGCCAGGAATAGAG
1 CCAGGAAGAGAGCCAGGAACAGAG
* *
14123 CCAGGAATAGCA-CCAGTAACAGAG
1 CCAGGAAGAG-AGCCAGGAACAGAG
14147 CCAG
1 CCAG
14151 CAGAGCCAGG
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
24 89 0.99
25 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.37, T:0.03
Consensus pattern (24 bp):
CCAGGAAGAGAGCCAGGAACAGAG
Left flanking sequence: Indices 13527 -- 14026
TGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCAGGAAGTCCAGCACCGCCTAGGGGC
TCAGGAAGACCAGAACCGCCCATTCGATGCACGGGAAACGCTGCTTGATCGTAGCTGAACGTCTG
GTCCGGACCTGGGGCCAAGGGAGCCATTCCAGGCCCCATTCCAGGCCCCACTGGAGGCCCTCCTG
GACCAGCCATGGCGTAGTATGCGTTATCAAGGGGTTGAGTTGTGGGTTGAGTCGTGGGTTGAGTC
GTGGGGTGTCCAGGTAAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCG
TTCAGGCACCAAGAGTCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGG
GGTCCACCTCGCGTTTCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCA
AGCGGAGCCATGGGTGCTGCGGGAGTCGTAGGGAACACACCAGCA
Right flanking sequence: Indices 14151 -- 14650
CAGAGCCAGGAATGGAACCAGCAACAAAGCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCA
GAAATAGCCATGTTTCCAGGCACCAAACCACCCGGCTCGAGTTTCACCTCCTGATTCCCCTCATG
CTTCACCCCCTGCTTCTCCTGCTTCTCCTGCTTCTCCTCCTTCTCCTTCACCTCCTTCTCCTGCT
TCTTAAACGCCTTCTGGGCCGCCTCACACACCGCCACCTCGTGCGACGGGTACACGCCCACCACC
TGGTCGGCGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACTAGCACCAGCGCCTC
GGGCCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGCACTGGACCCACGCCC
GCTGGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCG
GCAAGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTC
Found at i:14147 original size:36 final size:36
Alignment explanation
Indices: 14027--14150 Score: 160
Period size: 36 Copynumber: 3.4 Consensus size: 36
14017 CACACCAGCA
* *
14027 CCAGGAACAGATCCAGGAAGGGAGCCAGGAAGAGAG
1 CCAGGAACAGAGCCAGGAAGAGAGCCAGGAAGAGAG
* *
14063 CCGGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAG
1 CCAGGAACAGAGCCAGGAAGAGAGCCAGGAAGAGAG
* * *
14099 CCAGGAAGAGAGCCAGGAATAGAGCCAGGAATAGCA-
1 CCAGGAACAGAGCCAGGAAGAGAGCCAGGAAGAG-AG
*
14135 CCAGTAACAGAGCCAG
1 CCAGGAACAGAGCCAG
14151 CAGAGCCAGG
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
36 77 0.99
37 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.37, T:0.03
Consensus pattern (36 bp):
CCAGGAACAGAGCCAGGAAGAGAGCCAGGAAGAGAG
Left flanking sequence: Indices 13527 -- 14026
TGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCAGGAAGTCCAGCACCGCCTAGGGGC
TCAGGAAGACCAGAACCGCCCATTCGATGCACGGGAAACGCTGCTTGATCGTAGCTGAACGTCTG
GTCCGGACCTGGGGCCAAGGGAGCCATTCCAGGCCCCATTCCAGGCCCCACTGGAGGCCCTCCTG
GACCAGCCATGGCGTAGTATGCGTTATCAAGGGGTTGAGTTGTGGGTTGAGTCGTGGGTTGAGTC
GTGGGGTGTCCAGGTAAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCG
TTCAGGCACCAAGAGTCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGG
GGTCCACCTCGCGTTTCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCA
AGCGGAGCCATGGGTGCTGCGGGAGTCGTAGGGAACACACCAGCA
Right flanking sequence: Indices 14151 -- 14650
CAGAGCCAGGAATGGAACCAGCAACAAAGCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCA
GAAATAGCCATGTTTCCAGGCACCAAACCACCCGGCTCGAGTTTCACCTCCTGATTCCCCTCATG
CTTCACCCCCTGCTTCTCCTGCTTCTCCTGCTTCTCCTCCTTCTCCTTCACCTCCTTCTCCTGCT
TCTTAAACGCCTTCTGGGCCGCCTCACACACCGCCACCTCGTGCGACGGGTACACGCCCACCACC
TGGTCGGCGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACTAGCACCAGCGCCTC
GGGCCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGCACTGGACCCACGCCC
GCTGGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCG
GCAAGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTC
Found at i:14161 original size:33 final size:33
Alignment explanation
Indices: 14119--14181 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
14109 AGCCAGGAAT
* * *
14119 AGAGCCAGGAATAGCACCAGTAACAGAGCCAGC
1 AGAGCCAGGAATAGAACCAGCAACAAAGCCAGC
*
14152 AGAGCCAGGAATGGAACCAGCAACAAAGCC
1 AGAGCCAGGAATAGAACCAGCAACAAAGCC
14182 TGCTCCAGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.41, C:0.27, G:0.27, T:0.05
Consensus pattern (33 bp):
AGAGCCAGGAATAGAACCAGCAACAAAGCCAGC
Left flanking sequence: Indices 13619 -- 14118
TGCACGGGAAACGCTGCTTGATCGTAGCTGAACGTCTGGTCCGGACCTGGGGCCAAGGGAGCCAT
TCCAGGCCCCATTCCAGGCCCCACTGGAGGCCCTCCTGGACCAGCCATGGCGTAGTATGCGTTAT
CAAGGGGTTGAGTTGTGGGTTGAGTCGTGGGTTGAGTCGTGGGGTGTCCAGGTAAGCTGGTCTGA
GCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTCAGGCACCAAGAGTCCTGTTTTTGC
GTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGGGGTCCACCTCGCGTTTCGCACGCTTCT
TGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGCGGAGCCATGGGTGCTGCGGGAGTC
GTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGGAGCCAGGAAGAGAGCCGGGAAGAGA
GCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAAT
Right flanking sequence: Indices 14182 -- 14681
TGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGAAATAGCCATGTTTCCAGGCACCAAACCAC
CCGGCTCGAGTTTCACCTCCTGATTCCCCTCATGCTTCACCCCCTGCTTCTCCTGCTTCTCCTGC
TTCTCCTCCTTCTCCTTCACCTCCTTCTCCTGCTTCTTAAACGCCTTCTGGGCCGCCTCACACAC
CGCCACCTCGTGCGACGGGTACACGCCCACCACCTGGTCGGCGCCCACCTCCACCACGTCCTCCA
ACTGCGGATACACCGCCACTAGCACCAGCGCCTCGGGCCGCGTCTCCACCACCCGGCCCAAGAAC
GAGCCCTTGCCAAACGTGCACTGGACCCACGCCCGCTGGCCCTTCGCCACCGCCACGGGAGCCAC
CTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCGGCAAGCGCCACCTGGTCCACGAGCGCACACG
GCGCGTGGTAGCTCCGGGTGCACTTGGGATGGCTGCACTGGAAAC
Found at i:14303 original size:9 final size:9
Alignment explanation
Indices: 14289--14348 Score: 72
Period size: 9 Copynumber: 7.0 Consensus size: 9
14279 TGCTTCACCC
14289 CCTGCTTCT
1 CCTGCTTCT
14298 CCTGCTTCT
1 CCTGCTTCT
14307 CCTGCTTCT
1 CCTGCTTCT
*
14316 CCTCCTTCT
1 CCTGCTTCT
*
14325 -C--CTTCA
1 CCTGCTTCT
*
14331 CCTCCTTCT
1 CCTGCTTCT
14340 CCTGCTTCT
1 CCTGCTTCT
14349 TAAACGCCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
6 4 0.09
7 1 0.02
8 1 0.02
9 38 0.86
ACGTcount: A:0.02, C:0.48, G:0.07, T:0.43
Consensus pattern (9 bp):
CCTGCTTCT
Left flanking sequence: Indices 13789 -- 14288
GGGGTGTCCAGGTAAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTT
CAGGCACCAAGAGTCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGGGG
TCCACCTCGCGTTTCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAG
CGGAGCCATGGGTGCTGCGGGAGTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGG
AGCCAGGAAGAGAGCCGGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCA
