Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold77
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 72098
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Found at i:8992 original size:12 final size:12
Alignment explanation
Indices: 8975--9003 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
8965 TTTTGACTCC
8975 ATGAAGGAGAAA
1 ATGAAGGAGAAA
8987 ATGAAGGAGAAA
1 ATGAAGGAGAAA
8999 ATGAA
1 ATGAA
9004 TAGAAAGCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.31, T:0.10
Consensus pattern (12 bp):
ATGAAGGAGAAA
Left flanking sequence: Indices 8475 -- 8974
ATCACCACTGATGTAAAGAATAAAACCACGTGAATATTTGGGGACTACATATCCTTTGAATAATC
ACCTTAGGCTGTAAAAGTTGTCACTTTATGAGTGAAAAACACCAAAGTTTTGTCCGCTTTGAGCC
GTATCGTTGAAAAATATTTTTTTTTATCAAGCGCAAGTGGTTTAGTGGTAAAATCCAACGTTGCC
ATCGTTGGGCCCCTGGTTCGATTCCGGGCTTGCGCATTTTTTTTATAATTTTTTTGATATGTGAA
TGTAACGTTACATTTTTCTGAGGCTCATCTCTGAAAATTGTTAGATGCCCTAGTTGAGTGATTAA
AAAAAGGTGGGACGGAGTCCCGGGATGCAAAAAGGATGACACCGACGTGATTCGAACACGCGCAT
CTTACGATAACAGAAAACCCGTCCTGATGGAGAGGAAGCTTTCGCTTGAGTCTGCCGCCTTAGAC
CGCTCGGCCACAGTGCCATTTGTTGAGAGCGGAGATTTTGACTCC
Right flanking sequence: Indices 9004 -- 9503
TAGAAAGCGTGGGTTACGTCAGATAATGGGCGGGCTTTGGGAGAGTTTGGAGCTCTTGGAGGATG
TCGCTCATTCGAGTGAATGAATGTTTTATTGACATTTATGTTAGTAAAAGTCTGTGTGATCAGAG
AATTCGTGGGTTTTCATAGCCTGTAAAGTCATGCTTCTGTTCACAAGTTTAGCGTCAGTCTAGTT
TCTGAATCAGCCACCTTACGTTTGTTGAAACATCTTGGCTGGTCATCCCATATGAGCATAATACT
CCAGTAATAGCACCTACCAATTCACTGTCCTGTATTGCCACTATTGTTCTTCATTAGCCCTGGAA
CTTAGTCCCCTTCTTGGATTCGAACTGGTCACCATTTCCATTTTTCACGTTTTCTTCAAAATAAT
TACAATCAATGAATTACTCTCCATAAACTAAACCCCACGTCTTAAAAAAGCCACAAACTGAACGC
AAATAAGACGAGGATGCAACCACGAGACAGAACTGCGCATTAAAG
Found at i:14305 original size:13 final size:13
Alignment explanation
Indices: 14283--14325 Score: 61
Period size: 13 Copynumber: 3.2 Consensus size: 13
14273 TTAGACGAAA
14283 GAAG-GAGGCAGG
1 GAAGAGAGGCAGG
14295 GAAGAGAGGCAGG
1 GAAGAGAGGCAGG
14308 GAAGAGGGAGGCAGG
1 GAAGA--GAGGCAGG
14323 GAA
1 GAA
14326 AAGTGGAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.14
13 13 0.46
15 11 0.39
ACGTcount: A:0.37, C:0.07, G:0.56, T:0.00
Consensus pattern (13 bp):
GAAGAGAGGCAGG
Left flanking sequence: Indices 13783 -- 14282
TTTTTGTTTGTTCAAGGTGCCCCAGGTTTCGTAGGCCAAGTCGTACTCCGGGAGATACCCGCCAT
TGTCCAAGTAGATCGGTTTGTCGGAGTGGAACGTGGCAAAACCCGTCACCACCTTCAGGTACAGC
GGCTCGGGACCAGCCTCGAGCGAGTTGGGCGGAGTGAAGCACAGGGAGCCCCGGCTCGAGTTGAG
TTGCTCGGTCTTTTGCTCGAGCTTATCGAGGCACGGGAACAACATCTGGGGGTTCGAGCCGATTT
TGGCCCGTGGTTGCGATGCGGGCTTCCACCGGCGAGCAGAGAGCGATAGCTGGCGCACCCGGTTC
ATTGAGAGTGTAATTGGCAATGATTTGGGGGTGTGGGGCTTGACCGCTATTTCCGTTGACCTCAT
CGCACGTGACCCAGAGAACGTGATTGTGCATGACAGGGGTTTGATCGCGACGGCAAAGGTTACGA
GCGACGTGCTGACGTACGCGAATACAGGGGTAAGATTAGACGAAA
Right flanking sequence: Indices 14326 -- 14825
AAGTGGAAGCAGGGGTGGAAGAGAAGGGAAAAAAAGAGCGATCAGTCAACAAACGACTCAGTGGT
GGTTGCAAAAGTTGTTTTGTCAACACAACTATAAGCGGGCCGAAATAGTAGGAGATAGTAAGAGC
ATACCAGCCCTGGTCACCACAAATACCGCAGACCAGCACGTAGCATGGCATCTGGTCTGCGCCGA
GCAAGCACGGTTGCGTAGCAGCACGCATCGTATACCCGCGAGACCCGGTGGCGAGGGTTTAACGT
AGGATGGATCGACGATCAGCCAGAGTCATCAGCCCGAGCCAAACCAGAGCCATTCAAAAGCAACC
AAACAACACCGACAAACCCGATCGAGACAAACCCGATCGAGGGTGACCACGGACTGCTGTCCTGT
CTTATAGTTACGCCGGGGATAAGCACTAGGTCACGCGTCCCACCTGCGGTTTGACGAGTAACGGG
GTTTGACCAGAGAAAATACATGATGGGCGAATCAGATGAGATCCT
Found at i:14318 original size:15 final size:15
Alignment explanation
Indices: 14281--14339 Score: 68
Period size: 15 Copynumber: 4.0 Consensus size: 15
14271 GATTAGACGA
*
14281 AAGAAGGAGGCAGGG
1 AAGAGGGAGGCAGGG
14296 AAGA--GAGGCAGGG
1 AAGAGGGAGGCAGGG
14309 AAGAGGGAGGCAGGG
1 AAGAGGGAGGCAGGG
* *
14324 AAAAGTGGAAGCAGGG
1 AAGAG-GGAGGCAGGG
14340 GTGGAAGAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
13 13 0.33
15 17 0.44
16 9 0.23
ACGTcount: A:0.39, C:0.07, G:0.53, T:0.02
Consensus pattern (15 bp):
AAGAGGGAGGCAGGG
Left flanking sequence: Indices 13781 -- 14280
AGTTTTTGTTTGTTCAAGGTGCCCCAGGTTTCGTAGGCCAAGTCGTACTCCGGGAGATACCCGCC
ATTGTCCAAGTAGATCGGTTTGTCGGAGTGGAACGTGGCAAAACCCGTCACCACCTTCAGGTACA
GCGGCTCGGGACCAGCCTCGAGCGAGTTGGGCGGAGTGAAGCACAGGGAGCCCCGGCTCGAGTTG
AGTTGCTCGGTCTTTTGCTCGAGCTTATCGAGGCACGGGAACAACATCTGGGGGTTCGAGCCGAT
TTTGGCCCGTGGTTGCGATGCGGGCTTCCACCGGCGAGCAGAGAGCGATAGCTGGCGCACCCGGT
TCATTGAGAGTGTAATTGGCAATGATTTGGGGGTGTGGGGCTTGACCGCTATTTCCGTTGACCTC
ATCGCACGTGACCCAGAGAACGTGATTGTGCATGACAGGGGTTTGATCGCGACGGCAAAGGTTAC
GAGCGACGTGCTGACGTACGCGAATACAGGGGTAAGATTAGACGA
Right flanking sequence: Indices 14340 -- 14839
GTGGAAGAGAAGGGAAAAAAAGAGCGATCAGTCAACAAACGACTCAGTGGTGGTTGCAAAAGTTG
TTTTGTCAACACAACTATAAGCGGGCCGAAATAGTAGGAGATAGTAAGAGCATACCAGCCCTGGT
CACCACAAATACCGCAGACCAGCACGTAGCATGGCATCTGGTCTGCGCCGAGCAAGCACGGTTGC
GTAGCAGCACGCATCGTATACCCGCGAGACCCGGTGGCGAGGGTTTAACGTAGGATGGATCGACG
ATCAGCCAGAGTCATCAGCCCGAGCCAAACCAGAGCCATTCAAAAGCAACCAAACAACACCGACA
AACCCGATCGAGACAAACCCGATCGAGGGTGACCACGGACTGCTGTCCTGTCTTATAGTTACGCC
GGGGATAAGCACTAGGTCACGCGTCCCACCTGCGGTTTGACGAGTAACGGGGTTTGACCAGAGAA
AATACATGATGGGCGAATCAGATGAGATCCTGCGAGATCGAGATC
Found at i:14681 original size:15 final size:15
Alignment explanation
Indices: 14661--14691 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14651 AAACAACACC
14661 GACAAACCCGATCGA
1 GACAAACCCGATCGA
14676 GACAAACCCGATCGA
1 GACAAACCCGATCGA
14691 G
1 G
14692 GGTGACCACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.32, G:0.23, T:0.06
Consensus pattern (15 bp):
GACAAACCCGATCGA
Left flanking sequence: Indices 14161 -- 14660
CGTTGACCTCATCGCACGTGACCCAGAGAACGTGATTGTGCATGACAGGGGTTTGATCGCGACGG
CAAAGGTTACGAGCGACGTGCTGACGTACGCGAATACAGGGGTAAGATTAGACGAAAGAAGGAGG
CAGGGAAGAGAGGCAGGGAAGAGGGAGGCAGGGAAAAGTGGAAGCAGGGGTGGAAGAGAAGGGAA
AAAAAGAGCGATCAGTCAACAAACGACTCAGTGGTGGTTGCAAAAGTTGTTTTGTCAACACAACT
ATAAGCGGGCCGAAATAGTAGGAGATAGTAAGAGCATACCAGCCCTGGTCACCACAAATACCGCA
GACCAGCACGTAGCATGGCATCTGGTCTGCGCCGAGCAAGCACGGTTGCGTAGCAGCACGCATCG
TATACCCGCGAGACCCGGTGGCGAGGGTTTAACGTAGGATGGATCGACGATCAGCCAGAGTCATC
AGCCCGAGCCAAACCAGAGCCATTCAAAAGCAACCAAACAACACC
Right flanking sequence: Indices 14692 -- 15191
GGTGACCACGGACTGCTGTCCTGTCTTATAGTTACGCCGGGGATAAGCACTAGGTCACGCGTCCC
ACCTGCGGTTTGACGAGTAACGGGGTTTGACCAGAGAAAATACATGATGGGCGAATCAGATGAGA
TCCTGCGAGATCGAGATCCAGCGGGGCACTGCGCGGGGTGAAGACGTGGTAAAACGTGGTGGGGG
GTGAAGAATGGTGTCAGAATTGATGTCGTGGGTTTGAGGAGTAGACTCAAGAGTTAATATGGGTT
GAAGGTTGTAGTGCGTAATTTAACAACGGGAAAACGCTAGCGAGGATCAAAGAGTTTGAGTGCGT
AACGGTATAGAGACTCGTTGCGAATGAGCTGATTATGCATTCAAGCCAGTGATCCCTCGGCGTAA
CGGTCGTTGAATGCTACCGGTAGCATCAGCTGGCAATATGGCTACCAATTGAGTGTTGGTGGTCT
AGGGCACTGAGCGTGGCCACCCAGGCGTCAAGTGAGAATAGCCTA
Found at i:16285 original size:12 final size:12
Alignment explanation
Indices: 16268--16308 Score: 66
Period size: 12 Copynumber: 3.4 Consensus size: 12
16258 CGAGATAGGA
16268 GAAGA-GGGAGGG
1 GAAGAGGGGA-GG
16280 GAAGAGGGGAGG
1 GAAGAGGGGAGG
16292 GAAGAGGGGAGG
1 GAAGAGGGGAGG
16304 GAAGA
1 GAAGA
16309 AAGAGAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 24 0.86
13 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (12 bp):
GAAGAGGGGAGG
Left flanking sequence: Indices 15768 -- 16267
GCGGTGCTTGCACCGGTGCGCACCGACCCTCGGTTGTGGGCGGGGTTTGCGGCCAACGGGGCGGC
GGCGTTCCTCCTCCACTGGTGGTGCTTTGGCCCTCCCCTCACCGACCGCATCAACGCGGCCACTG
GGGGCTACTGCGACGGGGACCTCGCAGTGAAGGGGACCTACGAGTGCTACGCGCTAGGCCACACG
TGGATTGACGGGTTTGACACCTCGAGTCATTGTTACTTGTTGGCGCAGTTCATTGTGTTGACGGG
GTGTCTGTTGGTGCGCGCGCACCTCCCCCGCGCCGGCGACGAGGAGAGCCAGGCCAACTCCACCC
AGGTGAAGCCCCGCGGGGTCGATGCGGGGCGGGTGCTTGGGTGGGTGTTGTTGGGGTGTTTTGGG
GTGGAGTTCTTGATCACGGCGTTGTTCTACCACACGTTGGCGGAGCGGGTGGTTGGGTACGCCCT
TGGGGTGGCCATTGTGCAAGTGGTGGTGTTGAACACGAGATAGGA
Right flanking sequence: Indices 16309 -- 16808
AAGAGAAAGAGAGGAGAAGCGAGGAGGGGAAGAGACGAGGGGAAGAGACGAGAGGGGAAAAGAGG
GGAGAGAGGTGTTTGGATGTGACAATGACGAAAGCGATGAAAGACACGAACAAGAGAAGAGACGA
AGAAGGGGAGACAATGGTGGAAAGAATACGAAAGAGACAGTATTTTCAATCTCGCCTACATCCAC
GACTCCTCACCTGATCCTACGGATTCTCGACTGGTGCTGACTATTGCGCCCTTTTCGCCCTCCAC
TTGCGCCACTTCCGCTGCTCAAGCTTACTAATCCTCTCCGCCTTGGCCCATTTGCCACGTCCACC
CCCACCACAGCACTAATCCCGCTTTCGGGGTTGATTCCGTTCTCGGACAGCGATAGTTTCTGCCA
CCCGGGCTCACAACAGCCATCCTTATTTGTCACACCAGAGCTCGTAACGCCACTCACACGATCCA
TAACAATCAACACGAACCCCCCACCAAAACAATCGCCACGCAAAC
Found at i:16340 original size:13 final size:13
Alignment explanation
Indices: 16319--16373 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
16309 AAGAGAAAGA
* *
16319 GAGGAGAAGCGAG
1 GAGGGGAAGAGAG
*
16332 GAGGGGAAGAGAC
1 GAGGGGAAGAGAG
16345 GAGGGGAAGAGACG
1 GAGGGGAAGAGA-G
*
16359 AGAGGGGAAAAGAG
1 -GAGGGGAAGAGAG
16373 G
1 G
16374 GGAGAGAGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 23 0.66
14 1 0.03
15 11 0.31
ACGTcount: A:0.40, C:0.05, G:0.55, T:0.00
Consensus pattern (13 bp):
GAGGGGAAGAGAG
Left flanking sequence: Indices 15819 -- 16318
GCCAACGGGGCGGCGGCGTTCCTCCTCCACTGGTGGTGCTTTGGCCCTCCCCTCACCGACCGCAT
CAACGCGGCCACTGGGGGCTACTGCGACGGGGACCTCGCAGTGAAGGGGACCTACGAGTGCTACG
CGCTAGGCCACACGTGGATTGACGGGTTTGACACCTCGAGTCATTGTTACTTGTTGGCGCAGTTC
ATTGTGTTGACGGGGTGTCTGTTGGTGCGCGCGCACCTCCCCCGCGCCGGCGACGAGGAGAGCCA
GGCCAACTCCACCCAGGTGAAGCCCCGCGGGGTCGATGCGGGGCGGGTGCTTGGGTGGGTGTTGT
TGGGGTGTTTTGGGGTGGAGTTCTTGATCACGGCGTTGTTCTACCACACGTTGGCGGAGCGGGTG
GTTGGGTACGCCCTTGGGGTGGCCATTGTGCAAGTGGTGGTGTTGAACACGAGATAGGAGAAGAG
GGAGGGGAAGAGGGGAGGGAAGAGGGGAGGGAAGAAAGAGAAAGA
Right flanking sequence: Indices 16374 -- 16873
GGAGAGAGGTGTTTGGATGTGACAATGACGAAAGCGATGAAAGACACGAACAAGAGAAGAGACGA
AGAAGGGGAGACAATGGTGGAAAGAATACGAAAGAGACAGTATTTTCAATCTCGCCTACATCCAC
GACTCCTCACCTGATCCTACGGATTCTCGACTGGTGCTGACTATTGCGCCCTTTTCGCCCTCCAC
TTGCGCCACTTCCGCTGCTCAAGCTTACTAATCCTCTCCGCCTTGGCCCATTTGCCACGTCCACC
CCCACCACAGCACTAATCCCGCTTTCGGGGTTGATTCCGTTCTCGGACAGCGATAGTTTCTGCCA
CCCGGGCTCACAACAGCCATCCTTATTTGTCACACCAGAGCTCGTAACGCCACTCACACGATCCA
TAACAATCAACACGAACCCCCCACCAAAACAATCGCCACGCAAACAATTGCTCACATACACACTC
TACACCGCACAATACACGCTTCCACGTCGCCCCACCCGCTTCCAC
Found at i:16367 original size:15 final size:13
Alignment explanation
Indices: 16332--16360 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
16322 GAGAAGCGAG
16332 GAGGGGAAGAGAC
1 GAGGGGAAGAGAC
16345 GAGGGGAAGAGAC
1 GAGGGGAAGAGAC
16358 GAG
1 GAG
16361 AGGGGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.55, T:0.00
Consensus pattern (13 bp):
GAGGGGAAGAGAC
Left flanking sequence: Indices 15832 -- 16331
CGGCGTTCCTCCTCCACTGGTGGTGCTTTGGCCCTCCCCTCACCGACCGCATCAACGCGGCCACT
GGGGGCTACTGCGACGGGGACCTCGCAGTGAAGGGGACCTACGAGTGCTACGCGCTAGGCCACAC
GTGGATTGACGGGTTTGACACCTCGAGTCATTGTTACTTGTTGGCGCAGTTCATTGTGTTGACGG
GGTGTCTGTTGGTGCGCGCGCACCTCCCCCGCGCCGGCGACGAGGAGAGCCAGGCCAACTCCACC
CAGGTGAAGCCCCGCGGGGTCGATGCGGGGCGGGTGCTTGGGTGGGTGTTGTTGGGGTGTTTTGG
GGTGGAGTTCTTGATCACGGCGTTGTTCTACCACACGTTGGCGGAGCGGGTGGTTGGGTACGCCC
TTGGGGTGGCCATTGTGCAAGTGGTGGTGTTGAACACGAGATAGGAGAAGAGGGAGGGGAAGAGG
GGAGGGAAGAGGGGAGGGAAGAAAGAGAAAGAGAGGAGAAGCGAG
Right flanking sequence: Indices 16361 -- 16860
AGGGGAAAAGAGGGGAGAGAGGTGTTTGGATGTGACAATGACGAAAGCGATGAAAGACACGAACA
AGAGAAGAGACGAAGAAGGGGAGACAATGGTGGAAAGAATACGAAAGAGACAGTATTTTCAATCT
CGCCTACATCCACGACTCCTCACCTGATCCTACGGATTCTCGACTGGTGCTGACTATTGCGCCCT
TTTCGCCCTCCACTTGCGCCACTTCCGCTGCTCAAGCTTACTAATCCTCTCCGCCTTGGCCCATT
TGCCACGTCCACCCCCACCACAGCACTAATCCCGCTTTCGGGGTTGATTCCGTTCTCGGACAGCG
ATAGTTTCTGCCACCCGGGCTCACAACAGCCATCCTTATTTGTCACACCAGAGCTCGTAACGCCA
CTCACACGATCCATAACAATCAACACGAACCCCCCACCAAAACAATCGCCACGCAAACAATTGCT
CACATACACACTCTACACCGCACAATACACGCTTCCACGTCGCCC
Found at i:16870 original size:20 final size:21
Alignment explanation
Indices: 16845--16889 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
16835 GCACAATACA
16845 CGCTTCCACGTCGCC-CCACC-
1 CGCTTCCACG-CGCCGCCACCG
16865 CGCTTCCACGCGCCGCCACCG
1 CGCTTCCACGCGCCGCCACCG
16886 CGCT
1 CGCT
16890 GACAATCGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.17
20 15 0.65
21 4 0.17
ACGTcount: A:0.09, C:0.58, G:0.20, T:0.13
Consensus pattern (21 bp):
CGCTTCCACGCGCCGCCACCG
Left flanking sequence: Indices 16345 -- 16844
GAGGGGAAGAGACGAGAGGGGAAAAGAGGGGAGAGAGGTGTTTGGATGTGACAATGACGAAAGCG
ATGAAAGACACGAACAAGAGAAGAGACGAAGAAGGGGAGACAATGGTGGAAAGAATACGAAAGAG
ACAGTATTTTCAATCTCGCCTACATCCACGACTCCTCACCTGATCCTACGGATTCTCGACTGGTG
CTGACTATTGCGCCCTTTTCGCCCTCCACTTGCGCCACTTCCGCTGCTCAAGCTTACTAATCCTC
TCCGCCTTGGCCCATTTGCCACGTCCACCCCCACCACAGCACTAATCCCGCTTTCGGGGTTGATT
CCGTTCTCGGACAGCGATAGTTTCTGCCACCCGGGCTCACAACAGCCATCCTTATTTGTCACACC
AGAGCTCGTAACGCCACTCACACGATCCATAACAATCAACACGAACCCCCCACCAAAACAATCGC
CACGCAAACAATTGCTCACATACACACTCTACACCGCACAATACA
Right flanking sequence: Indices 16890 -- 17389
GACAATCGTCGCCAAGGCCCGCACGGCGTGACACCTGCCGCTCGCACAAATAGCGCACCCAACCT
GGCGCATAATGTGCGCATACACCATAAATAGCACGATGAGCACCGTAGCACCACAGCCAGTGTAG
CGTGAACCTAGCGCAACAGAACGAGTTCAGACAACACAGACTACCGACTACACAGTCTACTCAGT
CTACAATCCAAACAATCAACACAGTCTAATCCAGTACTACCCAGTACTACCCAGACTCCACAGTT
CCACAGTCAGACACACACCATGGACCATCTACAAGTGCAGCTCGACAACATCCACTGCGACCAGT
GCGAAACCAAAGTGCGCACGGTGGTGCACCGGGTGCTCGGCCCCGAGTGCGACATCACCATCACC
AACAACAAACAGGTGGACATCGCCGGCGACGTCGCCGCGTCGGTGAAACCCCTCATAAAACGCCT
TGCCAAGGCCGGGTTCGTGGTGCTCTCGTGGGAGTTGTTCTCCGA
Found at i:23664 original size:13 final size:13
Alignment explanation
Indices: 23646--23703 Score: 70
Period size: 13 Copynumber: 4.8 Consensus size: 13
23636 TCGCCTAGGC
23646 AACCTAGGCAACT
1 AACCTAGGCAACT
23659 AACCTAGG----T
1 AACCTAGGCAACT
*
23668 AACCTATGCAACT
1 AACCTAGGCAACT
*
23681 CACCTAGGCAACT
1 AACCTAGGCAACT
23694 AACCTAGGCA
1 AACCTAGGCA
23704 CTACCCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 8 0.22
13 29 0.78
ACGTcount: A:0.36, C:0.31, G:0.16, T:0.17
Consensus pattern (13 bp):
AACCTAGGCAACT
Left flanking sequence: Indices 23146 -- 23645
CTAATACCGTCTTCTTACATTACATGTACCTAAGCAGACTTACCGTACCATAAGACGATTCAATG
CCAGACTAATTGCTTTCGGGTTGCAAGTGAAAATGCCTACCTAAAAATACCTCTCCAGCCCGTAA
TTGAACCACGAGTTTTTTCACCGTTGAGCTCTAACATTTTCCCCCACAAGTTATGGAGGCACTCA
GGATTCAAGCACACAGTCCCACCACTACCCTCAGAACAATGCCCCCTTCCACCCCAATTGCAAAA
CCAAAACCGTTAGTTCTACTTCTTCTCCAACATAGCAACCCCTGGATCACTATCTCGTAAGAACT
TCATTACTATACCGTTTATACGTACTATGATTATGGCAGACCCTTGACAACCGGAAATGGCGAGT
GAATCTTGACTGATGGCAGGAGCCATAGTGTACCATCGTGGAAGACAGTACTGAGTTTAATGCTA
TTAAGACACGGAGACTACGCTGGACCCGGAGGCAGTCGCCTAGGC
Right flanking sequence: Indices 23704 -- 24203
CTACCCTCGGTTCCAAACACCCCGGGCTCAAACTTCACCACCATCACCGTGACATTGTCGGTGGT
CAGGCTGTCGATCGCCAACTGGCACAATTTTTTCGCAACCACCGACGCGTCGGCCTCGTGCCGGA
ACTGCTCGGCCACAAACTGGCACGCCCGCGCGTCCAGCAACACGTCCCACACCCCGTCACACGCC
AAAATCATAAACTCGTCGTCGCGGGTGATTTCGGTGGCGGCAGTGAACGGACGCCCGATCACGAG
GTCCTTCATGTAGCAGTCGCCGAGCGACCGGGTCACCGCAAGCACCCCGTTGACCCGGTTCTTCA
TGATCAACCCCCCCAGCTCTTGGATTCGAGCCACCTCAAGCAGATCGGTGGCCTTGTGGTCGTAC
GTCAACCGGTAAGGGACGCCTGCCCGGCACAACACAATGCGCAGGTCGCCCACGTTCAGCATGTA
CATCATGCGACGGTGGCACGGTTGCGGGGTGAACTCGAAACCTGA
Found at i:23665 original size:22 final size:22
Alignment explanation
Indices: 23639--23692 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
23629 GAGGCAGTCG
23639 CCTAGGCAACCTAGGCAACTAA
1 CCTAGGCAACCTAGGCAACTAA
* * *
23661 CCTAGGTAACCTATGCAACTCA
1 CCTAGGCAACCTAGGCAACTAA
23683 CCTAGGCAAC
1 CCTAGGCAAC
23693 TAACCTAGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (22 bp):
CCTAGGCAACCTAGGCAACTAA
Left flanking sequence: Indices 23139 -- 23638
TTTGTATCTAATACCGTCTTCTTACATTACATGTACCTAAGCAGACTTACCGTACCATAAGACGA
TTCAATGCCAGACTAATTGCTTTCGGGTTGCAAGTGAAAATGCCTACCTAAAAATACCTCTCCAG
CCCGTAATTGAACCACGAGTTTTTTCACCGTTGAGCTCTAACATTTTCCCCCACAAGTTATGGAG
GCACTCAGGATTCAAGCACACAGTCCCACCACTACCCTCAGAACAATGCCCCCTTCCACCCCAAT
TGCAAAACCAAAACCGTTAGTTCTACTTCTTCTCCAACATAGCAACCCCTGGATCACTATCTCGT
AAGAACTTCATTACTATACCGTTTATACGTACTATGATTATGGCAGACCCTTGACAACCGGAAAT
GGCGAGTGAATCTTGACTGATGGCAGGAGCCATAGTGTACCATCGTGGAAGACAGTACTGAGTTT
AATGCTATTAAGACACGGAGACTACGCTGGACCCGGAGGCAGTCG
Right flanking sequence: Indices 23693 -- 24192
TAACCTAGGCACTACCCTCGGTTCCAAACACCCCGGGCTCAAACTTCACCACCATCACCGTGACA
TTGTCGGTGGTCAGGCTGTCGATCGCCAACTGGCACAATTTTTTCGCAACCACCGACGCGTCGGC
CTCGTGCCGGAACTGCTCGGCCACAAACTGGCACGCCCGCGCGTCCAGCAACACGTCCCACACCC
CGTCACACGCCAAAATCATAAACTCGTCGTCGCGGGTGATTTCGGTGGCGGCAGTGAACGGACGC
CCGATCACGAGGTCCTTCATGTAGCAGTCGCCGAGCGACCGGGTCACCGCAAGCACCCCGTTGAC
CCGGTTCTTCATGATCAACCCCCCCAGCTCTTGGATTCGAGCCACCTCAAGCAGATCGGTGGCCT
TGTGGTCGTACGTCAACCGGTAAGGGACGCCTGCCCGGCACAACACAATGCGCAGGTCGCCCACG
TTCAGCATGTACATCATGCGACGGTGGCACGGTTGCGGGGTGAAC
Found at i:24281 original size:15 final size:15
Alignment explanation
Indices: 24263--24305 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
24253 GCACCTGAAA
*
24263 CACCCCCTGTTTTTG
1 CACCCCCTGTTTTCG
*
24278 CACCCCCTGTTTGCG
1 CACCCCCTGTTTTCG
24293 CACCCCCTGTTTT
1 CACCCCCTGTTTT
24306 GCCACCGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.07, C:0.44, G:0.14, T:0.35
Consensus pattern (15 bp):
CACCCCCTGTTTTCG
Left flanking sequence: Indices 23763 -- 24262
GGTGGTCAGGCTGTCGATCGCCAACTGGCACAATTTTTTCGCAACCACCGACGCGTCGGCCTCGT
GCCGGAACTGCTCGGCCACAAACTGGCACGCCCGCGCGTCCAGCAACACGTCCCACACCCCGTCA
CACGCCAAAATCATAAACTCGTCGTCGCGGGTGATTTCGGTGGCGGCAGTGAACGGACGCCCGAT
CACGAGGTCCTTCATGTAGCAGTCGCCGAGCGACCGGGTCACCGCAAGCACCCCGTTGACCCGGT
TCTTCATGATCAACCCCCCCAGCTCTTGGATTCGAGCCACCTCAAGCAGATCGGTGGCCTTGTGG
TCGTACGTCAACCGGTAAGGGACGCCTGCCCGGCACAACACAATGCGCAGGTCGCCCACGTTCAG
CATGTACATCATGCGACGGTGGCACGGTTGCGGGGTGAACTCGAAACCTGAAACACCCCCTGTTT
TCGCACCGGGTTCGGAGGTGCTGGTGGGGTCACCAGCACCTGAAA
Right flanking sequence: Indices 24306 -- 24805
GCCACCGTCCACGGGTGGTTTGTCGTCTTTTTTCTCGGTGGCGTCGCCCTTGCTGGGATCGGTCT
CCCACCGCAACACCGCCACCGCAGCAGTGCATCCCAGCGTGCCCACCCCCTGGGTCTCGATCGCC
AGGTCTGCCATGCAAAACACCCGATTTAGCAGCTCCCGCATGTCGTGCTGGCCCACCTGGGGGGC
CAGATCGGGCTCGCGCGCGTCTATCTCTTTCTCAAGCAACTGGTGCATGTTGTTGCCACAGTAGC
GGGCACAGTCCTTGCCTGCGTGGCCGTCAAAGATGGCAAAGTAGCCCCAGTCCACTCGCTCGGCA
AAGTTGGCGATGTAGGTGTGGACGTCTTCCATTTTGTTGCGGTAGGCGGTGTTTTTGTTCTCGGC
CACCCCGACTTTGAACGAAAGCCCCGTGAATGGGTCCATGGTGGTTGGGGTTCTGGTTCGGAATT
GGTCGCGTTTGTAGCAAAGGTGTAAGGGGTGCGAAGGAAGTGGGC
Found at i:24311 original size:15 final size:15
Alignment explanation
Indices: 24263--24311 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
24253 GCACCTGAAA
24263 CACCCCCTGTTTTTG-
1 CACCCCCTG-TTTTGC
24278 CACCCCCTG-TTTGC
1 CACCCCCTGTTTTGC
24292 GCACCCCCTGTTTTGC
1 -CACCCCCTGTTTTGC
24308 CACC
1 CACC
24312 GTCCACGGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.13
15 22 0.71
16 5 0.16
ACGTcount: A:0.08, C:0.47, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCCCCTGTTTTGC
Left flanking sequence: Indices 23763 -- 24262
GGTGGTCAGGCTGTCGATCGCCAACTGGCACAATTTTTTCGCAACCACCGACGCGTCGGCCTCGT
GCCGGAACTGCTCGGCCACAAACTGGCACGCCCGCGCGTCCAGCAACACGTCCCACACCCCGTCA
CACGCCAAAATCATAAACTCGTCGTCGCGGGTGATTTCGGTGGCGGCAGTGAACGGACGCCCGAT
CACGAGGTCCTTCATGTAGCAGTCGCCGAGCGACCGGGTCACCGCAAGCACCCCGTTGACCCGGT
TCTTCATGATCAACCCCCCCAGCTCTTGGATTCGAGCCACCTCAAGCAGATCGGTGGCCTTGTGG
TCGTACGTCAACCGGTAAGGGACGCCTGCCCGGCACAACACAATGCGCAGGTCGCCCACGTTCAG
CATGTACATCATGCGACGGTGGCACGGTTGCGGGGTGAACTCGAAACCTGAAACACCCCCTGTTT
TCGCACCGGGTTCGGAGGTGCTGGTGGGGTCACCAGCACCTGAAA
Right flanking sequence: Indices 24312 -- 24811
GTCCACGGGTGGTTTGTCGTCTTTTTTCTCGGTGGCGTCGCCCTTGCTGGGATCGGTCTCCCACC
GCAACACCGCCACCGCAGCAGTGCATCCCAGCGTGCCCACCCCCTGGGTCTCGATCGCCAGGTCT
GCCATGCAAAACACCCGATTTAGCAGCTCCCGCATGTCGTGCTGGCCCACCTGGGGGGCCAGATC
GGGCTCGCGCGCGTCTATCTCTTTCTCAAGCAACTGGTGCATGTTGTTGCCACAGTAGCGGGCAC
