sallet_2.scaffold.fasta.s56.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold77
Parameters: 2 7 7 80 10 50 500
Length:  72098

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8975--9003	12	2.4	12	100	0	58	58	0	31	10	1.31
14283--14325	13	3.2	13	90	9	61	37	6	55	0	1.27
14281--14339	15	4.0	15	84	10	68	38	6	52	1	1.38
14661--14691	15	2.1	15	100	0	62	38	32	22	6	1.80
16268--16308	12	3.4	12	93	6	66	36	0	63	0	0.95
16319--16373	13	4.1	13	79	9	56	40	5	54	0	1.23
16332--16360	13	2.2	13	100	0	58	37	6	55	0	1.27
16845--16889	20	2.2	21	88	11	67	8	57	20	13	1.62
23646--23703	13	4.8	13	75	16	70	36	31	15	17	1.91
23639--23692	22	2.5	22	87	0	81	33	33	16	16	1.92
24263--24305	15	2.9	15	89	0	68	6	44	13	34	1.72
24263--24311	15	3.3	15	83	16	66	8	46	14	30	1.73
24807--24843	17	2.1	18	90	5	58	29	0	62	8	1.24
24981--25020	19	2.2	19	86	4	55	17	5	50	27	1.67
26943--27050	21	5.1	21	95	0	171	41	4	36	17	1.70
27046--27110	20	3.3	20	80	2	69	20	7	38	33	1.81
32182--32227	13	3.5	13	84	0	56	41	19	10	28	1.85
32887--32946	18	3.7	16	77	18	61	30	23	16	30	1.96
32877--32930	18	3.2	18	80	17	62	27	22	16	33	1.95
35970--36022	16	3.4	16	73	2	54	18	18	28	33	1.95
36432--36466	18	1.9	18	100	0	70	8	40	28	22	1.84
36865--36943	21	3.8	21	93	0	131	25	26	34	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37427--37480	24	2.2	24	86	0	72	20	27	48	3	1.66
37428--37489	24	2.6	24	84	0	70	19	25	46	8	1.77
37494--37544	12	4.2	12	84	0	66	21	27	43	7	1.80
37566--37630	12	5.4	12	75	14	71	24	21	40	13	1.90
37542--37631	36	2.5	36	83	7	128	27	22	37	12	1.90
37542--37630	24	3.7	24	75	14	85	26	22	38	12	1.90
37854--37892	18	2.2	18	95	0	69	5	28	46	20	1.72
38497--38541	12	3.8	12	90	0	72	2	42	28	26	1.67
41206--41234	5	6.0	5	92	8	51	41	0	58	0	0.98
41200--41232	14	2.5	13	95	5	57	39	0	60	0	0.97
41291--41337	7	6.9	7	90	4	69	8	0	59	31	1.27
41335--41364	13	2.3	13	100	0	60	6	0	40	53	1.27
41481--41541	10	6.2	10	80	1	70	37	0	57	4	1.20
42142--42329	41	4.7	40	78	4	182	32	21	16	29	1.95
42145--42329	79	2.3	81	83	3	230	32	22	15	29	1.95
43039--43112	21	3.4	21	71	10	67	6	40	35	17	1.76
43053--43079	12	2.2	12	100	0	54	7	37	33	22	1.82
43834--43899	22	3.0	21	82	10	69	21	39	18	21	1.93
44325--44422	17	5.9	17	83	5	85	19	29	22	28	1.98
44335--44432	17	5.9	17	81	4	110	18	30	19	31	1.96
44335--44449	33	3.4	33	84	4	124	18	30	19	32	1.95
44359--44416	6	10.5	6	71	17	54	17	31	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44336--44449	50	2.3	50	83	3	131	18	30	19	31	1.96
44580--44620	16	2.5	17	84	4	57	12	31	14	41	1.83
45032--45066	14	2.5	15	86	13	56	14	28	8	48	1.73
45113--45137	13	1.9	13	100	0	50	32	40	8	20	1.81
45120--45171	18	2.9	18	77	2	61	26	40	11	21	1.87
45179--45216	17	2.2	17	95	0	67	21	42	13	23	1.88
45318--45395	36	2.2	36	95	0	138	7	38	23	30	1.83
45373--45405	12	2.8	12	95	0	57	9	39	27	24	1.85
46562--46618	12	4.8	12	100	0	114	17	26	40	15	1.90
46625--46662	12	2.7	15	76	23	55	18	36	31	13	1.89
46964--46996	10	3.2	10	95	4	57	30	9	57	3	1.45
46993--47046	11	5.1	11	88	4	76	44	7	37	11	1.68
47200--47307	35	3.1	33	74	13	94	33	7	49	10	1.65
47218--47316	34	2.9	34	76	5	94	36	8	48	7	1.60
47511--47541	13	2.4	13	94	0	53	22	12	29	35	1.91
47583--47638	28	2.0	28	96	0	103	30	17	30	21	1.96
48443--48688	8	31.1	8	78	8	110	21	13	28	37	1.90
48540--48688	40	3.7	39	82	7	158	18	14	30	37	1.90
48625--48709	8	10.6	8	92	0	143	14	14	36	35	1.86
49818--49849	14	2.3	14	100	0	64	21	12	37	28	1.90
49863--49941	27	2.9	27	88	3	104	17	5	53	24	1.64
49867--49941	14	5.4	14	87	6	100	18	5	53	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52370--52406	12	3.0	12	96	4	65	51	16	16	16	1.77
52364--52515	16	9.9	16	87	10	205	43	14	23	18	1.87
52365--52579	16	13.9	16	85	10	166	38	16	22	22	1.93
52363--52563	48	4.3	48	83	10	199	39	16	22	21	1.92
55020--55050	14	2.2	14	94	0	53	29	6	58	6	1.48
55593--55623	11	2.7	12	90	10	55	16	51	6	25	1.68
56404--56443	15	2.7	15	92	0	62	37	2	45	15	1.59
56600--56644	12	3.8	12	90	0	63	28	26	28	15	1.96
56692--56716	12	2.1	12	100	0	50	8	36	24	32	1.84
58459--58510	19	2.6	21	84	9	72	9	5	32	51	1.58
58479--58514	10	3.5	10	85	7	54	8	5	30	55	1.52
59612--59638	10	2.7	10	100	0	54	18	55	7	18	1.65
67933--68015	18	4.6	19	70	16	61	27	40	30	1	1.64
67951--67975	9	2.8	9	100	0	50	24	36	40	0	1.55
67970--68019	6	8.3	6	78	8	57	30	48	20	2	1.61
68388--68430	18	2.4	18	100	0	86	25	46	27	0	1.53
68420--68541	24	5.0	24	84	5	91	31	56	6	4	1.46
68388--68436	18	2.7	18	93	0	71	24	46	26	2	1.63
68462--68541	3	26.7	3	76	0	79	36	58	2	2	1.25
68438--68541	12	8.4	12	78	6	109	33	57	4	3	1.38
69035--69068	15	2.3	15	94	0	59	20	11	50	17	1.77
69110--69136	12	2.2	12	100	0	54	25	44	14	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70356--70404	21	2.3	21	85	0	62	10	24	32	32	1.89
70407--70434	9	3.1	9	100	0	56	0	21	42	35	1.53
70579--70621	21	2.0	21	82	8	52	6	41	44	6	1.58

Tables:   1

The End!