GGAATAGAGCCAGGAATAGCACCAGTAACAGAGCCAGCAGAGCCAGGAATGGAACCAGCAACAAA
GCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGAAATAGCCATGTTTCCAGGCACCAAAC
CACCCGGCTCGAGTTTCACCTCCTGATTCCCCTCATGCTTCACCC
Right flanking sequence: Indices 14349 -- 14848
TAAACGCCTTCTGGGCCGCCTCACACACCGCCACCTCGTGCGACGGGTACACGCCCACCACCTGG
TCGGCGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACTAGCACCAGCGCCTCGGG
CCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGCACTGGACCCACGCCCGCT
GGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCGGCA
AGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGCACTTGGGATGGCTGCA
CTGGAAACAGGGCCCGGGCTGCTTGCACACCGTGCAATTGAGCTTCCGCTGCGCACGGGTCACCT
CCTCGAGCCCCCGAACAGCGCCGTCAGCGACGGAGACCTGCTCGGGGTACATGGTCGCGCACACA
CGGTGGCAGAACTTGGAGCCCTGCGCCGTGGGCACCAACTCAAAC
Found at i:14312 original size:18 final size:18
Alignment explanation
Indices: 14289--14348 Score: 81
Period size: 18 Copynumber: 3.5 Consensus size: 18
14279 TGCTTCACCC
*
14289 CCTGCTTCTCCTGCTTCT
1 CCTGCTTCTCCTCCTTCT
14307 CCTGCTTCTCCTCCTTCT
1 CCTGCTTCTCCTCCTTCT
*
14325 -C--CTTCACCTCCTTCT
1 CCTGCTTCTCCTCCTTCT
14340 CCTGCTTCT
1 CCTGCTTCT
14349 TAAACGCCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 13 0.36
16 1 0.03
17 1 0.03
18 21 0.58
ACGTcount: A:0.02, C:0.48, G:0.07, T:0.43
Consensus pattern (18 bp):
CCTGCTTCTCCTCCTTCT
Left flanking sequence: Indices 13789 -- 14288
GGGGTGTCCAGGTAAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTT
CAGGCACCAAGAGTCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGGGG
TCCACCTCGCGTTTCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAG
CGGAGCCATGGGTGCTGCGGGAGTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGG
AGCCAGGAAGAGAGCCGGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCA
GGAATAGAGCCAGGAATAGCACCAGTAACAGAGCCAGCAGAGCCAGGAATGGAACCAGCAACAAA
GCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGAAATAGCCATGTTTCCAGGCACCAAAC
CACCCGGCTCGAGTTTCACCTCCTGATTCCCCTCATGCTTCACCC
Right flanking sequence: Indices 14349 -- 14848
TAAACGCCTTCTGGGCCGCCTCACACACCGCCACCTCGTGCGACGGGTACACGCCCACCACCTGG
TCGGCGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACTAGCACCAGCGCCTCGGG
CCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGCACTGGACCCACGCCCGCT
GGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCGGCA
AGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGCACTTGGGATGGCTGCA
CTGGAAACAGGGCCCGGGCTGCTTGCACACCGTGCAATTGAGCTTCCGCTGCGCACGGGTCACCT
CCTCGAGCCCCCGAACAGCGCCGTCAGCGACGGAGACCTGCTCGGGGTACATGGTCGCGCACACA
CGGTGGCAGAACTTGGAGCCCTGCGCCGTGGGCACCAACTCAAAC
Found at i:14334 original size:15 final size:15
Alignment explanation
Indices: 14311--14342 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14301 GCTTCTCCTG
*
14311 CTTCTCCTCCTTCTC
1 CTTCACCTCCTTCTC
14326 CTTCACCTCCTTCTC
1 CTTCACCTCCTTCTC
14341 CT
1 CT
14343 GCTTCTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.03, C:0.53, G:0.00, T:0.44
Consensus pattern (15 bp):
CTTCACCTCCTTCTC
Left flanking sequence: Indices 13811 -- 14310
TGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTCAGGCACCAAGAGTCCTGTTTT
TGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGGGGTCCACCTCGCGTTTCGCACGCT
TCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGCGGAGCCATGGGTGCTGCGGGA
GTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGGAGCCAGGAAGAGAGCCGGGAAG
AGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAATAGAGCCAGGAATAGCAC
CAGTAACAGAGCCAGCAGAGCCAGGAATGGAACCAGCAACAAAGCCTGCTCCAGACACAGAGTCT
GGCCCAAAGCCACCAGAAATAGCCATGTTTCCAGGCACCAAACCACCCGGCTCGAGTTTCACCTC
CTGATTCCCCTCATGCTTCACCCCCTGCTTCTCCTGCTTCTCCTG
Right flanking sequence: Indices 14343 -- 14842
GCTTCTTAAACGCCTTCTGGGCCGCCTCACACACCGCCACCTCGTGCGACGGGTACACGCCCACC
ACCTGGTCGGCGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACTAGCACCAGCGC
CTCGGGCCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGCACTGGACCCACG
CCCGCTGGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCC
TCGGCAAGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGCACTTGGGATG
GCTGCACTGGAAACAGGGCCCGGGCTGCTTGCACACCGTGCAATTGAGCTTCCGCTGCGCACGGG
TCACCTCCTCGAGCCCCCGAACAGCGCCGTCAGCGACGGAGACCTGCTCGGGGTACATGGTCGCG
CACACACGGTGGCAGAACTTGGAGCCCTGCGCCGTGGGCACCAAC
Found at i:14338 original size:24 final size:24
Alignment explanation
Indices: 14302--14348 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14292 GCTTCTCCTG
* *
14302 CTTCTCCTGCTTCTCCTCCTTCTC
1 CTTCACCTCCTTCTCCTCCTTCTC
*
14326 CTTCACCTCCTTCTCCTGCTTCT
1 CTTCACCTCCTTCTCCTCCTTCT
14349 TAAACGCCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.02, C:0.49, G:0.04, T:0.45
Consensus pattern (24 bp):
CTTCACCTCCTTCTCCTCCTTCTC
Left flanking sequence: Indices 13802 -- 14301
AAGCTGGTCTGAGCCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTCAGGCACCAAGAG
TCCTGTTTTTGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGAGGGGTCCACCTCGCGTT
TCGCACGCTTCTTGGCCGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGCGGAGCCATGGGT
GCTGCGGGAGTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGGAGCCAGGAAGAGA
GCCGGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAAGAGAGCCAGGAATAGAGCCAG
GAATAGCACCAGTAACAGAGCCAGCAGAGCCAGGAATGGAACCAGCAACAAAGCCTGCTCCAGAC
ACAGAGTCTGGCCCAAAGCCACCAGAAATAGCCATGTTTCCAGGCACCAAACCACCCGGCTCGAG
TTTCACCTCCTGATTCCCCTCATGCTTCACCCCCTGCTTCTCCTG
Right flanking sequence: Indices 14349 -- 14848
TAAACGCCTTCTGGGCCGCCTCACACACCGCCACCTCGTGCGACGGGTACACGCCCACCACCTGG
TCGGCGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACTAGCACCAGCGCCTCGGG
CCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGCACTGGACCCACGCCCGCT
GGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCGGCA
AGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGCACTTGGGATGGCTGCA
CTGGAAACAGGGCCCGGGCTGCTTGCACACCGTGCAATTGAGCTTCCGCTGCGCACGGGTCACCT
CCTCGAGCCCCCGAACAGCGCCGTCAGCGACGGAGACCTGCTCGGGGTACATGGTCGCGCACACA
CGGTGGCAGAACTTGGAGCCCTGCGCCGTGGGCACCAACTCAAAC
Found at i:14978 original size:9 final size:9
Alignment explanation
Indices: 14964--14994 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
14954 GGTTTAGCCA
14964 CCTCTTTCG
1 CCTCTTTCG
14973 CCTCTTTCG
1 CCTCTTTCG
14982 CCTCTTTCG
1 CCTCTTTCG
14991 CCTC
1 CCTC
14995 CTCCACCTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.48, G:0.10, T:0.42