AGTCCTTGCCTGCGTGGCCGTCAAAGATGGCAAAGTAGCCCCAGTCCACTCGCTCGGCAAAGTTG
GCGATGTAGGTGTGGACGTCTTCCATTTTGTTGCGGTAGGCGGTGTTTTTGTTCTCGGCCACCCC
GACTTTGAACGAAAGCCCCGTGAATGGGTCCATGGTGGTTGGGGTTCTGGTTCGGAATTGGTCGC
GTTTGTAGCAAAGGTGTAAGGGGTGCGAAGGAAGTGGGCCGAGAG
Found at i:24829 original size:17 final size:18
Alignment explanation
Indices: 24807--24843 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
24797 GAAGTGGGCC
24807 GAGAGGGGGA-AAGGGTG
1 GAGAGGGGGAGAAGGGTG
*
24824 GAGAGGTGGAGAAGGGTG
1 GAGAGGGGGAGAAGGGTG
24842 GA
1 GA
24844 TGTAGACGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.30, C:0.00, G:0.62, T:0.08
Consensus pattern (18 bp):
GAGAGGGGGAGAAGGGTG
Left flanking sequence: Indices 24307 -- 24806
CCACCGTCCACGGGTGGTTTGTCGTCTTTTTTCTCGGTGGCGTCGCCCTTGCTGGGATCGGTCTC
CCACCGCAACACCGCCACCGCAGCAGTGCATCCCAGCGTGCCCACCCCCTGGGTCTCGATCGCCA
GGTCTGCCATGCAAAACACCCGATTTAGCAGCTCCCGCATGTCGTGCTGGCCCACCTGGGGGGCC
AGATCGGGCTCGCGCGCGTCTATCTCTTTCTCAAGCAACTGGTGCATGTTGTTGCCACAGTAGCG
GGCACAGTCCTTGCCTGCGTGGCCGTCAAAGATGGCAAAGTAGCCCCAGTCCACTCGCTCGGCAA
AGTTGGCGATGTAGGTGTGGACGTCTTCCATTTTGTTGCGGTAGGCGGTGTTTTTGTTCTCGGCC
ACCCCGACTTTGAACGAAAGCCCCGTGAATGGGTCCATGGTGGTTGGGGTTCTGGTTCGGAATTG
GTCGCGTTTGTAGCAAAGGTGTAAGGGGTGCGAAGGAAGTGGGCC
Right flanking sequence: Indices 24844 -- 25343
TGTAGACGGGTTTAGGGGATGTAGAGGGTGTAAAGGGGGTGTGTTGTGGAGGCAATTGGGTTCGA
TTGGGGTTTAATGTGGCTATTGGGTAGGGGTGTATAGTATGGGTAAGGTTTGGTAGTGAGCAGTG
GGAATTGGGGTTATGTGTGAGATGAGGGTTATCGCGTGAGGTGAGGGATGGAAGTGGGCTGTTTA
CGCTATATTAACTGTGGTTTTATGTCTCTACGGCTGTTTACGTAGTTACGCGTTTCGTTGGAACT
CTCGTAAGTCGGTGGAAGCGGTGGAAGTCGGTAGTGGGAACAACGGAATTGCCCAGAACTCCGGT
ATGCACCGAATCAGACAAACCGACGTACCTAGGAATCATACAGGTATGTTGTCTGGAGCCAAGAA
TTGGCCAAGATCACCAGTTCGTTTCTGAGGTCCACCAACGCGTTACCGCAGTGGGAAATAAGGTA
GAGCTGTGGGCAGAGAGTACATTGGATGGTTTCGGGTGATCCCAA
Found at i:25004 original size:18 final size:19
Alignment explanation
Indices: 24981--25020 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
24971 GTGGGAATTG
*
24981 GGGTTAT-GTGTGAGATGA
1 GGGTTATCGCGTGAGATGA
*
24999 GGGTTATCGCGTGAGGTGA
1 GGGTTATCGCGTGAGATGA
25018 GGG
1 GGG
25021 ATGGAAGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.17, C:0.05, G:0.50, T:0.28
Consensus pattern (19 bp):
GGGTTATCGCGTGAGATGA
Left flanking sequence: Indices 24481 -- 24980
TGCTGGCCCACCTGGGGGGCCAGATCGGGCTCGCGCGCGTCTATCTCTTTCTCAAGCAACTGGTG
CATGTTGTTGCCACAGTAGCGGGCACAGTCCTTGCCTGCGTGGCCGTCAAAGATGGCAAAGTAGC
CCCAGTCCACTCGCTCGGCAAAGTTGGCGATGTAGGTGTGGACGTCTTCCATTTTGTTGCGGTAG
GCGGTGTTTTTGTTCTCGGCCACCCCGACTTTGAACGAAAGCCCCGTGAATGGGTCCATGGTGGT
TGGGGTTCTGGTTCGGAATTGGTCGCGTTTGTAGCAAAGGTGTAAGGGGTGCGAAGGAAGTGGGC
CGAGAGGGGGAAAGGGTGGAGAGGTGGAGAAGGGTGGATGTAGACGGGTTTAGGGGATGTAGAGG
GTGTAAAGGGGGTGTGTTGTGGAGGCAATTGGGTTCGATTGGGGTTTAATGTGGCTATTGGGTAG
GGGTGTATAGTATGGGTAAGGTTTGGTAGTGAGCAGTGGGAATTG
Right flanking sequence: Indices 25021 -- 25520
ATGGAAGTGGGCTGTTTACGCTATATTAACTGTGGTTTTATGTCTCTACGGCTGTTTACGTAGTT
ACGCGTTTCGTTGGAACTCTCGTAAGTCGGTGGAAGCGGTGGAAGTCGGTAGTGGGAACAACGGA
ATTGCCCAGAACTCCGGTATGCACCGAATCAGACAAACCGACGTACCTAGGAATCATACAGGTAT
GTTGTCTGGAGCCAAGAATTGGCCAAGATCACCAGTTCGTTTCTGAGGTCCACCAACGCGTTACC
GCAGTGGGAAATAAGGTAGAGCTGTGGGCAGAGAGTACATTGGATGGTTTCGGGTGATCCCAACC
GGCTAAAGTGCTGAGATCATGCAGTCAAATCACCCGTGTTCTTCTTTCCGCTTACTACTCCCACT
GTATCGCTCCCATCATCACTCCCACTACCACCCCCGTATCGCTCCCCACTACCGCCACAAAACCG
ATAGATCGTCTAGGTCTTGGCTAATATGTACGCACCAGCCGTCGA
Found at i:26967 original size:21 final size:21
Alignment explanation
Indices: 26943--27050 Score: 171
Period size: 21 Copynumber: 5.1 Consensus size: 21
26933 GAGGTAGATA
* *
26943 ATGAATGTATGAAAGAGACGG
1 ATGAATGTACGAAAGAGAGGG
* **
26964 ATGAATGTATGAAAGAGTCGG
1 ATGAATGTACGAAAGAGAGGG
26985 ATGAATGTACGAAAGAGAGGG
1 ATGAATGTACGAAAGAGAGGG
27006 ATGAATGTACGAAAGAGAGGG
1 ATGAATGTACGAAAGAGAGGG
27027 ATGAATGTACGAAAGAGAGGG
1 ATGAATGTACGAAAGAGAGGG
27048 ATG
1 ATG
27051 TGTTTATGGA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 83 1.00
ACGTcount: A:0.42, C:0.05, G:0.36, T:0.18
Consensus pattern (21 bp):
ATGAATGTACGAAAGAGAGGG
Left flanking sequence: Indices 26443 -- 26942
ACCAATTGCGTGCTGTGTACGCGTGTGGGCCGTTGGTGCAGTTGCACCCCAAGTCGCAGCCCAAC
GTAGTGTTGAGAACTCTCCAGGGTGTAGTGAACCAAGTAGCGCCGTCGTTGCAGATCGACCTGGG
TCTCAAGTTTGACTACGTCACCCTGGACGACGAGTACCGCCAGTGGATGATTGACAAGAAGCCCA
AGCTCATTGGCACCGTGAGACAGTACAACGACATGTTTGCCCGCGGGAAGAAGCTCACCGAGCCC
GAGTTTGTTGCCAAGTGGCCCAAGAACCTTCCCTTGGTGATTGTCCACGGCACCGACGACTTTAT
CAACGACATCAAGGGGTCGCGGACGTTTGCGCCGTTGGTGCCCAAGGAGGTCGACTTTGAGTTGT
ACGAGGCCGAGAAGGGACGCCACTCGTTGTTTATCGAGAAGGAGGAGATCTTTAGACCCGTGGCG
GACCGGCTCATTGAGTTGGTGAGAAAGACGAAGTAGAGGTAGATA
Right flanking sequence: Indices 27051 -- 27550
TGTTTATGGATTCGCGGATGTGTCAATGGATTGGTGGATGTGTGAATGAATCGCGGATGTTAACC
TCGATCCATTCGACTAAGTAATAGAAAGGGTAGGGCCACCACACGGATACGACTCACAAACAAGC
GTAAAAACAGCCCACGAGTCACCCTTCAATGAGCGAAACCCCCGGGCCCACCAATTGGAGTCCCT
TGTCTAACCACAAAACCACCCGACTCGGCTGGAACCACTCCGGGTCCTCCGCATACTCCCACAGG
ACCCTGCGTCAAAAATACACCACCACACCACGCCCAGACCCACTCCAACCCACCTCAAATTACCT
AAAATAAATCACACGTGGTTCCCGGGTTTTTTTGACGCCACTACAACCCACTTTCTCCCACCACA
CCCTCATTCCATCGCATTTTGTCGGTCCCCATTTCCCCGGGCGTTAGCGAAAATTTTATGCATTT
AAGCGTTTAACGGAATAGCTCACACAATGGGGTTCACCATCAAGC
Found at i:27071 original size:20 final size:20
Alignment explanation
Indices: 27046--27110 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
27036 CGAAAGAGAG
**
27046 GGATGTGTTTATGGATTCGC
1 GGATGTGTCAATGGATTCGC
* *
27066 GGATGTGTCAATGGATTGGT
1 GGATGTGTCAATGGATTCGC
* *
27086 GGATGTGTGAAT-GAATCGC
1 GGATGTGTCAATGGATTCGC
27105 GGATGT
1 GGATGT
27111 TAACCTCGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
19 10 0.27
20 27 0.73
ACGTcount: A:0.20, C:0.08, G:0.38, T:0.34
Consensus pattern (20 bp):
GGATGTGTCAATGGATTCGC
Left flanking sequence: Indices 26546 -- 27045
AGCGCCGTCGTTGCAGATCGACCTGGGTCTCAAGTTTGACTACGTCACCCTGGACGACGAGTACC
GCCAGTGGATGATTGACAAGAAGCCCAAGCTCATTGGCACCGTGAGACAGTACAACGACATGTTT
GCCCGCGGGAAGAAGCTCACCGAGCCCGAGTTTGTTGCCAAGTGGCCCAAGAACCTTCCCTTGGT
GATTGTCCACGGCACCGACGACTTTATCAACGACATCAAGGGGTCGCGGACGTTTGCGCCGTTGG
TGCCCAAGGAGGTCGACTTTGAGTTGTACGAGGCCGAGAAGGGACGCCACTCGTTGTTTATCGAG
AAGGAGGAGATCTTTAGACCCGTGGCGGACCGGCTCATTGAGTTGGTGAGAAAGACGAAGTAGAG
GTAGATAATGAATGTATGAAAGAGACGGATGAATGTATGAAAGAGTCGGATGAATGTACGAAAGA
GAGGGATGAATGTACGAAAGAGAGGGATGAATGTACGAAAGAGAG
Right flanking sequence: Indices 27111 -- 27610
TAACCTCGATCCATTCGACTAAGTAATAGAAAGGGTAGGGCCACCACACGGATACGACTCACAAA
CAAGCGTAAAAACAGCCCACGAGTCACCCTTCAATGAGCGAAACCCCCGGGCCCACCAATTGGAG
TCCCTTGTCTAACCACAAAACCACCCGACTCGGCTGGAACCACTCCGGGTCCTCCGCATACTCCC
ACAGGACCCTGCGTCAAAAATACACCACCACACCACGCCCAGACCCACTCCAACCCACCTCAAAT
TACCTAAAATAAATCACACGTGGTTCCCGGGTTTTTTTGACGCCACTACAACCCACTTTCTCCCA
CCACACCCTCATTCCATCGCATTTTGTCGGTCCCCATTTCCCCGGGCGTTAGCGAAAATTTTATG
CATTTAAGCGTTTAACGGAATAGCTCACACAATGGGGTTCACCATCAAGCAAAAGATCGATATCT
GCTTGTATGCTGAGGCCCACCCCAAGATGACACAGCAGGAGCTTG
Found at i:32200 original size:13 final size:13
Alignment explanation
Indices: 32182--32227 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
32172 TACCCTCAGG
* *
32182 ATTGCAAAACTTA
1 ATTGCAAACCTAA
*
32195 ATTGCATACCTAA
1 ATTGCAAACCTAA
*
32208 ATTGCAAACCTGA
1 ATTGCAAACCTAA
32221 ATTGCAA
1 ATTGCAA
32228 TCTATGTGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (13 bp):
ATTGCAAACCTAA
Left flanking sequence: Indices 31682 -- 32181
AGCACTTTGCCATCAACATCGATGTCAAGCACTACCACGAGCACTCGTTGGGCAAGGACGCCAAT
GCGCGGGCTGCCACCTACATCGAGGCGTCGCTCGACGACAAGGTGCTGCGGTGGGGTGTGGGTAT
CCACACCGATGTGTCGCAGGCGCTGTTCTTGTCGCTCATCTCGATTTTGAACGGGTTGGAGCGCG
CTGGCGAGATCAAGAAGTAGCATGTATTTATAGTGATGAACAACAAGAAAGGATAGAGGGTGATG
GTGGGAAACACTTCGGGTTGTGCATTAATCTTTGTGAATACTTTAGCCCAATTCAGGTTATATTC
ATGGTAGATCCGTTAGCAACGATTATAGTAGAGAAGTGGGTGATTGAAAGGCAGCTTGCAGACTC
GCTCAGCGACTGAAAGAGCAGCTTGCAGACTCACTCAATGCTTTATCAACAGTAAGAGCTAAGGG
GGGCTCGATACTTCGGTCATGCTAATCAATTCTCGTACCCTCAGG
Right flanking sequence: Indices 32228 -- 32727
TCTATGTGTGTGGATAAATCAAATACAAATACACCCAGGTGAGAGCTTCGCTCCTCGGTAAACGC
TCAAAGCTACCCATACCAATGGGACAAGTCTGTCATAACCCTCAGCCTAGCTCCAGCCCGTGTTC
TTTCACGTCCACCCCACCAGCATCCAACTCACCTTCAGTAATCTCCTCTGCCCCCACCCAACACC
TCAGATACCATATTATTACCGTTACATACTCGTTATCATTAGTTACTCCTTCTCTTCCGTGATCA
GCTCCGCCTCTTTCAAAATCGTGTCCATTTTCGCATCTAACTCGTCAAGCATCCGTTCGAGCTGG
GAGGCCTTGGACTCGGCATCGGCAATCTGCTTATAGGTGTCGGCAATGTTGGCCGCAGAGTCGCC
CACGTCGGTGTTCCCGTTAGTCTCCTCCTGTGTCATATGGGTGGTGTAGGGATGGTAGTGTTTAC
GTGGTGCGGCTCACGTGATGGGTCCGACGGAAGTGACGGTAGGAG
Found at i:32908 original size:16 final size:16
Alignment explanation
Indices: 32887--32946 Score: 61
Period size: 18 Copynumber: 3.7 Consensus size: 16
32877 ACTTCGCTTG
32887 CATGTAGACTCACTTA
1 CATGTAGACTCACTTA
32903 CATGTAGACTATCACTTGA
1 CATGTAGAC--TCACTT-A
32922 -ATGTAGACTCA-TTA
1 CATGTAGACTCACTTA
**
32936 CGCGTAGACTC
1 CATGTAGACTC
32947 CAGTTGTCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
14 1 0.03
15 10 0.26
16 12 0.32
18 14 0.37
19 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (16 bp):
CATGTAGACTCACTTA
Left flanking sequence: Indices 32387 -- 32886
CACCTTCAGTAATCTCCTCTGCCCCCACCCAACACCTCAGATACCATATTATTACCGTTACATAC
TCGTTATCATTAGTTACTCCTTCTCTTCCGTGATCAGCTCCGCCTCTTTCAAAATCGTGTCCATT
TTCGCATCTAACTCGTCAAGCATCCGTTCGAGCTGGGAGGCCTTGGACTCGGCATCGGCAATCTG
CTTATAGGTGTCGGCAATGTTGGCCGCAGAGTCGCCCACGTCGGTGTTCCCGTTAGTCTCCTCCT
GTGTCATATGGGTGGTGTAGGGATGGTAGTGTTTACGTGGTGCGGCTCACGTGATGGGTCCGACG
GAAGTGACGGTAGGAGAGGTGAAGAGTAGATCAAAAAGGGTGGAATCAAGGGTTGGTGTGGTTGT
TGAAATCAGTTGATTCAGAAAATAAGATTCGTGACGGTAGTTAATTTGTTCATCAACCAGCTTGA
CGGCAATTATGAAGATTACCAGGGGAAGTAGCGTTACTTCGCTTG
Right flanking sequence: Indices 32947 -- 33446
CAGTTGTCGGCTCCACGCAAGGACCAGTTTTGCCACACTCCAACAATCCTTTCACAGACCAGCAA
TTCATCTGCAACCTTAATAAAATTACGAATTTACTGCAAGTGACAAATGCAACCGACAGCCAAAT
GTACGGAACAATAGCGTTTCATACCAGAGAAGCACACAAAACCGATGTCACAAAAATTCTAGAGT
ATATATAGATGGCGCAATACCTCAGATTGCCATGCGTTTTTCTCTGTTGCTCGCTTTAGCTTCGG
CGACTCTTGCCTTTGACGTCAACGGCCATCCATACACCCAGCCTACGTGGTGGTTCAAAACCCCA
GGTGAGGTGCCTGATGGGGGATACACCCAACTAGAGGGTTCGATGCGCTTTGAACCAGACTCTAG
GCCCTTGGGTTACTACGCGGCCACCAACTTCATGATGGAAAACAAGCAGATCCACTACTTTGGCC
TCTGGGACGGTAACAAGGCCCGGTGGGCGTTCTTTGGTAACGATG
Found at i:32919 original size:18 final size:18
Alignment explanation
Indices: 32877--32930 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
32867 AAGTAGCGTT
*
32877 ACTTCGCTTG-CATGTAG
1 ACTTCACTTGACATGTAG
32894 AC-TCACTT-ACATGTAG
1 ACTTCACTTGACATGTAG
32910 ACTATCACTTGA-ATGTAG
1 ACT-TCACTTGACATGTAG
32928 ACT
1 ACT
32931 CATTACGCGT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
16 14 0.44
17 2 0.06
18 15 0.47
19 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (18 bp):
ACTTCACTTGACATGTAG
Left flanking sequence: Indices 32377 -- 32876
GCATCCAACTCACCTTCAGTAATCTCCTCTGCCCCCACCCAACACCTCAGATACCATATTATTAC
CGTTACATACTCGTTATCATTAGTTACTCCTTCTCTTCCGTGATCAGCTCCGCCTCTTTCAAAAT
CGTGTCCATTTTCGCATCTAACTCGTCAAGCATCCGTTCGAGCTGGGAGGCCTTGGACTCGGCAT
CGGCAATCTGCTTATAGGTGTCGGCAATGTTGGCCGCAGAGTCGCCCACGTCGGTGTTCCCGTTA
GTCTCCTCCTGTGTCATATGGGTGGTGTAGGGATGGTAGTGTTTACGTGGTGCGGCTCACGTGAT
GGGTCCGACGGAAGTGACGGTAGGAGAGGTGAAGAGTAGATCAAAAAGGGTGGAATCAAGGGTTG
GTGTGGTTGTTGAAATCAGTTGATTCAGAAAATAAGATTCGTGACGGTAGTTAATTTGTTCATCA
ACCAGCTTGACGGCAATTATGAAGATTACCAGGGGAAGTAGCGTT
Right flanking sequence: Indices 32931 -- 33430
CATTACGCGTAGACTCCAGTTGTCGGCTCCACGCAAGGACCAGTTTTGCCACACTCCAACAATCC
TTTCACAGACCAGCAATTCATCTGCAACCTTAATAAAATTACGAATTTACTGCAAGTGACAAATG
CAACCGACAGCCAAATGTACGGAACAATAGCGTTTCATACCAGAGAAGCACACAAAACCGATGTC
ACAAAAATTCTAGAGTATATATAGATGGCGCAATACCTCAGATTGCCATGCGTTTTTCTCTGTTG
CTCGCTTTAGCTTCGGCGACTCTTGCCTTTGACGTCAACGGCCATCCATACACCCAGCCTACGTG
GTGGTTCAAAACCCCAGGTGAGGTGCCTGATGGGGGATACACCCAACTAGAGGGTTCGATGCGCT
TTGAACCAGACTCTAGGCCCTTGGGTTACTACGCGGCCACCAACTTCATGATGGAAAACAAGCAG
ATCCACTACTTTGGCCTCTGGGACGGTAACAAGGCCCGGTGGGCG
Found at i:35994 original size:16 final size:16
Alignment explanation
Indices: 35970--36022 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
35960 GAAGGTAATA
*
35970 TCTCTAGGTTAGAGGG
1 TCTCCAGGTTAGAGGG
* **
35986 TCTCCAGGTTAGTGAT
1 TCTCCAGGTTAGAGGG
*
36002 TCTTCAGGTTAGA-GG
1 TCTCCAGGTTAGAGGG
36017 TCTCCA
1 TCTCCA
36023 CGACAGTCAC
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
15 5 0.18
16 23 0.82
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (16 bp):
TCTCCAGGTTAGAGGG
Left flanking sequence: Indices 35470 -- 35969
AAAGATTACTGCTATGAATGACCCTCCACCTAAGGCCAGCCCAGTTGCCGAGCAGGAAACTAACC
ACCGGCTTGTAACGTTTTTCAAAACAAATTCCAACTGTTCTTCGGGATGCAATAAGTGGACAAGT
GACGTTTACAAACTCCGCGAAGTAGAATTGTAGCAGCCATTTGACGCAAATAAGCGTTGGGGGGT
CTGGGGGGCGCCGCTTGCGGCCCCCCAGCTGAGACTGGCCATTTTACAAAGAACATAGCGCGTCC
CGCCTACATCATCACGCTCAATGGGTGTCTAGCTGTGATGCACAGATAAGGATTACTGCCTTGAC
TGACCCTACGCCTAAGGCTAGCCAACTTGTCACTCAGGAAACTAACCCGCCCGCTGGTAACTTTT
TTTGACAGCAACAGTATGTATTGAAACATATTGAATTTACGAGGTGGCTGAAAAATCACCCAGGC
TGCAAAATTACACAACGGATGTCAAGAAAGACCATGAAGGTAATA
Right flanking sequence: Indices 36023 -- 36522
CGACAGTCACTGGACTGGCTTGACACACCAAGTGGAACCACAAAATGTCCGTCTCCGTGTTCCCC
TCTGTTACCGTTGTCGTTCAACCCCAGCAGCGATAGTGCGACGAGTGTACACCTACCAGTTCTAC
ACGTTGTTCAGTGTGGCTGAGCCCTATTATATTTATTACTGAATGCTCTCGTCTATGGATATCTA
ATTGCTGAGCACGCTGTTCGCCGACACAATGCGGGCGCCACTGACCACACGGGTCAGCCGCGCGT
AGTACAACTCGCCCGACACCACGATGTCCGCCTTGGAGTCGTCCTCGGTCTCGTCGTAGATAGTC
GCGTCGCTCAGGTCCAGCACCTCCACGTCGTACTTGACCGAGGGGTCGTACTGCGGGATCTGGGG
CGCAAACCGGTACAGCGCCGGCGTCTCGTACTCCGCAGGCGTCTCGTACTCCGCGTAGGGCTGGT
AGCGCACGGCTTCCTCGTCGTCGTCGCTCTCCTCGTCCTCCTCCA
Found at i:36453 original size:18 final size:18
Alignment explanation
Indices: 36432--36466 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
36422 GTACAGCGCC
36432 GGCGTCTCGTACTCCGCA
1 GGCGTCTCGTACTCCGCA
36450 GGCGTCTCGTACTCCGC
1 GGCGTCTCGTACTCCGC
36467 GTAGGGCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.09, C:0.40, G:0.29, T:0.23
Consensus pattern (18 bp):
GGCGTCTCGTACTCCGCA
Left flanking sequence: Indices 35932 -- 36431
TTACACAACGGATGTCAAGAAAGACCATGAAGGTAATATCTCTAGGTTAGAGGGTCTCCAGGTTA
GTGATTCTTCAGGTTAGAGGTCTCCACGACAGTCACTGGACTGGCTTGACACACCAAGTGGAACC
ACAAAATGTCCGTCTCCGTGTTCCCCTCTGTTACCGTTGTCGTTCAACCCCAGCAGCGATAGTGC
GACGAGTGTACACCTACCAGTTCTACACGTTGTTCAGTGTGGCTGAGCCCTATTATATTTATTAC
TGAATGCTCTCGTCTATGGATATCTAATTGCTGAGCACGCTGTTCGCCGACACAATGCGGGCGCC
ACTGACCACACGGGTCAGCCGCGCGTAGTACAACTCGCCCGACACCACGATGTCCGCCTTGGAGT
CGTCCTCGGTCTCGTCGTAGATAGTCGCGTCGCTCAGGTCCAGCACCTCCACGTCGTACTTGACC
GAGGGGTCGTACTGCGGGATCTGGGGCGCAAACCGGTACAGCGCC
Right flanking sequence: Indices 36467 -- 36966
GTAGGGCTGGTAGCGCACGGCTTCCTCGTCGTCGTCGCTCTCCTCGTCCTCCTCCACCACGCGGG
ACATCTCGTAGCTCAGGTACCGCTGGGCAAAGCTCGGGGGCTCCAGCAACAAGTGGCGGGTGGAG
AACAGCCGCTCCAACTCGTCGCCAAGCGCCAGCGCGTACATCAGCGGCGTCACCAGCTGGACCAG
CTCCAGCCGCGGGAGCTCGCGCTTGACCTCGTCCGGAGAAATGGTAAAGTCCCGGTCGAAGTAGG
TCACAAAGTCGTCGACGAGGCCCAGGTGGATCGAGTGGTCGAGGGTGGATTCGCCGCTGGCAAGA
CGCAGCGGGACGTGGCCACCAGAGGACACGCGGGGAGCAGAAGCAGCCACGGGAGCTCCCGAAAC
CGCCCGAGAACCGGGCTTGGAGCCATGGAAACCAGGCTTGGAGCCATGGAAACCGGGCTTGGAGC
CATGGAAACCACGCTTGGAGCCCTGAGAGCTCGTTCTCGACCCCT
Found at i:36894 original size:21 final size:21
Alignment explanation
Indices: 36865--36943 Score: 131
Period size: 21 Copynumber: 3.8 Consensus size: 21
36855 ACCGCCCGAG
*
36865 AACCGGGCTTGGAGCCATGGA
1 AACCAGGCTTGGAGCCATGGA
36886 AACCAGGCTTGGAGCCATGGA
1 AACCAGGCTTGGAGCCATGGA
*
36907 AACCGGGCTTGGAGCCATGGA
1 AACCAGGCTTGGAGCCATGGA
*
36928 AACCACGCTTGGAGCC
1 AACCAGGCTTGGAGCC
36944 CTGAGAGCTC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.25, C:0.27, G:0.34, T:0.14
Consensus pattern (21 bp):
AACCAGGCTTGGAGCCATGGA
Left flanking sequence: Indices 36365 -- 36864
CACCTCCACGTCGTACTTGACCGAGGGGTCGTACTGCGGGATCTGGGGCGCAAACCGGTACAGCG
CCGGCGTCTCGTACTCCGCAGGCGTCTCGTACTCCGCGTAGGGCTGGTAGCGCACGGCTTCCTCG
TCGTCGTCGCTCTCCTCGTCCTCCTCCACCACGCGGGACATCTCGTAGCTCAGGTACCGCTGGGC
AAAGCTCGGGGGCTCCAGCAACAAGTGGCGGGTGGAGAACAGCCGCTCCAACTCGTCGCCAAGCG
CCAGCGCGTACATCAGCGGCGTCACCAGCTGGACCAGCTCCAGCCGCGGGAGCTCGCGCTTGACC
TCGTCCGGAGAAATGGTAAAGTCCCGGTCGAAGTAGGTCACAAAGTCGTCGACGAGGCCCAGGTG
GATCGAGTGGTCGAGGGTGGATTCGCCGCTGGCAAGACGCAGCGGGACGTGGCCACCAGAGGACA
CGCGGGGAGCAGAAGCAGCCACGGGAGCTCCCGAAACCGCCCGAG
Right flanking sequence: Indices 36944 -- 37443
CTGAGAGCTCGTTCTCGACCCCTGGCTCACGTGGCGTTCGGCCCCGCTCACTTGGCGTTTGTAGG
TGGGGATGGGGCCGGGAACAGAGTACATGAGCGGCGCCGCCTTGGGCTCAGGCCCGGGCTCCTCG
TGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCAAGCGGCACCGCGTCCACGCA
GTCGCCCTGCTTGACGAACAACGACGAGTTGTCGCGGGTCACCTGCTCCCAGTTGGAGCCGCCGT
CCGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCGCGAGGGTGGCACCCGAGGGA
GCGCGTCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGATTTTTTGGGCTCGGGGGC
CACCAGCGGCATCAGCACGTCGCGGACGAGGGTCAGGGCCATGCGGTCGACGTTGGCCAGCAGCT
GGCGCAGCGTGGGGGCGGTGGACGGCTGGGAGCCCGGAGCCAGCG
Found at i:37454 original size:24 final size:24
Alignment explanation
Indices: 37427--37480 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
37417 TGGACGGCTG
* *
37427 GGAGCCCGGAGCCAGCGTGGGAGC
1 GGAGCCAGGAGCCAGCGAGGGAGC
*
37451 GGAGCCAGGAGTCAGCGAGGGAGC
1 GGAGCCAGGAGCCAGCGAGGGAGC
*
37475 CGAGCC
1 GGAGCC
37481 TGGTGTCAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.28, G:0.48, T:0.04
Consensus pattern (24 bp):
GGAGCCAGGAGCCAGCGAGGGAGC
Left flanking sequence: Indices 36927 -- 37426
AAACCACGCTTGGAGCCCTGAGAGCTCGTTCTCGACCCCTGGCTCACGTGGCGTTCGGCCCCGCT
CACTTGGCGTTTGTAGGTGGGGATGGGGCCGGGAACAGAGTACATGAGCGGCGCCGCCTTGGGCT
CAGGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCAAGC
GGCACCGCGTCCACGCAGTCGCCCTGCTTGACGAACAACGACGAGTTGTCGCGGGTCACCTGCTC
CCAGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCGCGA
GGGTGGCACCCGAGGGAGCGCGTCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGAT
TTTTTGGGCTCGGGGGCCACCAGCGGCATCAGCACGTCGCGGACGAGGGTCAGGGCCATGCGGTC
GACGTTGGCCAGCAGCTGGCGCAGCGTGGGGGCGGTGGACGGCTG
Right flanking sequence: Indices 37481 -- 37980
TGGTGTCAGACTGGGAGCAGTCCCAGGAGCAGTGCCAGGAGCGGTGCCAGGGGCAGTCCCAGGAA
CCAGGTTGGGAACAGACCCAGGAACCAGGTTGGGAACCAGGTTGGAAGCGGTCCCGGGAACCAGG
TTCGGAACCAGGTTGGGAACACTCCCCGGCGCCAGTGGCTGCTTCGACGACGGCGCCGAGTGCGC
AGCCACCATCGCCGCCACCGTGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGG
CCTTGCGCACGGGGTCCGCCAACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTGTGGCTT
GCCAGCTCGTGGAGAATCTGGCGGGCTGGCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGGC
GTGGTCGAGCCCGCTGGCGTGGAGCCCACCCTGGTCACCGTGGTCGTACGCCTGTGCCATGGGAG
CCGCCATCGGAGCCAGCTTCAGCGTCTGGACCCGTGCCTGTTGTG
Found at i:37488 original size:24 final size:24
Alignment explanation
Indices: 37428--37489 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
37418 GGACGGCTGG
* * * *
37428 GAGCCCGGAGCCAGCGTGGGAGCG
1 GAGCCAGGAGTCAGCGAGGGAGCC
37452 GAGCCAGGAGTCAGCGAGGGAGCC
1 GAGCCAGGAGTCAGCGAGGGAGCC
* *
37476 GAGCCTGGTGTCAG
1 GAGCCAGGAGTCAG
37490 ACTGGGAGCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.19, C:0.26, G:0.47, T:0.08
Consensus pattern (24 bp):
GAGCCAGGAGTCAGCGAGGGAGCC
Left flanking sequence: Indices 36928 -- 37427
AACCACGCTTGGAGCCCTGAGAGCTCGTTCTCGACCCCTGGCTCACGTGGCGTTCGGCCCCGCTC
ACTTGGCGTTTGTAGGTGGGGATGGGGCCGGGAACAGAGTACATGAGCGGCGCCGCCTTGGGCTC
AGGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCAAGCG
GCACCGCGTCCACGCAGTCGCCCTGCTTGACGAACAACGACGAGTTGTCGCGGGTCACCTGCTCC
CAGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCGCGAG
GGTGGCACCCGAGGGAGCGCGTCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGATT
TTTTGGGCTCGGGGGCCACCAGCGGCATCAGCACGTCGCGGACGAGGGTCAGGGCCATGCGGTCG
ACGTTGGCCAGCAGCTGGCGCAGCGTGGGGGCGGTGGACGGCTGG
Right flanking sequence: Indices 37490 -- 37989
ACTGGGAGCAGTCCCAGGAGCAGTGCCAGGAGCGGTGCCAGGGGCAGTCCCAGGAACCAGGTTGG
GAACAGACCCAGGAACCAGGTTGGGAACCAGGTTGGAAGCGGTCCCGGGAACCAGGTTCGGAACC
AGGTTGGGAACACTCCCCGGCGCCAGTGGCTGCTTCGACGACGGCGCCGAGTGCGCAGCCACCAT
CGCCGCCACCGTGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGCCTTGCGCA
CGGGGTCCGCCAACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTGTGGCTTGCCAGCTCG
TGGAGAATCTGGCGGGCTGGCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGGCGTGGTCGAG
CCCGCTGGCGTGGAGCCCACCCTGGTCACCGTGGTCGTACGCCTGTGCCATGGGAGCCGCCATCG
GAGCCAGCTTCAGCGTCTGGACCCGTGCCTGTTGTGCGGCCGCCA
Found at i:37511 original size:12 final size:12
Alignment explanation
Indices: 37494--37544 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
37484 TGTCAGACTG
37494 GGAGCAGTCCCA
1 GGAGCAGTCCCA
*
37506 GGAGCAGTGCCA
1 GGAGCAGTCCCA
* *
37518 GGAGCGGTGCCA
1 GGAGCAGTCCCA
*
37530 GGGGCAGTCCCA
1 GGAGCAGTCCCA
37542 GGA
1 GGA
37545 ACCAGGTTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.22, C:0.27, G:0.43, T:0.08
Consensus pattern (12 bp):
GGAGCAGTCCCA
Left flanking sequence: Indices 36994 -- 37493
CTTGGCGTTTGTAGGTGGGGATGGGGCCGGGAACAGAGTACATGAGCGGCGCCGCCTTGGGCTCA
GGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCAAGCGG
CACCGCGTCCACGCAGTCGCCCTGCTTGACGAACAACGACGAGTTGTCGCGGGTCACCTGCTCCC
AGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCGCGAGG
GTGGCACCCGAGGGAGCGCGTCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGATTT
TTTGGGCTCGGGGGCCACCAGCGGCATCAGCACGTCGCGGACGAGGGTCAGGGCCATGCGGTCGA
CGTTGGCCAGCAGCTGGCGCAGCGTGGGGGCGGTGGACGGCTGGGAGCCCGGAGCCAGCGTGGGA
GCGGAGCCAGGAGTCAGCGAGGGAGCCGAGCCTGGTGTCAGACTG
Right flanking sequence: Indices 37545 -- 38044
ACCAGGTTGGGAACAGACCCAGGAACCAGGTTGGGAACCAGGTTGGAAGCGGTCCCGGGAACCAG
GTTCGGAACCAGGTTGGGAACACTCCCCGGCGCCAGTGGCTGCTTCGACGACGGCGCCGAGTGCG
CAGCCACCATCGCCGCCACCGTGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTG
GCCTTGCGCACGGGGTCCGCCAACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTGTGGCT
TGCCAGCTCGTGGAGAATCTGGCGGGCTGGCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGG
CGTGGTCGAGCCCGCTGGCGTGGAGCCCACCCTGGTCACCGTGGTCGTACGCCTGTGCCATGGGA
GCCGCCATCGGAGCCAGCTTCAGCGTCTGGACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGG
CGCCAGAACCAGCTGGGGAACGGGGTTTTCGGGCGACTGCGGCAA
Found at i:37581 original size:12 final size:12
Alignment explanation
Indices: 37566--37630 Score: 71
Period size: 12 Copynumber: 5.4 Consensus size: 12
37556 AACAGACCCA
37566 GGAACCAGGTTG
1 GGAACCAGGTTG
37578 GGAACCAGGTT-
1 GGAACCAGGTTG
* *
37589 GGAAGC-GGTCCCG
1 GGAACCAGGT--TG
*
37602 GGAACCAGGTTC
1 GGAACCAGGTTG
37614 GGAACCAGGTTG
1 GGAACCAGGTTG
37626 GGAAC
1 GGAAC
37631 ACTCCCCGGC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
10 3 0.07
11 5 0.12
12 27 0.63
13 5 0.12
14 3 0.07
ACGTcount: A:0.25, C:0.22, G:0.40, T:0.14
Consensus pattern (12 bp):
GGAACCAGGTTG
Left flanking sequence: Indices 37066 -- 37565
GCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCCGGCCGCGAGCCAAGCGGCACCGCG
TCCACGCAGTCGCCCTGCTTGACGAACAACGACGAGTTGTCGCGGGTCACCTGCTCCCAGTTGGA
GCCGCCGTCCGCGTAGATGTCGCGGTAGAACGACGGCAGCTCGGGCATCAGCGCGAGGGTGGCAC
CCGAGGGAGCGCGTCCGCCCACCGAGTGCCACGGCAAGTCCACCTTGAAGAGCGATTTTTTGGGC
TCGGGGGCCACCAGCGGCATCAGCACGTCGCGGACGAGGGTCAGGGCCATGCGGTCGACGTTGGC
CAGCAGCTGGCGCAGCGTGGGGGCGGTGGACGGCTGGGAGCCCGGAGCCAGCGTGGGAGCGGAGC
CAGGAGTCAGCGAGGGAGCCGAGCCTGGTGTCAGACTGGGAGCAGTCCCAGGAGCAGTGCCAGGA
GCGGTGCCAGGGGCAGTCCCAGGAACCAGGTTGGGAACAGACCCA
Right flanking sequence: Indices 37631 -- 38130
ACTCCCCGGCGCCAGTGGCTGCTTCGACGACGGCGCCGAGTGCGCAGCCACCATCGCCGCCACCG
TGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGCCTTGCGCACGGGGTCCGCC
AACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTGTGGCTTGCCAGCTCGTGGAGAATCTG
GCGGGCTGGCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGGCGTGGTCGAGCCCGCTGGCGT
GGAGCCCACCCTGGTCACCGTGGTCGTACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTC
AGCGTCTGGACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAAC
GGGGTTTTCGGGCGACTGCGGCAACACCAGCGGTCTCACCGTCTTCAGTTTGAGCGCGGGCGCGG
GCGAGTACAAGTGCTCGTACTCGTGGGTGGTGCCTCGGGGGACAA
Found at i:37582 original size:36 final size:36
Alignment explanation
Indices: 37542--37631 Score: 128
Period size: 36 Copynumber: 2.5 Consensus size: 36
37532 GGCAGTCCCA
*
37542 GGAACCAGGTTGGGAACAGACCCAGGAACCAGGTTG
1 GGAACCAGGTTGGGAACAGACCCAGGAACCAGGTTC
* * *
37578 GGAACCAGGTT-GGAAGCGGTCCCGGGAACCAGGTTC
1 GGAACCAGGTTGGGAA-CAGACCCAGGAACCAGGTTC
37614 GGAACCAGGTTGGGAACA
1 GGAACCAGGTTGGGAACA
37632 CTCCCCGGCG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
35 4 0.09
36 39 0.83
37 4 0.09
ACGTcount: A:0.28, C:0.22, G:0.38, T:0.12
Consensus pattern (36 bp):
GGAACCAGGTTGGGAACAGACCCAGGAACCAGGTTC
Left flanking sequence: Indices 37042 -- 37541
GCGCCGCCTTGGGCTCAGGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCC
GGCCGCGAGCCAAGCGGCACCGCGTCCACGCAGTCGCCCTGCTTGACGAACAACGACGAGTTGTC
GCGGGTCACCTGCTCCCAGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGAACGACGGCAGCT
CGGGCATCAGCGCGAGGGTGGCACCCGAGGGAGCGCGTCCGCCCACCGAGTGCCACGGCAAGTCC
ACCTTGAAGAGCGATTTTTTGGGCTCGGGGGCCACCAGCGGCATCAGCACGTCGCGGACGAGGGT
CAGGGCCATGCGGTCGACGTTGGCCAGCAGCTGGCGCAGCGTGGGGGCGGTGGACGGCTGGGAGC
CCGGAGCCAGCGTGGGAGCGGAGCCAGGAGTCAGCGAGGGAGCCGAGCCTGGTGTCAGACTGGGA
GCAGTCCCAGGAGCAGTGCCAGGAGCGGTGCCAGGGGCAGTCCCA
Right flanking sequence: Indices 37632 -- 38131
CTCCCCGGCGCCAGTGGCTGCTTCGACGACGGCGCCGAGTGCGCAGCCACCATCGCCGCCACCGT
GGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGCCTTGCGCACGGGGTCCGCCA
ACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTGTGGCTTGCCAGCTCGTGGAGAATCTGG
CGGGCTGGCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGGCGTGGTCGAGCCCGCTGGCGTG
GAGCCCACCCTGGTCACCGTGGTCGTACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCA
GCGTCTGGACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAACG
GGGTTTTCGGGCGACTGCGGCAACACCAGCGGTCTCACCGTCTTCAGTTTGAGCGCGGGCGCGGG
CGAGTACAAGTGCTCGTACTCGTGGGTGGTGCCTCGGGGGACAAA
Found at i:37628 original size:24 final size:24
Alignment explanation
Indices: 37542--37630 Score: 85
Period size: 24 Copynumber: 3.7 Consensus size: 24
37532 GGCAGTCCCA
***
37542 GGAACCAGGTTGGGAA-CAGACCC
1 GGAACCAGGTTGGGAACCAGGTTC
37565 AGGAACCAGGTTGGGAACCAGGTT-
1 -GGAACCAGGTTGGGAACCAGGTTC
* *
37589 GGAAGC-GGTCCCGGGAACCAGGTTC
1 GGAACCAGGT--TGGGAACCAGGTTC
37614 GGAACCAGGTTGGGAAC
1 GGAACCAGGTTGGGAAC
37631 ACTCCCCGGC
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
22 3 0.06
23 5 0.09
24 34 0.64
25 8 0.15
26 3 0.06
ACGTcount: A:0.27, C:0.22, G:0.38, T:0.12
Consensus pattern (24 bp):
GGAACCAGGTTGGGAACCAGGTTC
Left flanking sequence: Indices 37042 -- 37541
GCGCCGCCTTGGGCTCAGGCCCGGGCTCCTCGTGCAAGGTGCTGCCCAGGCCCATCCGCGAGCCC
GGCCGCGAGCCAAGCGGCACCGCGTCCACGCAGTCGCCCTGCTTGACGAACAACGACGAGTTGTC
GCGGGTCACCTGCTCCCAGTTGGAGCCGCCGTCCGCGTAGATGTCGCGGTAGAACGACGGCAGCT
CGGGCATCAGCGCGAGGGTGGCACCCGAGGGAGCGCGTCCGCCCACCGAGTGCCACGGCAAGTCC
ACCTTGAAGAGCGATTTTTTGGGCTCGGGGGCCACCAGCGGCATCAGCACGTCGCGGACGAGGGT
CAGGGCCATGCGGTCGACGTTGGCCAGCAGCTGGCGCAGCGTGGGGGCGGTGGACGGCTGGGAGC
CCGGAGCCAGCGTGGGAGCGGAGCCAGGAGTCAGCGAGGGAGCCGAGCCTGGTGTCAGACTGGGA
GCAGTCCCAGGAGCAGTGCCAGGAGCGGTGCCAGGGGCAGTCCCA
Right flanking sequence: Indices 37631 -- 38130
ACTCCCCGGCGCCAGTGGCTGCTTCGACGACGGCGCCGAGTGCGCAGCCACCATCGCCGCCACCG
TGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGCCTTGCGCACGGGGTCCGCC
AACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTGTGGCTTGCCAGCTCGTGGAGAATCTG
GCGGGCTGGCTCGTGGTGGATCTGGGTCTGGTCGAGCTCGCTGGCGTGGTCGAGCCCGCTGGCGT
GGAGCCCACCCTGGTCACCGTGGTCGTACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTC
AGCGTCTGGACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAAC
GGGGTTTTCGGGCGACTGCGGCAACACCAGCGGTCTCACCGTCTTCAGTTTGAGCGCGGGCGCGG
GCGAGTACAAGTGCTCGTACTCGTGGGTGGTGCCTCGGGGGACAA
Found at i:37877 original size:18 final size:18
Alignment explanation
Indices: 37854--37892 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
37844 GATCTGGGTC
*
37854 TGGTCGAGCTCGCTGGCG
1 TGGTCGAGCCCGCTGGCG
37872 TGGTCGAGCCCGCTGGCG
1 TGGTCGAGCCCGCTGGCG
37890 TGG
1 TGG
37893 AGCCCACCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.28, G:0.46, T:0.21
Consensus pattern (18 bp):
TGGTCGAGCCCGCTGGCG
Left flanking sequence: Indices 37354 -- 37853
CGCGGACGAGGGTCAGGGCCATGCGGTCGACGTTGGCCAGCAGCTGGCGCAGCGTGGGGGCGGTG
GACGGCTGGGAGCCCGGAGCCAGCGTGGGAGCGGAGCCAGGAGTCAGCGAGGGAGCCGAGCCTGG
TGTCAGACTGGGAGCAGTCCCAGGAGCAGTGCCAGGAGCGGTGCCAGGGGCAGTCCCAGGAACCA
GGTTGGGAACAGACCCAGGAACCAGGTTGGGAACCAGGTTGGAAGCGGTCCCGGGAACCAGGTTC
GGAACCAGGTTGGGAACACTCCCCGGCGCCAGTGGCTGCTTCGACGACGGCGCCGAGTGCGCAGC
CACCATCGCCGCCACCGTGGAGTAGCCCATGGCACTGCGGTGGGCCACGAGCGGCTCGGTGGCCT
TGCGCACGGGGTCCGCCAACGGGTGCACCAACGGACGCGCTGGCTCGTGGTGGGTGTGGCTTGCC
AGCTCGTGGAGAATCTGGCGGGCTGGCTCGTGGTGGATCTGGGTC
Right flanking sequence: Indices 37893 -- 38392
AGCCCACCCTGGTCACCGTGGTCGTACGCCTGTGCCATGGGAGCCGCCATCGGAGCCAGCTTCAG
CGTCTGGACCCGTGCCTGTTGTGCGGCCGCCAACGCGAGCGGCGCCAGAACCAGCTGGGGAACGG
GGTTTTCGGGCGACTGCGGCAACACCAGCGGTCTCACCGTCTTCAGTTTGAGCGCGGGCGCGGGC
GAGTACAAGTGCTCGTACTCGTGGGTGGTGCCTCGGGGGACAAAGGTGTCGGGGATGTTCTTCTG
GGCCAGTTCGGACCGCGTGAGGCCCTGGGCAGAGGCACGGGCGGCACGGGGTGCGTCCGGAGCCG
TGGTGTGGTTGGTTTTGGTCTTCCCGTGGATCTTCCCCTGGTCCGTCTTGCTCTGTTTCGGGCCC
TGGTCGCTCTGGGCGCCCAGTTTGCGTTTGATGCCCGAGAAGAGCGACGAGATGAACGAGCGCCG
CTTCTTCGGGGTGGGAGTGGCCTCGGTGGTCTCAGAAACCACCTG
Found at i:38505 original size:12 final size:12
Alignment explanation
Indices: 38497--38541 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
38487 GTTGTCTCTG
*
38497 TGGCCGTCTCCG
1 TGGCCGTCTCCC
*
38509 TGGACGTCTCCC
1 TGGCCGTCTCCC
38521 TGGCCGTCTCCC
1 TGGCCGTCTCCC
38533 TGGCCGTCT
1 TGGCCGTCT
38542 TCGTGGTCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.02, C:0.42, G:0.29, T:0.27
Consensus pattern (12 bp):
TGGCCGTCTCCC
Left flanking sequence: Indices 37997 -- 38496
CGGCGCCAGAACCAGCTGGGGAACGGGGTTTTCGGGCGACTGCGGCAACACCAGCGGTCTCACCG
TCTTCAGTTTGAGCGCGGGCGCGGGCGAGTACAAGTGCTCGTACTCGTGGGTGGTGCCTCGGGGG
ACAAAGGTGTCGGGGATGTTCTTCTGGGCCAGTTCGGACCGCGTGAGGCCCTGGGCAGAGGCACG
GGCGGCACGGGGTGCGTCCGGAGCCGTGGTGTGGTTGGTTTTGGTCTTCCCGTGGATCTTCCCCT
GGTCCGTCTTGCTCTGTTTCGGGCCCTGGTCGCTCTGGGCGCCCAGTTTGCGTTTGATGCCCGAG
AAGAGCGACGAGATGAACGAGCGCCGCTTCTTCGGGGTGGGAGTGGCCTCGGTGGTCTCAGAAAC
CACCTGGGCGGTCTTGGCCTTCAGCTTCTCCTTCTTTGGCGACTCCACGTACCCGACGCTCGCCA
TGTTGGCCACGGTGGCCGTCTCCGCCACCCCGGTGGTTGTCTCTG
Right flanking sequence: Indices 38542 -- 39041
TCGTGGTCTCATCACTCGCTCCGCGTGCTTTCTCCTTCCGCCGCACCACCGTCCCGCTGCGGTTC
CACTCGGGCTCCTTTTGCGCCACCGGGTACGCCACGGGGCTGTACGCCTTCACCGCGTACGGACG
GGTCTCGGTGCAGAAGTGCTCGACGCCACTAGCGGTCAGCTCTATCATCAGCACCGACACCGCGC
CCACGCTGTCTCCGAGCGTCTTGTAGTACTGGGCCACCATTTTGCGCACGAACCGCGGCAACTCC
GCGGCCCCGATCACCTTGGGCGCCACCACCACCAGCCCCAGCCGGTTCTGGGCTGCCACCACGAG
GCAGTCGAGGTCGTCCTCGCAGATGTGCGCGGTGACCACCGCCTCCACCGCAGGGTGCGAGTCCA
AGAACCCGCCCATCTCCGCCAGATCAAGCACCTCCAAGCAGAGCGCGATGGGCAGCTTGCAGAGC
TCGTCGTTGTAGGCGTCCTGGGTGTGCGCAGCGTAGTAGGTGTGG
Found at i:41216 original size:5 final size:5
Alignment explanation
Indices: 41206--41234 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
41196 TGCAGGAAGG
41206 AGGGA AGGGA A-GGA AGGGA AGGGA AGGGA
1 AGGGA AGGGA AGGGA AGGGA AGGGA AGGGA
41235 TGGAGAAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (5 bp):
AGGGA
Left flanking sequence: Indices 40706 -- 41205
CGTCACCAGGCGGGTGCAGAGCTGGCCCAGGCTCACGTTCTTGAACACCAAGATCGTCATGTAGC
CAAACACCAAGGGATCATAACCAATGAACCAGTGGGCGTGGGCACAGATGTCGTCCCACGCGCTG
GGGTCGAGCGGGGGGCACTGCGGGTCGAAGCCTCCGCGGAGCGGGAGCATCCACTCGCCGTGGGG
CCGGCCCAGGCCCTGGGTGGACGCGGTGGTTGCGGTGGCGGTGGTCTTTTGTGATACGATCGTCA
GGGTGCGGGCTAGCGGCGGGGCCGACGCGGCCCAGTAGTCCTTGTCGTGCTCCCCGCTGGCGTAG
CGGTGGTAGATGCTCATGGAGAGGGCGGGGAACTACCGTGTGTGTGGAGCGACGGGTATCAGTGG
CTATTTTAAGGGAAAAAGTGCGTATTTACCCTGGGCCCGGTGGGTGGATGCTCGATGCAGATTGT
TTATGTTTTGGCCGGATGGGGACGACAACACGGAATGCAGGAAGG
Right flanking sequence: Indices 41235 -- 41734
TGGAGAAAGGGATGAGAGAAAAAGATTAGGTGTGTGGGGGGAGGGTGTGGTGCGGTGTGGTGAGT
GGTGAGTGGTGAGTGGTGAGTGGTGTGTGTGGGTGGTGTGTGTAGTTTGTGTGTGTAGTTTGTGT
ACGCTGGGTTGATCGTTTTACCTGGATATGCATAATTTTACGTCGCGTCATCACGGTTGAGAAGG
TAACCAAACGACCTGGTTACGGGTCAGGTGATGTGGGGATGAGGCTAGGGTGGAGAGAGAAGGAG
AAGGAAGGTGAGTGTAGGAGAGGGAAGGAGAGGGAAGGGAGGGAAGGGGACGGTGAGCGGGCAGT
AGTGTGTGTAAAGGTGGAGGAATGAGTGCCATGGAGTCGCGTGACCGCGTCAGGGCAACCCAAAA
CGGACTAAATGGTGGCCGTGGTGGCCATGTGTGTCCCAATCGGGTTGGCAAAGGGCACGCCTGAC
GATGGCGGACGAACCTAATGTGTGACCAATACGGACAGCAACCGG
Found at i:41225 original size:14 final size:13
Alignment explanation
Indices: 41200--41232 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
41190 ACGGAATGCA
41200 GGAAGGAGGGAAG
1 GGAAGGAGGGAAG
41213 GGAAGGAAGGGAAG
1 GGAAGG-AGGGAAG
41227 GGAAGG
1 GGAAGG
41233 GATGGAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (13 bp):
GGAAGGAGGGAAG
Left flanking sequence: Indices 40700 -- 41199
GTAGCGCGTCACCAGGCGGGTGCAGAGCTGGCCCAGGCTCACGTTCTTGAACACCAAGATCGTCA
TGTAGCCAAACACCAAGGGATCATAACCAATGAACCAGTGGGCGTGGGCACAGATGTCGTCCCAC
GCGCTGGGGTCGAGCGGGGGGCACTGCGGGTCGAAGCCTCCGCGGAGCGGGAGCATCCACTCGCC
GTGGGGCCGGCCCAGGCCCTGGGTGGACGCGGTGGTTGCGGTGGCGGTGGTCTTTTGTGATACGA
TCGTCAGGGTGCGGGCTAGCGGCGGGGCCGACGCGGCCCAGTAGTCCTTGTCGTGCTCCCCGCTG
GCGTAGCGGTGGTAGATGCTCATGGAGAGGGCGGGGAACTACCGTGTGTGTGGAGCGACGGGTAT
CAGTGGCTATTTTAAGGGAAAAAGTGCGTATTTACCCTGGGCCCGGTGGGTGGATGCTCGATGCA
GATTGTTTATGTTTTGGCCGGATGGGGACGACAACACGGAATGCA
Right flanking sequence: Indices 41233 -- 41732
GATGGAGAAAGGGATGAGAGAAAAAGATTAGGTGTGTGGGGGGAGGGTGTGGTGCGGTGTGGTGA
GTGGTGAGTGGTGAGTGGTGAGTGGTGTGTGTGGGTGGTGTGTGTAGTTTGTGTGTGTAGTTTGT
GTACGCTGGGTTGATCGTTTTACCTGGATATGCATAATTTTACGTCGCGTCATCACGGTTGAGAA
GGTAACCAAACGACCTGGTTACGGGTCAGGTGATGTGGGGATGAGGCTAGGGTGGAGAGAGAAGG
AGAAGGAAGGTGAGTGTAGGAGAGGGAAGGAGAGGGAAGGGAGGGAAGGGGACGGTGAGCGGGCA
GTAGTGTGTGTAAAGGTGGAGGAATGAGTGCCATGGAGTCGCGTGACCGCGTCAGGGCAACCCAA
AACGGACTAAATGGTGGCCGTGGTGGCCATGTGTGTCCCAATCGGGTTGGCAAAGGGCACGCCTG
ACGATGGCGGACGAACCTAATGTGTGACCAATACGGACAGCAACC
Found at i:41303 original size:7 final size:7
Alignment explanation
Indices: 41291--41337 Score: 69
Period size: 7 Copynumber: 6.9 Consensus size: 7
41281 GTGGTGCGGT
41291 GTGGTGA
1 GTGGTGA
41298 GTGGTGA
1 GTGGTGA
41305 GTGGTGA
1 GTGGTGA
41312 GTGGTGA
1 GTGGTGA
*
41319 GTGGTGT
1 GTGGTGA
*
41326 GT-GTGG
1 GTGGTGA
41332 GTGGTG
1 GTGGTG
41338 TGTGTAGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 5 0.14
7 32 0.86
ACGTcount: A:0.09, C:0.00, G:0.60, T:0.32
Consensus pattern (7 bp):
GTGGTGA
Left flanking sequence: Indices 40791 -- 41290
CCAATGAACCAGTGGGCGTGGGCACAGATGTCGTCCCACGCGCTGGGGTCGAGCGGGGGGCACTG
CGGGTCGAAGCCTCCGCGGAGCGGGAGCATCCACTCGCCGTGGGGCCGGCCCAGGCCCTGGGTGG
ACGCGGTGGTTGCGGTGGCGGTGGTCTTTTGTGATACGATCGTCAGGGTGCGGGCTAGCGGCGGG
GCCGACGCGGCCCAGTAGTCCTTGTCGTGCTCCCCGCTGGCGTAGCGGTGGTAGATGCTCATGGA
GAGGGCGGGGAACTACCGTGTGTGTGGAGCGACGGGTATCAGTGGCTATTTTAAGGGAAAAAGTG
CGTATTTACCCTGGGCCCGGTGGGTGGATGCTCGATGCAGATTGTTTATGTTTTGGCCGGATGGG
GACGACAACACGGAATGCAGGAAGGAGGGAAGGGAAGGAAGGGAAGGGAAGGGATGGAGAAAGGG
ATGAGAGAAAAAGATTAGGTGTGTGGGGGGAGGGTGTGGTGCGGT
Right flanking sequence: Indices 41338 -- 41837
TGTGTAGTTTGTGTGTGTAGTTTGTGTACGCTGGGTTGATCGTTTTACCTGGATATGCATAATTT
TACGTCGCGTCATCACGGTTGAGAAGGTAACCAAACGACCTGGTTACGGGTCAGGTGATGTGGGG
ATGAGGCTAGGGTGGAGAGAGAAGGAGAAGGAAGGTGAGTGTAGGAGAGGGAAGGAGAGGGAAGG
GAGGGAAGGGGACGGTGAGCGGGCAGTAGTGTGTGTAAAGGTGGAGGAATGAGTGCCATGGAGTC
GCGTGACCGCGTCAGGGCAACCCAAAACGGACTAAATGGTGGCCGTGGTGGCCATGTGTGTCCCA
ATCGGGTTGGCAAAGGGCACGCCTGACGATGGCGGACGAACCTAATGTGTGACCAATACGGACAG
CAACCGGTAAACAATAGAATGTGGAACAGAGGTAAACATGGGGAGGGGGGGTGGAGGGAGAGGGT
GAGGATGGAATAGACGGTAATTAGGTTGGGTGTAGCAGTGGGGAA
Found at i:41351 original size:13 final size:13
Alignment explanation
Indices: 41335--41364 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
41325 TGTGTGGGTG
41335 GTGTGTGTAGTTT
1 GTGTGTGTAGTTT
41348 GTGTGTGTAGTTT
1 GTGTGTGTAGTTT
41361 GTGT
1 GTGT
41365 ACGCTGGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.07, C:0.00, G:0.40, T:0.53
Consensus pattern (13 bp):
GTGTGTGTAGTTT
Left flanking sequence: Indices 40835 -- 41334
GGGGTCGAGCGGGGGGCACTGCGGGTCGAAGCCTCCGCGGAGCGGGAGCATCCACTCGCCGTGGG
GCCGGCCCAGGCCCTGGGTGGACGCGGTGGTTGCGGTGGCGGTGGTCTTTTGTGATACGATCGTC
AGGGTGCGGGCTAGCGGCGGGGCCGACGCGGCCCAGTAGTCCTTGTCGTGCTCCCCGCTGGCGTA
GCGGTGGTAGATGCTCATGGAGAGGGCGGGGAACTACCGTGTGTGTGGAGCGACGGGTATCAGTG
GCTATTTTAAGGGAAAAAGTGCGTATTTACCCTGGGCCCGGTGGGTGGATGCTCGATGCAGATTG
TTTATGTTTTGGCCGGATGGGGACGACAACACGGAATGCAGGAAGGAGGGAAGGGAAGGAAGGGA
AGGGAAGGGATGGAGAAAGGGATGAGAGAAAAAGATTAGGTGTGTGGGGGGAGGGTGTGGTGCGG
TGTGGTGAGTGGTGAGTGGTGAGTGGTGAGTGGTGTGTGTGGGTG
Right flanking sequence: Indices 41365 -- 41864
ACGCTGGGTTGATCGTTTTACCTGGATATGCATAATTTTACGTCGCGTCATCACGGTTGAGAAGG
TAACCAAACGACCTGGTTACGGGTCAGGTGATGTGGGGATGAGGCTAGGGTGGAGAGAGAAGGAG
AAGGAAGGTGAGTGTAGGAGAGGGAAGGAGAGGGAAGGGAGGGAAGGGGACGGTGAGCGGGCAGT
AGTGTGTGTAAAGGTGGAGGAATGAGTGCCATGGAGTCGCGTGACCGCGTCAGGGCAACCCAAAA
CGGACTAAATGGTGGCCGTGGTGGCCATGTGTGTCCCAATCGGGTTGGCAAAGGGCACGCCTGAC
GATGGCGGACGAACCTAATGTGTGACCAATACGGACAGCAACCGGTAAACAATAGAATGTGGAAC
AGAGGTAAACATGGGGAGGGGGGGTGGAGGGAGAGGGTGAGGATGGAATAGACGGTAATTAGGTT
GGGTGTAGCAGTGGGGAATTAGACGGGGGGGAGAGGAGGGTGGAG
Found at i:41501 original size:10 final size:10
Alignment explanation
Indices: 41481--41541 Score: 70
Period size: 10 Copynumber: 6.2 Consensus size: 10
41471 AGGCTAGGGT
*
41481 GGAGAGAGAA
1 GGAGAGGGAA
*
41491 GGAGAAGGAA
1 GGAGAGGGAA
* * *
41501 GGTGAGTGTA
1 GGAGAGGGAA
41511 GGAGAGGGAA
1 GGAGAGGGAA
41521 GGAGAGGGAA
1 GGAGAGGGAA
41531 GG-GAGGGAA
1 GGAGAGGGAA
41540 GG
1 GG
41542 GGACGGTGAG
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
9 9 0.21
10 33 0.79
ACGTcount: A:0.38, C:0.00, G:0.57, T:0.05
Consensus pattern (10 bp):
GGAGAGGGAA
Left flanking sequence: Indices 40981 -- 41480
GCGGGGCCGACGCGGCCCAGTAGTCCTTGTCGTGCTCCCCGCTGGCGTAGCGGTGGTAGATGCTC
ATGGAGAGGGCGGGGAACTACCGTGTGTGTGGAGCGACGGGTATCAGTGGCTATTTTAAGGGAAA
AAGTGCGTATTTACCCTGGGCCCGGTGGGTGGATGCTCGATGCAGATTGTTTATGTTTTGGCCGG
ATGGGGACGACAACACGGAATGCAGGAAGGAGGGAAGGGAAGGAAGGGAAGGGAAGGGATGGAGA
AAGGGATGAGAGAAAAAGATTAGGTGTGTGGGGGGAGGGTGTGGTGCGGTGTGGTGAGTGGTGAG
TGGTGAGTGGTGAGTGGTGTGTGTGGGTGGTGTGTGTAGTTTGTGTGTGTAGTTTGTGTACGCTG
GGTTGATCGTTTTACCTGGATATGCATAATTTTACGTCGCGTCATCACGGTTGAGAAGGTAACCA
AACGACCTGGTTACGGGTCAGGTGATGTGGGGATGAGGCTAGGGT
Right flanking sequence: Indices 41542 -- 42041
GGACGGTGAGCGGGCAGTAGTGTGTGTAAAGGTGGAGGAATGAGTGCCATGGAGTCGCGTGACCG
CGTCAGGGCAACCCAAAACGGACTAAATGGTGGCCGTGGTGGCCATGTGTGTCCCAATCGGGTTG
GCAAAGGGCACGCCTGACGATGGCGGACGAACCTAATGTGTGACCAATACGGACAGCAACCGGTA
AACAATAGAATGTGGAACAGAGGTAAACATGGGGAGGGGGGGTGGAGGGAGAGGGTGAGGATGGA
ATAGACGGTAATTAGGTTGGGTGTAGCAGTGGGGAATTAGACGGGGGGGAGAGGAGGGTGGAGAC
AAGGGTTTAGACGACAGTAGTGGATTACTTGGCAGGGGCCATAGAGTCGAGCCCGATCCACAATG
GACCCTGTCTGATTCACGCTGCGAACAGACATAATGCAAGGAGGCACGACATTGGAAGCTGGGGA
GGAGTAGATGAAAACATTGCTGGTTTCAATGGCAATCTGGGAGGG
Found at i:42251 original size:40 final size:40
Alignment explanation
Indices: 42142--42329 Score: 182
Period size: 41 Copynumber: 4.7 Consensus size: 40
42132 TTCAGTGCAA
* * ** *
42142 TGGAATTACA-GAAACATTCCCATGGTAAACCTATAAATGTC
1 TGGAATTA-ATGAAGCA-TCCCATGGTCAACCTATTTATATC
* * * * * *
42183 TGAAATTGATGAGGCAGCCCCATAGTCAACCTATTTATACC
1 TGGAATTAATGAAGCA-TCCCATGGTCAACCTATTTATATC
* * *
42224 TGGAATTATTGAAGCATCCCATGGTCAACCTATTAATGTC
1 TGGAATTAATGAAGCATCCCATGGTCAACCTATTTATATC
42264 TGG-ATTAATGAAGCATCCCATGGTCAACCTATTTATATC
1 TGGAATTAATGAAGCATCCCATGGTCAACCTATTTATATC
* *
42303 TGAAATTACTGAAGCATCCCCATGGTC
1 TGGAATTAATGAAGCAT-CCCATGGTC
42330 TATTTATGTC
Statistics
Matches: 118, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
39 35 0.30
40 35 0.30
41 48 0.41
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (40 bp):
TGGAATTAATGAAGCATCCCATGGTCAACCTATTTATATC
Left flanking sequence: Indices 41642 -- 42141
GTGGTGGCCATGTGTGTCCCAATCGGGTTGGCAAAGGGCACGCCTGACGATGGCGGACGAACCTA
ATGTGTGACCAATACGGACAGCAACCGGTAAACAATAGAATGTGGAACAGAGGTAAACATGGGGA
GGGGGGGTGGAGGGAGAGGGTGAGGATGGAATAGACGGTAATTAGGTTGGGTGTAGCAGTGGGGA
ATTAGACGGGGGGGAGAGGAGGGTGGAGACAAGGGTTTAGACGACAGTAGTGGATTACTTGGCAG
GGGCCATAGAGTCGAGCCCGATCCACAATGGACCCTGTCTGATTCACGCTGCGAACAGACATAAT
GCAAGGAGGCACGACATTGGAAGCTGGGGAGGAGTAGATGAAAACATTGCTGGTTTCAATGGCAA
TCTGGGAGGGAAGTAGGGATAAGGCAATTGTGAAAGAGGGTTATGGAGGTAGAGTTGTGGTAGAA
GCGGTATGTATGAAGACTTTACTTGTAGTATCGTATTCAGTGCAA
Right flanking sequence: Indices 42330 -- 42829
TATTTATGTCTGAAATTATGAACCAGGTATTGGTGTATAAAGTTAACCTTACGCACAAGCAGATG
AAGAACCACCAGGTTATCATGGGTTCCTAGACGACGAGATAATGAACTTGATTGGGCTGGTTTAA
AGAACAGATATTGCGCGTAGTGAAGGATTTAGGTCTATCTTGGCCATTGGGTTGGAAGCCTCGCC
ATTTCCTCGAGACTTGCTGCCACCATTGTTCTCCACACTAGCCGTGTCATTGTTTATCCTCACTG
TTGAAGTGATTTCCAGGTCAGTGGCTACCAGGTTATTAGTTGCTAGAGAAGGCTCTCCAGGTATT
GGGGTGCCAGCCATGGCTGAGAGTGCTAACTGTTTGCCACATAACCACTCATAGTCCAAATGTAG
CTCGTTGGCTCGCCTAACTCACGGTTCTGTAATATGTGTGTTGTAACTTTATAAACCAGTATGAT
CAATGTGTAGTAAGGTAGATAACAAGGCGTGTTTAGAAAGCAGGT
Found at i:42310 original size:79 final size:81
Alignment explanation
Indices: 42145--42329 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
42135 AGTGCAATGG
* * * * *
42145 AATTACAGAAACATTCCCATGGTAAACCTATAAATGTCTGAAATTGATGAGGCAGCCCCATAGTC
1 AATTACTGAAGCA-TCCCATGGTCAACCTATAAATGTCTGAAATTAATGAAGCAGCCCCATAGTC
*
42210 AACCTATTTATACCTGG
65 AACCTATTTATACCTGA
* * * * *
42227 AATTATTGAAGCATCCCATGGTCAACCTATTAATGTCTG-GATTAATGAAGCA-TCCCATGGTCA
1 AATTACTGAAGCATCCCATGGTCAACCTATAAATGTCTGAAATTAATGAAGCAGCCCCATAGTCA
*
42290 ACCTATTTATATCTGA
66 ACCTATTTATACCTGA
42306 AATTACTGAAGCATCCCCATGGTC
1 AATTACTGAAGCAT-CCCATGGTC
42330 TATTTATGTC
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 36 0.40
80 19 0.21
81 24 0.27
82 10 0.11
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (81 bp):
AATTACTGAAGCATCCCATGGTCAACCTATAAATGTCTGAAATTAATGAAGCAGCCCCATAGTCA
ACCTATTTATACCTGA
Left flanking sequence: Indices 41645 -- 42144
GTGGCCATGTGTGTCCCAATCGGGTTGGCAAAGGGCACGCCTGACGATGGCGGACGAACCTAATG
TGTGACCAATACGGACAGCAACCGGTAAACAATAGAATGTGGAACAGAGGTAAACATGGGGAGGG
GGGGTGGAGGGAGAGGGTGAGGATGGAATAGACGGTAATTAGGTTGGGTGTAGCAGTGGGGAATT
AGACGGGGGGGAGAGGAGGGTGGAGACAAGGGTTTAGACGACAGTAGTGGATTACTTGGCAGGGG
CCATAGAGTCGAGCCCGATCCACAATGGACCCTGTCTGATTCACGCTGCGAACAGACATAATGCA
AGGAGGCACGACATTGGAAGCTGGGGAGGAGTAGATGAAAACATTGCTGGTTTCAATGGCAATCT
GGGAGGGAAGTAGGGATAAGGCAATTGTGAAAGAGGGTTATGGAGGTAGAGTTGTGGTAGAAGCG
GTATGTATGAAGACTTTACTTGTAGTATCGTATTCAGTGCAATGG
Right flanking sequence: Indices 42330 -- 42829
TATTTATGTCTGAAATTATGAACCAGGTATTGGTGTATAAAGTTAACCTTACGCACAAGCAGATG
AAGAACCACCAGGTTATCATGGGTTCCTAGACGACGAGATAATGAACTTGATTGGGCTGGTTTAA
AGAACAGATATTGCGCGTAGTGAAGGATTTAGGTCTATCTTGGCCATTGGGTTGGAAGCCTCGCC
ATTTCCTCGAGACTTGCTGCCACCATTGTTCTCCACACTAGCCGTGTCATTGTTTATCCTCACTG
TTGAAGTGATTTCCAGGTCAGTGGCTACCAGGTTATTAGTTGCTAGAGAAGGCTCTCCAGGTATT
GGGGTGCCAGCCATGGCTGAGAGTGCTAACTGTTTGCCACATAACCACTCATAGTCCAAATGTAG
CTCGTTGGCTCGCCTAACTCACGGTTCTGTAATATGTGTGTTGTAACTTTATAAACCAGTATGAT
CAATGTGTAGTAAGGTAGATAACAAGGCGTGTTTAGAAAGCAGGT
Found at i:43063 original size:21 final size:21
Alignment explanation
Indices: 43039--43112 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
43029 TCTCCGTGTC
*
43039 CGTAGCCGTGCCCGCCGTGGT
1 CGTAGCCGTGCCCGCCGTGCT
* ** *
43060 CGTACCCGTGGTCGTACCCGCGCT
1 CGTAGCCGTGCCCG---CCGTGCT
*
43084 CGTAGCCGGGCCCGCCGTGCT
1 CGTAGCCGTGCCCGCCGTGCT
43105 CGTAGCCG
1 CGTAGCCG
43113 CGTCCGTACG
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
21 25 0.62
24 15 0.38
ACGTcount: A:0.07, C:0.41, G:0.35, T:0.18
Consensus pattern (21 bp):
CGTAGCCGTGCCCGCCGTGCT
Left flanking sequence: Indices 42539 -- 43038
TGCTGCCACCATTGTTCTCCACACTAGCCGTGTCATTGTTTATCCTCACTGTTGAAGTGATTTCC
AGGTCAGTGGCTACCAGGTTATTAGTTGCTAGAGAAGGCTCTCCAGGTATTGGGGTGCCAGCCAT
GGCTGAGAGTGCTAACTGTTTGCCACATAACCACTCATAGTCCAAATGTAGCTCGTTGGCTCGCC
TAACTCACGGTTCTGTAATATGTGTGTTGTAACTTTATAAACCAGTATGATCAATGTGTAGTAAG
GTAGATAACAAGGCGTGTTTAGAAAGCAGGTACATGGTTAAATAGAGAGCTTTGCCCCTTAACCG
CTGCCTGCGTACCAATTGATAGACACCAAGTGATAACAAACACGGCTAGTCACCTACAGGAAACG
AGACACGGGAGTCTATGCCACTCCATCACCTCCATCACCCCATCTATTGTCTATAAGTCTATGCT
AGTATCCCCACTCGCGCGGTCTCCCCGTCTGTTCCTCTCCGTGTC
Right flanking sequence: Indices 43113 -- 43612
CGTCCGTACGCCTGGTCTTGGTAGTACTCGCGTCCGCCCTGGTCGGGGCCCTGGCCAAAGCCCCG
GTACCCTCCGTTGTAGTCCGGAGGACCCTGGGGACCCTGCCCGTAGCCCTGGTAGCCTCCGTGAA
ACTCCTGGTAGCCACCGGGGCCGTCACGGCCATAGCCCGAGGGCGCACCGTAGCTCATGTCGCCA
CGGCCTTCGCCACGGCCGTCGGGACCGCCGTACCCGTGGTGCTCCCACTGCGGGGGCGCGTCGTG
GTCGTGCTTGAAGTGGTGCTCGATCTTGTTGGCGGCAATCGCCCCCAAGAGAGCGCCTCCGATCT
TGCCCAACGTGCCCCCGTTGCTCATCTTGTTGCCTGCGTAGCCTCCGACAGCGGCGCCGCTGATG
GTGGACAAGAGACCCCGCTCCTGCGGCGGGTGGTCGTCGTTAGCGTAGGGGTTGTGGTGGGGGTC
CATTGGTGGTGTTGCCGCGGTTGCTGGGCGTTTTATACCCGGTGG
Found at i:43070 original size:12 final size:12
Alignment explanation
Indices: 43053--43079 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
43043 GCCGTGCCCG
43053 CCGTGGTCGTAC
1 CCGTGGTCGTAC
43065 CCGTGGTCGTAC
1 CCGTGGTCGTAC
43077 CCG
1 CCG
43080 CGCTCGTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.37, G:0.33, T:0.22
Consensus pattern (12 bp):
CCGTGGTCGTAC
Left flanking sequence: Indices 42553 -- 43052
TTCTCCACACTAGCCGTGTCATTGTTTATCCTCACTGTTGAAGTGATTTCCAGGTCAGTGGCTAC
CAGGTTATTAGTTGCTAGAGAAGGCTCTCCAGGTATTGGGGTGCCAGCCATGGCTGAGAGTGCTA
ACTGTTTGCCACATAACCACTCATAGTCCAAATGTAGCTCGTTGGCTCGCCTAACTCACGGTTCT
GTAATATGTGTGTTGTAACTTTATAAACCAGTATGATCAATGTGTAGTAAGGTAGATAACAAGGC
GTGTTTAGAAAGCAGGTACATGGTTAAATAGAGAGCTTTGCCCCTTAACCGCTGCCTGCGTACCA
ATTGATAGACACCAAGTGATAACAAACACGGCTAGTCACCTACAGGAAACGAGACACGGGAGTCT
ATGCCACTCCATCACCTCCATCACCCCATCTATTGTCTATAAGTCTATGCTAGTATCCCCACTCG
CGCGGTCTCCCCGTCTGTTCCTCTCCGTGTCCGTAGCCGTGCCCG
Right flanking sequence: Indices 43080 -- 43579
CGCTCGTAGCCGGGCCCGCCGTGCTCGTAGCCGCGTCCGTACGCCTGGTCTTGGTAGTACTCGCG
TCCGCCCTGGTCGGGGCCCTGGCCAAAGCCCCGGTACCCTCCGTTGTAGTCCGGAGGACCCTGGG
GACCCTGCCCGTAGCCCTGGTAGCCTCCGTGAAACTCCTGGTAGCCACCGGGGCCGTCACGGCCA
TAGCCCGAGGGCGCACCGTAGCTCATGTCGCCACGGCCTTCGCCACGGCCGTCGGGACCGCCGTA
CCCGTGGTGCTCCCACTGCGGGGGCGCGTCGTGGTCGTGCTTGAAGTGGTGCTCGATCTTGTTGG
CGGCAATCGCCCCCAAGAGAGCGCCTCCGATCTTGCCCAACGTGCCCCCGTTGCTCATCTTGTTG
CCTGCGTAGCCTCCGACAGCGGCGCCGCTGATGGTGGACAAGAGACCCCGCTCCTGCGGCGGGTG
GTCGTCGTTAGCGTAGGGGTTGTGGTGGGGGTCCATTGGTGGTGT
Found at i:43883 original size:22 final size:21
Alignment explanation
Indices: 43834--43899 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
43824 TGAACTACCA
* *
43834 CTTAGCCATACCGTTGAACTGCCA
1 CTTAGCCA-CCCG-TGAAC-GCCC
43858 CTTAGCCACCCGTGAATCGCCC
1 CTTAGCCACCCGTGAA-CGCCC
*
43880 CTTAGCCACCTGTGAACGCC
1 CTTAGCCACCCGTGAACGCC
43900 ACAGCCCCGT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
21 4 0.11
22 22 0.58
23 4 0.11
24 8 0.21
ACGTcount: A:0.21, C:0.39, G:0.18, T:0.21
Consensus pattern (21 bp):
CTTAGCCACCCGTGAACGCCC
Left flanking sequence: Indices 43334 -- 43833
GCCGTACCCGTGGTGCTCCCACTGCGGGGGCGCGTCGTGGTCGTGCTTGAAGTGGTGCTCGATCT
TGTTGGCGGCAATCGCCCCCAAGAGAGCGCCTCCGATCTTGCCCAACGTGCCCCCGTTGCTCATC
TTGTTGCCTGCGTAGCCTCCGACAGCGGCGCCGCTGATGGTGGACAAGAGACCCCGCTCCTGCGG
CGGGTGGTCGTCGTTAGCGTAGGGGTTGTGGTGGGGGTCCATTGGTGGTGTTGCCGCGGTTGCTG
GGCGTTTTATACCCGGTGGAGGTGGCTGAGTGGGTGGCAGCTGGACCCGGTGGTGTCACGGCTTA
GCAACAAGCCCTGGTAAGCCCCAAAGGCTGTGCCGCGGGGCGTAGAACACAGCCTGGAGGAGAGA
TATGGCTGTGCTATGGTGTTTAACTGGTCGTTGGTAACAGTCAGTGAAGTTTACATTAAACCGTG
ATTCAGCCACATGATGTTGTATGTCTGAACACTGTTGAACTACCA
Right flanking sequence: Indices 43900 -- 44399
ACAGCCCCGTGAATTGCCACAGCCACCCGTAAATCACCCGTTGAGCCAGTCAACGGGCTCTACAA
CGCCTACGACGTGATCCAACCTTATGGACCGAGGTTGGACCACCTACGGATCGTTAACCAGGACT
CCAACCAGGAATGTGTACAATGGACCGGCCATCAACACCGCTGAGCTGCCCGTTCAGCCCCCGAG
TGGTCTACCTGCTGTCATGCTATGCTCCGCTACTGTCCACCAGCTTCTCAGCACCTACCCGCCAC
CACCAAAAGCTTGCAATTTATCCAGCTTCGTAGCCTCGTTCTATCAACATTTTATGCTCATGCCA
AGCTTCTTTCACTCTAGCTTCTTCCTTTTAGCTTCTTCATTCTACCAACAGCTTCCTTTCGTCCT
ATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTAAGGTCAGCCTATGCTCAAGGTCA
GCCTATGCTCGTGCTCAGCTATGCTCATGCCCAGCTTATGCTCAT
Found at i:44346 original size:16 final size:17
Alignment explanation
Indices: 44325--44422 Score: 85
Period size: 17 Copynumber: 5.9 Consensus size: 17
44315 ATCAGCAGTT
44325 TATGCT-AAGGTCAGCC
1 TATGCTCAAGGTCAGCC
44341 TATGCTCAAGGTCAGCC
1 TATGCTCAAGGTCAGCC
** *
44358 TATGCTCGTGCTCAG-C
1 TATGCTCAAGGTCAGCC
* ** *
44374 TATGCTCATGCCCAGCT
1 TATGCTCAAGGTCAGCC
* *
44391 TATGCTCATGCTCAG-C
1 TATGCTCAAGGTCAGCC
*
44407 TATGCTCATGGTCAGC
1 TATGCTCAAGGTCAGC
44423 TTATTCTCAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
16 34 0.49
17 36 0.51
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (17 bp):
TATGCTCAAGGTCAGCC
Left flanking sequence: Indices 43825 -- 44324
GAACTACCACTTAGCCATACCGTTGAACTGCCACTTAGCCACCCGTGAATCGCCCCTTAGCCACC
TGTGAACGCCACAGCCCCGTGAATTGCCACAGCCACCCGTAAATCACCCGTTGAGCCAGTCAACG
GGCTCTACAACGCCTACGACGTGATCCAACCTTATGGACCGAGGTTGGACCACCTACGGATCGTT
AACCAGGACTCCAACCAGGAATGTGTACAATGGACCGGCCATCAACACCGCTGAGCTGCCCGTTC
AGCCCCCGAGTGGTCTACCTGCTGTCATGCTATGCTCCGCTACTGTCCACCAGCTTCTCAGCACC
TACCCGCCACCACCAAAAGCTTGCAATTTATCCAGCTTCGTAGCCTCGTTCTATCAACATTTTAT
GCTCATGCCAAGCTTCTTTCACTCTAGCTTCTTCCTTTTAGCTTCTTCATTCTACCAACAGCTTC
CTTTCGTCCTATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTT
Right flanking sequence: Indices 44423 -- 44922
TTATTCTCATTTCCAGCGTATGCTCATACTTAGCTTCTTTCAATCTACCAACAGCTTCTCAACAG
CGTCCTATCGCTATACCAACAGTTTTCTAACAGCTCTACCAACAGCGTCCTATGGTTCTACCAAC
AGCTCCGAGCCTCGGTCTCTGCATCAACAGCTTCTGCTCATGCTTAGCTTCTGTCATTCTCAGCT
TCTTTCCTATTCTGCTTGTCATTCTACCAACAGCGTCCTATCGTCCTATCAGCACTATCAACTGC
TTTCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCA
TCTTCATTCTACCAATAGCGTCTTACAGCCCTACGAAAAGCTTCCTAGCTTCGCTCCCATCACCA
ACAGCTTTAGTCAATGCTCAGCTCATGCTCATGCTTAGCTTCTTTCACTCTTAGCTTCTTTCATT
TTCAGCTTCTCACTCTACCAACAGCTTCTTAACAGCGTTTTCAGC
Found at i:44353 original size:17 final size:17
Alignment explanation
Indices: 44335--44432 Score: 110
Period size: 17 Copynumber: 5.9 Consensus size: 17
44325 TATGCTAAGG
* *
44335 TCAGCCTATGCTCAAGG
1 TCAGCCTATGCTCATGC
*
44352 TCAGCCTATGCTCGTGC
1 TCAGCCTATGCTCATGC
44369 TCAG-CTATGCTCATGC
1 TCAGCCTATGCTCATGC
* *
44385 CCAGCTTATGCTCATGC
1 TCAGCCTATGCTCATGC
*
44402 TCAG-CTATGCTCATGG
1 TCAGCCTATGCTCATGC
* *
44418 TCAGCTTATTCTCAT
1 TCAGCCTATGCTCAT
44433 TTCCAGCGTA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
16 28 0.41
17 40 0.59
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.32
Consensus pattern (17 bp):
TCAGCCTATGCTCATGC
Left flanking sequence: Indices 43835 -- 44334
TTAGCCATACCGTTGAACTGCCACTTAGCCACCCGTGAATCGCCCCTTAGCCACCTGTGAACGCC
ACAGCCCCGTGAATTGCCACAGCCACCCGTAAATCACCCGTTGAGCCAGTCAACGGGCTCTACAA
CGCCTACGACGTGATCCAACCTTATGGACCGAGGTTGGACCACCTACGGATCGTTAACCAGGACT
CCAACCAGGAATGTGTACAATGGACCGGCCATCAACACCGCTGAGCTGCCCGTTCAGCCCCCGAG
TGGTCTACCTGCTGTCATGCTATGCTCCGCTACTGTCCACCAGCTTCTCAGCACCTACCCGCCAC
CACCAAAAGCTTGCAATTTATCCAGCTTCGTAGCCTCGTTCTATCAACATTTTATGCTCATGCCA
AGCTTCTTTCACTCTAGCTTCTTCCTTTTAGCTTCTTCATTCTACCAACAGCTTCCTTTCGTCCT
ATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTAAGG
Right flanking sequence: Indices 44433 -- 44932
TTCCAGCGTATGCTCATACTTAGCTTCTTTCAATCTACCAACAGCTTCTCAACAGCGTCCTATCG
CTATACCAACAGTTTTCTAACAGCTCTACCAACAGCGTCCTATGGTTCTACCAACAGCTCCGAGC
CTCGGTCTCTGCATCAACAGCTTCTGCTCATGCTTAGCTTCTGTCATTCTCAGCTTCTTTCCTAT
TCTGCTTGTCATTCTACCAACAGCGTCCTATCGTCCTATCAGCACTATCAACTGCTTTCTCTACC
AACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCATCTTCATTCT
ACCAATAGCGTCTTACAGCCCTACGAAAAGCTTCCTAGCTTCGCTCCCATCACCAACAGCTTTAG
TCAATGCTCAGCTCATGCTCATGCTTAGCTTCTTTCACTCTTAGCTTCTTTCATTTTCAGCTTCT
CACTCTACCAACAGCTTCTTAACAGCGTTTTCAGCTCTACAAAAA
Found at i:44377 original size:33 final size:33
Alignment explanation
Indices: 44335--44449 Score: 124
Period size: 33 Copynumber: 3.4 Consensus size: 33
44325 TATGCTAAGG
* *
44335 TCAGCCTATGCTCAAGGTCAGCCTATGCTCGTGC
1 TCAG-CTATGCTCATGGTCAGCCTATGCTCATGC
** *
44369 TCAGCTATGCTCATGCCCAGCTTATGCTCATGC
1 TCAGCTATGCTCATGGTCAGCCTATGCTCATGC
* * *
44402 TCAGCTATGCTCATGGTCAGCTTATTCTCAT-T
1 TCAGCTATGCTCATGGTCAGCCTATGCTCATGC
44434 TCCAGCGTATGCTCAT
1 T-CAGC-TATGCTCAT
44450 ACTTAGCTTC
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.01
33 56 0.80
34 13 0.19
ACGTcount: A:0.18, C:0.30, G:0.19, T:0.32
Consensus pattern (33 bp):
TCAGCTATGCTCATGGTCAGCCTATGCTCATGC
Left flanking sequence: Indices 43835 -- 44334
TTAGCCATACCGTTGAACTGCCACTTAGCCACCCGTGAATCGCCCCTTAGCCACCTGTGAACGCC
ACAGCCCCGTGAATTGCCACAGCCACCCGTAAATCACCCGTTGAGCCAGTCAACGGGCTCTACAA
CGCCTACGACGTGATCCAACCTTATGGACCGAGGTTGGACCACCTACGGATCGTTAACCAGGACT
CCAACCAGGAATGTGTACAATGGACCGGCCATCAACACCGCTGAGCTGCCCGTTCAGCCCCCGAG
TGGTCTACCTGCTGTCATGCTATGCTCCGCTACTGTCCACCAGCTTCTCAGCACCTACCCGCCAC
CACCAAAAGCTTGCAATTTATCCAGCTTCGTAGCCTCGTTCTATCAACATTTTATGCTCATGCCA
AGCTTCTTTCACTCTAGCTTCTTCCTTTTAGCTTCTTCATTCTACCAACAGCTTCCTTTCGTCCT
ATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTAAGG
Right flanking sequence: Indices 44450 -- 44949
ACTTAGCTTCTTTCAATCTACCAACAGCTTCTCAACAGCGTCCTATCGCTATACCAACAGTTTTC
TAACAGCTCTACCAACAGCGTCCTATGGTTCTACCAACAGCTCCGAGCCTCGGTCTCTGCATCAA
CAGCTTCTGCTCATGCTTAGCTTCTGTCATTCTCAGCTTCTTTCCTATTCTGCTTGTCATTCTAC
CAACAGCGTCCTATCGTCCTATCAGCACTATCAACTGCTTTCTCTACCAACAGCTTATGCTCATG
CTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCATCTTCATTCTACCAATAGCGTCTTACA
GCCCTACGAAAAGCTTCCTAGCTTCGCTCCCATCACCAACAGCTTTAGTCAATGCTCAGCTCATG
CTCATGCTTAGCTTCTTTCACTCTTAGCTTCTTTCATTTTCAGCTTCTCACTCTACCAACAGCTT
CTTAACAGCGTTTTCAGCTCTACAAAAAGCTTCTCAGCCTCGCTC
Found at i:44384 original size:6 final size:6
Alignment explanation
Indices: 44359--44416 Score: 54
Period size: 6 Copynumber: 10.5 Consensus size: 6
44349 AGGTCAGCCT
* * *
44359 ATGCTC GTGCTC A-GCT- ATGCTC ATGCCC A-GCTT ATGCTC ATGCTC
1 ATGCTC ATGCTC ATGCTC ATGCTC ATGCTC ATGCTC ATGCTC ATGCTC
44404 A-GCT- ATGCTC ATG
1 ATGCTC ATGCTC ATG
44417 GTCAGCTTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
4 2 0.05
5 15 0.37
6 24 0.59
ACGTcount: A:0.17, C:0.31, G:0.21, T:0.31
Consensus pattern (6 bp):
ATGCTC
Left flanking sequence: Indices 43859 -- 44358
TTAGCCACCCGTGAATCGCCCCTTAGCCACCTGTGAACGCCACAGCCCCGTGAATTGCCACAGCC
ACCCGTAAATCACCCGTTGAGCCAGTCAACGGGCTCTACAACGCCTACGACGTGATCCAACCTTA
TGGACCGAGGTTGGACCACCTACGGATCGTTAACCAGGACTCCAACCAGGAATGTGTACAATGGA
CCGGCCATCAACACCGCTGAGCTGCCCGTTCAGCCCCCGAGTGGTCTACCTGCTGTCATGCTATG
CTCCGCTACTGTCCACCAGCTTCTCAGCACCTACCCGCCACCACCAAAAGCTTGCAATTTATCCA
GCTTCGTAGCCTCGTTCTATCAACATTTTATGCTCATGCCAAGCTTCTTTCACTCTAGCTTCTTC
CTTTTAGCTTCTTCATTCTACCAACAGCTTCCTTTCGTCCTATCAACAGCCTAAGCCTCGTTCTC
TATCAGCAGTTTATGCTAAGGTCAGCCTATGCTCAAGGTCAGCCT
Right flanking sequence: Indices 44417 -- 44916
GTCAGCTTATTCTCATTTCCAGCGTATGCTCATACTTAGCTTCTTTCAATCTACCAACAGCTTCT
CAACAGCGTCCTATCGCTATACCAACAGTTTTCTAACAGCTCTACCAACAGCGTCCTATGGTTCT
ACCAACAGCTCCGAGCCTCGGTCTCTGCATCAACAGCTTCTGCTCATGCTTAGCTTCTGTCATTC
TCAGCTTCTTTCCTATTCTGCTTGTCATTCTACCAACAGCGTCCTATCGTCCTATCAGCACTATC
AACTGCTTTCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATT
TCAGCATCTTCATTCTACCAATAGCGTCTTACAGCCCTACGAAAAGCTTCCTAGCTTCGCTCCCA
TCACCAACAGCTTTAGTCAATGCTCAGCTCATGCTCATGCTTAGCTTCTTTCACTCTTAGCTTCT
TTCATTTTCAGCTTCTCACTCTACCAACAGCTTCTTAACAGCGTT
Found at i:44449 original size:50 final size:50
Alignment explanation
Indices: 44336--44449 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 50
44326 ATGCTAAGGT
* * *
44336 CAGCCTATGCTCAAGGTCAGCCTATGCTCGTGCTCAGCTATGCTCATGCC
1 CAGCCTATGCTCATGCTCAGCCTATGCTCATGCTCAGCTATGCTCATGCC
* * * **
44386 CAGCTTATGCTCATGCTCAG-CTATGCTCATGGTCAGCTTATTCTCATTTC
1 CAGCCTATGCTCATGCTCAGCCTATGCTCATGCTCAGC-TATGCTCATGCC
*
44436 CAGCGTATGCTCAT
1 CAGCCTATGCTCAT
44450 ACTTAGCTTC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 15 0.28
50 39 0.72
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.32
Consensus pattern (50 bp):
CAGCCTATGCTCATGCTCAGCCTATGCTCATGCTCAGCTATGCTCATGCC
Left flanking sequence: Indices 43836 -- 44335
TAGCCATACCGTTGAACTGCCACTTAGCCACCCGTGAATCGCCCCTTAGCCACCTGTGAACGCCA
CAGCCCCGTGAATTGCCACAGCCACCCGTAAATCACCCGTTGAGCCAGTCAACGGGCTCTACAAC
GCCTACGACGTGATCCAACCTTATGGACCGAGGTTGGACCACCTACGGATCGTTAACCAGGACTC
CAACCAGGAATGTGTACAATGGACCGGCCATCAACACCGCTGAGCTGCCCGTTCAGCCCCCGAGT
GGTCTACCTGCTGTCATGCTATGCTCCGCTACTGTCCACCAGCTTCTCAGCACCTACCCGCCACC
ACCAAAAGCTTGCAATTTATCCAGCTTCGTAGCCTCGTTCTATCAACATTTTATGCTCATGCCAA
GCTTCTTTCACTCTAGCTTCTTCCTTTTAGCTTCTTCATTCTACCAACAGCTTCCTTTCGTCCTA
TCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTAAGGT
Right flanking sequence: Indices 44450 -- 44949
ACTTAGCTTCTTTCAATCTACCAACAGCTTCTCAACAGCGTCCTATCGCTATACCAACAGTTTTC
TAACAGCTCTACCAACAGCGTCCTATGGTTCTACCAACAGCTCCGAGCCTCGGTCTCTGCATCAA
CAGCTTCTGCTCATGCTTAGCTTCTGTCATTCTCAGCTTCTTTCCTATTCTGCTTGTCATTCTAC
CAACAGCGTCCTATCGTCCTATCAGCACTATCAACTGCTTTCTCTACCAACAGCTTATGCTCATG
CTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCATCTTCATTCTACCAATAGCGTCTTACA
GCCCTACGAAAAGCTTCCTAGCTTCGCTCCCATCACCAACAGCTTTAGTCAATGCTCAGCTCATG
CTCATGCTTAGCTTCTTTCACTCTTAGCTTCTTTCATTTTCAGCTTCTCACTCTACCAACAGCTT
CTTAACAGCGTTTTCAGCTCTACAAAAAGCTTCTCAGCCTCGCTC
Found at i:44617 original size:16 final size:17
Alignment explanation
Indices: 44580--44620 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
44570 TCTGCATCAA
44580 CAGCTTCTGCTCATGCT
1 CAGCTTCTGCTCATGCT
* *
44597 TAGCTTCTG-TCATTCT
1 CAGCTTCTGCTCATGCT
44613 CAGCTTCT
1 CAGCTTCT
44621 TTCCTATTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.12, C:0.32, G:0.15, T:0.41
Consensus pattern (17 bp):
CAGCTTCTGCTCATGCT
Left flanking sequence: Indices 44080 -- 44579
CGTTCAGCCCCCGAGTGGTCTACCTGCTGTCATGCTATGCTCCGCTACTGTCCACCAGCTTCTCA
GCACCTACCCGCCACCACCAAAAGCTTGCAATTTATCCAGCTTCGTAGCCTCGTTCTATCAACAT
TTTATGCTCATGCCAAGCTTCTTTCACTCTAGCTTCTTCCTTTTAGCTTCTTCATTCTACCAACA
GCTTCCTTTCGTCCTATCAACAGCCTAAGCCTCGTTCTCTATCAGCAGTTTATGCTAAGGTCAGC
CTATGCTCAAGGTCAGCCTATGCTCGTGCTCAGCTATGCTCATGCCCAGCTTATGCTCATGCTCA
GCTATGCTCATGGTCAGCTTATTCTCATTTCCAGCGTATGCTCATACTTAGCTTCTTTCAATCTA
CCAACAGCTTCTCAACAGCGTCCTATCGCTATACCAACAGTTTTCTAACAGCTCTACCAACAGCG
TCCTATGGTTCTACCAACAGCTCCGAGCCTCGGTCTCTGCATCAA
Right flanking sequence: Indices 44621 -- 45120
TTCCTATTCTGCTTGTCATTCTACCAACAGCGTCCTATCGTCCTATCAGCACTATCAACTGCTTT
CTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCATCT
TCATTCTACCAATAGCGTCTTACAGCCCTACGAAAAGCTTCCTAGCTTCGCTCCCATCACCAACA
GCTTTAGTCAATGCTCAGCTCATGCTCATGCTTAGCTTCTTTCACTCTTAGCTTCTTTCATTTTC
AGCTTCTCACTCTACCAACAGCTTCTTAACAGCGTTTTCAGCTCTACAAAAAGCTTCTCAGCCTC
GCTCTCCATCAACACCGTATGCCCATGCTTAACTCTTTCAGCTTCTTTCATTCAGCTTTCATTCT
ACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTAGCTTCTTTCATTCAGCTTTCATTCTAC
CAACAGCTCCTATCGCTTTTTCAATCTATCATCAGCACTACCAAC
Found at i:45065 original size:14 final size:15
Alignment explanation
Indices: 45032--45066 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
45022 ATGCTCATAC
45032 TCAGCTTCTTTCACT
1 TCAGCTTCTTTCACT
45047 T-AGCTTCTTTCA-T
1 TCAGCTTCTTTCACT
45060 TCAGCTT
1 TCAGCTT
45067 TCATTCTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 16 0.84
15 1 0.05
ACGTcount: A:0.14, C:0.29, G:0.09, T:0.49
Consensus pattern (15 bp):
TCAGCTTCTTTCACT
Left flanking sequence: Indices 44532 -- 45031
GCGTCCTATGGTTCTACCAACAGCTCCGAGCCTCGGTCTCTGCATCAACAGCTTCTGCTCATGCT
TAGCTTCTGTCATTCTCAGCTTCTTTCCTATTCTGCTTGTCATTCTACCAACAGCGTCCTATCGT
CCTATCAGCACTATCAACTGCTTTCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATC
TCAGCTTCTTTCATTTCAGCATCTTCATTCTACCAATAGCGTCTTACAGCCCTACGAAAAGCTTC
CTAGCTTCGCTCCCATCACCAACAGCTTTAGTCAATGCTCAGCTCATGCTCATGCTTAGCTTCTT
TCACTCTTAGCTTCTTTCATTTTCAGCTTCTCACTCTACCAACAGCTTCTTAACAGCGTTTTCAG
CTCTACAAAAAGCTTCTCAGCCTCGCTCTCCATCAACACCGTATGCCCATGCTTAACTCTTTCAG
CTTCTTTCATTCAGCTTTCATTCTACCAACAGCTTATGCTCATAC
Right flanking sequence: Indices 45067 -- 45566
TCATTCTACCAACAGCTCCTATCGCTTTTTCAATCTATCATCAGCACTACCAACAGCTTCTACCA
ACAGCTCAGCTTCTACCAGCTTCTCAGCACTACCAACAGCCTCGTAACAGCTCTACCATCGTCTC
AGCACTACCATCGTCTCAGCGTCCATCACCCGTGGCGTCATCAACACAGCTCTTATTCGTCTATG
TGTCTATTTCACAGCGTCTCCGGCTCCACCGCGCCCGCCTCCGCCGCAGGCGTCTCCTCCATCTT
ATCCTCGGCTGGCGTCTCCATGGGCGTCTCCATCTTGTCCTCGGCTGGCGTCTCCATCGGCGTCT
CCATAGGCGTCTCCTCCATCTCCCCCATCTCCGCCACAGGCGTCCCGGCCACGGGCGTGCCCCGC
ATCAGCGCGTCCACGTCGCCGCGGCTGGCGTAAAGAATCAGCAACTGGCGCCCGCCGTAGTTGTA
CCCGTCCAAGTTCGCAATGGCCGTGGCCGCAAACTCCCCCACCTC
Found at i:45131 original size:13 final size:13
Alignment explanation
Indices: 45113--45137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45103 ATCATCAGCA
45113 CTACCAACAGCTT
1 CTACCAACAGCTT
45126 CTACCAACAGCT
1 CTACCAACAGCT
45138 CAGCTTCTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.40, G:0.08, T:0.20
Consensus pattern (13 bp):
CTACCAACAGCTT
Left flanking sequence: Indices 44613 -- 45112
CAGCTTCTTTCCTATTCTGCTTGTCATTCTACCAACAGCGTCCTATCGTCCTATCAGCACTATCA
ACTGCTTTCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTT
CAGCATCTTCATTCTACCAATAGCGTCTTACAGCCCTACGAAAAGCTTCCTAGCTTCGCTCCCAT
CACCAACAGCTTTAGTCAATGCTCAGCTCATGCTCATGCTTAGCTTCTTTCACTCTTAGCTTCTT
TCATTTTCAGCTTCTCACTCTACCAACAGCTTCTTAACAGCGTTTTCAGCTCTACAAAAAGCTTC
TCAGCCTCGCTCTCCATCAACACCGTATGCCCATGCTTAACTCTTTCAGCTTCTTTCATTCAGCT
TTCATTCTACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTAGCTTCTTTCATTCAGCTTT
CATTCTACCAACAGCTCCTATCGCTTTTTCAATCTATCATCAGCA
Right flanking sequence: Indices 45138 -- 45637
CAGCTTCTACCAGCTTCTCAGCACTACCAACAGCCTCGTAACAGCTCTACCATCGTCTCAGCACT
ACCATCGTCTCAGCGTCCATCACCCGTGGCGTCATCAACACAGCTCTTATTCGTCTATGTGTCTA
TTTCACAGCGTCTCCGGCTCCACCGCGCCCGCCTCCGCCGCAGGCGTCTCCTCCATCTTATCCTC
GGCTGGCGTCTCCATGGGCGTCTCCATCTTGTCCTCGGCTGGCGTCTCCATCGGCGTCTCCATAG
GCGTCTCCTCCATCTCCCCCATCTCCGCCACAGGCGTCCCGGCCACGGGCGTGCCCCGCATCAGC
GCGTCCACGTCGCCGCGGCTGGCGTAAAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCGTC
CAAGTTCGCAATGGCCGTGGCCGCAAACTCCCCCACCTCAAACTGCACCACCGCACACCCCAGCG
GCCGCCCGTCGCCCAGGTACTGGAGCTCGGCCCGCGTCACCCGCC
Found at i:45143 original size:18 final size:18
Alignment explanation
Indices: 45120--45171 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
45110 GCACTACCAA
45120 CAGCTTCTACCAACAGCT
1 CAGCTTCTACCAACAGCT
* **
45138 CAGCTTCTACCAGCTTCT
1 CAGCTTCTACCAACAGCT
*
45156 CAGC-ACTACCAACAGC
1 CAGCTTCTACCAACAGC
45172 CTCGTAACAG
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.27, C:0.40, G:0.12, T:0.21
Consensus pattern (18 bp):
CAGCTTCTACCAACAGCT
Left flanking sequence: Indices 44620 -- 45119
TTTCCTATTCTGCTTGTCATTCTACCAACAGCGTCCTATCGTCCTATCAGCACTATCAACTGCTT
TCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTCAGCATC
TTCATTCTACCAATAGCGTCTTACAGCCCTACGAAAAGCTTCCTAGCTTCGCTCCCATCACCAAC
AGCTTTAGTCAATGCTCAGCTCATGCTCATGCTTAGCTTCTTTCACTCTTAGCTTCTTTCATTTT
CAGCTTCTCACTCTACCAACAGCTTCTTAACAGCGTTTTCAGCTCTACAAAAAGCTTCTCAGCCT
CGCTCTCCATCAACACCGTATGCCCATGCTTAACTCTTTCAGCTTCTTTCATTCAGCTTTCATTC
TACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTAGCTTCTTTCATTCAGCTTTCATTCTA
CCAACAGCTCCTATCGCTTTTTCAATCTATCATCAGCACTACCAA
Right flanking sequence: Indices 45172 -- 45671
CTCGTAACAGCTCTACCATCGTCTCAGCACTACCATCGTCTCAGCGTCCATCACCCGTGGCGTCA
TCAACACAGCTCTTATTCGTCTATGTGTCTATTTCACAGCGTCTCCGGCTCCACCGCGCCCGCCT
CCGCCGCAGGCGTCTCCTCCATCTTATCCTCGGCTGGCGTCTCCATGGGCGTCTCCATCTTGTCC
TCGGCTGGCGTCTCCATCGGCGTCTCCATAGGCGTCTCCTCCATCTCCCCCATCTCCGCCACAGG
CGTCCCGGCCACGGGCGTGCCCCGCATCAGCGCGTCCACGTCGCCGCGGCTGGCGTAAAGAATCA
GCAACTGGCGCCCGCCGTAGTTGTACCCGTCCAAGTTCGCAATGGCCGTGGCCGCAAACTCCCCC
ACCTCAAACTGCACCACCGCACACCCCAGCGGCCGCCCGTCGCCCAGGTACTGGAGCTCGGCCCG
CGTCACCCGCCCCACGGTCTCAAACAAGTCAAACAAGTCCTCCTG
Found at i:45199 original size:17 final size:17
Alignment explanation
Indices: 45179--45216 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
45169 AGCCTCGTAA
*
45179 CAGCTCTACCATCGTCT
1 CAGCACTACCATCGTCT
45196 CAGCACTACCATCGTCT
1 CAGCACTACCATCGTCT
45213 CAGC
1 CAGC
45217 GTCCATCACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.42, G:0.13, T:0.24
Consensus pattern (17 bp):
CAGCACTACCATCGTCT
Left flanking sequence: Indices 44679 -- 45178
CTGCTTTCTCTACCAACAGCTTATGCTCATGCTTGGTGTCTGTCAATCTCAGCTTCTTTCATTTC
AGCATCTTCATTCTACCAATAGCGTCTTACAGCCCTACGAAAAGCTTCCTAGCTTCGCTCCCATC
ACCAACAGCTTTAGTCAATGCTCAGCTCATGCTCATGCTTAGCTTCTTTCACTCTTAGCTTCTTT
CATTTTCAGCTTCTCACTCTACCAACAGCTTCTTAACAGCGTTTTCAGCTCTACAAAAAGCTTCT
CAGCCTCGCTCTCCATCAACACCGTATGCCCATGCTTAACTCTTTCAGCTTCTTTCATTCAGCTT
TCATTCTACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTAGCTTCTTTCATTCAGCTTTC
ATTCTACCAACAGCTCCTATCGCTTTTTCAATCTATCATCAGCACTACCAACAGCTTCTACCAAC
AGCTCAGCTTCTACCAGCTTCTCAGCACTACCAACAGCCTCGTAA
Right flanking sequence: Indices 45217 -- 45716
GTCCATCACCCGTGGCGTCATCAACACAGCTCTTATTCGTCTATGTGTCTATTTCACAGCGTCTC
CGGCTCCACCGCGCCCGCCTCCGCCGCAGGCGTCTCCTCCATCTTATCCTCGGCTGGCGTCTCCA
TGGGCGTCTCCATCTTGTCCTCGGCTGGCGTCTCCATCGGCGTCTCCATAGGCGTCTCCTCCATC
TCCCCCATCTCCGCCACAGGCGTCCCGGCCACGGGCGTGCCCCGCATCAGCGCGTCCACGTCGCC
GCGGCTGGCGTAAAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCGTCCAAGTTCGCAATGG
CCGTGGCCGCAAACTCCCCCACCTCAAACTGCACCACCGCACACCCCAGCGGCCGCCCGTCGCCC
AGGTACTGGAGCTCGGCCCGCGTCACCCGCCCCACGGTCTCAAACAAGTCAAACAAGTCCTCCTG
CGACGTGACAAACGGCATGTTGGCCACGTACACGGTGTCGGACGC
Found at i:45362 original size:36 final size:36
Alignment explanation
Indices: 45318--45395 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
45308 CAGGCGTCTC
*
45318 CTCCATCTTATCCTCGGCTGGCGTCTCCATGGGCGT
1 CTCCATCTTATCCTCGGCTGGCGTCTCCATCGGCGT
*
45354 CTCCATCTTGTCCTCGGCTGGCGTCTCCATCGGCGT
1 CTCCATCTTATCCTCGGCTGGCGTCTCCATCGGCGT
45390 CTCCAT
1 CTCCAT
45396 AGGCGTCTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.08, C:0.38, G:0.23, T:0.31
Consensus pattern (36 bp):
CTCCATCTTATCCTCGGCTGGCGTCTCCATCGGCGT
Left flanking sequence: Indices 44818 -- 45317
TTTAGTCAATGCTCAGCTCATGCTCATGCTTAGCTTCTTTCACTCTTAGCTTCTTTCATTTTCAG
CTTCTCACTCTACCAACAGCTTCTTAACAGCGTTTTCAGCTCTACAAAAAGCTTCTCAGCCTCGC
TCTCCATCAACACCGTATGCCCATGCTTAACTCTTTCAGCTTCTTTCATTCAGCTTTCATTCTAC
CAACAGCTTATGCTCATACTCAGCTTCTTTCACTTAGCTTCTTTCATTCAGCTTTCATTCTACCA
ACAGCTCCTATCGCTTTTTCAATCTATCATCAGCACTACCAACAGCTTCTACCAACAGCTCAGCT
TCTACCAGCTTCTCAGCACTACCAACAGCCTCGTAACAGCTCTACCATCGTCTCAGCACTACCAT
CGTCTCAGCGTCCATCACCCGTGGCGTCATCAACACAGCTCTTATTCGTCTATGTGTCTATTTCA
CAGCGTCTCCGGCTCCACCGCGCCCGCCTCCGCCGCAGGCGTCTC
Right flanking sequence: Indices 45396 -- 45895
AGGCGTCTCCTCCATCTCCCCCATCTCCGCCACAGGCGTCCCGGCCACGGGCGTGCCCCGCATCA
GCGCGTCCACGTCGCCGCGGCTGGCGTAAAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCG
TCCAAGTTCGCAATGGCCGTGGCCGCAAACTCCCCCACCTCAAACTGCACCACCGCACACCCCAG
CGGCCGCCCGTCGCCCAGGTACTGGAGCTCGGCCCGCGTCACCCGCCCCACGGTCTCAAACAAGT
CAAACAAGTCCTCCTGCGACGTGACAAACGGCATGTTGGCCACGTACACGGTGTCGGACGCAGCC
CCGCCACCCACCACCCCGGCCGTGAACTCGGAGTTGGCCACGGGCGCAGGCCGCTCGCGCTGCCG
CTCCCCGCGCTCCTGCCGCTCGGGCCGCTCGCGCTCGCTCCGGTCACCGCGCCCGGGCCGGAGAT
CCAACCGCCGGCCCGCAATCTCGTACCCCTGAAACATGTCAAGAG
Found at i:45390 original size:12 final size:12
Alignment explanation
Indices: 45373--45405 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
45363 GTCCTCGGCT
*
45373 GGCGTCTCCATC
1 GGCGTCTCCATA
45385 GGCGTCTCCATA
1 GGCGTCTCCATA
45397 GGCGTCTCC
1 GGCGTCTCC
45406 TCCATCTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.39, G:0.27, T:0.24
Consensus pattern (12 bp):
GGCGTCTCCATA
Left flanking sequence: Indices 44873 -- 45372
TCATTTTCAGCTTCTCACTCTACCAACAGCTTCTTAACAGCGTTTTCAGCTCTACAAAAAGCTTC
TCAGCCTCGCTCTCCATCAACACCGTATGCCCATGCTTAACTCTTTCAGCTTCTTTCATTCAGCT
TTCATTCTACCAACAGCTTATGCTCATACTCAGCTTCTTTCACTTAGCTTCTTTCATTCAGCTTT
CATTCTACCAACAGCTCCTATCGCTTTTTCAATCTATCATCAGCACTACCAACAGCTTCTACCAA
CAGCTCAGCTTCTACCAGCTTCTCAGCACTACCAACAGCCTCGTAACAGCTCTACCATCGTCTCA
GCACTACCATCGTCTCAGCGTCCATCACCCGTGGCGTCATCAACACAGCTCTTATTCGTCTATGT
GTCTATTTCACAGCGTCTCCGGCTCCACCGCGCCCGCCTCCGCCGCAGGCGTCTCCTCCATCTTA
TCCTCGGCTGGCGTCTCCATGGGCGTCTCCATCTTGTCCTCGGCT
Right flanking sequence: Indices 45406 -- 45905
TCCATCTCCCCCATCTCCGCCACAGGCGTCCCGGCCACGGGCGTGCCCCGCATCAGCGCGTCCAC
GTCGCCGCGGCTGGCGTAAAGAATCAGCAACTGGCGCCCGCCGTAGTTGTACCCGTCCAAGTTCG
CAATGGCCGTGGCCGCAAACTCCCCCACCTCAAACTGCACCACCGCACACCCCAGCGGCCGCCCG
TCGCCCAGGTACTGGAGCTCGGCCCGCGTCACCCGCCCCACGGTCTCAAACAAGTCAAACAAGTC
CTCCTGCGACGTGACAAACGGCATGTTGGCCACGTACACGGTGTCGGACGCAGCCCCGCCACCCA
CCACCCCGGCCGTGAACTCGGAGTTGGCCACGGGCGCAGGCCGCTCGCGCTGCCGCTCCCCGCGC
TCCTGCCGCTCGGGCCGCTCGCGCTCGCTCCGGTCACCGCGCCCGGGCCGGAGATCCAACCGCCG
GCCCGCAATCTCGTACCCCTGAAACATGTCAAGAGCCCGGGCCGC
Found at i:46579 original size:12 final size:12
Alignment explanation
Indices: 46562--46618 Score: 114
Period size: 12 Copynumber: 4.8 Consensus size: 12
46552 CGGTCGTAGC
46562 CCAGACGGTGGT
1 CCAGACGGTGGT
46574 CCAGACGGTGGT
1 CCAGACGGTGGT
46586 CCAGACGGTGGT
1 CCAGACGGTGGT
46598 CCAGACGGTGGT
1 CCAGACGGTGGT
46610 CCAGACGGT
1 CCAGACGGT
46619 CGCGGTCGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 45 1.00
ACGTcount: A:0.18, C:0.26, G:0.40, T:0.16
Consensus pattern (12 bp):
CCAGACGGTGGT
Left flanking sequence: Indices 46062 -- 46561
GGTGGTGAGCGGCCCAAACGTCTCGGGGTTGGGCGGCTGGCGCTCGCGCTGGCGGTCCCGCGGCA
CCCGCTCGCGCCGCTCGTCGCGCCGCCGGGGCTCCGCCGGAGGCTGGTCCTGCCGCACAAAAATC
TCGCGGCCCCGCATCTGCTGGTGGTTGAACATGTCGATGGCGCGTTCGACGTCATCGCGCAGGCG
GAACTCGACGGTGGCCATCCCGCGCGACCGCCCGCGGTTGGTGACGATGTCGGCCCGCACCACCT
CGAAGCCCGCGCCGGCGTCGTCGAACATCCGCTGCACGTCGAACGCCAGCAGGTCGTACGGCAAG
TTGCCGATGAAGATCAGGTTGTCGAAGTTGCGCTCCAGCTTGTTGCGGGTGTCGTCGTCGTCCAT
GGTGGAGAACGCGGGCGGCGGCGGCCCCTGGCGGCTGCGCAGGTTGAAGTCGCGCCCGCGGAAGG
TGCGTTCTTGGCGGTCGTAGCCCAGCCCGCGGTCGCGGTCGTAGC
Right flanking sequence: Indices 46619 -- 47118
CGCGGTCGTAACGGTCCAGGCCACGGTCCAGGCCGTAACGGTCCTGGCGGTCGTAGCCGTCGCGG
CTGCCCCGGTTGTCGCGGCCTCCGCGCCCGCGGCGGTCGTTCCCGCGGCGGGCGCGGCCGTCGTA
GCGGTCGCGGTCCTGGCGGTCGCGGGGGTCGGCGCGGGGGTCGCGGCGGGGCAGCCGGTCGCGCT
GGGGCGATCTCAGGCGGTCCTGGCGGTTAGTACGGGCGCGTGGGGGCTCCGGCAGCGGGCGGGTG
GCGCTACTTACTCTCGAGTAGTCGTCTAGGTCCATGTCCATGGTTGTCGACGTTGATGGGTTGCG
CGCGCGGTGAAAAATGAAGTAGCGTAGGGGAAGCGAGGGGAAGCGAGGGGAAGGCATGGAAGGCA
TAGAGAAGGCATAGAGAAGGTATAGAGAAGACATAGAGGATGGGTGGGGAGGGGACGAGTGGTGG
GTGTAGTGGGTGTGGTATTGTGGTGACTTGGGGGTGGTTGAGTGG
Found at i:46661 original size:15 final size:15
Alignment explanation
Indices: 46625--46662 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 15
46615 CGGTCGCGGT
46625 CGTAACGGTCCAGGC
1 CGTAACGGTCCAGGC
46640 C---ACGGTCCAGGC
1 CGTAACGGTCCAGGC
46652 CGTAACGGTCC
1 CGTAACGGTCC
46663 TGGCGGTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
12 12 0.60
15 8 0.40
ACGTcount: A:0.18, C:0.37, G:0.32, T:0.13
Consensus pattern (15 bp):
CGTAACGGTCCAGGC
Left flanking sequence: Indices 46125 -- 46624
CACCCGCTCGCGCCGCTCGTCGCGCCGCCGGGGCTCCGCCGGAGGCTGGTCCTGCCGCACAAAAA
TCTCGCGGCCCCGCATCTGCTGGTGGTTGAACATGTCGATGGCGCGTTCGACGTCATCGCGCAGG
CGGAACTCGACGGTGGCCATCCCGCGCGACCGCCCGCGGTTGGTGACGATGTCGGCCCGCACCAC
CTCGAAGCCCGCGCCGGCGTCGTCGAACATCCGCTGCACGTCGAACGCCAGCAGGTCGTACGGCA
AGTTGCCGATGAAGATCAGGTTGTCGAAGTTGCGCTCCAGCTTGTTGCGGGTGTCGTCGTCGTCC
ATGGTGGAGAACGCGGGCGGCGGCGGCCCCTGGCGGCTGCGCAGGTTGAAGTCGCGCCCGCGGAA
GGTGCGTTCTTGGCGGTCGTAGCCCAGCCCGCGGTCGCGGTCGTAGCCCAGACGGTGGTCCAGAC
GGTGGTCCAGACGGTGGTCCAGACGGTGGTCCAGACGGTCGCGGT
Right flanking sequence: Indices 46663 -- 47162
TGGCGGTCGTAGCCGTCGCGGCTGCCCCGGTTGTCGCGGCCTCCGCGCCCGCGGCGGTCGTTCCC
GCGGCGGGCGCGGCCGTCGTAGCGGTCGCGGTCCTGGCGGTCGCGGGGGTCGGCGCGGGGGTCGC
GGCGGGGCAGCCGGTCGCGCTGGGGCGATCTCAGGCGGTCCTGGCGGTTAGTACGGGCGCGTGGG
GGCTCCGGCAGCGGGCGGGTGGCGCTACTTACTCTCGAGTAGTCGTCTAGGTCCATGTCCATGGT
TGTCGACGTTGATGGGTTGCGCGCGCGGTGAAAAATGAAGTAGCGTAGGGGAAGCGAGGGGAAGC
GAGGGGAAGGCATGGAAGGCATAGAGAAGGCATAGAGAAGGTATAGAGAAGACATAGAGGATGGG
TGGGGAGGGGACGAGTGGTGGGTGTAGTGGGTGTGGTATTGTGGTGACTTGGGGGTGGTTGAGTG
GTTGGACTGGTTTATATGGTTTGGGCCTTTTCAGTAGTGTTTTTT
Found at i:46984 original size:10 final size:10
Alignment explanation
Indices: 46964--46996 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
46954 AAAATGAAGT
46964 AGCGTAGGGGA
1 AGCG-AGGGGA
46975 AGCGAGGGGA
1 AGCGAGGGGA
46985 AGCGAGGGGA
1 AGCGAGGGGA
46995 AG
1 AG
46997 GCATGGAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.30, C:0.09, G:0.58, T:0.03
Consensus pattern (10 bp):
AGCGAGGGGA
Left flanking sequence: Indices 46464 -- 46963
GGGCGGCGGCGGCCCCTGGCGGCTGCGCAGGTTGAAGTCGCGCCCGCGGAAGGTGCGTTCTTGGC
GGTCGTAGCCCAGCCCGCGGTCGCGGTCGTAGCCCAGACGGTGGTCCAGACGGTGGTCCAGACGG
TGGTCCAGACGGTGGTCCAGACGGTCGCGGTCGTAACGGTCCAGGCCACGGTCCAGGCCGTAACG
GTCCTGGCGGTCGTAGCCGTCGCGGCTGCCCCGGTTGTCGCGGCCTCCGCGCCCGCGGCGGTCGT
TCCCGCGGCGGGCGCGGCCGTCGTAGCGGTCGCGGTCCTGGCGGTCGCGGGGGTCGGCGCGGGGG
TCGCGGCGGGGCAGCCGGTCGCGCTGGGGCGATCTCAGGCGGTCCTGGCGGTTAGTACGGGCGCG
TGGGGGCTCCGGCAGCGGGCGGGTGGCGCTACTTACTCTCGAGTAGTCGTCTAGGTCCATGTCCA
TGGTTGTCGACGTTGATGGGTTGCGCGCGCGGTGAAAAATGAAGT
Right flanking sequence: Indices 46997 -- 47496
GCATGGAAGGCATAGAGAAGGCATAGAGAAGGTATAGAGAAGACATAGAGGATGGGTGGGGAGGG
GACGAGTGGTGGGTGTAGTGGGTGTGGTATTGTGGTGACTTGGGGGTGGTTGAGTGGTTGGACTG
GTTTATATGGTTTGGGCCTTTTCAGTAGTGTTTTTTGGTAGGTTAGGGACAATAGGGTTAGGAGC
AAGACAGTTGGGAGCAATGGTGGTAGAGAGAAGGAGAGAGCAGTGGGAGCAACGGTGGGAGAGCG
AAGGTGATGGAAGTGGGAGACACAGGGGAAAGAGAAGGAGATAGCAGTGGGGAAACAGGGAGAAT
GACGGTGGCGAGGCGAACTGGAAAGTTGGGTGGTGTAGATGAGTAGAACCAGCGAGATACCGGGT
GAGAGTAGGCATCACGAGAGACAGCATTGAGACGCTATGTTTACCGGCGGGACTGGTGGGACAGA
CTGAGTAGACCGGCGAGAAACCTAGATACGAGGGTGAATCAATTA
Found at i:47018 original size:11 final size:11
Alignment explanation
Indices: 46993--47046 Score: 76
Period size: 11 Copynumber: 5.1 Consensus size: 11
46983 GAAGCGAGGG
46993 GAAGGCAT-G-
1 GAAGGCATAGA
47002 GAAGGCATAGA
1 GAAGGCATAGA
47013 GAAGGCATAGA
1 GAAGGCATAGA
*
47024 GAAGGTATAGA
1 GAAGGCATAGA
*
47035 GAAGACATAGA
1 GAAGGCATAGA
47046 G
1 G
47047 GATGGGTGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
9 8 0.20
10 1 0.03
11 31 0.77
ACGTcount: A:0.44, C:0.07, G:0.37, T:0.11
Consensus pattern (11 bp):
GAAGGCATAGA
Left flanking sequence: Indices 46493 -- 46992
GGTTGAAGTCGCGCCCGCGGAAGGTGCGTTCTTGGCGGTCGTAGCCCAGCCCGCGGTCGCGGTCG
TAGCCCAGACGGTGGTCCAGACGGTGGTCCAGACGGTGGTCCAGACGGTGGTCCAGACGGTCGCG
GTCGTAACGGTCCAGGCCACGGTCCAGGCCGTAACGGTCCTGGCGGTCGTAGCCGTCGCGGCTGC
CCCGGTTGTCGCGGCCTCCGCGCCCGCGGCGGTCGTTCCCGCGGCGGGCGCGGCCGTCGTAGCGG
TCGCGGTCCTGGCGGTCGCGGGGGTCGGCGCGGGGGTCGCGGCGGGGCAGCCGGTCGCGCTGGGG
CGATCTCAGGCGGTCCTGGCGGTTAGTACGGGCGCGTGGGGGCTCCGGCAGCGGGCGGGTGGCGC
TACTTACTCTCGAGTAGTCGTCTAGGTCCATGTCCATGGTTGTCGACGTTGATGGGTTGCGCGCG
CGGTGAAAAATGAAGTAGCGTAGGGGAAGCGAGGGGAAGCGAGGG
Right flanking sequence: Indices 47047 -- 47546
GATGGGTGGGGAGGGGACGAGTGGTGGGTGTAGTGGGTGTGGTATTGTGGTGACTTGGGGGTGGT
TGAGTGGTTGGACTGGTTTATATGGTTTGGGCCTTTTCAGTAGTGTTTTTTGGTAGGTTAGGGAC
AATAGGGTTAGGAGCAAGACAGTTGGGAGCAATGGTGGTAGAGAGAAGGAGAGAGCAGTGGGAGC
AACGGTGGGAGAGCGAAGGTGATGGAAGTGGGAGACACAGGGGAAAGAGAAGGAGATAGCAGTGG
GGAAACAGGGAGAATGACGGTGGCGAGGCGAACTGGAAAGTTGGGTGGTGTAGATGAGTAGAACC
AGCGAGATACCGGGTGAGAGTAGGCATCACGAGAGACAGCATTGAGACGCTATGTTTACCGGCGG
GACTGGTGGGACAGACTGAGTAGACCGGCGAGAAACCTAGATACGAGGGTGAATCAATTAACAAC
GGTAAACGGTTGACGTGAATGTTTGACGTGAATGTCTGACAACGA
Found at i:47239 original size:35 final size:33
Alignment explanation
Indices: 47200--47307 Score: 94
Period size: 35 Copynumber: 3.1 Consensus size: 33
47190 GCAAGACAGT
47200 TGGGAGCAATGGTGGTAGAGAGAAGGAGAGAGCAG
1 TGGGAGCAA-GGTGG-AGAGAGAAGGAGAGAGCAG
* * *
47235 TGGGAGCAACGGTGGGAGAGCGAAGGTGATG-GAAG
1 TGGGAGCAA-GGT-GGAGAGAGAAGGAGA-GAGCAG
* *
47270 TGGGAGACACAGG-GGAAAGAGAAGGAGATAGCAG
1 TGGGAG-CA-AGGTGGAGAGAGAAGGAGAGAGCAG
47304 TGGG
1 TGGG
47308 GAAACAGGGA
Statistics
Matches: 59, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
34 19 0.32
35 32 0.54
36 7 0.12
37 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.49, T:0.10
Consensus pattern (33 bp):
TGGGAGCAAGGTGGAGAGAGAAGGAGAGAGCAG
Left flanking sequence: Indices 46700 -- 47199
GGCCTCCGCGCCCGCGGCGGTCGTTCCCGCGGCGGGCGCGGCCGTCGTAGCGGTCGCGGTCCTGG
CGGTCGCGGGGGTCGGCGCGGGGGTCGCGGCGGGGCAGCCGGTCGCGCTGGGGCGATCTCAGGCG
GTCCTGGCGGTTAGTACGGGCGCGTGGGGGCTCCGGCAGCGGGCGGGTGGCGCTACTTACTCTCG
AGTAGTCGTCTAGGTCCATGTCCATGGTTGTCGACGTTGATGGGTTGCGCGCGCGGTGAAAAATG
AAGTAGCGTAGGGGAAGCGAGGGGAAGCGAGGGGAAGGCATGGAAGGCATAGAGAAGGCATAGAG
AAGGTATAGAGAAGACATAGAGGATGGGTGGGGAGGGGACGAGTGGTGGGTGTAGTGGGTGTGGT
ATTGTGGTGACTTGGGGGTGGTTGAGTGGTTGGACTGGTTTATATGGTTTGGGCCTTTTCAGTAG
TGTTTTTTGGTAGGTTAGGGACAATAGGGTTAGGAGCAAGACAGT
Right flanking sequence: Indices 47308 -- 47807
GAAACAGGGAGAATGACGGTGGCGAGGCGAACTGGAAAGTTGGGTGGTGTAGATGAGTAGAACCA
GCGAGATACCGGGTGAGAGTAGGCATCACGAGAGACAGCATTGAGACGCTATGTTTACCGGCGGG
ACTGGTGGGACAGACTGAGTAGACCGGCGAGAAACCTAGATACGAGGGTGAATCAATTAACAACG
GTAAACGGTTGACGTGAATGTTTGACGTGAATGTCTGACAACGAATTAGATAAGAATGTGGTGAA
TATCCTGTAAACCTCGCAAGGGAGGCAGCATTGACATGTACTTGCAAGGGAGGCAACATTGACAT
GTACTTTAGGATCAGACGTTGAATTAGACAGAGGCGATGTTTGCGAGATATTGCCCAACTGTGAT
CCACCACTAGACACCCAGTGAGCGTAATGGTGTACCCAGGCTCGACGTGACGTGTTAGTTCACGT
ACCTGTCTCAGCTGGGGGGCCGCAAGCGGCGCCCCCCAGACCCCC
Found at i:47306 original size:34 final size:34
Alignment explanation
Indices: 47218--47316 Score: 94
Period size: 34 Copynumber: 2.9 Consensus size: 34
47208 ATGGTGGTAG
* * *
47218 AGAGAAGGAGAGAGCAGTGGGAG-CAACGGTGGGAG
1 AGAGAAGGAGATAGCAGTGGGAGAC-ACAG-GGGAA
* * * *
47253 AGCGAAGGTGATGGAAGTGGGAGACACAGGGGAA
1 AGAGAAGGAGATAGCAGTGGGAGACACAGGGGAA
*
47287 AGAGAAGGAGATAGCAGTGGG-GAAACAGGG
1 AGAGAAGGAGATAGCAGTGGGAGACACAGGG
47317 AGAATGACGG
Statistics
Matches: 51, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
33 8 0.16
34 21 0.41
35 21 0.41
36 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.48, T:0.07
Consensus pattern (34 bp):
AGAGAAGGAGATAGCAGTGGGAGACACAGGGGAA
Left flanking sequence: Indices 46718 -- 47217