Consensus pattern (9 bp):
CCTCTTTCG
Left flanking sequence: Indices 14464 -- 14963
CACCAGCGCCTCGGGCCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGCACT
GGACCCACGCCCGCTGGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTG
GCCTCGCCCTCGGCAAGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGCA
CTTGGGATGGCTGCACTGGAAACAGGGCCCGGGCTGCTTGCACACCGTGCAATTGAGCTTCCGCT
GCGCACGGGTCACCTCCTCGAGCCCCCGAACAGCGCCGTCAGCGACGGAGACCTGCTCGGGGTAC
ATGGTCGCGCACACACGGTGGCAGAACTTGGAGCCCTGCGCCGTGGGCACCAACTCAAACAACGA
GTCGGTGGCCAACGGAGTGCCGTACACCGAGAGCCAGCACAACTGGCACTCGCGGGGCCCTGTTG
AGACCACTCGTTTCACATCTCGGCGTTTTTTCAATGGTTTAGCCA
Right flanking sequence: Indices 14995 -- 15494
CTCCACCTCCTCGGGCGACTCGGGCGGCGTCAGGTACTCGTAGGGAATCCCCTTGAACTTGCACC
ACAACTGGCGCACGTTGATTCCCACCGCGTCCGCGATACACTCGCACTTGTGGGTCTTTTCCGCG
ATGGGGAACCAGTCGTCGAGCGCAAAGTTGACCAGCTCCGCCAAGTTGTACCCGTAGTTGAACCC
AGCGTGGTAGCCGTAGGGGTAGGTGATGACGAACTCGCCCTCGTGGTGGGTGATGTGGTTGACGG
GGATGTCGTGCTTGGCCAAGTACTGCGGCAGCACCATAAACGTCTTGTGGCGCAAAAACTCGGGG
CACTGGCGGTACTCGTCGGCAAACTCCTCCTTGAGCACCTCGAAGAACCGCTGGTGGTGCGCCTG
GGGGATCAGATACCACTGCTTGGGGGCGCCAAAGTGGATGTAGTTGATCAGATACAAGTCCTGGT
CCTCCAAGTGCCAGGCAAACGTCGCCTTCCACAACCCCGCATACA
Found at i:15003 original size:18 final size:18
Alignment explanation
Indices: 14961--15003 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14951 AATGGTTTAG
*
14961 CCACCTCTTTCGCCTCTT
1 CCACCTCTTTCGCCTCCT
* *
14979 TCGCCTCTTTCGCCTCCT
1 CCACCTCTTTCGCCTCCT
14997 CCACCTC
1 CCACCTC
15004 CTCGGGCGAC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.53, G:0.07, T:0.35
Consensus pattern (18 bp):
CCACCTCTTTCGCCTCCT
Left flanking sequence: Indices 14461 -- 14960
TAGCACCAGCGCCTCGGGCCGCGTCTCCACCACCCGGCCCAAGAACGAGCCCTTGCCAAACGTGC
ACTGGACCCACGCCCGCTGGCCCTTCGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCAC
TTGGCCTCGCCCTCGGCAAGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGT
GCACTTGGGATGGCTGCACTGGAAACAGGGCCCGGGCTGCTTGCACACCGTGCAATTGAGCTTCC
GCTGCGCACGGGTCACCTCCTCGAGCCCCCGAACAGCGCCGTCAGCGACGGAGACCTGCTCGGGG
TACATGGTCGCGCACACACGGTGGCAGAACTTGGAGCCCTGCGCCGTGGGCACCAACTCAAACAA
CGAGTCGGTGGCCAACGGAGTGCCGTACACCGAGAGCCAGCACAACTGGCACTCGCGGGGCCCTG
TTGAGACCACTCGTTTCACATCTCGGCGTTTTTTCAATGGTTTAG
Right flanking sequence: Indices 15004 -- 15503
CTCGGGCGACTCGGGCGGCGTCAGGTACTCGTAGGGAATCCCCTTGAACTTGCACCACAACTGGC
GCACGTTGATTCCCACCGCGTCCGCGATACACTCGCACTTGTGGGTCTTTTCCGCGATGGGGAAC
CAGTCGTCGAGCGCAAAGTTGACCAGCTCCGCCAAGTTGTACCCGTAGTTGAACCCAGCGTGGTA
GCCGTAGGGGTAGGTGATGACGAACTCGCCCTCGTGGTGGGTGATGTGGTTGACGGGGATGTCGT
GCTTGGCCAAGTACTGCGGCAGCACCATAAACGTCTTGTGGCGCAAAAACTCGGGGCACTGGCGG
TACTCGTCGGCAAACTCCTCCTTGAGCACCTCGAAGAACCGCTGGTGGTGCGCCTGGGGGATCAG
ATACCACTGCTTGGGGGCGCCAAAGTGGATGTAGTTGATCAGATACAAGTCCTGGTCCTCCAAGT
GCCAGGCAAACGTCGCCTTCCACAACCCCGCATACAAATAGGCGT
Found at i:16274 original size:20 final size:21
Alignment explanation
Indices: 16237--16278 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
16227 TGGATGCAAT
*
16237 AGGGGTAGGGGTGGTGGAGGC
1 AGGGGTAGGCGTGGTGGAGGC
16258 AGGGGTAGGCG-GGTGGAGGC
1 AGGGGTAGGCGTGGTGGAGGC
16278 A
1 A
16279 CGGTTTGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.17, C:0.07, G:0.64, T:0.12
Consensus pattern (21 bp):
AGGGGTAGGCGTGGTGGAGGC
Left flanking sequence: Indices 15737 -- 16236
TGGTCCATCTGCTCAATCGCCAGCGGGCGGGCCTCGGGGTCCTTTATTTTACTCTTTGGAGGCTG
GAAGTTCAGCTGGGCACTGGTGTGTTTCCACTGCCAGATGTTGTACTTGCGGCCGCGCTCTACGT
TCTGCTGGGCATACACCCCCAGCGAACACAGGTTGATGTGCTGGACAATGGGGTTCTTGATGGTG
ACGGCGTCCAAGTTGTCGCGGGTGTACACCCGTTGCACTTTTCGCAACCATTCGCGCGGAGGCAC
CACTTTCACGATCCCCAGCTCCATCCCGTAGCGGTTGATGGCCTTGTTGAAGCGGTAGAAGTCGG
CGAACTCCAGAGCCGAGGGGTAGAACACGGGCACTCCCCCCACGTACTCCCGTGGAGCAACACTG
AGGGGTCTGGTATCGAACATCGTATAGGGTTTTGATGGGTGGCCTGACCGGTGAAATGTGTCAGT
GCGCGTGGTGTATACAGGACGGGGGAACGGGTAGGTGGATGCAAT
Right flanking sequence: Indices 16279 -- 16778
CGGTTTGGTCGGGAGGTTGGGAAGTGGGGAGGGTTGGGCGTCACGAGGGCGCGTTTGTGGCGGTT
TGTTTTGTAAACGTACCTGCTCCACCGTTGTGACCTTGCCGGATCGGGCTAAGCGAGGAATGGTA
GCGCCGAGGAAAATCTGGGGTAGTGACCGGGTAGGGGGTGAGAAGCAATTGGGTTGCGGTGGTCA
CGGGTGGGTTAAAGTAAGGGGGTTTTGGTGTAGCAATTGTCCACGTTCGGTGACTACGGTAGTTG
GTTCAAGTTGGTCAAGTTGGTTCAAGTTGGTTTAGACGGGTATCGACAAGGGATGGATACGAGTA
GTGTTACATCAGACGATAGCAACCTCTACACACAACGTACACACACTGGACACACAATGTACATA
CACTGGACACACTCTACATACTCCACACTCTACATACTCCACTCTACATACTCCACACTCTACAT
ACTCTGTCTTCCCCAGTGAGCCATAGTCCTACATTCTCGCCCAGT
Found at i:16555 original size:9 final size:10
Alignment explanation
Indices: 16534--16570 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
16524 TGACTACGGT
16534 AGTTGGTTCA
1 AGTTGGTTCA
16544 AGTTGG-TCA
1 AGTTGGTTCA
16553 AGTTGGTTCA
1 AGTTGGTTCA
16563 AGTTGGTT
1 AGTTGGTT
16571 TAGACGGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.19, C:0.08, G:0.32, T:0.41
Consensus pattern (10 bp):
AGTTGGTTCA
Left flanking sequence: Indices 16034 -- 16533
ATGGCCTTGTTGAAGCGGTAGAAGTCGGCGAACTCCAGAGCCGAGGGGTAGAACACGGGCACTCC
CCCCACGTACTCCCGTGGAGCAACACTGAGGGGTCTGGTATCGAACATCGTATAGGGTTTTGATG
GGTGGCCTGACCGGTGAAATGTGTCAGTGCGCGTGGTGTATACAGGACGGGGGAACGGGTAGGTG
GATGCAATAGGGGTAGGGGTGGTGGAGGCAGGGGTAGGCGGGTGGAGGCACGGTTTGGTCGGGAG
GTTGGGAAGTGGGGAGGGTTGGGCGTCACGAGGGCGCGTTTGTGGCGGTTTGTTTTGTAAACGTA
CCTGCTCCACCGTTGTGACCTTGCCGGATCGGGCTAAGCGAGGAATGGTAGCGCCGAGGAAAATC
TGGGGTAGTGACCGGGTAGGGGGTGAGAAGCAATTGGGTTGCGGTGGTCACGGGTGGGTTAAAGT
AAGGGGGTTTTGGTGTAGCAATTGTCCACGTTCGGTGACTACGGT
Right flanking sequence: Indices 16571 -- 17070
TAGACGGGTATCGACAAGGGATGGATACGAGTAGTGTTACATCAGACGATAGCAACCTCTACACA
CAACGTACACACACTGGACACACAATGTACATACACTGGACACACTCTACATACTCCACACTCTA
CATACTCCACTCTACATACTCCACACTCTACATACTCTGTCTTCCCCAGTGAGCCATAGTCCTAC
ATTCTCGCCCAGTGACCGCTCCAGACGCGTCTCACCTTCGTATTTCCACCCCTTTTGGTCACCAC
CGCGAATCCGGGTGAATGCACATGACCACCCTGTTACTGGGAACACACCCGTGCCCCTTTCTCCG
CACCGAGCCACCCGCCAACCCGCTACTGATCAGGGCAAACTCCGACCCGTAACGGGCATGGCTCG
ATTACGTAAGCGAACCGTCCACAGTGACCGTGGTCGGCAAACGTCCACTATACCACCACTATAGC
ACCTAAAAGACACTAGATCGAGCCTCATTTACCACCTTCTTTCAC
Found at i:16659 original size:22 final size:22
Alignment explanation
Indices: 16631--16680 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
16621 AGCAACCTCT
16631 ACACACAACGTACACACACTGG
1 ACACACAACGTACACACACTGG
* *
16653 ACACACAATGTACATACACTGG
1 ACACACAACGTACACACACTGG
16675 ACACAC
1 ACACAC