GGTCGTTCCCGCGGCGGGCGCGGCCGTCGTAGCGGTCGCGGTCCTGGCGGTCGCGGGGGTCGGCG
CGGGGGTCGCGGCGGGGCAGCCGGTCGCGCTGGGGCGATCTCAGGCGGTCCTGGCGGTTAGTACG
GGCGCGTGGGGGCTCCGGCAGCGGGCGGGTGGCGCTACTTACTCTCGAGTAGTCGTCTAGGTCCA
TGTCCATGGTTGTCGACGTTGATGGGTTGCGCGCGCGGTGAAAAATGAAGTAGCGTAGGGGAAGC
GAGGGGAAGCGAGGGGAAGGCATGGAAGGCATAGAGAAGGCATAGAGAAGGTATAGAGAAGACAT
AGAGGATGGGTGGGGAGGGGACGAGTGGTGGGTGTAGTGGGTGTGGTATTGTGGTGACTTGGGGG
TGGTTGAGTGGTTGGACTGGTTTATATGGTTTGGGCCTTTTCAGTAGTGTTTTTTGGTAGGTTAG
GGACAATAGGGTTAGGAGCAAGACAGTTGGGAGCAATGGTGGTAG
Right flanking sequence: Indices 47317 -- 47816
AGAATGACGGTGGCGAGGCGAACTGGAAAGTTGGGTGGTGTAGATGAGTAGAACCAGCGAGATAC
CGGGTGAGAGTAGGCATCACGAGAGACAGCATTGAGACGCTATGTTTACCGGCGGGACTGGTGGG
ACAGACTGAGTAGACCGGCGAGAAACCTAGATACGAGGGTGAATCAATTAACAACGGTAAACGGT
TGACGTGAATGTTTGACGTGAATGTCTGACAACGAATTAGATAAGAATGTGGTGAATATCCTGTA
AACCTCGCAAGGGAGGCAGCATTGACATGTACTTGCAAGGGAGGCAACATTGACATGTACTTTAG
GATCAGACGTTGAATTAGACAGAGGCGATGTTTGCGAGATATTGCCCAACTGTGATCCACCACTA
GACACCCAGTGAGCGTAATGGTGTACCCAGGCTCGACGTGACGTGTTAGTTCACGTACCTGTCTC
AGCTGGGGGGCCGCAAGCGGCGCCCCCCAGACCCCCCAACGCTTA
Found at i:47529 original size:13 final size:13
Alignment explanation
Indices: 47511--47541 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
47501 CGGTAAACGG
47511 TTGACGTGAATGT
1 TTGACGTGAATGT
47524 TTGACGTGAATGT
1 TTGACGTGAATGT
*
47537 CTGAC
1 TTGAC
47542 AACGAATTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.35
Consensus pattern (13 bp):
TTGACGTGAATGT
Left flanking sequence: Indices 47011 -- 47510
GAGAAGGCATAGAGAAGGTATAGAGAAGACATAGAGGATGGGTGGGGAGGGGACGAGTGGTGGGT
GTAGTGGGTGTGGTATTGTGGTGACTTGGGGGTGGTTGAGTGGTTGGACTGGTTTATATGGTTTG
GGCCTTTTCAGTAGTGTTTTTTGGTAGGTTAGGGACAATAGGGTTAGGAGCAAGACAGTTGGGAG
CAATGGTGGTAGAGAGAAGGAGAGAGCAGTGGGAGCAACGGTGGGAGAGCGAAGGTGATGGAAGT
GGGAGACACAGGGGAAAGAGAAGGAGATAGCAGTGGGGAAACAGGGAGAATGACGGTGGCGAGGC
GAACTGGAAAGTTGGGTGGTGTAGATGAGTAGAACCAGCGAGATACCGGGTGAGAGTAGGCATCA
CGAGAGACAGCATTGAGACGCTATGTTTACCGGCGGGACTGGTGGGACAGACTGAGTAGACCGGC
GAGAAACCTAGATACGAGGGTGAATCAATTAACAACGGTAAACGG
Right flanking sequence: Indices 47542 -- 48041
AACGAATTAGATAAGAATGTGGTGAATATCCTGTAAACCTCGCAAGGGAGGCAGCATTGACATGT
ACTTGCAAGGGAGGCAACATTGACATGTACTTTAGGATCAGACGTTGAATTAGACAGAGGCGATG
TTTGCGAGATATTGCCCAACTGTGATCCACCACTAGACACCCAGTGAGCGTAATGGTGTACCCAG
GCTCGACGTGACGTGTTAGTTCACGTACCTGTCTCAGCTGGGGGGCCGCAAGCGGCGCCCCCCAG
ACCCCCCAACGCTTATTTGAGTCAATTGGCTGCTACTATTCTATTCCGCGGAGGTTGCAAACGTC
GCTAGTAAACTGATAGCATCCGGTAAGAATTGTTCAAATTTGTGTAGTGCCCAATGTGAAGACTA
GAGACGAAGGCAATAACCACTTTCGAGTCACTAAAAAGATAAAGAGCTTTGGCTCCTTTATACCC
ATTTACGCATCTAATCAATACGGTAGCCATCTTACTGTGAGGCAG
Found at i:47627 original size:28 final size:28
Alignment explanation
Indices: 47583--47638 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
47573 TGTAAACCTC
*
47583 GCAAGGGAGGCAGCATTGACATGTACTT
1 GCAAGGGAGGCAACATTGACATGTACTT
47611 GCAAGGGAGGCAACATTGACATGTACTT
1 GCAAGGGAGGCAACATTGACATGTACTT
47639 TAGGATCAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.21
Consensus pattern (28 bp):
GCAAGGGAGGCAACATTGACATGTACTT
Left flanking sequence: Indices 47083 -- 47582
GTGTGGTATTGTGGTGACTTGGGGGTGGTTGAGTGGTTGGACTGGTTTATATGGTTTGGGCCTTT
TCAGTAGTGTTTTTTGGTAGGTTAGGGACAATAGGGTTAGGAGCAAGACAGTTGGGAGCAATGGT
GGTAGAGAGAAGGAGAGAGCAGTGGGAGCAACGGTGGGAGAGCGAAGGTGATGGAAGTGGGAGAC
ACAGGGGAAAGAGAAGGAGATAGCAGTGGGGAAACAGGGAGAATGACGGTGGCGAGGCGAACTGG
AAAGTTGGGTGGTGTAGATGAGTAGAACCAGCGAGATACCGGGTGAGAGTAGGCATCACGAGAGA
CAGCATTGAGACGCTATGTTTACCGGCGGGACTGGTGGGACAGACTGAGTAGACCGGCGAGAAAC
CTAGATACGAGGGTGAATCAATTAACAACGGTAAACGGTTGACGTGAATGTTTGACGTGAATGTC
TGACAACGAATTAGATAAGAATGTGGTGAATATCCTGTAAACCTC
Right flanking sequence: Indices 47639 -- 48138
TAGGATCAGACGTTGAATTAGACAGAGGCGATGTTTGCGAGATATTGCCCAACTGTGATCCACCA
CTAGACACCCAGTGAGCGTAATGGTGTACCCAGGCTCGACGTGACGTGTTAGTTCACGTACCTGT
CTCAGCTGGGGGGCCGCAAGCGGCGCCCCCCAGACCCCCCAACGCTTATTTGAGTCAATTGGCTG
CTACTATTCTATTCCGCGGAGGTTGCAAACGTCGCTAGTAAACTGATAGCATCCGGTAAGAATTG
TTCAAATTTGTGTAGTGCCCAATGTGAAGACTAGAGACGAAGGCAATAACCACTTTCGAGTCACT
AAAAAGATAAAGAGCTTTGGCTCCTTTATACCCATTTACGCATCTAATCAATACGGTAGCCATCT
TACTGTGAGGCAGTTACAGGAATTTAAACCTTGATAGGTTACACAACCTATTCCTGGATATTATT
ACACTTTATAGAGTAGAGTATCCCGACTATTGAATTCCCTTCTAA
Found at i:48474 original size:8 final size:8
Alignment explanation
Indices: 48443--48688 Score: 110
Period size: 8 Copynumber: 31.1 Consensus size: 8
48433 ATCACTTGGC
48443 AATCTGGT
1 AATCTGGT
* *
48451 AACCTGAT
1 AATCTGGT
48459 AATCTGGT
1 AATCTGGT
*
48467 AATTTGGT
1 AATCTGGT
*
48475 AATTTGGT
1 AATCTGGT
*
48483 AATTTGGT
1 AATCTGGT
*
48491 AATCTAGT
1 AATCTGGT
48499 AATCTGGT
1 AATCTGGT
*
48507 AATCTAG-
1 AATCTGGT
*
48514 -A-CTGGC
1 AATCTGGT
* * *
48520 AGTTTGGC
1 AATCTGGT
* * *
48528 AGTTTGGC
1 AATCTGGT
* * *
48536 AGTTTGGC
1 AATCTGGT
*
48544 AGTCTGGT
1 AATCTGGT
48552 AATCTGGT
1 AATCTGGT
48560 AATCTGGT
1 AATCTGGT
*
48568 GATCT--T
1 AATCTGGT
*
48574 ATATACTGGC
1 A-AT-CTGGT
*
48584 AGTCTGGT
1 AATCTGGT
48592 AATCTGGT
1 AATCTGGT
**
48600 AATCTTTT
1 AATCTGGT
*
48608 AATCTTGT
1 AATCTGGT
*
48616 -ATACTGGC
1 AAT-CTGGT
**
48624 GGTCTGGT
1 AATCTGGT
*
48632 AGTCTGG-
1 AATCTGGT
48639 AAGTCTGGT
1 AA-TCTGGT
*
48648 AGTCTGGT
1 AATCTGGT
*
48656 AGTCTGGT
1 AATCTGGT
*
48664 AGTCTGGT
1 AATCTGGT
*
48672 AGTCTGGT
1 AATCTGGT
*
48680 AGTCTGGT
1 AATCTGGT
48688 A
1 A
48689 GTCTAGCAGT
Statistics
Matches: 196, Mismatches: 31, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
5 3 0.02
6 2 0.01
7 5 0.03
8 182 0.93
9 3 0.02
10 1 0.01
ACGTcount: A:0.21, C:0.13, G:0.28, T:0.38
Consensus pattern (8 bp):
AATCTGGT
Left flanking sequence: Indices 47943 -- 48442
AATAACCACTTTCGAGTCACTAAAAAGATAAAGAGCTTTGGCTCCTTTATACCCATTTACGCATC
TAATCAATACGGTAGCCATCTTACTGTGAGGCAGTTACAGGAATTTAAACCTTGATAGGTTACAC
AACCTATTCCTGGATATTATTACACTTTATAGAGTAGAGTATCCCGACTATTGAATTCCCTTCTA
ATTCATAACCGTATTTAGTACCCTTCGATCTGAGTAAGAAATACACCATGGCGAAGAACGACGAA
AAATCACCAACGGAACCTTTGGCCCCTTCTGACCCCGAAACCGGGTCGCAACGAAGAGGTATACT
AGAGACGTAGGGGTTTTGTAGGTTGGAACCTGGCAAGTTGAAATCTGGCAAGCTGGAACGGGGTA
GTCTAGACTCTGGTATAGTTGTGACCTAAAAACCCGGTTTTGACGAAACCTGTTAGCTAAACCTG
TAAACCGATAGATCGCGTGGTTCACTGGTGAATTAATCACTTGGC
Right flanking sequence: Indices 48689 -- 49188
GTCTAGCAGTCTGGTAGTCTGTTAACCTTGTATACTGCCAGCCTCCTAGTCTGGTAGCCTCCTAA
CGCACCCACCCCCAGCCCTACGTCTACCTCATAAATCATTCTATTGCTAGTTCTATCACTTCTCG
GGCATCGGCAACACATGCCGCCGGTCCACCTCCGTCTCCTTGTTCACCTCCTCCTCGCCGTCAAA
CTTGAGCCGCACCTGGTCCTTGCGGTGCCCCACCACCGTCAGCGTGTAGAACGTGGTGGTTTCCG
GGTACCGGGCCAACACCCTCGTCCCGTAGGGATACGGCTGCAACAGCTTGGCCTCGCTGGGCACC
GGAATGAGCAAGATCTCCTTGTAGCTCGCCTTGAACGTCTGCCCCGGGTTGTTGTTCTCGTCGGG
CTCGGGGTCCCGGATCTCAAACTTCGTCCCGTCCGCCGTCACCTTCATCACCTCGCACTGGATCC
ACTCCTCCATGTGGCGGTTGCGCAACCGGAACGCCACCTCCAGCC
Found at i:48595 original size:40 final size:39
Alignment explanation
Indices: 48540--48688 Score: 158
Period size: 40 Copynumber: 3.7 Consensus size: 39
48530 TTTGGCAGTT
*
48540 TGGCAGTCTGGTAATCTGGTAATCTGGTGATCTTATATAC
1 TGGCAGTCTGGTAATCTGGTAATCTGGT-ATCTTGTATAC
**
48580 TGGCAGTCTGGTAATCTGGTAATCTTTTAATCTTGTATAC
1 TGGCAGTCTGGTAATCTGGTAATCTGGT-ATCTTGTATAC
* * *
48620 TGGCGGTCTGGTAGTCTGG-AAGTCTGGTAGTCTGGTAGT-C
1 TGGCAGTCTGGTAATCTGGTAA-TCTGGTA-TCTTGTA-TAC
* * *
48660 TGGTAGTCTGGTAGTCTGGTAGTCTGGTA
1 TGGCAGTCTGGTAATCTGGTAATCTGGTA
48689 GTCTAGCAGT
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.03
40 88 0.95
41 2 0.02
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.38
Consensus pattern (39 bp):
TGGCAGTCTGGTAATCTGGTAATCTGGTATCTTGTATAC
Left flanking sequence: Indices 48040 -- 48539
AGTTACAGGAATTTAAACCTTGATAGGTTACACAACCTATTCCTGGATATTATTACACTTTATAG
AGTAGAGTATCCCGACTATTGAATTCCCTTCTAATTCATAACCGTATTTAGTACCCTTCGATCTG
AGTAAGAAATACACCATGGCGAAGAACGACGAAAAATCACCAACGGAACCTTTGGCCCCTTCTGA
CCCCGAAACCGGGTCGCAACGAAGAGGTATACTAGAGACGTAGGGGTTTTGTAGGTTGGAACCTG
GCAAGTTGAAATCTGGCAAGCTGGAACGGGGTAGTCTAGACTCTGGTATAGTTGTGACCTAAAAA
CCCGGTTTTGACGAAACCTGTTAGCTAAACCTGTAAACCGATAGATCGCGTGGTTCACTGGTGAA
TTAATCACTTGGCAATCTGGTAACCTGATAATCTGGTAATTTGGTAATTTGGTAATTTGGTAATC
TAGTAATCTGGTAATCTAGACTGGCAGTTTGGCAGTTTGGCAGTT
Right flanking sequence: Indices 48689 -- 49188
GTCTAGCAGTCTGGTAGTCTGTTAACCTTGTATACTGCCAGCCTCCTAGTCTGGTAGCCTCCTAA
CGCACCCACCCCCAGCCCTACGTCTACCTCATAAATCATTCTATTGCTAGTTCTATCACTTCTCG
GGCATCGGCAACACATGCCGCCGGTCCACCTCCGTCTCCTTGTTCACCTCCTCCTCGCCGTCAAA
CTTGAGCCGCACCTGGTCCTTGCGGTGCCCCACCACCGTCAGCGTGTAGAACGTGGTGGTTTCCG
GGTACCGGGCCAACACCCTCGTCCCGTAGGGATACGGCTGCAACAGCTTGGCCTCGCTGGGCACC
GGAATGAGCAAGATCTCCTTGTAGCTCGCCTTGAACGTCTGCCCCGGGTTGTTGTTCTCGTCGGG
CTCGGGGTCCCGGATCTCAAACTTCGTCCCGTCCGCCGTCACCTTCATCACCTCGCACTGGATCC
ACTCCTCCATGTGGCGGTTGCGCAACCGGAACGCCACCTCCAGCC
Found at i:48689 original size:8 final size:8
Alignment explanation
Indices: 48625--48709 Score: 143
Period size: 8 Copynumber: 10.6 Consensus size: 8
48615 TATACTGGCG
48625 GTCTGGTA
1 GTCTGGTA
*
48633 GTCTGGAA
1 GTCTGGTA
48641 GTCTGGTA
1 GTCTGGTA
48649 GTCTGGTA
1 GTCTGGTA
48657 GTCTGGTA
1 GTCTGGTA
48665 GTCTGGTA
1 GTCTGGTA
48673 GTCTGGTA
1 GTCTGGTA
48681 GTCTGGTA
1 GTCTGGTA
* *
48689 GTCTAGCA
1 GTCTGGTA
48697 GTCTGGTA
1 GTCTGGTA
48705 GTCTG
1 GTCTG
48710 TTAACCTTGT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 71 1.00
ACGTcount: A:0.14, C:0.14, G:0.36, T:0.35
Consensus pattern (8 bp):
GTCTGGTA
Left flanking sequence: Indices 48125 -- 48624
GAATTCCCTTCTAATTCATAACCGTATTTAGTACCCTTCGATCTGAGTAAGAAATACACCATGGC
GAAGAACGACGAAAAATCACCAACGGAACCTTTGGCCCCTTCTGACCCCGAAACCGGGTCGCAAC
GAAGAGGTATACTAGAGACGTAGGGGTTTTGTAGGTTGGAACCTGGCAAGTTGAAATCTGGCAAG
CTGGAACGGGGTAGTCTAGACTCTGGTATAGTTGTGACCTAAAAACCCGGTTTTGACGAAACCTG
TTAGCTAAACCTGTAAACCGATAGATCGCGTGGTTCACTGGTGAATTAATCACTTGGCAATCTGG
TAACCTGATAATCTGGTAATTTGGTAATTTGGTAATTTGGTAATCTAGTAATCTGGTAATCTAGA
CTGGCAGTTTGGCAGTTTGGCAGTTTGGCAGTCTGGTAATCTGGTAATCTGGTGATCTTATATAC
TGGCAGTCTGGTAATCTGGTAATCTTTTAATCTTGTATACTGGCG
Right flanking sequence: Indices 48710 -- 49209
TTAACCTTGTATACTGCCAGCCTCCTAGTCTGGTAGCCTCCTAACGCACCCACCCCCAGCCCTAC
GTCTACCTCATAAATCATTCTATTGCTAGTTCTATCACTTCTCGGGCATCGGCAACACATGCCGC
CGGTCCACCTCCGTCTCCTTGTTCACCTCCTCCTCGCCGTCAAACTTGAGCCGCACCTGGTCCTT
GCGGTGCCCCACCACCGTCAGCGTGTAGAACGTGGTGGTTTCCGGGTACCGGGCCAACACCCTCG
TCCCGTAGGGATACGGCTGCAACAGCTTGGCCTCGCTGGGCACCGGAATGAGCAAGATCTCCTTG
TAGCTCGCCTTGAACGTCTGCCCCGGGTTGTTGTTCTCGTCGGGCTCGGGGTCCCGGATCTCAAA
CTTCGTCCCGTCCGCCGTCACCTTCATCACCTCGCACTGGATCCACTCCTCCATGTGGCGGTTGC
GCAACCGGAACGCCACCTCCAGCCCCACCACGATGGGCTCCAGGG
Found at i:49841 original size:14 final size:14
Alignment explanation
Indices: 49818--49849 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
49808 TAGTGAGGTG
49818 ATGGTAGTGCGACT
1 ATGGTAGTGCGACT
49832 ATGGTAGTGCGACT
1 ATGGTAGTGCGACT
49846 ATGG
1 ATGG
49850 AGGCGATAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.12, G:0.38, T:0.28
Consensus pattern (14 bp):
ATGGTAGTGCGACT
Left flanking sequence: Indices 49318 -- 49817
CCGACCCCTCCGGGGCGTGGGGGGAGCCTGGCTCCAGTTTGACCCGTTCCAGGGCCTGGAGGTGG
CTGATGATCGTCTGGAGGTTCTCCTGCGACGTCTGGATCAACCGCTTGGCACTGGCCAAGTTGCT
GCGGTGGTCCCCGATCTCCTCCACCGCACTGGCCTTGGCTCCGTCGTCCATCGCGCCAATCTTGT
CGTCGGTCATGTCGTCAAACACGTTCCCAAACAGGAGCAGCAGGTTGGCGTTGCATATGTCCTGC
AACAGCGTGATGACGATGTCCCAGTGGCCCTCTGTTTCCAGCGACACGGCCATGGCTGTTGTTTT
TCGGGCGCGCTACCATTAAGTGGTGGAGACGGTGGTGTGGGGGGGAGAGTGGGAGGAAAGGTGGG
GAATGGAAGAAGGTGAAGGGGTTGGGAGTGGGGTGTGGTAAGGGAGGGGTGAGTGGGTGTGAAGT
GGGTGAGGGTGGTGGGTGTGGTGCCGAGGCGGTGGTAGTGAGGTG
Right flanking sequence: Indices 49850 -- 50349
AGGCGATAGGCCTTGGTAGTGAGGATTGGGTAGTGAGGCTGTGGTAGTGAGGCTGGGGAGTGAGG
CTGTGGGAGTGAGACTGTGGGAGTGAGAGCAGGTACTAGTGTCGTGTGTTGAGAGGTAGCAGTTT
ATCGATTGGCTAGAAACTTGGTTTGGTGGTGGAAAACCTGGAGTATTCCCTTAAGACGATTGTGG
GGTCAAGTACACCAGTTGGGATAATAAAATGGGTCTATACGTTAGTTGAATGACAGGGAATACAA
GCTACTGTGAGGTGAAGTCATGTCTCCTCCACTCTGTGCCCATTGCGACCGATTCTTCCTAGATC
GGGTACTCGGATTTCTCCTGTACCTAATCCCACAGTACGAATGGCTGCAAAATGTATGAGAAGAG
ACACAACAAAACTCCCATCAACCACTAGTTAAAATGCTAGAATCATGTGGGGTAACCGCATTTGC
AAGTGTTTAAATTAGTACAACCTCCAACAGAGTTGCATCTGTTTG
Found at i:49914 original size:27 final size:27
Alignment explanation
Indices: 49863--49941 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
49853 CGATAGGCCT
* *
49863 TGGTAGTGAGGATTGGGTAGTGAGGCTG
1 TGGTAGTGAGG-CTGGGGAGTGAGGCTG
49891 TGGTAGTGAGGCTGGGGAGTGAGGCTG
1 TGGTAGTGAGGCTGGGGAGTGAGGCTG
* *
49918 TGGGAGTGAGACTGTGGGAGTGAG
1 TGGTAGTGAGGCTG-GGGAGTGAG
49942 AGCAGGTACT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 26 0.57
28 20 0.43
ACGTcount: A:0.18, C:0.05, G:0.53, T:0.24
Consensus pattern (27 bp):
TGGTAGTGAGGCTGGGGAGTGAGGCTG
Left flanking sequence: Indices 49363 -- 49862
GTTCCAGGGCCTGGAGGTGGCTGATGATCGTCTGGAGGTTCTCCTGCGACGTCTGGATCAACCGC
TTGGCACTGGCCAAGTTGCTGCGGTGGTCCCCGATCTCCTCCACCGCACTGGCCTTGGCTCCGTC
GTCCATCGCGCCAATCTTGTCGTCGGTCATGTCGTCAAACACGTTCCCAAACAGGAGCAGCAGGT
TGGCGTTGCATATGTCCTGCAACAGCGTGATGACGATGTCCCAGTGGCCCTCTGTTTCCAGCGAC
ACGGCCATGGCTGTTGTTTTTCGGGCGCGCTACCATTAAGTGGTGGAGACGGTGGTGTGGGGGGG
AGAGTGGGAGGAAAGGTGGGGAATGGAAGAAGGTGAAGGGGTTGGGAGTGGGGTGTGGTAAGGGA
GGGGTGAGTGGGTGTGAAGTGGGTGAGGGTGGTGGGTGTGGTGCCGAGGCGGTGGTAGTGAGGTG
ATGGTAGTGCGACTATGGTAGTGCGACTATGGAGGCGATAGGCCT
Right flanking sequence: Indices 49942 -- 50441
AGCAGGTACTAGTGTCGTGTGTTGAGAGGTAGCAGTTTATCGATTGGCTAGAAACTTGGTTTGGT
GGTGGAAAACCTGGAGTATTCCCTTAAGACGATTGTGGGGTCAAGTACACCAGTTGGGATAATAA
AATGGGTCTATACGTTAGTTGAATGACAGGGAATACAAGCTACTGTGAGGTGAAGTCATGTCTCC
TCCACTCTGTGCCCATTGCGACCGATTCTTCCTAGATCGGGTACTCGGATTTCTCCTGTACCTAA
TCCCACAGTACGAATGGCTGCAAAATGTATGAGAAGAGACACAACAAAACTCCCATCAACCACTA
GTTAAAATGCTAGAATCATGTGGGGTAACCGCATTTGCAAGTGTTTAAATTAGTACAACCTCCAA
CAGAGTTGCATCTGTTTGTGTTTTTTACAACTGCTTCCACTTGCTTCCACCTGCAGCCCTGTCAG
TCACCAACTGCTCAACTTTCCTATTCCATTTGTGTTTCTCTGCTA
Found at i:49942 original size:14 final size:14
Alignment explanation
Indices: 49867--49941 Score: 100
Period size: 14 Copynumber: 5.4 Consensus size: 14
49857 AGGCCTTGGT
*
49867 AGTGAGGAT-TGGG
1 AGTGAGGCTGTGGG
*
49880 TAGTGAGGCTGTGGT
1 -AGTGAGGCTGTGGG
49895 AGTGAGGCTG-GGG
1 AGTGAGGCTGTGGG
49908 AGTGAGGCTGTGGG
1 AGTGAGGCTGTGGG
*
49922 AGTGAGACTGTGGG
1 AGTGAGGCTGTGGG
49936 AGTGAG
1 AGTGAG
49942 AGCAGGTACT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
13 12 0.22
14 40 0.73
15 3 0.05
ACGTcount: A:0.19, C:0.05, G:0.53, T:0.23
Consensus pattern (14 bp):
AGTGAGGCTGTGGG
Left flanking sequence: Indices 49367 -- 49866
CAGGGCCTGGAGGTGGCTGATGATCGTCTGGAGGTTCTCCTGCGACGTCTGGATCAACCGCTTGG
CACTGGCCAAGTTGCTGCGGTGGTCCCCGATCTCCTCCACCGCACTGGCCTTGGCTCCGTCGTCC
ATCGCGCCAATCTTGTCGTCGGTCATGTCGTCAAACACGTTCCCAAACAGGAGCAGCAGGTTGGC
GTTGCATATGTCCTGCAACAGCGTGATGACGATGTCCCAGTGGCCCTCTGTTTCCAGCGACACGG
CCATGGCTGTTGTTTTTCGGGCGCGCTACCATTAAGTGGTGGAGACGGTGGTGTGGGGGGGAGAG
TGGGAGGAAAGGTGGGGAATGGAAGAAGGTGAAGGGGTTGGGAGTGGGGTGTGGTAAGGGAGGGG
TGAGTGGGTGTGAAGTGGGTGAGGGTGGTGGGTGTGGTGCCGAGGCGGTGGTAGTGAGGTGATGG
TAGTGCGACTATGGTAGTGCGACTATGGAGGCGATAGGCCTTGGT
Right flanking sequence: Indices 49942 -- 50441
AGCAGGTACTAGTGTCGTGTGTTGAGAGGTAGCAGTTTATCGATTGGCTAGAAACTTGGTTTGGT
GGTGGAAAACCTGGAGTATTCCCTTAAGACGATTGTGGGGTCAAGTACACCAGTTGGGATAATAA
AATGGGTCTATACGTTAGTTGAATGACAGGGAATACAAGCTACTGTGAGGTGAAGTCATGTCTCC
TCCACTCTGTGCCCATTGCGACCGATTCTTCCTAGATCGGGTACTCGGATTTCTCCTGTACCTAA
TCCCACAGTACGAATGGCTGCAAAATGTATGAGAAGAGACACAACAAAACTCCCATCAACCACTA
GTTAAAATGCTAGAATCATGTGGGGTAACCGCATTTGCAAGTGTTTAAATTAGTACAACCTCCAA
CAGAGTTGCATCTGTTTGTGTTTTTTACAACTGCTTCCACTTGCTTCCACCTGCAGCCCTGTCAG
TCACCAACTGCTCAACTTTCCTATTCCATTTGTGTTTCTCTGCTA
Found at i:52397 original size:12 final size:12
Alignment explanation
Indices: 52370--52406 Score: 65
Period size: 12 Copynumber: 3.0 Consensus size: 12
52360 CTGCAAAGTG
52370 GCTGCAAATAAAA
1 GCTGCAAAT-AAA
52383 GCTGCAAATAAA
1 GCTGCAAATAAA
52395 GCTGCAAATAAA
1 GCTGCAAATAAA
52407 AGTGGCTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.16
Consensus pattern (12 bp):
GCTGCAAATAAA
Left flanking sequence: Indices 51870 -- 52369
GTTAGCTAGATGGTGCCACGGCATCCCCAATGCTCCCGACAAATATGAAGCCTTCCGCATGTTGG
CAGCCTTTGTGGGGGGAAGACAACTCGTGGAAACCTGTTGGTGCCCGGTGTGTGAAATCTGGGAA
CCCAAAACAGAGGAAACGCTGAAACTCACCGGGCACCAGTTACCCGTGCACCACTGTAAAATGGG
GAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAGTCTTGTTGCGAAGTTTTGCGAGCGTCAGG
CCGAGGATCGGTACGTATGGCCCAAACTATGAGACCCGGGCAGCCGCTGAAGAAATACAAGTGAT
CAATTGATGAAACAAAGTAGTAGTAGAAAATACCCGTAAGCCCACGTGAGGGCCCACATGAAGGA
GTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCACCGCCTTCTCTATGCCCTCTTCATCTGCTC
CCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGACTGCAAAGTG
Right flanking sequence: Indices 52407 -- 52906
AGTGGCTGCAAATAAAAGTGGCTGCAAATAGAAGTGGCTGCAAATAAAAGTGGCTGCAAATAAAA
GTGGCTGCAAATAAAAGTGCGCAAATTCCAAAGTGGCTGCAAATCTCAGTGTCTGCAAATTTCAG
TGTCTGCAAATTTCAATGGCTGCAAATTTCAATGGCTGCAAATTTGCAGATTTCAAAATGGTTGC
AAATGTCAAGTTACTCTTACACATTGCAACGGTTCTATCTCACCAGCTACAATCCTCCTGCTCTA
GCTCTATCTGTTTGTTCATTAGTCATCAATGCGTGCTATTTTCGCCCGTTGAGCTTTGCGTTCGG
TGGTTTGGGCGACTTCAAGAGATTAGTGACGATTTTCTTGGTCTTGGACGGCGGATGGCGGCCGG
GAGCGGGTGTGGGTGCCTGGACCGGCGGCGGGAGCTCCCCGTCGTACCCGGGTGCGGGCTCCGAC
ACCTCCTCGGCCTCGGAGATCGCCTCGTGGTATGTGGGCACCTCC
Found at i:52416 original size:16 final size:16
Alignment explanation
Indices: 52364--52515 Score: 205
Period size: 16 Copynumber: 9.9 Consensus size: 16
52354 CATTGACTGC
52364 AAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
52380 AAA---GCTGCAAAT-
1 AAAGTGGCTGCAAATA
52392 AAA---GCTGCAAATA
1 AAAGTGGCTGCAAATA
52405 AAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
52421 AAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
*
52437 GAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
52453 AAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
52469 AAAGTGGCTGCAAATA
1 AAAGTGGCTGCAAATA
*
52485 AAAGT-GC-GCAAATTCC
1 AAAGTGGCTGCAAA-T-A
52501 AAAGTGGCTGCAAAT
1 AAAGTGGCTGCAAAT
52516 CTCAGTGTCT
Statistics
Matches: 125, Mismatches: 3, Indels: 15
0.87 0.02 0.10
Matches are distributed among these distances:
12 12 0.10
13 12 0.10
14 5 0.04
15 3 0.02
16 85 0.68
17 3 0.02
18 5 0.04
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.18
Consensus pattern (16 bp):
AAAGTGGCTGCAAATA
Left flanking sequence: Indices 51864 -- 52363
ATTTCGGTTAGCTAGATGGTGCCACGGCATCCCCAATGCTCCCGACAAATATGAAGCCTTCCGCA
TGTTGGCAGCCTTTGTGGGGGGAAGACAACTCGTGGAAACCTGTTGGTGCCCGGTGTGTGAAATC
TGGGAACCCAAAACAGAGGAAACGCTGAAACTCACCGGGCACCAGTTACCCGTGCACCACTGTAA
AATGGGGAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAGTCTTGTTGCGAAGTTTTGCGAGC
GTCAGGCCGAGGATCGGTACGTATGGCCCAAACTATGAGACCCGGGCAGCCGCTGAAGAAATACA
AGTGATCAATTGATGAAACAAAGTAGTAGTAGAAAATACCCGTAAGCCCACGTGAGGGCCCACAT
GAAGGAGTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCACCGCCTTCTCTATGCCCTCTTCAT
CTGCTCCCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGACTGC
Right flanking sequence: Indices 52516 -- 53015
CTCAGTGTCTGCAAATTTCAGTGTCTGCAAATTTCAATGGCTGCAAATTTCAATGGCTGCAAATT
TGCAGATTTCAAAATGGTTGCAAATGTCAAGTTACTCTTACACATTGCAACGGTTCTATCTCACC
AGCTACAATCCTCCTGCTCTAGCTCTATCTGTTTGTTCATTAGTCATCAATGCGTGCTATTTTCG
CCCGTTGAGCTTTGCGTTCGGTGGTTTGGGCGACTTCAAGAGATTAGTGACGATTTTCTTGGTCT
TGGACGGCGGATGGCGGCCGGGAGCGGGTGTGGGTGCCTGGACCGGCGGCGGGAGCTCCCCGTCG
TACCCGGGTGCGGGCTCCGACACCTCCTCGGCCTCGGAGATCGCCTCGTGGTATGTGGGCACCTC
CAGCGGCGTCCGCACCTTTTCCCCCGACACAGGGATGTCAAAGTACCCCAGCGGCTCGTTCTGCG
AGTCGAGCGACACGTCCTCGGTGTGGCGGTTGTACACCGGCGGCG
Found at i:52522 original size:16 final size:16
Alignment explanation
Indices: 52365--52579 Score: 166
Period size: 16 Copynumber: 13.9 Consensus size: 16
52355 ATTGACTGCA
52365 AAGTGGCTGCAAATA-
1 AAGTGGCTGCAAATAT
*
52380 AA--AGCTGCAAATA-
1 AAGTGGCTGCAAATAT
*
52393 AA---GCTGCAAATAA
1 AAGTGGCTGCAAATAT
*
52406 AAGTGGCTGCAAATAA
1 AAGTGGCTGCAAATAT
*
52422 AAGTGGCTGCAAATAG
1 AAGTGGCTGCAAATAT
*
52438 AAGTGGCTGCAAATAA
1 AAGTGGCTGCAAATAT
*
52454 AAGTGGCTGCAAATAA
1 AAGTGGCTGCAAATAT
*
52470 AAGTGGCTGCAAATAA
1 AAGTGGCTGCAAATAT
52486 AAGT-GC-GCAAAT-T
1 AAGTGGCTGCAAATAT
*
52499 CCAAAGTGGCTGCAAATCT
1 ---AAGTGGCTGCAAATAT
* * *
52518 CAGTGTCTGCAAATTT
1 AAGTGGCTGCAAATAT
* * *
52534 CAGTGTCTGCAAATTT
1 AAGTGGCTGCAAATAT
*
52550 CAA-TGGCTGCAAATTT
1 -AAGTGGCTGCAAATAT
52566 CAA-TGGCTGCAAAT
1 -AAGTGGCTGCAAAT
52580 TTGCAGATTT
Statistics
Matches: 180, Mismatches: 9, Indels: 21
0.86 0.04 0.10
Matches are distributed among these distances:
12 10 0.06
13 14 0.08
14 6 0.03
15 4 0.02
16 136 0.76
17 3 0.02
18 6 0.03
19 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (16 bp):
AAGTGGCTGCAAATAT
Left flanking sequence: Indices 51865 -- 52364
TTTCGGTTAGCTAGATGGTGCCACGGCATCCCCAATGCTCCCGACAAATATGAAGCCTTCCGCAT
GTTGGCAGCCTTTGTGGGGGGAAGACAACTCGTGGAAACCTGTTGGTGCCCGGTGTGTGAAATCT
GGGAACCCAAAACAGAGGAAACGCTGAAACTCACCGGGCACCAGTTACCCGTGCACCACTGTAAA
ATGGGGAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAGTCTTGTTGCGAAGTTTTGCGAGCG
TCAGGCCGAGGATCGGTACGTATGGCCCAAACTATGAGACCCGGGCAGCCGCTGAAGAAATACAA
GTGATCAATTGATGAAACAAAGTAGTAGTAGAAAATACCCGTAAGCCCACGTGAGGGCCCACATG
AAGGAGTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCACCGCCTTCTCTATGCCCTCTTCATC
TGCTCCCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGACTGCA
Right flanking sequence: Indices 52580 -- 53079
TTGCAGATTTCAAAATGGTTGCAAATGTCAAGTTACTCTTACACATTGCAACGGTTCTATCTCAC
CAGCTACAATCCTCCTGCTCTAGCTCTATCTGTTTGTTCATTAGTCATCAATGCGTGCTATTTTC
GCCCGTTGAGCTTTGCGTTCGGTGGTTTGGGCGACTTCAAGAGATTAGTGACGATTTTCTTGGTC
TTGGACGGCGGATGGCGGCCGGGAGCGGGTGTGGGTGCCTGGACCGGCGGCGGGAGCTCCCCGTC
GTACCCGGGTGCGGGCTCCGACACCTCCTCGGCCTCGGAGATCGCCTCGTGGTATGTGGGCACCT
CCAGCGGCGTCCGCACCTTTTCCCCCGACACAGGGATGTCAAAGTACCCCAGCGGCTCGTTCTGC
GAGTCGAGCGACACGTCCTCGGTGTGGCGGTTGTACACCGGCGGCGGCAGCAAGTTGCGGTCCGC
CGCCAGCGTCACCTCGGCCCCGGGACTCAACTTGCGGAAAAGCGG
Found at i:52528 original size:48 final size:48
Alignment explanation
Indices: 52363--52563 Score: 199
Period size: 48 Copynumber: 4.3 Consensus size: 48
52353 GCATTGACTG
52363 CAAAGTGGCTGCAAATAAAA---GCTGCAAAT-AAA--GCTGCAAA-T
1 CAAAGTGGCTGCAAATAAAAGTGGCTGCAAATAAAAGTGCTGCAAATT
* *
52404 AAAAGTGGCTGCAAATAAAAGTGGCTGCAAATAGAAGTGGCTGCAAA-T
1 CAAAGTGGCTGCAAATAAAAGTGGCTGCAAATAAAAGT-GCTGCAAATT
*
52452 AAAAGTGGCTGCAAATAAAAGTGGCTGCAAATAAAAGTGC-GCAAATT
1 CAAAGTGGCTGCAAATAAAAGTGGCTGCAAATAAAAGTGCTGCAAATT
*** * ***
52499 CCAAAGTGGCTGCAAATCTCAGTGTCTGCAAATTTCAGTGTCTGCAAATTT
1 -CAAAGTGGCTGCAAATAAAAGTGGCTGCAAATAAAAGTG-CTGCAAA-TT
52550 C-AA-TGGCTGCAAAT
1 CAAAGTGGCTGCAAAT
52564 TTCAATGGCT
Statistics
Matches: 137, Mismatches: 11, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
41 19 0.14
44 9 0.07
45 2 0.01
46 5 0.04
47 3 0.02
48 88 0.64
49 3 0.02
50 6 0.04
51 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (48 bp):
CAAAGTGGCTGCAAATAAAAGTGGCTGCAAATAAAAGTGCTGCAAATT
Left flanking sequence: Indices 51863 -- 52362
AATTTCGGTTAGCTAGATGGTGCCACGGCATCCCCAATGCTCCCGACAAATATGAAGCCTTCCGC
ATGTTGGCAGCCTTTGTGGGGGGAAGACAACTCGTGGAAACCTGTTGGTGCCCGGTGTGTGAAAT
CTGGGAACCCAAAACAGAGGAAACGCTGAAACTCACCGGGCACCAGTTACCCGTGCACCACTGTA
AAATGGGGAGGAATGAAACGTATCGTCGGGTGGGGACGCTAAGTCTTGTTGCGAAGTTTTGCGAG
CGTCAGGCCGAGGATCGGTACGTATGGCCCAAACTATGAGACCCGGGCAGCCGCTGAAGAAATAC
AAGTGATCAATTGATGAAACAAAGTAGTAGTAGAAAATACCCGTAAGCCCACGTGAGGGCCCACA
TGAAGGAGTTGGGAGGGACCGCCTGCGGTTCCCCGGCTTCCACCGCCTTCTCTATGCCCTCTTCA
TCTGCTCCCGTTTTTCCGCTTTCCTCCGGTGTGGTGCATTGACTG
Right flanking sequence: Indices 52564 -- 53063
TTCAATGGCTGCAAATTTGCAGATTTCAAAATGGTTGCAAATGTCAAGTTACTCTTACACATTGC
AACGGTTCTATCTCACCAGCTACAATCCTCCTGCTCTAGCTCTATCTGTTTGTTCATTAGTCATC
AATGCGTGCTATTTTCGCCCGTTGAGCTTTGCGTTCGGTGGTTTGGGCGACTTCAAGAGATTAGT
GACGATTTTCTTGGTCTTGGACGGCGGATGGCGGCCGGGAGCGGGTGTGGGTGCCTGGACCGGCG
GCGGGAGCTCCCCGTCGTACCCGGGTGCGGGCTCCGACACCTCCTCGGCCTCGGAGATCGCCTCG
TGGTATGTGGGCACCTCCAGCGGCGTCCGCACCTTTTCCCCCGACACAGGGATGTCAAAGTACCC
CAGCGGCTCGTTCTGCGAGTCGAGCGACACGTCCTCGGTGTGGCGGTTGTACACCGGCGGCGGCA
GCAAGTTGCGGTCCGCCGCCAGCGTCACCTCGGCCCCGGGACTCA
Found at i:55039 original size:14 final size:14
Alignment explanation
Indices: 55020--55050 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
55010 TGGGAAGGTT
*
55020 GGGCGAAGAGGGTA
1 GGGCGAAGAGAGTA
55034 GGGCGAAGAGAGTA
1 GGGCGAAGAGAGTA
55048 GGG
1 GGG
55051 AGTAGAGGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.58, T:0.06
Consensus pattern (14 bp):
GGGCGAAGAGAGTA
Left flanking sequence: Indices 54520 -- 55019
GAAGTGGGCCTAGCCGGTTTTTTCTTGGGACTTTGGCCGGGGGCGTTGCTGTTTGGGGTTTCTTT
TGCTTCAGCCGCATGCACCGTTCGGTTGCGGATCGGGCCCGGGGCCGGTGACGGGTAACGTTCGG
TGCCGCCAGCGAACCCGCGAACAAACCGGGGTGCAACCGAACCGTGAGTTTCCGGCGTAGACGAC
CCGTTGGCCCTCAGGGCGTGTTCTGCCTGCATCTGTGCCATGCACATGTGGTCCCAGATACGGAA
CGCGACAACCGTTGGTGCGAGTGATAAGCGGGGTAGGCGGTGGTGGCGGGATGGCGGAGCGATTG
GGGGTAGCCAGGTGGGTTGGTGGGTAGTGGGGGTGGCGGTGGAGGTGTTCTACGGGGCTGGTGGG
CGTTTAATGGGCGGGAGCTCGCTGGGTGGGGGTCCGAAGCCTGTGCGTGTTTCACCTGAATATTT
TTTAAACGTGGTCGGAAGCGGCAAATTGGAGGCGATGGGAAGGTT
Right flanking sequence: Indices 55051 -- 55550
AGTAGAGGCGGTTGGGGGGTATTTTTTGTGGTAAGAGAAGGTGTTCTGATTTTTTGTTTCTTTTT
GGCATCTTTCTATTTGGTGGTGAGTCGGTGTTCATTGCAAATAGCCGGTTTTGTGGCCTTCTGCC
CGGATTCGTGTCGCTCTTGGCGATCTCGTCTGTGGAAATGTCACGTCGCATTGGGTTGGGTCAAT
TGGGGGGTAATTTGCCGAGTGCTGTGGGTGTGTTGGGTGGTTGGGAAGTCTATATCGGCCTTGGC
CTAGAAGAGGTTGGGTATTTATTCTGATTACAACTGGTGACTGATAAAAAGGGCTGTGATTTACC
AGTAGTCCCGGTTGCAATAGGGCCAAAGAACGTCACCGCAAGCAGCTCATAATATTGCTCAACTT
GCACGTCCAACGTCATACAGCTTTATTCCCAAAGTGCGATGGATATTACCCCTTTTGATCGTCGC
CAGAAACACCACCCAGAACCCCGGAAATAGACAACAGCCACCCTA
Found at i:55622 original size:12 final size:12
Alignment explanation
Indices: 55593--55623 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
55583 CCTTCTCTCC
55593 CACCCCTTATCG
1 CACCCCTTATCG
55605 CA-CCCTTATCG
1 CACCCCTTATCG
55616 CACCCCTT
1 CACCCCTT
55624 TGTCTCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.16, C:0.52, G:0.06, T:0.26
Consensus pattern (12 bp):
CACCCCTTATCG
Left flanking sequence: Indices 55093 -- 55592
GTTCTGATTTTTTGTTTCTTTTTGGCATCTTTCTATTTGGTGGTGAGTCGGTGTTCATTGCAAAT
AGCCGGTTTTGTGGCCTTCTGCCCGGATTCGTGTCGCTCTTGGCGATCTCGTCTGTGGAAATGTC
ACGTCGCATTGGGTTGGGTCAATTGGGGGGTAATTTGCCGAGTGCTGTGGGTGTGTTGGGTGGTT
GGGAAGTCTATATCGGCCTTGGCCTAGAAGAGGTTGGGTATTTATTCTGATTACAACTGGTGACT
GATAAAAAGGGCTGTGATTTACCAGTAGTCCCGGTTGCAATAGGGCCAAAGAACGTCACCGCAAG
CAGCTCATAATATTGCTCAACTTGCACGTCCAACGTCATACAGCTTTATTCCCAAAGTGCGATGG
ATATTACCCCTTTTGATCGTCGCCAGAAACACCACCCAGAACCCCGGAAATAGACAACAGCCACC
CTACATACACCCCAGCACACCGCTCTACATTACCGCCTTCTCTCC
Right flanking sequence: Indices 55624 -- 56123
TGTCTCTTCTCCCCTTTCCTTCCCTCGTGCTCACCCACCCATCTCTTTTCGCTCATCGCAGGCAT
CGCGACTCATCACCACACCATGAGACAGAAGCGAGCCAAGAGCTACCGCAAGCACATGGCGGTGT
ACGTGCACACCTTCAAGTTCCGCGAGCCCTACCAGACGATTGTCGACCTGGGCCTCGTCGAGCTC
TGCCACAAGAACCGCTACGACCTCGCCAAGGGCCTCGAGCGCACCGTCCAGGCCCCGATCAAGGT
GATGATCACCCAGTGCCTGATGGAGGAGCTCTACAAGACCAAGAACCAGGAGGCGATTGACATTG
CCAAGCGGTTTGAGCGCAGACGGTGCAACCACAAGCCCGCGGTGGGCGGCGACGAGTGTATCGAG
CTGATCACCGCAGTCAACGGGGCCAACAAGTTCCGGTACGTCATCGCGGCCCAGCTGGAGGAGTT
GCGTCGGTCGTTGCGCCAGGTGCCCGGGGTGCCGTTGATCTTTAT
Found at i:56422 original size:15 final size:15
Alignment explanation
Indices: 56404--56443 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
56394 GGGTGACAAC
56404 GAGAACGGTGAGAAT
1 GAGAACGGTGAGAAT
*
56419 GAGAAGGGTGAGAAT
1 GAGAACGGTGAGAAT
*
56434 GAGAATGGTG
1 GAGAACGGTG
56444 GTAACGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.38, C:0.03, G:0.45, T:0.15
Consensus pattern (15 bp):
GAGAACGGTGAGAAT
Left flanking sequence: Indices 55904 -- 56403
TGGAGGAGCTCTACAAGACCAAGAACCAGGAGGCGATTGACATTGCCAAGCGGTTTGAGCGCAGA
CGGTGCAACCACAAGCCCGCGGTGGGCGGCGACGAGTGTATCGAGCTGATCACCGCAGTCAACGG
GGCCAACAAGTTCCGGTACGTCATCGCGGCCCAGCTGGAGGAGTTGCGTCGGTCGTTGCGCCAGG
TGCCCGGGGTGCCGTTGATCTTTATGAAACAGCTGGTGATGGTGATGGAGCACATGCTGGACGCC
ACCAAGAGACAGAACGAGGCCACCGAGGCCGCCAAGTTGACGCTGGGGCTCAATGCCGTGGACAC
CGGGGACGACGGTCCTGCGCACAAGAAGCGCAAGGCCAAGGGCCCCAACCCGTTGAGTGTGAAGA
AGGCCAAGACCAGTGAGACGAGCGAGGAGCCGTCGCAGAAGAAGACCCGCCGGAAACGGGGAAAG
AAGAAAGAGGGCGAGGATGGCGAGGATGGGGATGAGGGTGACAAC
Right flanking sequence: Indices 56444 -- 56943
GTAACGAAAAAGGTGACGACAATGGTGACAACGAAAATGGTCAGGACCACGAGCAGGACCACGAG
ACAAACACCGACGCTCCGGCTGTGCCTGAGCCTGAGGCTGACTCTGAATAATTTGCATAGGTAAT
ACACTGGGATTGAACGGTAGACACTATAGAGCACCGTGTAGAGCACCGTGTGGAACACCGTGTAG
AACACCCAGATCCGTGTAGCCCACGAAACGTTCGCTTAGACTACAGACCACTTCGCTTTGTGCCA
CGCTTTGTGCCACATTGCGCCACGCGGTACGCGTCGGTGGCGTGTTTGATGTTTCAGATCTTGTT
TCACCTATCACTTCTCACTCACCGATGATCTGCGGTTACTCACGACTAGCAGACTAGCCATGCAC
ACCAACGCACCACCCCCACGCCACCTCCACGCCAATTATCACCTGTCACCGCGACGCGTCCTCGC
TTAGCCCTATTGTGTCAGCTCGTGGTTGCTCTGTTGGTAACACAG
Found at i:56617 original size:12 final size:12
Alignment explanation
Indices: 56600--56644 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
56590 GTAGACACTA
*
56600 TAGAGCACCGTG
1 TAGAACACCGTG
*
56612 TAGAGCACCGTG
1 TAGAACACCGTG
*
56624 TGGAACACCGTG
1 TAGAACACCGTG
56636 TAGAACACC
1 TAGAACACC
56645 CAGATCCGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.29, C:0.27, G:0.29, T:0.16
Consensus pattern (12 bp):
TAGAACACCGTG
Left flanking sequence: Indices 56100 -- 56599
GCCCGGGGTGCCGTTGATCTTTATGAAACAGCTGGTGATGGTGATGGAGCACATGCTGGACGCCA
CCAAGAGACAGAACGAGGCCACCGAGGCCGCCAAGTTGACGCTGGGGCTCAATGCCGTGGACACC
GGGGACGACGGTCCTGCGCACAAGAAGCGCAAGGCCAAGGGCCCCAACCCGTTGAGTGTGAAGAA
GGCCAAGACCAGTGAGACGAGCGAGGAGCCGTCGCAGAAGAAGACCCGCCGGAAACGGGGAAAGA
AGAAAGAGGGCGAGGATGGCGAGGATGGGGATGAGGGTGACAACGAGAACGGTGAGAATGAGAAG
GGTGAGAATGAGAATGGTGGTAACGAAAAAGGTGACGACAATGGTGACAACGAAAATGGTCAGGA
CCACGAGCAGGACCACGAGACAAACACCGACGCTCCGGCTGTGCCTGAGCCTGAGGCTGACTCTG
AATAATTTGCATAGGTAATACACTGGGATTGAACGGTAGACACTA
Right flanking sequence: Indices 56645 -- 57144
CAGATCCGTGTAGCCCACGAAACGTTCGCTTAGACTACAGACCACTTCGCTTTGTGCCACGCTTT
GTGCCACATTGCGCCACGCGGTACGCGTCGGTGGCGTGTTTGATGTTTCAGATCTTGTTTCACCT
ATCACTTCTCACTCACCGATGATCTGCGGTTACTCACGACTAGCAGACTAGCCATGCACACCAAC
GCACCACCCCCACGCCACCTCCACGCCAATTATCACCTGTCACCGCGACGCGTCCTCGCTTAGCC
CTATTGTGTCAGCTCGTGGTTGCTCTGTTGGTAACACAGTGGCACCCGGAAACCACGCAGTAACC
ACACCTCGAGAAAAACGTACGAAACCGCGACCGAGCCATGTGTGAAAACCAGCAAAACTACCGCT
ACAAACCCGCTACTACCTCAGCCCGACCCCCCTCATCACCTACCCCCGCGCTACCGACCATTATT
CCCCCACAGCCTCAGCTTTGTCCTTCACCCAACAGAACAAAGAAA
Found at i:56709 original size:12 final size:12
Alignment explanation
Indices: 56692--56716 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
56682 CAGACCACTT
56692 CGCTTTGTGCCA
1 CGCTTTGTGCCA
56704 CGCTTTGTGCCA
1 CGCTTTGTGCCA
56716 C
1 C
56717 ATTGCGCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.36, G:0.24, T:0.32
Consensus pattern (12 bp):
CGCTTTGTGCCA
Left flanking sequence: Indices 56192 -- 56691
CCGCCAAGTTGACGCTGGGGCTCAATGCCGTGGACACCGGGGACGACGGTCCTGCGCACAAGAAG
CGCAAGGCCAAGGGCCCCAACCCGTTGAGTGTGAAGAAGGCCAAGACCAGTGAGACGAGCGAGGA
GCCGTCGCAGAAGAAGACCCGCCGGAAACGGGGAAAGAAGAAAGAGGGCGAGGATGGCGAGGATG
GGGATGAGGGTGACAACGAGAACGGTGAGAATGAGAAGGGTGAGAATGAGAATGGTGGTAACGAA
AAAGGTGACGACAATGGTGACAACGAAAATGGTCAGGACCACGAGCAGGACCACGAGACAAACAC
CGACGCTCCGGCTGTGCCTGAGCCTGAGGCTGACTCTGAATAATTTGCATAGGTAATACACTGGG
ATTGAACGGTAGACACTATAGAGCACCGTGTAGAGCACCGTGTGGAACACCGTGTAGAACACCCA
GATCCGTGTAGCCCACGAAACGTTCGCTTAGACTACAGACCACTT
Right flanking sequence: Indices 56717 -- 57216
ATTGCGCCACGCGGTACGCGTCGGTGGCGTGTTTGATGTTTCAGATCTTGTTTCACCTATCACTT
CTCACTCACCGATGATCTGCGGTTACTCACGACTAGCAGACTAGCCATGCACACCAACGCACCAC
CCCCACGCCACCTCCACGCCAATTATCACCTGTCACCGCGACGCGTCCTCGCTTAGCCCTATTGT
GTCAGCTCGTGGTTGCTCTGTTGGTAACACAGTGGCACCCGGAAACCACGCAGTAACCACACCTC
GAGAAAAACGTACGAAACCGCGACCGAGCCATGTGTGAAAACCAGCAAAACTACCGCTACAAACC
CGCTACTACCTCAGCCCGACCCCCCTCATCACCTACCCCCGCGCTACCGACCATTATTCCCCCAC
AGCCTCAGCTTTGTCCTTCACCCAACAGAACAAAGAAATGCAAGGGTTTAGTGCGCGCATGCACC
TGCGTTACCCCCGATCAGCCAGCAAAGTGGGCCCACCCAGGCCCC
Found at i:58482 original size:19 final size:21
Alignment explanation
Indices: 58459--58510 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
58449 GTGTTGGTGG
58459 GTGTTTGTACGTAGTGTGT-T
1 GTGTTTGTACGTAGTGTGTAT
* *
58479 -TGTTTGTACGTGGTTTGTAT
1 GTGTTTGTACGTAGTGTGTAT
58499 GTGTTTGTACGT
1 GTGTTTGTACGT
58511 GTTTTACCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 16 0.57
20 1 0.04
21 11 0.39
ACGTcount: A:0.10, C:0.06, G:0.33, T:0.52
Consensus pattern (21 bp):
GTGTTTGTACGTAGTGTGTAT
Left flanking sequence: Indices 57959 -- 58458
CCCAGGCACTGGGCGGGCTCAAAGACATCTTTGGCCAGCCGATCCAGCAGCAGGATATGAGCAAC
CCCACCCGATCCCGCAACGAGCGCCCCCTTGACACCATCCGGGGGTTCGAGTACGCTATCACCGG
TGATCTCGGGTACCGTGACCAGTTGGAGACCACGCGGTTGGGGTGGGGGTTCCACGAAGACTTCC
ACTACGCCAACTTGAACGAGAGCGCGCGTGCTGCCACCTCCGCAGGTCCGGGAGGGGCAGCGGAC
ATGGGGTTCGCCCGGCCCCAGTTTGCCGAGCAGGCGATGTACCAGGCAGGGAACTATCTGGCGCT
GAGTTTGAAGGAGGCGGGAGGTAAAAAGAAGAAGAAGAAGGGAGGGTTGTTTGGCCGCAAGAAGT
GATTTTATGTAACGCTGTACGAGTATATGTTTTGGGAAAAAGTGTAGGTGGGGCTAGGTGATAGG
TTTGGTGTGTTTGGGTGTGTGTTAGTGTGTTGGTTGTGTTGGTGG
Right flanking sequence: Indices 58511 -- 59010
GTTTTACCGTTTTACTGTTTTACTGTCTCACTGTCTCACTTCGTTTGTACGTGAATTGTACGTGT
TGTACGTAAGCCTGTGAAAAATTCCCTCGGACGGGATAACGCGTCTCCGCGTGGATCGCGGGGAA
GACAATGACACCGCGCAAAATCGCCTGTTGTGTGGTGGCGTGTGTGTGCGAGGGTGTTTTAGACT
CTGTTTCACCTTCCCGCCCCCGCTTGCGTGGCGCGGTCATCTAGCGTCGCATTTGATCGCTGCGT
AAGTACGCTATTAGACGGGAACGGAAGGAGCAGTGGGGTGGAGGAGAGGGGACACGAACAGGGGT
GGTGGGACACGCGACGAAGAAGGCGTGATGGAGGGTGGAGAGTAGGTGGAAAGTGGGTAAAAGGT
GGGAAGTGGATAAGGTGGGCAAAGTGTGGTTTAAATGGGAAACTCCAAAATGGTGGCTCTGAAGT
TGGCGAGTATACCCACGCGTTGACTCAGAGAGTGTTCAGGTCGTT
Found at i:58506 original size:10 final size:10
Alignment explanation
Indices: 58479--58514 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
58469 GTAGTGTGTT
58479 TGTTTGTACG
1 TGTTTGTACG
*
58489 TGGTTTGTATG
1 T-GTTTGTACG
58500 TGTTTGTACG
1 TGTTTGTACG
58510 TGTTT
1 TGTTT
58515 TACCGTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.08, C:0.06, G:0.31, T:0.56
Consensus pattern (10 bp):
TGTTTGTACG
Left flanking sequence: Indices 57979 -- 58478
AAAGACATCTTTGGCCAGCCGATCCAGCAGCAGGATATGAGCAACCCCACCCGATCCCGCAACGA
GCGCCCCCTTGACACCATCCGGGGGTTCGAGTACGCTATCACCGGTGATCTCGGGTACCGTGACC
AGTTGGAGACCACGCGGTTGGGGTGGGGGTTCCACGAAGACTTCCACTACGCCAACTTGAACGAG
AGCGCGCGTGCTGCCACCTCCGCAGGTCCGGGAGGGGCAGCGGACATGGGGTTCGCCCGGCCCCA
GTTTGCCGAGCAGGCGATGTACCAGGCAGGGAACTATCTGGCGCTGAGTTTGAAGGAGGCGGGAG
GTAAAAAGAAGAAGAAGAAGGGAGGGTTGTTTGGCCGCAAGAAGTGATTTTATGTAACGCTGTAC
GAGTATATGTTTTGGGAAAAAGTGTAGGTGGGGCTAGGTGATAGGTTTGGTGTGTTTGGGTGTGT
GTTAGTGTGTTGGTTGTGTTGGTGGGTGTTTGTACGTAGTGTGTT
Right flanking sequence: Indices 58515 -- 59014
TACCGTTTTACTGTTTTACTGTCTCACTGTCTCACTTCGTTTGTACGTGAATTGTACGTGTTGTA
CGTAAGCCTGTGAAAAATTCCCTCGGACGGGATAACGCGTCTCCGCGTGGATCGCGGGGAAGACA
ATGACACCGCGCAAAATCGCCTGTTGTGTGGTGGCGTGTGTGTGCGAGGGTGTTTTAGACTCTGT
TTCACCTTCCCGCCCCCGCTTGCGTGGCGCGGTCATCTAGCGTCGCATTTGATCGCTGCGTAAGT
ACGCTATTAGACGGGAACGGAAGGAGCAGTGGGGTGGAGGAGAGGGGACACGAACAGGGGTGGTG
GGACACGCGACGAAGAAGGCGTGATGGAGGGTGGAGAGTAGGTGGAAAGTGGGTAAAAGGTGGGA
AGTGGATAAGGTGGGCAAAGTGTGGTTTAAATGGGAAACTCCAAAATGGTGGCTCTGAAGTTGGC
GAGTATACCCACGCGTTGACTCAGAGAGTGTTCAGGTCGTTCAAA
Found at i:59627 original size:10 final size:10
Alignment explanation
Indices: 59612--59638 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
59602 ACCACTACAG
59612 CCACCTCTGA
1 CCACCTCTGA
59622 CCACCTCTGA
1 CCACCTCTGA
59632 CCACCTC
1 CCACCTC
59639 CCCTCATTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.56, G:0.07, T:0.19
Consensus pattern (10 bp):
CCACCTCTGA
Left flanking sequence: Indices 59112 -- 59611
GTCGTATAACTACGAGCCACGCTAATAACCAAAAAAGGCAAAATAGACTCAATGGCACGCCTACC
AAGTGCTCCCTACAATTACATGTGGCGAGATCGCCGGGGGTGGCTTAAACGTGCACGGCGATCCG
CGAGACACACCCGGGCTGCTGAACACCACTTTGCGTAGTTCCATCCCGCGGTACGCCGTAGCGTA
GACTAGTGCCCGACCATCTGTGGTGTCCACCCAAAACACCCGCCACTCTCTCTACGCTTCTTCTC
ACGGCCACACCGCCCGGTGCCCCTGTGGGGTAGATCCACCCCTGGAGTCGATCCCTGCCCTCCAC
TTCCCGTTTCGGTAGCTTGCATCCACGTGGATAACCCCAGTGGACCACCCGGTGCTTCCCCTCGT
CATGAGCCACCTTCCTAAAACAAAGGCTCGGCTAAGCCAAACAATACAACGTCTCGGCTGCGCCT
GTCGTATCACGCCCACCAAGGTAAGTGGTGCCCGAACCACTACAG
Right flanking sequence: Indices 59639 -- 60138
CCCTCATTCCTCTGCTCTCGTCACAAACCGTGTTTCAGACTCGTACCCCATACATCCGCCCAAAC
ACCACCAGGCGCCCACCTGTACCTACCAACTACCTACCACTTACACAATCAAACCCTTACTAGAA
CCCACACCGCTAAACCACCCCCCTCCATCGCCGCCCGACAATGCTCCGAAACATTCCGACGTACC
TCCACCCGCACTCTCCATTATGCACCTTGACGATGTCCTGTCGATCCCCACGCGTAGACGTACCC
ACCCAAAACACGGGCAAACACCCGATCGCCCACACAAACCCACCCACCCCACCAACCCCCGCCCG
TAAACCACCCCGTAGCCCCGCCACCAAGCCCGCCCAGCCCCCACCGTGGTCCCCGGTACCTGCGT
GCGGCTCGGTTTCACAGTGGAATGCGTGTTGAAACACGTCGCATTCACCGGCAAAGTTTCGAAAC
ACGCCCAGCCATGGACACCGAGATGTTGGAGCCTCCGCGCCAGGT
Found at i:67956 original size:18 final size:19
Alignment explanation
Indices: 67933--68015 Score: 61
Period size: 18 Copynumber: 4.6 Consensus size: 19
67923 CGTCGTCGCC
67933 GCCAGCACCAGGGCCAG-A
1 GCCAGCACCAGGGCCAGCA
67951 GCCAG---CAGGGCCAGCA
1 GCCAGCACCAGGGCCAGCA
** *
67967 GGGCCAGCACCAGCACCAGTA
1 --GCCAGCACCAGGGCCAGCA
*
67988 -CCAGCACCAAGGCCAGCA
1 GCCAGCACCAGGGCCAGCA
*
68006 -CCAGCGCCAG
1 GCCAGCACCAG
68016 CACCGTAGTT
Statistics
Matches: 50, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
15 9 0.18
16 1 0.02
18 32 0.64
21 8 0.16
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.01
Consensus pattern (19 bp):
GCCAGCACCAGGGCCAGCA
Left flanking sequence: Indices 67433 -- 67932
TACCACCCCTACCACAGCTCCCCAGACAGTAAGCGTGCTAGTCACACCACGATTACCTTACCGTT
CACCACCCTACTCTTCACCCTACGCTTCACCTTTTCTTCACCACCACCACCTCTTCACCACCCTC
GTCCTATTATTATCTGTATTCAAGCATTATCTACATCCTAAGCATTGTCCAACAAGTAGTTGGTG
GCCTCGGCCACATCCCACTGCTGCTTGCGCAACGCCTCGAGCGAGGTGGAGTAGTCAAACCCCAT
CCCCACGAGCTCCTGCACCGACGCCTCCTGGTCAGTGGAGAGCGGCTGGTCGGAGCTGGTCTTGG
AAGGCACGGACCCACCAGAGGGAACGGTGGGGGTGCCCGTAGGGGTCCCCGCGGGGGAACCAGCG
CCCACAATGCCAGCAGCACCGGTGGCAGGCGCAGAGGTGGGCTCGCGAGTGGCGTCCTCGAGCTT
GGCGTTGCCAAACCCGGCAAAGAGCTGCTCCCACTCGTCGTCGCC
Right flanking sequence: Indices 68016 -- 68515
CACCGTAGTTGGCAACACCCGACACCGAGCGGGACGGGCCCGACCCAGGCTCGTTGGTGAACTCG
TTCGAGAACGAAAAGTCGTTCTCGGGGAACTCCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAA
GTTGTCAAAGTCGTCAAACATGTCGTCCTTGGCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGA
ACTGGGCGTCAAAGTCGTCGAACGCCAGCTTGCCCTGCGGCAGCTGCGACCGCTGAAACAGCTCC
ACCGCGTCGTCAAACTTCTCGCCGCGGGCCTCCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTC
GCGGATCGGGGGGAACTCCTCGTCGATGCGGGACCGGGCGGCAGCAGCGCCAGCAGCAGCGCCAA
CGCCAGCAGCAGCGCCAACGCCAGCTCCAGCTCCACCACCAACGCCAGCTCCAGCTCCACCACCA
ACACCACCAGCTCCACCAGCTCCACCAACACCACCACCAACACCA
Found at i:67965 original size:9 final size:9
Alignment explanation
Indices: 67951--67975 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
67941 CAGGGCCAGA
67951 GCCAGCAGG
1 GCCAGCAGG
67960 GCCAGCAGG
1 GCCAGCAGG
67969 GCCAGCA
1 GCCAGCA