16681 TCTACATACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.42, C:0.34, G:0.12, T:0.12
Consensus pattern (22 bp):
ACACACAACGTACACACACTGG
Left flanking sequence: Indices 16131 -- 16630
GTCTGGTATCGAACATCGTATAGGGTTTTGATGGGTGGCCTGACCGGTGAAATGTGTCAGTGCGC
GTGGTGTATACAGGACGGGGGAACGGGTAGGTGGATGCAATAGGGGTAGGGGTGGTGGAGGCAGG
GGTAGGCGGGTGGAGGCACGGTTTGGTCGGGAGGTTGGGAAGTGGGGAGGGTTGGGCGTCACGAG
GGCGCGTTTGTGGCGGTTTGTTTTGTAAACGTACCTGCTCCACCGTTGTGACCTTGCCGGATCGG
GCTAAGCGAGGAATGGTAGCGCCGAGGAAAATCTGGGGTAGTGACCGGGTAGGGGGTGAGAAGCA
ATTGGGTTGCGGTGGTCACGGGTGGGTTAAAGTAAGGGGGTTTTGGTGTAGCAATTGTCCACGTT
CGGTGACTACGGTAGTTGGTTCAAGTTGGTCAAGTTGGTTCAAGTTGGTTTAGACGGGTATCGAC
AAGGGATGGATACGAGTAGTGTTACATCAGACGATAGCAACCTCT
Right flanking sequence: Indices 16681 -- 17180
TCTACATACTCCACACTCTACATACTCCACTCTACATACTCCACACTCTACATACTCTGTCTTCC
CCAGTGAGCCATAGTCCTACATTCTCGCCCAGTGACCGCTCCAGACGCGTCTCACCTTCGTATTT
CCACCCCTTTTGGTCACCACCGCGAATCCGGGTGAATGCACATGACCACCCTGTTACTGGGAACA
CACCCGTGCCCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTACTGATCAGGGCAAACTCCGA
CCCGTAACGGGCATGGCTCGATTACGTAAGCGAACCGTCCACAGTGACCGTGGTCGGCAAACGTC
CACTATACCACCACTATAGCACCTAAAAGACACTAGATCGAGCCTCATTTACCACCTTCTTTCAC
CCCCCACCCTCTTCTTCCCCATTTCCCGTCTCTTCCCTTCTCGTCCACCTACTCGTCCGTCTCAT
CCCAAGCCCCGATTACCCCTCGCACTACCAAAAGCAAACCAAGCG
Found at i:16686 original size:20 final size:21
Alignment explanation
Indices: 16631--16689 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
16621 AGCAACCTCT
* *
16631 ACACACAACGTACACACACTGG
1 ACACACATC-TACATACACTGG
*
16653 ACACACAATGTACATACACTGG
1 ACACAC-ATCTACATACACTGG
16675 ACACAC-TCTACATAC
1 ACACACATCTACATAC
16690 TCCACACTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 8 0.25
22 23 0.72
23 1 0.03
ACGTcount: A:0.41, C:0.34, G:0.10, T:0.15
Consensus pattern (21 bp):
ACACACATCTACATACACTGG
Left flanking sequence: Indices 16131 -- 16630
GTCTGGTATCGAACATCGTATAGGGTTTTGATGGGTGGCCTGACCGGTGAAATGTGTCAGTGCGC
GTGGTGTATACAGGACGGGGGAACGGGTAGGTGGATGCAATAGGGGTAGGGGTGGTGGAGGCAGG
GGTAGGCGGGTGGAGGCACGGTTTGGTCGGGAGGTTGGGAAGTGGGGAGGGTTGGGCGTCACGAG
GGCGCGTTTGTGGCGGTTTGTTTTGTAAACGTACCTGCTCCACCGTTGTGACCTTGCCGGATCGG
GCTAAGCGAGGAATGGTAGCGCCGAGGAAAATCTGGGGTAGTGACCGGGTAGGGGGTGAGAAGCA
ATTGGGTTGCGGTGGTCACGGGTGGGTTAAAGTAAGGGGGTTTTGGTGTAGCAATTGTCCACGTT
CGGTGACTACGGTAGTTGGTTCAAGTTGGTCAAGTTGGTTCAAGTTGGTTTAGACGGGTATCGAC
AAGGGATGGATACGAGTAGTGTTACATCAGACGATAGCAACCTCT
Right flanking sequence: Indices 16690 -- 17189
TCCACACTCTACATACTCCACTCTACATACTCCACACTCTACATACTCTGTCTTCCCCAGTGAGC
CATAGTCCTACATTCTCGCCCAGTGACCGCTCCAGACGCGTCTCACCTTCGTATTTCCACCCCTT
TTGGTCACCACCGCGAATCCGGGTGAATGCACATGACCACCCTGTTACTGGGAACACACCCGTGC
CCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTACTGATCAGGGCAAACTCCGACCCGTAACG
GGCATGGCTCGATTACGTAAGCGAACCGTCCACAGTGACCGTGGTCGGCAAACGTCCACTATACC
ACCACTATAGCACCTAAAAGACACTAGATCGAGCCTCATTTACCACCTTCTTTCACCCCCCACCC
TCTTCTTCCCCATTTCCCGTCTCTTCCCTTCTCGTCCACCTACTCGTCCGTCTCATCCCAAGCCC
CGATTACCCCTCGCACTACCAAAAGCAAACCAAGCGAAGGAAGTC
Found at i:16695 original size:16 final size:16
Alignment explanation
Indices: 16676--16737 Score: 110
Period size: 16 Copynumber: 4.0 Consensus size: 16
16666 ATACACTGGA
16676 CACACTCTACATACTC
1 CACACTCTACATACTC
16692 CACACTCTACATACT-
1 CACACTCTACATACTC
16707 C-CACTCTACATACTC
1 CACACTCTACATACTC
16722 CACACTCTACATACTC
1 CACACTCTACATACTC
16738 TGTCTTCCCC
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
14 13 0.30
15 2 0.05
16 29 0.66
ACGTcount: A:0.31, C:0.44, G:0.00, T:0.26
Consensus pattern (16 bp):
CACACTCTACATACTC
Left flanking sequence: Indices 16176 -- 16675
GGTGAAATGTGTCAGTGCGCGTGGTGTATACAGGACGGGGGAACGGGTAGGTGGATGCAATAGGG
GTAGGGGTGGTGGAGGCAGGGGTAGGCGGGTGGAGGCACGGTTTGGTCGGGAGGTTGGGAAGTGG
GGAGGGTTGGGCGTCACGAGGGCGCGTTTGTGGCGGTTTGTTTTGTAAACGTACCTGCTCCACCG
TTGTGACCTTGCCGGATCGGGCTAAGCGAGGAATGGTAGCGCCGAGGAAAATCTGGGGTAGTGAC
CGGGTAGGGGGTGAGAAGCAATTGGGTTGCGGTGGTCACGGGTGGGTTAAAGTAAGGGGGTTTTG
GTGTAGCAATTGTCCACGTTCGGTGACTACGGTAGTTGGTTCAAGTTGGTCAAGTTGGTTCAAGT
TGGTTTAGACGGGTATCGACAAGGGATGGATACGAGTAGTGTTACATCAGACGATAGCAACCTCT
ACACACAACGTACACACACTGGACACACAATGTACATACACTGGA
Right flanking sequence: Indices 16738 -- 17237
TGTCTTCCCCAGTGAGCCATAGTCCTACATTCTCGCCCAGTGACCGCTCCAGACGCGTCTCACCT
TCGTATTTCCACCCCTTTTGGTCACCACCGCGAATCCGGGTGAATGCACATGACCACCCTGTTAC
TGGGAACACACCCGTGCCCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTACTGATCAGGGCA
AACTCCGACCCGTAACGGGCATGGCTCGATTACGTAAGCGAACCGTCCACAGTGACCGTGGTCGG
CAAACGTCCACTATACCACCACTATAGCACCTAAAAGACACTAGATCGAGCCTCATTTACCACCT
TCTTTCACCCCCCACCCTCTTCTTCCCCATTTCCCGTCTCTTCCCTTCTCGTCCACCTACTCGTC
CGTCTCATCCCAAGCCCCGATTACCCCTCGCACTACCAAAAGCAAACCAAGCGAAGGAAGTCCAC
TCCCAAAAAGCACCGCGCCGAGCCCCGACCGCCTCCACTGGCCAC
Found at i:16714 original size:30 final size:30
Alignment explanation
Indices: 16678--16737 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
16668 ACACTGGACA
16678 CACTCTACATACTCCACACTCTACATACTC
1 CACTCTACATACTCCACACTCTACATACTC
16708 CACTCTACATACTCCACACTCTACATACTC
1 CACTCTACATACTCCACACTCTACATACTC
16738 TGTCTTCCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.43, G:0.00, T:0.27
Consensus pattern (30 bp):
CACTCTACATACTCCACACTCTACATACTC
Left flanking sequence: Indices 16178 -- 16677
TGAAATGTGTCAGTGCGCGTGGTGTATACAGGACGGGGGAACGGGTAGGTGGATGCAATAGGGGT
AGGGGTGGTGGAGGCAGGGGTAGGCGGGTGGAGGCACGGTTTGGTCGGGAGGTTGGGAAGTGGGG
AGGGTTGGGCGTCACGAGGGCGCGTTTGTGGCGGTTTGTTTTGTAAACGTACCTGCTCCACCGTT
GTGACCTTGCCGGATCGGGCTAAGCGAGGAATGGTAGCGCCGAGGAAAATCTGGGGTAGTGACCG
GGTAGGGGGTGAGAAGCAATTGGGTTGCGGTGGTCACGGGTGGGTTAAAGTAAGGGGGTTTTGGT
GTAGCAATTGTCCACGTTCGGTGACTACGGTAGTTGGTTCAAGTTGGTCAAGTTGGTTCAAGTTG
GTTTAGACGGGTATCGACAAGGGATGGATACGAGTAGTGTTACATCAGACGATAGCAACCTCTAC
ACACAACGTACACACACTGGACACACAATGTACATACACTGGACA
Right flanking sequence: Indices 16738 -- 17237
TGTCTTCCCCAGTGAGCCATAGTCCTACATTCTCGCCCAGTGACCGCTCCAGACGCGTCTCACCT
TCGTATTTCCACCCCTTTTGGTCACCACCGCGAATCCGGGTGAATGCACATGACCACCCTGTTAC
TGGGAACACACCCGTGCCCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTACTGATCAGGGCA
AACTCCGACCCGTAACGGGCATGGCTCGATTACGTAAGCGAACCGTCCACAGTGACCGTGGTCGG
CAAACGTCCACTATACCACCACTATAGCACCTAAAAGACACTAGATCGAGCCTCATTTACCACCT
TCTTTCACCCCCCACCCTCTTCTTCCCCATTTCCCGTCTCTTCCCTTCTCGTCCACCTACTCGTC
CGTCTCATCCCAAGCCCCGATTACCCCTCGCACTACCAAAAGCAAACCAAGCGAAGGAAGTCCAC
TCCCAAAAAGCACCGCGCCGAGCCCCGACCGCCTCCACTGGCCAC
Found at i:17968 original size:29 final size:29
Alignment explanation
Indices: 17935--18039 Score: 111
Period size: 29 Copynumber: 3.4 Consensus size: 29
17925 CGCAGGATTA
* *
17935 GAGAGAAGGTAGGATCAGAAAGAAGGTAG
1 GAGAGAAGGTAGGATCAGAGAGAAAGTAG
* *
17964 GAGAGAAGGTAGGAACAGAGAGAACGTAGAG
1 GAGAGAAGGTAGGATCAGAGAGAAAGT--AG
* *
17995 TCAGAGAGAAGGTAGGATCAGGGAGAAAGTAA
1 ---GAGAGAAGGTAGGATCAGAGAGAAAGTAG
18027 GAGAGAAGGTAGG
1 GAGAGAAGGTAGG
18040 GGAGAAGGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
29 37 0.58
31 2 0.03
32 1 0.02
34 24 0.38
ACGTcount: A:0.44, C:0.05, G:0.42, T:0.10
Consensus pattern (29 bp):
GAGAGAAGGTAGGATCAGAGAGAAAGTAG
Left flanking sequence: Indices 17435 -- 17934
GCCCTACGGGTCGTTGATAAACAACTTGATGTACGGCCCGGTGACCTGGGTGGCCCATATGGGGG
TCTCTTACCGGGTGGCAAAGTGGTTGAACGCCAGGTTGTTGGACGACAAGATCGAGGATGACTAC
AAGAAGTATATTTAGTGATGGTTTACGACTAATAAATGCATAATGATGGTAGAAGCGGTGATTGG
GCGTGGTTGGGGAGGACGGTGATGACGTTGATCTCACGTGATCAAAAGTGGTGATGGAATGGAGG
AAGGGAGGAAGGGAGGATCAGAGAGAAGGTAGGAGAAAAGTATGAGAAAAGGGAGAGTTAGAAAA
GTGACTGGCGTCAGGGTTTTACTAGTTGGACCAGCTGAATTCCAGAACTTGAAATCTACTATCAC
ACCTTCCCGACCTGCGTTAGGGGACTTGCTTTCATCCAATTCCACCAGCTGGCTCCACACACAGC
TAATTCAATACAAGAGAAGGTAGGATTAGAGAGAACGCAGGATTA
Right flanking sequence: Indices 18040 -- 18539
GGAGAAGGTAGCATCAGAGAAAGGCTAGACCAGAAAGGAAGGTAGGATCATGGAGATCCGCTAGT
ACTCGTGGTATAGCGCTAATAGCCATCACTACCACGCTATATAGTCCATTGCACAGAAGTATGGA
CTCGTACTATCCTCTACCCTGTCCATTTGCTCGGTATCATTACTCATTAGTCATTAAATAAATAG
ATGTAGTTAGCCCGCCTGTCTCGCCTCCTACTGGCTGCTGGGCACTTGGACCTGGTGCTGGGTGA
TCTCCACCGTGCACAACTGGCCGATGATCGGCTCAAGCTCCTCGTCCTCGGAGTCGGACACCACC
GACTCGTCCTTGGCCACGGGACTGGCCTTGAACACGTGCTCGCCCCGGCTCCACTCGCCCTCGAA
CCCGTAGCCCGCGATCCGGCTGGTGTACTGCGGGAGAAGCTGGCTGGCCGGCTCGAGGGTGGGAG
AGAGCTCAGCACGCGCCGCTGGCTGGGCCGCTGGCTGGGCTGCGG
Found at i:18001 original size:63 final size:63
Alignment explanation
Indices: 17902--18039 Score: 188
Period size: 63 Copynumber: 2.2 Consensus size: 63
17892 ATTCAATACA
** * * *
17902 AGAGAAGGTAGGATTAGAGAGAACGCAGGATTAGAGAGAAGGTAGGATCAGAAAGAAGGTAGG
1 AGAGAAGGTAGGAACAGAGAGAACGCAGGATCAGAGAGAAGGTAGGATCAGAAAGAAAGTAAG
* **
17965 AGAGAAGGTAGGAACAGAGAGAACGTA-GAGTCAGAGAGAAGGTAGGATCAGGGAGAAAGTAAG
1 AGAGAAGGTAGGAACAGAGAGAACGCAGGA-TCAGAGAGAAGGTAGGATCAGAAAGAAAGTAAG
18028 AGAGAAGGTAGG
1 AGAGAAGGTAGG
18040 GGAGAAGGTA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
62 2 0.03
63 64 0.97
ACGTcount: A:0.43, C:0.05, G:0.41, T:0.11
Consensus pattern (63 bp):
AGAGAAGGTAGGAACAGAGAGAACGCAGGATCAGAGAGAAGGTAGGATCAGAAAGAAAGTAAG
Left flanking sequence: Indices 17402 -- 17901
CGGGTGGGTGGTTGCCAAGATCATGTACTACCAGCCCTACGGGTCGTTGATAAACAACTTGATGT
ACGGCCCGGTGACCTGGGTGGCCCATATGGGGGTCTCTTACCGGGTGGCAAAGTGGTTGAACGCC
AGGTTGTTGGACGACAAGATCGAGGATGACTACAAGAAGTATATTTAGTGATGGTTTACGACTAA
TAAATGCATAATGATGGTAGAAGCGGTGATTGGGCGTGGTTGGGGAGGACGGTGATGACGTTGAT
CTCACGTGATCAAAAGTGGTGATGGAATGGAGGAAGGGAGGAAGGGAGGATCAGAGAGAAGGTAG
GAGAAAAGTATGAGAAAAGGGAGAGTTAGAAAAGTGACTGGCGTCAGGGTTTTACTAGTTGGACC
AGCTGAATTCCAGAACTTGAAATCTACTATCACACCTTCCCGACCTGCGTTAGGGGACTTGCTTT
CATCCAATTCCACCAGCTGGCTCCACACACAGCTAATTCAATACA
Right flanking sequence: Indices 18040 -- 18539
GGAGAAGGTAGCATCAGAGAAAGGCTAGACCAGAAAGGAAGGTAGGATCATGGAGATCCGCTAGT
ACTCGTGGTATAGCGCTAATAGCCATCACTACCACGCTATATAGTCCATTGCACAGAAGTATGGA
CTCGTACTATCCTCTACCCTGTCCATTTGCTCGGTATCATTACTCATTAGTCATTAAATAAATAG
ATGTAGTTAGCCCGCCTGTCTCGCCTCCTACTGGCTGCTGGGCACTTGGACCTGGTGCTGGGTGA
TCTCCACCGTGCACAACTGGCCGATGATCGGCTCAAGCTCCTCGTCCTCGGAGTCGGACACCACC
GACTCGTCCTTGGCCACGGGACTGGCCTTGAACACGTGCTCGCCCCGGCTCCACTCGCCCTCGAA
CCCGTAGCCCGCGATCCGGCTGGTGTACTGCGGGAGAAGCTGGCTGGCCGGCTCGAGGGTGGGAG
AGAGCTCAGCACGCGCCGCTGGCTGGGCCGCTGGCTGGGCTGCGG
Found at i:18020 original size:19 final size:17
Alignment explanation
Indices: 17902--18021 Score: 117
Period size: 17 Copynumber: 7.4 Consensus size: 17
17892 ATTCAATACA
*
17902 AGAGAAGGTAGGATTAG
1 AGAGAAGGTAGGATCAG
* * *
17919 AGAGAACGCAGGATTAG
1 AGAGAAGGTAGGATCAG
17936 AGAGAAGGTAGGATCAG
1 AGAGAAGGTAGGATCAG
*
17953 AAAGAAGGTA-G----G
1 AGAGAAGGTAGGATCAG
*
17965 AGAGAAGGTAGGAACAG
1 AGAGAAGGTAGGATCAG
*
17982 AGAGAACGTA-GAGTCAG
1 AGAGAAGGTAGGA-TCAG
17999 AGAGAAGGTAGGATCAG
1 AGAGAAGGTAGGATCAG
*
18016 GGAGAA
1 AGAGAA
18022 AGTAAGAGAG
Statistics
Matches: 85, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
12 10 0.12
13 1 0.01
16 3 0.04
17 69 0.81
18 2 0.02
ACGTcount: A:0.43, C:0.06, G:0.40, T:0.11
Consensus pattern (17 bp):
AGAGAAGGTAGGATCAG
Left flanking sequence: Indices 17402 -- 17901
CGGGTGGGTGGTTGCCAAGATCATGTACTACCAGCCCTACGGGTCGTTGATAAACAACTTGATGT
ACGGCCCGGTGACCTGGGTGGCCCATATGGGGGTCTCTTACCGGGTGGCAAAGTGGTTGAACGCC
AGGTTGTTGGACGACAAGATCGAGGATGACTACAAGAAGTATATTTAGTGATGGTTTACGACTAA
TAAATGCATAATGATGGTAGAAGCGGTGATTGGGCGTGGTTGGGGAGGACGGTGATGACGTTGAT
CTCACGTGATCAAAAGTGGTGATGGAATGGAGGAAGGGAGGAAGGGAGGATCAGAGAGAAGGTAG
GAGAAAAGTATGAGAAAAGGGAGAGTTAGAAAAGTGACTGGCGTCAGGGTTTTACTAGTTGGACC
AGCTGAATTCCAGAACTTGAAATCTACTATCACACCTTCCCGACCTGCGTTAGGGGACTTGCTTT
CATCCAATTCCACCAGCTGGCTCCACACACAGCTAATTCAATACA
Right flanking sequence: Indices 18022 -- 18521
AGTAAGAGAGAAGGTAGGGGAGAAGGTAGCATCAGAGAAAGGCTAGACCAGAAAGGAAGGTAGGA
TCATGGAGATCCGCTAGTACTCGTGGTATAGCGCTAATAGCCATCACTACCACGCTATATAGTCC
ATTGCACAGAAGTATGGACTCGTACTATCCTCTACCCTGTCCATTTGCTCGGTATCATTACTCAT
TAGTCATTAAATAAATAGATGTAGTTAGCCCGCCTGTCTCGCCTCCTACTGGCTGCTGGGCACTT
GGACCTGGTGCTGGGTGATCTCCACCGTGCACAACTGGCCGATGATCGGCTCAAGCTCCTCGTCC
TCGGAGTCGGACACCACCGACTCGTCCTTGGCCACGGGACTGGCCTTGAACACGTGCTCGCCCCG
GCTCCACTCGCCCTCGAACCCGTAGCCCGCGATCCGGCTGGTGTACTGCGGGAGAAGCTGGCTGG
CCGGCTCGAGGGTGGGAGAGAGCTCAGCACGCGCCGCTGGCTGGG
Found at i:18058 original size:75 final size:75
Alignment explanation
Indices: 17955--18095 Score: 187
Period size: 75 Copynumber: 1.9 Consensus size: 75
17945 AGGATCAGAA
* * *
17955 AGAAGGTAGGAGAGAAGGTAGGAACAGAGAGAACG-TAGAGTCAGAGA-GAAGGTAGGATCAGGG
1 AGAAGGTAGGAGAGAAGGTAGCAACAGAGA-AACGCTAGA-CCAGAAAGGAAGGTAGGATCAGGG
18018 AGAAAGTAAGAG
64 AGAAAGTAAGAG
* * * *
18030 AGAAGGTAGGGGAGAAGGTAGCATCAGAGAAAGGCTAGACCAGAAAGGAAGGTAGGATCATGGAG
1 AGAAGGTAGGAGAGAAGGTAGCAACAGAGAAACGCTAGACCAGAAAGGAAGGTAGGATCAGGGAG
18095 A
66 A
18096 TCCGCTAGTA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
74 8 0.14
75 49 0.86
ACGTcount: A:0.43, C:0.07, G:0.40, T:0.10
Consensus pattern (75 bp):
AGAAGGTAGGAGAGAAGGTAGCAACAGAGAAACGCTAGACCAGAAAGGAAGGTAGGATCAGGGAG
AAAGTAAGAG
Left flanking sequence: Indices 17455 -- 17954
ACAACTTGATGTACGGCCCGGTGACCTGGGTGGCCCATATGGGGGTCTCTTACCGGGTGGCAAAG
TGGTTGAACGCCAGGTTGTTGGACGACAAGATCGAGGATGACTACAAGAAGTATATTTAGTGATG
GTTTACGACTAATAAATGCATAATGATGGTAGAAGCGGTGATTGGGCGTGGTTGGGGAGGACGGT
GATGACGTTGATCTCACGTGATCAAAAGTGGTGATGGAATGGAGGAAGGGAGGAAGGGAGGATCA
GAGAGAAGGTAGGAGAAAAGTATGAGAAAAGGGAGAGTTAGAAAAGTGACTGGCGTCAGGGTTTT
ACTAGTTGGACCAGCTGAATTCCAGAACTTGAAATCTACTATCACACCTTCCCGACCTGCGTTAG
GGGACTTGCTTTCATCCAATTCCACCAGCTGGCTCCACACACAGCTAATTCAATACAAGAGAAGG
TAGGATTAGAGAGAACGCAGGATTAGAGAGAAGGTAGGATCAGAA
Right flanking sequence: Indices 18096 -- 18595
TCCGCTAGTACTCGTGGTATAGCGCTAATAGCCATCACTACCACGCTATATAGTCCATTGCACAG
AAGTATGGACTCGTACTATCCTCTACCCTGTCCATTTGCTCGGTATCATTACTCATTAGTCATTA
AATAAATAGATGTAGTTAGCCCGCCTGTCTCGCCTCCTACTGGCTGCTGGGCACTTGGACCTGGT
GCTGGGTGATCTCCACCGTGCACAACTGGCCGATGATCGGCTCAAGCTCCTCGTCCTCGGAGTCG
GACACCACCGACTCGTCCTTGGCCACGGGACTGGCCTTGAACACGTGCTCGCCCCGGCTCCACTC
GCCCTCGAACCCGTAGCCCGCGATCCGGCTGGTGTACTGCGGGAGAAGCTGGCTGGCCGGCTCGA
GGGTGGGAGAGAGCTCAGCACGCGCCGCTGGCTGGGCCGCTGGCTGGGCTGCGGGGAAGTCCAGG
TCGTAGCCCACGCTTTCGACCCCGCTGACGGCCCGCGAGAGGTTG
Found at i:18526 original size:12 final size:12
Alignment explanation
Indices: 18509--18534 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18499 CTCAGCACGC
18509 GCCGCTGGCTGG
1 GCCGCTGGCTGG
18521 GCCGCTGGCTGG
1 GCCGCTGGCTGG
18533 GC
1 GC
18535 TGCGGGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.35, G:0.50, T:0.15
Consensus pattern (12 bp):
GCCGCTGGCTGG
Left flanking sequence: Indices 18009 -- 18508
GGATCAGGGAGAAAGTAAGAGAGAAGGTAGGGGAGAAGGTAGCATCAGAGAAAGGCTAGACCAGA
AAGGAAGGTAGGATCATGGAGATCCGCTAGTACTCGTGGTATAGCGCTAATAGCCATCACTACCA
CGCTATATAGTCCATTGCACAGAAGTATGGACTCGTACTATCCTCTACCCTGTCCATTTGCTCGG
TATCATTACTCATTAGTCATTAAATAAATAGATGTAGTTAGCCCGCCTGTCTCGCCTCCTACTGG
CTGCTGGGCACTTGGACCTGGTGCTGGGTGATCTCCACCGTGCACAACTGGCCGATGATCGGCTC
AAGCTCCTCGTCCTCGGAGTCGGACACCACCGACTCGTCCTTGGCCACGGGACTGGCCTTGAACA
CGTGCTCGCCCCGGCTCCACTCGCCCTCGAACCCGTAGCCCGCGATCCGGCTGGTGTACTGCGGG
AGAAGCTGGCTGGCCGGCTCGAGGGTGGGAGAGAGCTCAGCACGC
Right flanking sequence: Indices 18535 -- 19034
TGCGGGGAAGTCCAGGTCGTAGCCCACGCTTTCGACCCCGCTGACGGCCCGCGAGAGGTTGGGCT
TGCGCTTGGTGGGGCTCTGGGACGGCGTCTGGCCGGGACTGATCACTACGGAGCCCTTTACGGGG
CTTCTCTGGGGCGAGTCGCCAAAGCTGACCCCGATAACCAGGCCGGGGAAGAGCCGGCGGGGCGA
GAGATGCGGAGTGGGGCCTCGCTGGAGCCGCGGGATGGGCGTGCTGGTGTGCATAAACAGCTTGA
GCGGCGACCCAGACGGCGACACCACCAGGTTTCTGCTTCGAACCGGGCTCAGGACCGCTTTCTTC
AACGGGCTCAGGACCGCTTTCTTCAACGGGCTCACTTTGTGGGGCATCCTAAACTTTCCCGGCGA
GGATTGCGGGCCGTTGAGCGGGCTGCTCGAGGGCACAAGCACCCTGGGCAGGCCCCGAGGCAGAG
CCCTGGCCAGCTCCTCGAGCACCTGCGAGCCCACGAGGAACTCTT
Found at i:18865 original size:24 final size:24
Alignment explanation
Indices: 18838--18893 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
18828 TGCTTCGAAC
18838 CGGGCTCAGGACCGCTTTCTTCAA
1 CGGGCTCAGGACCGCTTTCTTCAA
18862 CGGGCTCAGGACCGCTTTCTTCAA
1 CGGGCTCAGGACCGCTTTCTTCAA
18886 CGGGCTCA
1 CGGGCTCA
18894 CTTTGTGGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.16, C:0.34, G:0.27, T:0.23
Consensus pattern (24 bp):
CGGGCTCAGGACCGCTTTCTTCAA
Left flanking sequence: Indices 18338 -- 18837
TCCTCGTCCTCGGAGTCGGACACCACCGACTCGTCCTTGGCCACGGGACTGGCCTTGAACACGTG
CTCGCCCCGGCTCCACTCGCCCTCGAACCCGTAGCCCGCGATCCGGCTGGTGTACTGCGGGAGAA
GCTGGCTGGCCGGCTCGAGGGTGGGAGAGAGCTCAGCACGCGCCGCTGGCTGGGCCGCTGGCTGG
GCTGCGGGGAAGTCCAGGTCGTAGCCCACGCTTTCGACCCCGCTGACGGCCCGCGAGAGGTTGGG
CTTGCGCTTGGTGGGGCTCTGGGACGGCGTCTGGCCGGGACTGATCACTACGGAGCCCTTTACGG
GGCTTCTCTGGGGCGAGTCGCCAAAGCTGACCCCGATAACCAGGCCGGGGAAGAGCCGGCGGGGC
GAGAGATGCGGAGTGGGGCCTCGCTGGAGCCGCGGGATGGGCGTGCTGGTGTGCATAAACAGCTT
GAGCGGCGACCCAGACGGCGACACCACCAGGTTTCTGCTTCGAAC
Right flanking sequence: Indices 18894 -- 19393
CTTTGTGGGGCATCCTAAACTTTCCCGGCGAGGATTGCGGGCCGTTGAGCGGGCTGCTCGAGGGC
ACAAGCACCCTGGGCAGGCCCCGAGGCAGAGCCCTGGCCAGCTCCTCGAGCACCTGCGAGCCCAC
GAGGAACTCTTTGGCCGTGGAGTAGCCCTCGCTGTCGCTGTCGTCGATGAACGCGAGGTTGACGG
TGTTGGGTTTGGTGGGGGACTCTTCGAGATTGGACAGCTGGGGCACCAACACCGTGGGGGGCTCG
AGCGATAGGCGGCGCTGGGCCGAGGCCACGGGGGAGGCGTGCGAGTCTACGGGTGCCTCTGGCGA
GTCTGGAGCTTGCTCCTGGGTTTGTGGGGGCGATTCTGGCCGGTTGAGTGCCAGTCGGGGGGATT
CTGGCGGGTCGGTGAAGCTCAGGCTCGGGTTTAGCGGTGGGTTGGAGCACTGAGACGGGTCTATA
TGACTCCCTGTGTCCCCACTGCTCAGCTCCCCGTCTTCAGCAGCG
Found at i:19417 original size:12 final size:12
Alignment explanation
Indices: 19402--19473 Score: 126
Period size: 12 Copynumber: 6.0 Consensus size: 12
19392 CGCTCTGAGG
19402 CCTGCTCAGATC
1 CCTGCTCAGATC
19414 CCTGCTCAGATC
1 CCTGCTCAGATC
*
19426 CCTGCTCGGATC
1 CCTGCTCAGATC
*
19438 CCTGCTCAGATT
1 CCTGCTCAGATC
19450 CCTGCTCAGATC
1 CCTGCTCAGATC
19462 CCTGCTCAGATC
1 CCTGCTCAGATC
19474 AACGCGCCGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 56 1.00
ACGTcount: A:0.15, C:0.40, G:0.18, T:0.26
Consensus pattern (12 bp):
CCTGCTCAGATC
Left flanking sequence: Indices 18902 -- 19401
GGCATCCTAAACTTTCCCGGCGAGGATTGCGGGCCGTTGAGCGGGCTGCTCGAGGGCACAAGCAC
CCTGGGCAGGCCCCGAGGCAGAGCCCTGGCCAGCTCCTCGAGCACCTGCGAGCCCACGAGGAACT
CTTTGGCCGTGGAGTAGCCCTCGCTGTCGCTGTCGTCGATGAACGCGAGGTTGACGGTGTTGGGT
TTGGTGGGGGACTCTTCGAGATTGGACAGCTGGGGCACCAACACCGTGGGGGGCTCGAGCGATAG
GCGGCGCTGGGCCGAGGCCACGGGGGAGGCGTGCGAGTCTACGGGTGCCTCTGGCGAGTCTGGAG
CTTGCTCCTGGGTTTGTGGGGGCGATTCTGGCCGGTTGAGTGCCAGTCGGGGGGATTCTGGCGGG
TCGGTGAAGCTCAGGCTCGGGTTTAGCGGTGGGTTGGAGCACTGAGACGGGTCTATATGACTCCC
TGTGTCCCCACTGCTCAGCTCCCCGTCTTCAGCAGCGCTCTGAGG
Right flanking sequence: Indices 19474 -- 19973
AACGCGCCGCCTTTTGACCGGTGAAGACACCGTCTCAAGCAATTCCGGCGACCGGGTGAGCAAAA
GCGGACTGCCTGTGCCCTGTAAACTGCTCAGTTTGAGCTCAGGAGACCGGAGAGAGTACTGGGAC
GGGTACGGAGGCGAGCTCTGGTGCGGGTTTAGCGGGGAGAAAGGCGAAGGCGAGGCTGCGCCAGA
GTGAGAGTACCCATTGCTATAGGACCCATTGCTATAGTACCCATTGCTACCGGCCTGGGATCTAC
CCTGGGACCCGTGGTGTTCTACACAGTCACCTCCACCGTTTTCATGCTCCTCTGAGCCCTGGATC
GACGGAAGGATCGCCAGAAGCAAGCCGAAGATCGCAGCGCTCTCCCTTTCGCCAGGCTCATACTC
AGGCCCATCAGCCACCTTACCCCTCTCCTTCGACCCACCGGCCAAAAGACTCGGCACAGTGGGCA
CGTCGCTCTCGTCCACCGGCTGCTTGCCCTCGTCATCCTCTTCCT
Found at i:19697 original size:15 final size:15
Alignment explanation
Indices: 19677--19717 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
19667 GAGTGAGAGT
19677 ACCCATTGCTATAGG
1 ACCCATTGCTATAGG
*
19692 ACCCATTGCTATAGT
1 ACCCATTGCTATAGG
19707 ACCCATTGCTA
1 ACCCATTGCTA
19718 CCGGCCTGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (15 bp):
ACCCATTGCTATAGG
Left flanking sequence: Indices 19177 -- 19676
GGCCACGGGGGAGGCGTGCGAGTCTACGGGTGCCTCTGGCGAGTCTGGAGCTTGCTCCTGGGTTT
GTGGGGGCGATTCTGGCCGGTTGAGTGCCAGTCGGGGGGATTCTGGCGGGTCGGTGAAGCTCAGG
CTCGGGTTTAGCGGTGGGTTGGAGCACTGAGACGGGTCTATATGACTCCCTGTGTCCCCACTGCT
CAGCTCCCCGTCTTCAGCAGCGCTCTGAGGCCTGCTCAGATCCCTGCTCAGATCCCTGCTCGGAT
CCCTGCTCAGATTCCTGCTCAGATCCCTGCTCAGATCAACGCGCCGCCTTTTGACCGGTGAAGAC
ACCGTCTCAAGCAATTCCGGCGACCGGGTGAGCAAAAGCGGACTGCCTGTGCCCTGTAAACTGCT
CAGTTTGAGCTCAGGAGACCGGAGAGAGTACTGGGACGGGTACGGAGGCGAGCTCTGGTGCGGGT
TTAGCGGGGAGAAAGGCGAAGGCGAGGCTGCGCCAGAGTGAGAGT
Right flanking sequence: Indices 19718 -- 20217
CCGGCCTGGGATCTACCCTGGGACCCGTGGTGTTCTACACAGTCACCTCCACCGTTTTCATGCTC
CTCTGAGCCCTGGATCGACGGAAGGATCGCCAGAAGCAAGCCGAAGATCGCAGCGCTCTCCCTTT
CGCCAGGCTCATACTCAGGCCCATCAGCCACCTTACCCCTCTCCTTCGACCCACCGGCCAAAAGA
CTCGGCACAGTGGGCACGTCGCTCTCGTCCACCGGCTGCTTGCCCTCGTCATCCTCTTCCTCCAC
CCTCTCTTCCTCCACCCCCTCGAGCACGTGGACCGCCCCAGCCTGAGTCCCGGGCCCGCCCTGGA
AGCTCACTAGCGGCTGGTACTGCACTGGCGCCGGCTCTATCGGGTCTGGCTCGTACTCCGAGTCG
TCCACCTCGAGGATCTCGCCCTCCTGGGTCAATGTAACCACGCCACCTTCGCTACATTCGTCCGA
ATAGCACGATTCTCCGTCGCTCAGAGCGCCTTCTAGATCGTATAG
Found at i:19984 original size:15 final size:15
Alignment explanation
Indices: 19966--19994 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
19956 CCTCGTCATC
19966 CTCTTCCTCCACCCT
1 CTCTTCCTCCACCCT
19981 CTCTTCCTCCACCC
1 CTCTTCCTCCACCC
19995 CCTCGAGCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.62, G:0.00, T:0.31
Consensus pattern (15 bp):
CTCTTCCTCCACCCT
Left flanking sequence: Indices 19466 -- 19965
CTCAGATCAACGCGCCGCCTTTTGACCGGTGAAGACACCGTCTCAAGCAATTCCGGCGACCGGGT
GAGCAAAAGCGGACTGCCTGTGCCCTGTAAACTGCTCAGTTTGAGCTCAGGAGACCGGAGAGAGT
ACTGGGACGGGTACGGAGGCGAGCTCTGGTGCGGGTTTAGCGGGGAGAAAGGCGAAGGCGAGGCT
GCGCCAGAGTGAGAGTACCCATTGCTATAGGACCCATTGCTATAGTACCCATTGCTACCGGCCTG
GGATCTACCCTGGGACCCGTGGTGTTCTACACAGTCACCTCCACCGTTTTCATGCTCCTCTGAGC
CCTGGATCGACGGAAGGATCGCCAGAAGCAAGCCGAAGATCGCAGCGCTCTCCCTTTCGCCAGGC
TCATACTCAGGCCCATCAGCCACCTTACCCCTCTCCTTCGACCCACCGGCCAAAAGACTCGGCAC
AGTGGGCACGTCGCTCTCGTCCACCGGCTGCTTGCCCTCGTCATC
Right flanking sequence: Indices 19995 -- 20494
CCTCGAGCACGTGGACCGCCCCAGCCTGAGTCCCGGGCCCGCCCTGGAAGCTCACTAGCGGCTGG
TACTGCACTGGCGCCGGCTCTATCGGGTCTGGCTCGTACTCCGAGTCGTCCACCTCGAGGATCTC
GCCCTCCTGGGTCAATGTAACCACGCCACCTTCGCTACATTCGTCCGAATAGCACGATTCTCCGT
CGCTCAGAGCGCCTTCTAGATCGTATAGCCACCGTAAATCAGCGTCGCCAAGCAGCGGAGTCTCC
GCAGCCTGGTCCCAGAGCAGCGGAGCTTCTGGAGCTTGAGCTTCTAGAGCTTCTGGAGCTTCTGG
AGCTTCTGGAGCTTGAGCCTCTCCCTCGGGCTCTGGGGTGACTATGAGCGATCTCTTGACACCCC
GTTGGCCCTCCATCCGCCGCTGGATTCCCTGGAGACTGCGCTTGTACTTGGGATGGAGCCTCGGG
AACTTGAGCCGCAACTGGCGGATCGCAAGCTGCCAGTCGCCCTCG
Found at i:20290 original size:9 final size:9
Alignment explanation
Indices: 20276--20333 Score: 86
Period size: 9 Copynumber: 6.8 Consensus size: 9
20266 CCAGAGCAGC
20276 GGAGCTTCT
1 GGAGCTTCT
20285 GGAGC-T-T
1 GGAGCTTCT
20292 -GAGCTTCT
1 GGAGCTTCT
*
20300 AGAGCTTCT
1 GGAGCTTCT
20309 GGAGCTTCT
1 GGAGCTTCT
20318 GGAGCTTCT
1 GGAGCTTCT
20327 GGAGCTT
1 GGAGCTT
20334 GAGCCTCTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
6 4 0.09
7 2 0.04
8 2 0.04
9 37 0.82
ACGTcount: A:0.14, C:0.21, G:0.33, T:0.33
Consensus pattern (9 bp):
GGAGCTTCT
Left flanking sequence: Indices 19776 -- 20275
CATGCTCCTCTGAGCCCTGGATCGACGGAAGGATCGCCAGAAGCAAGCCGAAGATCGCAGCGCTC
TCCCTTTCGCCAGGCTCATACTCAGGCCCATCAGCCACCTTACCCCTCTCCTTCGACCCACCGGC
CAAAAGACTCGGCACAGTGGGCACGTCGCTCTCGTCCACCGGCTGCTTGCCCTCGTCATCCTCTT
CCTCCACCCTCTCTTCCTCCACCCCCTCGAGCACGTGGACCGCCCCAGCCTGAGTCCCGGGCCCG
CCCTGGAAGCTCACTAGCGGCTGGTACTGCACTGGCGCCGGCTCTATCGGGTCTGGCTCGTACTC
CGAGTCGTCCACCTCGAGGATCTCGCCCTCCTGGGTCAATGTAACCACGCCACCTTCGCTACATT
CGTCCGAATAGCACGATTCTCCGTCGCTCAGAGCGCCTTCTAGATCGTATAGCCACCGTAAATCA
GCGTCGCCAAGCAGCGGAGTCTCCGCAGCCTGGTCCCAGAGCAGC
Right flanking sequence: Indices 20334 -- 20833
GAGCCTCTCCCTCGGGCTCTGGGGTGACTATGAGCGATCTCTTGACACCCCGTTGGCCCTCCATC
CGCCGCTGGATTCCCTGGAGACTGCGCTTGTACTTGGGATGGAGCCTCGGGAACTTGAGCCGCAA
CTGGCGGATCGCAAGCTGCCAGTCGCCCTCGTTTACGAGCCTCAGCGAGTCTGTCGGACCATCCA
TGAACTGGGTGATCTTCTTCTGGCCGTTTCCTACAAGACCAAACTTGTGGCGAGCCCTATCGGCT
AGGGTCTGGTGTTTCAGCGGCTGTTTTGGCCGCTTCGGCTTTCGTTTGTTAGAGGGGGCCGGTAC
AACCGCCTCAGTTTTGCCCCGTTTTGGCTTCTTCTTGGCCGGTGCGGCTCGTTTTGGCTTCGTGG
GCGGGTTCTCCGCAGCAGGAGCGTCCCCGTCCTCGCTCCGGAACAGCTGGAGCGTTGAGATGAGC
CGTGTCTCGTGCTCTGCCCGACGTTCCTGGCTCTCCACCTCCTCG
Found at i:21383 original size:12 final size:12
Alignment explanation
Indices: 21366--21390 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21356 GCAAACGTAA
21366 AGGGTACGCAAC
1 AGGGTACGCAAC
21378 AGGGTACGCAAC
1 AGGGTACGCAAC
21390 A
1 A
21391 CCCTTGCAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.32, T:0.08
Consensus pattern (12 bp):
AGGGTACGCAAC
Left flanking sequence: Indices 20866 -- 21365
CATCGAGGACGGCTGGGGCTTCGTGGCACAGGCTCGTCTCGTGGCTTCTCTCGGCGGCTTAAGGT
TGATCCGTTGGGTCACGCGTCTGATCTGATGCGAACAAACGCGTCTCGAAAACAGAGAGGCTGCA
AAATACACGGTCTACGGTGGAATACACAGAGATAGGACAGTATGATGGTGGACGCTTCAGCATAC
AACTTCCATCATTTACGTGAACACCATAGTTGGTTGAAAACCCAAGCATGCACGGAAATTCGCGA
ATGAAGGTTATCCAGTGCCTCGAACAATGATTATGAGTGAGGCTCGAACTACGGTGATCAACACT
GAGCAACCTGACGGAAACTGTTGGCAAGGCCAACCGCTACATTGGCAAGGACATCACTACATTGG
CGAGAACTGCCATCACATTGACGAGGATTGGTGCTACATTGGGGCGGACTACTACACGAGCCTCT
GACCCTACTCTACGTAGATTTGTAAAAACCCTCTAGCAAACGTAA
Right flanking sequence: Indices 21391 -- 21890
CCCTTGCAGGTTGACAAGCACAACGAACCAATCGTCATCTCTGTAAGCCAAGTAACGGGTGGTGA
GCTCGGGTCCTGGACGTGTAGTACTCATAACATCTTTTGGCTCCATAAAACACGAAAACTTGCCA
CCTCTCCTTACCACCTCCTTGGTTTCTTCCTAGGGAACATTACAACGAGGCGTCCAGAAGATTGA
CCCTCGTCAATGCATTGGAAGGAAACTTTCCACGTCAATATTCTGGAGACTCCTCCGGCACGTAG
CTCTGACACCGGGGTCTGTATGCGTTCAAGCGGCCTAGGATGCCGTCGATCCGCTTGTGACTCGT
CAGAATGAGCTCCTTGTGAGACTGTGCGGTAAGGATGCCTGCCTCAGAACAGAAACTCAACAAGT
CAGCGAAAAGCTGTATGGGAGGGGGGTCATGATGACACTCGAGCATGGTCTGGAAGATTTTGCCA
ATGCGCTCCTTGTTGAGGTACCGTACATCAGTACGAAGGTCGTTG
Found at i:24484 original size:66 final size:66
Alignment explanation
Indices: 24372--24496 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
24362 CGTTTTCTTC
* * **
24372 GAGGTGGTACTTGTTTCACTTGTTTTGACCGAAGAGGAGGTGATCGTTTCACTGGATACATCCGT
1 GAGGTGGTACTTGTTTCACTGGATACGACCGAAGAGGAGGTGATCGTTTCACTGGATACATCCGT
24437 T
66 T
* **
24438 GAGGTGGTACTTGTTTCACTGGATACGTCCGTTGAGGAGGAT-ATCGTTTCACTGGATAC
1 GAGGTGGTACTTGTTTCACTGGATACGACCGAAGAGGAGG-TGATCGTTTCACTGGATAC
24497 GTCTGACGAG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 50 0.98
67 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.34
Consensus pattern (66 bp):
GAGGTGGTACTTGTTTCACTGGATACGACCGAAGAGGAGGTGATCGTTTCACTGGATACATCCGT
T
Left flanking sequence: Indices 23872 -- 24371
TCTCGTCTAGAAAGACCGGGACATTTTGGGGCCCGTTCCAAAAATAACGTTGGAGGTTGGTTTCG
CATACCTGATCGCCATGACAGTATCCAATTGGGTGAATCGGACTGGAACCAAGGTTGAAGATTCT
CGGCACCCGTTCGGCCCTCTCTTCGAGCTTTTTGTCGTCGTGGTTTTCATCATGCTGAAGAGGCT
CGCTTCTTTTTTGACTGGAGTTCGACCATCCCGTGCCCCAAGTAAGCGTGGGATTGGAATCTTCC
GCCTCGCCCGTCTGTGTGGTGGCTATGAAGGTGATGGTATGGCCTTCTTCATCGGTAGCAGTTAC
TTGCGAAGTGGTTTTTCCGTCGTCACCGGGACAGTAAGGTGGACAACGATTAGGGACGAAAACAG
GTGGTATCACACCCCCCACAGGTGGCGGAATTGGGACATTTATGTTGGTCCCAGGAAGCTTCATT
GAAGTTTTCGGTTTGTGAGACTCGTCCTCAGTCTTCGTTTTCTTC
Right flanking sequence: Indices 24497 -- 24996
GTCTGACGAGGATTCCGAGCTCAGCTCCTCACAATTTAGGACATGGATAGTGAATTCTTCGACTG
ACAACTTCGAGAGTGGTACACCCTCACTGCTTGTGTCGATAGGGGTACACGACTCAAGCTTGATA
GGTACTTCAACCAGACCCTTGACGACAAAAGCTTTCTGAAATCGAGCTAGTTTGCGCACAGACAC
CTCGCTACCTTCAACAGTAAACAGACTGCAATCAGGCGAAGTCTTGATCAGATCCCCCGAAACTA
CAAGAATCTCGTTCTCAGACCGGACACTCACGGTGGCTCCAGTTTGTTGCACCTTCGGCAGACCA
CCAATTGCTACAGTCTCACCAGCAAAGGAGACAACCCCGTTGTTGGTCACCATTGTGAGAGGGCC
CGAAATGGTTTCCGTAGGAAGAGAAGTTTCTTTGGTGGAAGTAGTTGGTTTTGTAGTTGTGGTAG
AGGTGGGACTAGGTGTTGTAAGCTGCACTGGTTCTGGGTCCTGCA
Found at i:24508 original size:33 final size:32
Alignment explanation
Indices: 24405--24499 Score: 136
Period size: 33 Copynumber: 2.9 Consensus size: 32
24395 TTTGACCGAA
*
24405 GAGGAGGTGATCGTTTCACTGGATACATCCGTT
1 GAGGAGGT-ATCGTTTCACTGGATACGTCCGTT
* *
24438 GAGGTGGTACTTGTTTCACTGGATACGTCCGTT
1 GAGGAGGTA-TCGTTTCACTGGATACGTCCGTT
24471 GAGGAGGATATCGTTTCACTGGATACGTC
1 GAGGAGG-TATCGTTTCACTGGATACGTC
24500 TGACGAGGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
32 1 0.02
33 52 0.95
34 2 0.04
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.32
Consensus pattern (32 bp):
GAGGAGGTATCGTTTCACTGGATACGTCCGTT
Left flanking sequence: Indices 23905 -- 24404
CGTTCCAAAAATAACGTTGGAGGTTGGTTTCGCATACCTGATCGCCATGACAGTATCCAATTGGG
TGAATCGGACTGGAACCAAGGTTGAAGATTCTCGGCACCCGTTCGGCCCTCTCTTCGAGCTTTTT
GTCGTCGTGGTTTTCATCATGCTGAAGAGGCTCGCTTCTTTTTTGACTGGAGTTCGACCATCCCG
TGCCCCAAGTAAGCGTGGGATTGGAATCTTCCGCCTCGCCCGTCTGTGTGGTGGCTATGAAGGTG
ATGGTATGGCCTTCTTCATCGGTAGCAGTTACTTGCGAAGTGGTTTTTCCGTCGTCACCGGGACA
GTAAGGTGGACAACGATTAGGGACGAAAACAGGTGGTATCACACCCCCCACAGGTGGCGGAATTG
GGACATTTATGTTGGTCCCAGGAAGCTTCATTGAAGTTTTCGGTTTGTGAGACTCGTCCTCAGTC
TTCGTTTTCTTCGAGGTGGTACTTGTTTCACTTGTTTTGACCGAA
Right flanking sequence: Indices 24500 -- 24999
TGACGAGGATTCCGAGCTCAGCTCCTCACAATTTAGGACATGGATAGTGAATTCTTCGACTGACA
ACTTCGAGAGTGGTACACCCTCACTGCTTGTGTCGATAGGGGTACACGACTCAAGCTTGATAGGT
ACTTCAACCAGACCCTTGACGACAAAAGCTTTCTGAAATCGAGCTAGTTTGCGCACAGACACCTC
GCTACCTTCAACAGTAAACAGACTGCAATCAGGCGAAGTCTTGATCAGATCCCCCGAAACTACAA
GAATCTCGTTCTCAGACCGGACACTCACGGTGGCTCCAGTTTGTTGCACCTTCGGCAGACCACCA
ATTGCTACAGTCTCACCAGCAAAGGAGACAACCCCGTTGTTGGTCACCATTGTGAGAGGGCCCGA
AATGGTTTCCGTAGGAAGAGAAGTTTCTTTGGTGGAAGTAGTTGGTTTTGTAGTTGTGGTAGAGG
TGGGACTAGGTGTTGTAAGCTGCACTGGTTCTGGGTCCTGCATTT
Found at i:29292 original size:12 final size:12
Alignment explanation
Indices: 29247--29286 Score: 80
Period size: 12 Copynumber: 3.3 Consensus size: 12
29237 CGGAGACGAC
29247 GAGGAACCAGCT
1 GAGGAACCAGCT
29259 GAGGAACCAGCT
1 GAGGAACCAGCT
29271 GAGGAACCAGCT
1 GAGGAACCAGCT
29283 GAGG
1 GAGG
29287 GCCCAGGGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.33, C:0.23, G:0.38, T:0.07
Consensus pattern (12 bp):
GAGGAACCAGCT
Left flanking sequence: Indices 28747 -- 29246
AGTTGGTACCGACATCCTCCGTCTCCCCAAGTGTTCCCATCGAGGAAACCACCATCACCATTACC
AGGACTGAAACAAATGGAGGAGGCATCGTCGAAACAAACTCTGGTGTTGTCATCGTCACTACTGA
TAACGAGGAATGGGTAACAACAACTCTAGAAATGCCTGGAAAGTCAGTGACAAGTTATGAAGAAG
GCGATTTCGAAGGTGAGACTGAACACGAAGCGGGCCAGACAGTGGTCACCGTTACGAAAACTACA
ACGGATAAAGATGGCTTAGTTACCACGGTCACCGAAGAGATTGAAGCCACCACGGACGAAGGCGG
GCAAGCTGTCACCACCACCCGCGAATACCACCCTAAGAGCGTGTATACCACCACCTTTACCACGA
CTGGCTCTAAAGGGCAGCCAATTACCGAGGTTGGCGTGGTAGAGGTCACGAGAGGTCCCGATGGC
CAACAGACCACCGGCATCCAGCTGTTGAGGCCAGTCGGAGACGAC
Right flanking sequence: Indices 29287 -- 29786
GCCCAGGGGACGTCACCACGAACGAAGAAGGGGCCATAGTCGCAACTAAACCTGGAGCAGTCCAT
GAGATCACTACGACTGACGAGAACGGCCAGGTTGTCACCAAACAAACCACGGTGACAGATGCGGG
CCTTGTCACCACCACTGATAGTAACGGGTCTGTGGTCACTACTCAGCGTCCTACGGCCTCTTTAG
CCGGGCAACCGGGCCCAGATGGCACCCAACAGGGAGCTCCAGTGGCTCCTTCAGTGGTATTCGGA
GACGGGGCCAACATCAGCTGCTATAGCGGCGGTCTTTGGATGCTTGGACTTTTCGCCATGCTTTT
AGTTTAAATATTGATTAAGCTTCTGGATTTCACACTTTTTTGGTAGGATACAGGGAACCTGATGG
CAGAAATGTTTAGGCAGTGTTCCTATGTGCAAATTGGAGTTAATTCCTGGTACCGACCACATCAA
CTAGTCAGGTACGCCTTCAATATCTCACAGATCTTCAGTGCACTC
Found at i:33983 original size:16 final size:16
Alignment explanation
Indices: 33964--34014 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
33954 TCCCACTTCA
33964 CACCTCCCACACTACT
1 CACCTCCCACACTACT
* * *
33980 CACCCCCCACACTTCC
1 CACCTCCCACACTACT
* *
33996 CACTTCCTACACTACT
1 CACCTCCCACACTACT
34012 CAC
1 CAC
34015 ACCTTCCACT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.24, C:0.57, G:0.00, T:0.20
Consensus pattern (16 bp):
CACCTCCCACACTACT
Left flanking sequence: Indices 33464 -- 33963
AGCCATCAACTACGAAGTAGTTTAGGAATGTAAACCTTGGTAGGAGGCACCAACTACATTCCTGG
ATATTCCTACACTGGATAAAAGAGAATTTCCCGACTTTGGGACTCCCATCTATTTCTATAATTGC
ATATCCTACCTTCGATCTGAGTAAGAAATCCACCATGGTAATGATGGACAAGACAATCACCAACG
GCGATTTTACCCTTTGGCTACTGACATTAATTTGGGTCGCAACACCTTCTATTCTCATTACATTG
ATGTGGTTTTAGTTAGAGTTTCGAGCCTACTACACTTGAAACTGAAGCTAATGAATAATACCTAT
TCTAGGGCAATACCGCTCAATGTACTCGGTACCACTTTGTGTCACCATGGTGATCCTCCCATCCT
GCTATCCTCCATTGCATAGTCAAAAAAGCCCACACCGCTATTTTCATAAACTGCCATTTCTACTT
CCACTTCTGTTCCTATTACTCTCCTCGCAAACACCTCCCACTTCA
Right flanking sequence: Indices 34015 -- 34215
ACCTTCCACTCCTTCCCCTCCCATACCTTCCCCTCCTACGCCCTCACTCCACTTCTTCCCCTCCT
CATCACGCCCACAACCCCCCATCCCCACCCCCCACCCCACCTCGCCACACTCTACCGAGCCCCAC
CACCACCGCCACCAAAACCCACCCCTCCTCCCCGCCCCTTAGGCGTTGGGGGGGTCTGGGGGGGC
GCCGCC
Done.