67976 CCAGCACCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.36, G:0.40, T:0.00
Consensus pattern (9 bp):
GCCAGCAGG
Left flanking sequence: Indices 67451 -- 67950
TCCCCAGACAGTAAGCGTGCTAGTCACACCACGATTACCTTACCGTTCACCACCCTACTCTTCAC
CCTACGCTTCACCTTTTCTTCACCACCACCACCTCTTCACCACCCTCGTCCTATTATTATCTGTA
TTCAAGCATTATCTACATCCTAAGCATTGTCCAACAAGTAGTTGGTGGCCTCGGCCACATCCCAC
TGCTGCTTGCGCAACGCCTCGAGCGAGGTGGAGTAGTCAAACCCCATCCCCACGAGCTCCTGCAC
CGACGCCTCCTGGTCAGTGGAGAGCGGCTGGTCGGAGCTGGTCTTGGAAGGCACGGACCCACCAG
AGGGAACGGTGGGGGTGCCCGTAGGGGTCCCCGCGGGGGAACCAGCGCCCACAATGCCAGCAGCA
CCGGTGGCAGGCGCAGAGGTGGGCTCGCGAGTGGCGTCCTCGAGCTTGGCGTTGCCAAACCCGGC
AAAGAGCTGCTCCCACTCGTCGTCGCCGCCAGCACCAGGGCCAGA
Right flanking sequence: Indices 67976 -- 68475
CCAGCACCAGTACCAGCACCAAGGCCAGCACCAGCGCCAGCACCGTAGTTGGCAACACCCGACAC
CGAGCGGGACGGGCCCGACCCAGGCTCGTTGGTGAACTCGTTCGAGAACGAAAAGTCGTTCTCGG
GGAACTCCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGTTGTCAAAGTCGTCAAACATGTCG
TCCTTGGCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGAACTGGGCGTCAAAGTCGTCGAACGC
CAGCTTGCCCTGCGGCAGCTGCGACCGCTGAAACAGCTCCACCGCGTCGTCAAACTTCTCGCCGC
GGGCCTCCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTCGCGGATCGGGGGGAACTCCTCGTCG
ATGCGGGACCGGGCGGCAGCAGCGCCAGCAGCAGCGCCAACGCCAGCAGCAGCGCCAACGCCAGC
TCCAGCTCCACCACCAACGCCAGCTCCAGCTCCACCACCAACACC
Found at i:67981 original size:6 final size:6
Alignment explanation
Indices: 67970--68019 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
67960 GCCAGCAGGG
* * *
67970 CCAGCA CCAGCA CCAGTA CCAGCA CCAAG-G CCAGCA CCAGCG CCAGCA
1 CCAGCA CCAGCA CCAGCA CCAGCA CC-AGCA CCAGCA CCAGCA CCAGCA
68018 CC
1 CC
68020 GTAGTTGGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
5 2 0.06
6 32 0.89
7 2 0.06
ACGTcount: A:0.30, C:0.48, G:0.20, T:0.02
Consensus pattern (6 bp):
CCAGCA
Left flanking sequence: Indices 67470 -- 67969
CTAGTCACACCACGATTACCTTACCGTTCACCACCCTACTCTTCACCCTACGCTTCACCTTTTCT
TCACCACCACCACCTCTTCACCACCCTCGTCCTATTATTATCTGTATTCAAGCATTATCTACATC
CTAAGCATTGTCCAACAAGTAGTTGGTGGCCTCGGCCACATCCCACTGCTGCTTGCGCAACGCCT
CGAGCGAGGTGGAGTAGTCAAACCCCATCCCCACGAGCTCCTGCACCGACGCCTCCTGGTCAGTG
GAGAGCGGCTGGTCGGAGCTGGTCTTGGAAGGCACGGACCCACCAGAGGGAACGGTGGGGGTGCC
CGTAGGGGTCCCCGCGGGGGAACCAGCGCCCACAATGCCAGCAGCACCGGTGGCAGGCGCAGAGG
TGGGCTCGCGAGTGGCGTCCTCGAGCTTGGCGTTGCCAAACCCGGCAAAGAGCTGCTCCCACTCG
TCGTCGCCGCCAGCACCAGGGCCAGAGCCAGCAGGGCCAGCAGGG
Right flanking sequence: Indices 68020 -- 68519
GTAGTTGGCAACACCCGACACCGAGCGGGACGGGCCCGACCCAGGCTCGTTGGTGAACTCGTTCG
AGAACGAAAAGTCGTTCTCGGGGAACTCCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGTTG
TCAAAGTCGTCAAACATGTCGTCCTTGGCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGAACTG
GGCGTCAAAGTCGTCGAACGCCAGCTTGCCCTGCGGCAGCTGCGACCGCTGAAACAGCTCCACCG
CGTCGTCAAACTTCTCGCCGCGGGCCTCCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTCGCGG
ATCGGGGGGAACTCCTCGTCGATGCGGGACCGGGCGGCAGCAGCGCCAGCAGCAGCGCCAACGCC
AGCAGCAGCGCCAACGCCAGCTCCAGCTCCACCACCAACGCCAGCTCCAGCTCCACCACCAACAC
CACCAGCTCCACCAGCTCCACCAACACCACCACCAACACCACCAC
Found at i:68411 original size:18 final size:18
Alignment explanation
Indices: 68388--68430 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
68378 GCGGCAGCAG
68388 CGCCAGCAGCAGCGCCAA
1 CGCCAGCAGCAGCGCCAA
68406 CGCCAGCAGCAGCGCCAA
1 CGCCAGCAGCAGCGCCAA
68424 CGCCAGC
1 CGCCAGC
68431 TCCAGCTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.26, C:0.47, G:0.28, T:0.00
Consensus pattern (18 bp):
CGCCAGCAGCAGCGCCAA
Left flanking sequence: Indices 67888 -- 68387
GGCGTTGCCAAACCCGGCAAAGAGCTGCTCCCACTCGTCGTCGCCGCCAGCACCAGGGCCAGAGC
CAGCAGGGCCAGCAGGGCCAGCACCAGCACCAGTACCAGCACCAAGGCCAGCACCAGCGCCAGCA
CCGTAGTTGGCAACACCCGACACCGAGCGGGACGGGCCCGACCCAGGCTCGTTGGTGAACTCGTT
CGAGAACGAAAAGTCGTTCTCGGGGAACTCCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGT
TGTCAAAGTCGTCAAACATGTCGTCCTTGGCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGAAC
TGGGCGTCAAAGTCGTCGAACGCCAGCTTGCCCTGCGGCAGCTGCGACCGCTGAAACAGCTCCAC
CGCGTCGTCAAACTTCTCGCCGCGGGCCTCCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTCGC
GGATCGGGGGGAACTCCTCGTCGATGCGGGACCGGGCGGCAGCAG
Right flanking sequence: Indices 68431 -- 68930
TCCAGCTCCACCACCAACGCCAGCTCCAGCTCCACCACCAACACCACCAGCTCCACCAGCTCCAC
CAACACCACCACCAACACCACCACCAACACCACCACCAACACCACCCTCGTCACCCTCGGGCAGC
GCCTTGGCGTCCTCGCCCGTGACAAACTCAAACAGCTCGCCCGTCGACAGCCCCTTGTTCTGGTC
GTCGTCCAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTCGTCGTCCACCCGCCCGATGGTGTCGC
GGTCGCTCATGTCGTCGATGTTGTCGTCGCGCACCAGCCCGGCCGGGTTGTTCTGGACCAGCGAC
GTCAACAGGTCGGTGCGCTGGACGCCAATGGGCACGCCGGGCATGCCCACCATGCCACCGACCAC
CCCCTGCGAGTAGTGGAACTCCAGCCCCGACGGCAGCGTGATGGGGGTCTCGGTGTCGTCGTGCT
TGTCGGAGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGGGAGCGT
Found at i:68435 original size:24 final size:24
Alignment explanation
Indices: 68420--68541 Score: 91
Period size: 24 Copynumber: 5.0 Consensus size: 24
68410 AGCAGCAGCG
*
68420 CCAACGCCAGCTCCAGCTCCACCA
1 CCAACGCCAGCTCCAGCACCACCA
*
68444 CCAACGCCAGCTCCAGCTCCACCA
1 CCAACGCCAGCTCCAGCACCACCA
* * * *
68468 CCAACACCACCAGCTCCACCAGCTCCA
1 CC-A-A-CGCCAGCTCCAGCACCACCA
* * * *
68495 CCAACACCACCACCAACACCACCA
1 CCAACGCCAGCTCCAGCACCACCA
* * * *
68519 CCAACACCACCACCAACACCACC
1 CCAACGCCAGCTCCAGCACCACC
68542 CTCGTCACCC
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
24 64 0.75
25 2 0.02
26 2 0.02
27 17 0.20
ACGTcount: A:0.32, C:0.57, G:0.07, T:0.05
Consensus pattern (24 bp):
CCAACGCCAGCTCCAGCACCACCA
Left flanking sequence: Indices 67920 -- 68419
ACTCGTCGTCGCCGCCAGCACCAGGGCCAGAGCCAGCAGGGCCAGCAGGGCCAGCACCAGCACCA
GTACCAGCACCAAGGCCAGCACCAGCGCCAGCACCGTAGTTGGCAACACCCGACACCGAGCGGGA
CGGGCCCGACCCAGGCTCGTTGGTGAACTCGTTCGAGAACGAAAAGTCGTTCTCGGGGAACTCCT
CGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGTTGTCAAAGTCGTCAAACATGTCGTCCTTGGCC
TGCTCGGGGGTGGCCGGGGTCATGTTGTCGAACTGGGCGTCAAAGTCGTCGAACGCCAGCTTGCC
CTGCGGCAGCTGCGACCGCTGAAACAGCTCCACCGCGTCGTCAAACTTCTCGCCGCGGGCCTCCT
CCTCGGAGTCCGACTCGTCGTACTCGAGCTCGCGGATCGGGGGGAACTCCTCGTCGATGCGGGAC
CGGGCGGCAGCAGCGCCAGCAGCAGCGCCAACGCCAGCAGCAGCG
Right flanking sequence: Indices 68542 -- 69041
CTCGTCACCCTCGGGCAGCGCCTTGGCGTCCTCGCCCGTGACAAACTCAAACAGCTCGCCCGTCG
ACAGCCCCTTGTTCTGGTCGTCGTCCAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTCGTCGTCC
ACCCGCCCGATGGTGTCGCGGTCGCTCATGTCGTCGATGTTGTCGTCGCGCACCAGCCCGGCCGG
GTTGTTCTGGACCAGCGACGTCAACAGGTCGGTGCGCTGGACGCCAATGGGCACGCCGGGCATGC
CCACCATGCCACCGACCACCCCCTGCGAGTAGTGGAACTCCAGCCCCGACGGCAGCGTGATGGGG
GTCTCGGTGTCGTCGTGCTTGTCGGAGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGGGAGCGTC
GATCAGCGGGGTCTTCTTCGAGATGCCCGCGAGCCCGGCCGCGCCAGCCGCACCGGCAACGGCTC
CGGCGATGGCCATCCCGGCCCCGGAGCCAAACCCGTGCTGGTCAG
Found at i:68436 original size:18 final size:18
Alignment explanation
Indices: 68388--68436 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
68378 GCGGCAGCAG
*
68388 CGCCAGCAGCAGCGCCAA
1 CGCCAGCACCAGCGCCAA
*
68406 CGCCAGCAGCAGCGCCAA
1 CGCCAGCACCAGCGCCAA
*
68424 CGCCAGCTCCAGC
1 CGCCAGCACCAGC
68437 TCCACCACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.24, C:0.47, G:0.27, T:0.02
Consensus pattern (18 bp):
CGCCAGCACCAGCGCCAA
Left flanking sequence: Indices 67888 -- 68387
GGCGTTGCCAAACCCGGCAAAGAGCTGCTCCCACTCGTCGTCGCCGCCAGCACCAGGGCCAGAGC
CAGCAGGGCCAGCAGGGCCAGCACCAGCACCAGTACCAGCACCAAGGCCAGCACCAGCGCCAGCA
CCGTAGTTGGCAACACCCGACACCGAGCGGGACGGGCCCGACCCAGGCTCGTTGGTGAACTCGTT
CGAGAACGAAAAGTCGTTCTCGGGGAACTCCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGT
TGTCAAAGTCGTCAAACATGTCGTCCTTGGCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGAAC
TGGGCGTCAAAGTCGTCGAACGCCAGCTTGCCCTGCGGCAGCTGCGACCGCTGAAACAGCTCCAC
CGCGTCGTCAAACTTCTCGCCGCGGGCCTCCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTCGC
GGATCGGGGGGAACTCCTCGTCGATGCGGGACCGGGCGGCAGCAG
Right flanking sequence: Indices 68437 -- 68936
TCCACCACCAACGCCAGCTCCAGCTCCACCACCAACACCACCAGCTCCACCAGCTCCACCAACAC
CACCACCAACACCACCACCAACACCACCACCAACACCACCCTCGTCACCCTCGGGCAGCGCCTTG
GCGTCCTCGCCCGTGACAAACTCAAACAGCTCGCCCGTCGACAGCCCCTTGTTCTGGTCGTCGTC
CAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTCGTCGTCCACCCGCCCGATGGTGTCGCGGTCGC
TCATGTCGTCGATGTTGTCGTCGCGCACCAGCCCGGCCGGGTTGTTCTGGACCAGCGACGTCAAC
AGGTCGGTGCGCTGGACGCCAATGGGCACGCCGGGCATGCCCACCATGCCACCGACCACCCCCTG
CGAGTAGTGGAACTCCAGCCCCGACGGCAGCGTGATGGGGGTCTCGGTGTCGTCGTGCTTGTCGG
AGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGGGAGCGTCGATCA
Found at i:68470 original size:3 final size:3
Alignment explanation
Indices: 68462--68541 Score: 79
Period size: 3 Copynumber: 26.7 Consensus size: 3
68452 AGCTCCAGCT
* * * * * *
68462 CCA CCA CCA ACA CCA CCA GCT CCA CCA GCT CCA CCA ACA CCA CCA CCA
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA
* * *
68510 ACA CCA CCA CCA ACA CCA CCA CCA ACA CCA CC
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CC
68542 CTCGTCACCC
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.36, C:0.59, G:0.03, T:0.03
Consensus pattern (3 bp):
CCA
Left flanking sequence: Indices 67962 -- 68461
CAGCAGGGCCAGCACCAGCACCAGTACCAGCACCAAGGCCAGCACCAGCGCCAGCACCGTAGTTG
GCAACACCCGACACCGAGCGGGACGGGCCCGACCCAGGCTCGTTGGTGAACTCGTTCGAGAACGA
AAAGTCGTTCTCGGGGAACTCCTCGTCGCCCGCCGCCACGTCCGCGTTCTCCAAGTTGTCAAAGT
CGTCAAACATGTCGTCCTTGGCCTGCTCGGGGGTGGCCGGGGTCATGTTGTCGAACTGGGCGTCA
AAGTCGTCGAACGCCAGCTTGCCCTGCGGCAGCTGCGACCGCTGAAACAGCTCCACCGCGTCGTC
AAACTTCTCGCCGCGGGCCTCCTCCTCGGAGTCCGACTCGTCGTACTCGAGCTCGCGGATCGGGG
GGAACTCCTCGTCGATGCGGGACCGGGCGGCAGCAGCGCCAGCAGCAGCGCCAACGCCAGCAGCA
GCGCCAACGCCAGCTCCAGCTCCACCACCAACGCCAGCTCCAGCT
Right flanking sequence: Indices 68542 -- 69041
CTCGTCACCCTCGGGCAGCGCCTTGGCGTCCTCGCCCGTGACAAACTCAAACAGCTCGCCCGTCG
ACAGCCCCTTGTTCTGGTCGTCGTCCAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTCGTCGTCC
ACCCGCCCGATGGTGTCGCGGTCGCTCATGTCGTCGATGTTGTCGTCGCGCACCAGCCCGGCCGG
GTTGTTCTGGACCAGCGACGTCAACAGGTCGGTGCGCTGGACGCCAATGGGCACGCCGGGCATGC
CCACCATGCCACCGACCACCCCCTGCGAGTAGTGGAACTCCAGCCCCGACGGCAGCGTGATGGGG
GTCTCGGTGTCGTCGTGCTTGTCGGAGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGGGAGCGTC
GATCAGCGGGGTCTTCTTCGAGATGCCCGCGAGCCCGGCCGCGCCAGCCGCACCGGCAACGGCTC
CGGCGATGGCCATCCCGGCCCCGGAGCCAAACCCGTGCTGGTCAG
Found at i:68479 original size:12 final size:12
Alignment explanation
Indices: 68438--68541 Score: 109
Period size: 12 Copynumber: 8.4 Consensus size: 12
68428 AGCTCCAGCT
*
68438 CCACCACCAACG
1 CCACCACCAACA
* * * *
68450 CCAGCTCCAGCT
1 CCACCACCAACA
68462 CCACCACCAACA
1 CCACCACCAACA
*
68474 CCACCAGCTCCACCA
1 CCACCA---CCAACA
* *
68489 GCTCCACCAACA
1 CCACCACCAACA
68501 CCACCACCAACA
1 CCACCACCAACA
68513 CCACCACCAACA
1 CCACCACCAACA
68525 CCACCACCAACA
1 CCACCACCAACA
68537 CCACC
1 CCACC
68542 CTCGTCACCC
Statistics
Matches: 75, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
12 66 0.88
15 9 0.12
ACGTcount: A:0.34, C:0.58, G:0.05, T:0.04
Consensus pattern (12 bp):
CCACCACCAACA
Left flanking sequence: Indices 67938 -- 68437
CACCAGGGCCAGAGCCAGCAGGGCCAGCAGGGCCAGCACCAGCACCAGTACCAGCACCAAGGCCA
GCACCAGCGCCAGCACCGTAGTTGGCAACACCCGACACCGAGCGGGACGGGCCCGACCCAGGCTC
GTTGGTGAACTCGTTCGAGAACGAAAAGTCGTTCTCGGGGAACTCCTCGTCGCCCGCCGCCACGT
CCGCGTTCTCCAAGTTGTCAAAGTCGTCAAACATGTCGTCCTTGGCCTGCTCGGGGGTGGCCGGG
GTCATGTTGTCGAACTGGGCGTCAAAGTCGTCGAACGCCAGCTTGCCCTGCGGCAGCTGCGACCG
CTGAAACAGCTCCACCGCGTCGTCAAACTTCTCGCCGCGGGCCTCCTCCTCGGAGTCCGACTCGT
CGTACTCGAGCTCGCGGATCGGGGGGAACTCCTCGTCGATGCGGGACCGGGCGGCAGCAGCGCCA
GCAGCAGCGCCAACGCCAGCAGCAGCGCCAACGCCAGCTCCAGCT
Right flanking sequence: Indices 68542 -- 69041
CTCGTCACCCTCGGGCAGCGCCTTGGCGTCCTCGCCCGTGACAAACTCAAACAGCTCGCCCGTCG
ACAGCCCCTTGTTCTGGTCGTCGTCCAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTCGTCGTCC
ACCCGCCCGATGGTGTCGCGGTCGCTCATGTCGTCGATGTTGTCGTCGCGCACCAGCCCGGCCGG
GTTGTTCTGGACCAGCGACGTCAACAGGTCGGTGCGCTGGACGCCAATGGGCACGCCGGGCATGC
CCACCATGCCACCGACCACCCCCTGCGAGTAGTGGAACTCCAGCCCCGACGGCAGCGTGATGGGG
GTCTCGGTGTCGTCGTGCTTGTCGGAGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGGGAGCGTC
GATCAGCGGGGTCTTCTTCGAGATGCCCGCGAGCCCGGCCGCGCCAGCCGCACCGGCAACGGCTC
CGGCGATGGCCATCCCGGCCCCGGAGCCAAACCCGTGCTGGTCAG
Found at i:69055 original size:15 final size:15
Alignment explanation
Indices: 69035--69068 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
69025 AAACCCGTGC
*
69035 TGGTCAGAGGCAGGG
1 TGGTCAGAAGCAGGG
69050 TGGTCAGAAGCAGGG
1 TGGTCAGAAGCAGGG
69065 TGGT
1 TGGT
69069 TTAAGCCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.12, G:0.50, T:0.18
Consensus pattern (15 bp):
TGGTCAGAAGCAGGG
Left flanking sequence: Indices 68535 -- 69034
CACCACCCTCGTCACCCTCGGGCAGCGCCTTGGCGTCCTCGCCCGTGACAAACTCAAACAGCTCG
CCCGTCGACAGCCCCTTGTTCTGGTCGTCGTCCAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTC
GTCGTCCACCCGCCCGATGGTGTCGCGGTCGCTCATGTCGTCGATGTTGTCGTCGCGCACCAGCC
CGGCCGGGTTGTTCTGGACCAGCGACGTCAACAGGTCGGTGCGCTGGACGCCAATGGGCACGCCG
GGCATGCCCACCATGCCACCGACCACCCCCTGCGAGTAGTGGAACTCCAGCCCCGACGGCAGCGT
GATGGGGGTCTCGGTGTCGTCGTGCTTGTCGGAGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGG
GAGCGTCGATCAGCGGGGTCTTCTTCGAGATGCCCGCGAGCCCGGCCGCGCCAGCCGCACCGGCA
ACGGCTCCGGCGATGGCCATCCCGGCCCCGGAGCCAAACCCGTGC
Right flanking sequence: Indices 69069 -- 69568
TTAAGCCAACGTCTCGAGACTGGTCCTCAGACTGGCTCAACCCACGGTCCAATCCACGGTCCAAT
CCAGACTGGTCCCCAGACTGGCCCGTCCCAGTCTCCATTTCTCTCGCGGTCTGAGCACTCTCCGC
TTCAAGCCTCGCCTTCTCCGCCGCAAGCTTCTCCGCCTCCGCCTCCTGGGCAGCCACCTCCTTCG
CCCGCTGCTCGGCCTGGCGACGGCGCTCCTCATTCACCCGCCGCTGCTGCTCGAGCTTCGCCCGC
GTCTCCGCCGTGCGCTGCTCCACCTCGCGCGCCCGCTGGCCGTGCTGCTCGAGCTGGCGCTGCAA
CTGCTCGTGCTCGGCCACCAACTGCTGGTGCTCGTGCTCCGCCTGCTGCACGCCCTTTTCCGCGT
CGCTGTGGGAGCCCACGAGCTGCTGCAACTGCTGGCGCAAGTCCTGGACCTTGACAAGCACCACC
TGCACCTGCAGCTTCTTGACGTTGAGCTGGTTCAGCACCTGGTGG
Found at i:69127 original size:12 final size:12
Alignment explanation
Indices: 69110--69136 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
69100 CTGGCTCAAC
69110 CCACGGTCCAAT
1 CCACGGTCCAAT
69122 CCACGGTCCAAT
1 CCACGGTCCAAT
69134 CCA
1 CCA
69137 GACTGGTCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.15, T:0.15
Consensus pattern (12 bp):
CCACGGTCCAAT
Left flanking sequence: Indices 68610 -- 69109
GCCCCTTGTTCTGGTCGTCGTCCAGGAAGGTGGCCGGCCCCTCGCGCACCTTCTCGTCGTCCACC
CGCCCGATGGTGTCGCGGTCGCTCATGTCGTCGATGTTGTCGTCGCGCACCAGCCCGGCCGGGTT
GTTCTGGACCAGCGACGTCAACAGGTCGGTGCGCTGGACGCCAATGGGCACGCCGGGCATGCCCA
CCATGCCACCGACCACCCCCTGCGAGTAGTGGAACTCCAGCCCCGACGGCAGCGTGATGGGGGTC
TCGGTGTCGTCGTGCTTGTCGGAGCCCGCGGACGAGTAGGTCAGCGCGCCCGTGGGAGCGTCGAT
CAGCGGGGTCTTCTTCGAGATGCCCGCGAGCCCGGCCGCGCCAGCCGCACCGGCAACGGCTCCGG
CGATGGCCATCCCGGCCCCGGAGCCAAACCCGTGCTGGTCAGAGGCAGGGTGGTCAGAAGCAGGG
TGGTTTAAGCCAACGTCTCGAGACTGGTCCTCAGACTGGCTCAAC
Right flanking sequence: Indices 69137 -- 69636
GACTGGTCCCCAGACTGGCCCGTCCCAGTCTCCATTTCTCTCGCGGTCTGAGCACTCTCCGCTTC
AAGCCTCGCCTTCTCCGCCGCAAGCTTCTCCGCCTCCGCCTCCTGGGCAGCCACCTCCTTCGCCC
GCTGCTCGGCCTGGCGACGGCGCTCCTCATTCACCCGCCGCTGCTGCTCGAGCTTCGCCCGCGTC
TCCGCCGTGCGCTGCTCCACCTCGCGCGCCCGCTGGCCGTGCTGCTCGAGCTGGCGCTGCAACTG
CTCGTGCTCGGCCACCAACTGCTGGTGCTCGTGCTCCGCCTGCTGCACGCCCTTTTCCGCGTCGC
TGTGGGAGCCCACGAGCTGCTGCAACTGCTGGCGCAAGTCCTGGACCTTGACAAGCACCACCTGC
ACCTGCAGCTTCTTGACGTTGAGCTGGTTCAGCACCTGGTGGTGCGAGCCCTGCGCCTGCTCCAC
CTGCTTCTCGAGGTCGGCGATCTCGGCGTTGGTGGTGCCCATCTT
Found at i:70380 original size:21 final size:21
Alignment explanation
Indices: 70356--70404 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
70346 CTCTGGTACA
* *
70356 GGCCCTGGCTAGGCTGGTTTT
1 GGCCCTGGCTAGACTGATTTT
*
70377 GGCCCTGGTTAGACTGATTTT
1 GGCCCTGGCTAGACTGATTTT
*
70398 GACCCTG
1 GGCCCTG
70405 ACTGGCCTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.10, C:0.24, G:0.33, T:0.33
Consensus pattern (21 bp):
GGCCCTGGCTAGACTGATTTT
Left flanking sequence: Indices 69856 -- 70355
GTCCTTCTTGGCCTGGCGCACCCGTGCCAACTCGGCCTCGGCCCGGGCCCGTTTGTCGCCGAGCA
GCGTGGTCTGCGACGCCAACAGCTTGATCTGGTTCTGGTAGTTGGCCACGTCGGTGGTGGCCTGC
GAGAGCTCCTTCAGGTCCAGTTCCGCGAGGAGATCGCGGTTCTCGGGGAAGTACCCGTGGGTGGG
GGTGCCCAGCGGCGACGACGCGTAGGCGGCGCCAGCGAGGCCAGCAGCGGCGCCAGCAGCGAGCC
CGGCGGCCGCCATGGACCCGTGGCCGGGCGACTGGGCGCCTGGCGAGGCCACTCGGTCGGTTCTG
GGCGGGGGAGGCACTGCTCTGAGCGCGTCGTAGTTGGGCGAAAGGGGTGGTTGGGTCTGGGAAGC
CAGAGGCTGGGAAGCCTGAGACTGAGACTGGGCCAGAGCCTGGTAACCAGGAGGACCCAGAGGCT
GGGAAGTCTGGTTCTGGCTCGTTTGGCCTGTCTGGCTCTGGTACA
Right flanking sequence: Indices 70405 -- 70904
ACTGGCCTGGTTGGCCTGGTTGGCCTGGTTTTGACCCTGACTCTGTCCCTGGCCCTGACTCTGTC
CCTCCCTGTCACCCACCAACGCCTGCCCAAACGACAGCGTGGGCTTGAAACCCCCCGTAAGCGCC
GTCCGCACCCGTGGCAAGTCCCCGGTGCCCGCAGGCGTCAACTCCGCCCGGTCCGGCGCCGGCAG
CGCCTGGTGCGGCAGCGGCAGCCCAAAAATGTCCGCCAAGTCGTCCATCGCCGACTTCTGCCGCT
GGACGGGCGGATTGGGACCACTCTGGCCCGACGGAGCACCCACCAGCCCCTGACCCGATGGCACC
GCAGGCAACCCCTGGCTCGGCGGCGCCGTGTGGCCCACCTGGTTCTGGTACTGGTTCAACAGCTG
GATCAACAGGTCCGGCACCACGTTGGGCAACTTCTGGCCCGCCAACCGCTTCTGCACCAAAAACA
CGGCAATGGCAAACTCCAACCGCGAGAAAACCCCCGTGTTCTGCA
Found at i:70419 original size:9 final size:9
Alignment explanation
Indices: 70407--70434 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
70397 TGACCCTGAC
70407 TGGCCTGGT
1 TGGCCTGGT
70416 TGGCCTGGT
1 TGGCCTGGT
70425 TGGCCTGGT
1 TGGCCTGGT
70434 T
1 T
70435 TTGACCCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.21, G:0.43, T:0.36
Consensus pattern (9 bp):
TGGCCTGGT
Left flanking sequence: Indices 69907 -- 70406
TTTGTCGCCGAGCAGCGTGGTCTGCGACGCCAACAGCTTGATCTGGTTCTGGTAGTTGGCCACGT
CGGTGGTGGCCTGCGAGAGCTCCTTCAGGTCCAGTTCCGCGAGGAGATCGCGGTTCTCGGGGAAG
TACCCGTGGGTGGGGGTGCCCAGCGGCGACGACGCGTAGGCGGCGCCAGCGAGGCCAGCAGCGGC
GCCAGCAGCGAGCCCGGCGGCCGCCATGGACCCGTGGCCGGGCGACTGGGCGCCTGGCGAGGCCA
CTCGGTCGGTTCTGGGCGGGGGAGGCACTGCTCTGAGCGCGTCGTAGTTGGGCGAAAGGGGTGGT
TGGGTCTGGGAAGCCAGAGGCTGGGAAGCCTGAGACTGAGACTGGGCCAGAGCCTGGTAACCAGG
AGGACCCAGAGGCTGGGAAGTCTGGTTCTGGCTCGTTTGGCCTGTCTGGCTCTGGTACAGGCCCT
GGCTAGGCTGGTTTTGGCCCTGGTTAGACTGATTTTGACCCTGAC
Right flanking sequence: Indices 70435 -- 70934
TTGACCCTGACTCTGTCCCTGGCCCTGACTCTGTCCCTCCCTGTCACCCACCAACGCCTGCCCAA
ACGACAGCGTGGGCTTGAAACCCCCCGTAAGCGCCGTCCGCACCCGTGGCAAGTCCCCGGTGCCC
GCAGGCGTCAACTCCGCCCGGTCCGGCGCCGGCAGCGCCTGGTGCGGCAGCGGCAGCCCAAAAAT
GTCCGCCAAGTCGTCCATCGCCGACTTCTGCCGCTGGACGGGCGGATTGGGACCACTCTGGCCCG
ACGGAGCACCCACCAGCCCCTGACCCGATGGCACCGCAGGCAACCCCTGGCTCGGCGGCGCCGTG
TGGCCCACCTGGTTCTGGTACTGGTTCAACAGCTGGATCAACAGGTCCGGCACCACGTTGGGCAA
CTTCTGGCCCGCCAACCGCTTCTGCACCAAAAACACGGCAATGGCAAACTCCAACCGCGAGAAAA
CCCCCGTGTTCTGCACATCAGCAAGGTCCCAGATGGTGGCCAAGT
Found at i:70603 original size:21 final size:21
Alignment explanation
Indices: 70579--70621 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
70569 GCGTCAACTC
70579 CGCCCGGTCCGGC-GCCGGCAG
1 CGCCCGGTCCGGCAG-CGGCAG
* *
70600 CGCCTGGTGCGGCAGCGGCAG
1 CGCCCGGTCCGGCAGCGGCAG
70621 C
1 C
70622 CCAAAAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.07, C:0.42, G:0.44, T:0.07
Consensus pattern (21 bp):
CGCCCGGTCCGGCAGCGGCAG
Left flanking sequence: Indices 70079 -- 70578
GCGCCAGCGAGGCCAGCAGCGGCGCCAGCAGCGAGCCCGGCGGCCGCCATGGACCCGTGGCCGGG
CGACTGGGCGCCTGGCGAGGCCACTCGGTCGGTTCTGGGCGGGGGAGGCACTGCTCTGAGCGCGT
CGTAGTTGGGCGAAAGGGGTGGTTGGGTCTGGGAAGCCAGAGGCTGGGAAGCCTGAGACTGAGAC
TGGGCCAGAGCCTGGTAACCAGGAGGACCCAGAGGCTGGGAAGTCTGGTTCTGGCTCGTTTGGCC
TGTCTGGCTCTGGTACAGGCCCTGGCTAGGCTGGTTTTGGCCCTGGTTAGACTGATTTTGACCCT
GACTGGCCTGGTTGGCCTGGTTGGCCTGGTTTTGACCCTGACTCTGTCCCTGGCCCTGACTCTGT
CCCTCCCTGTCACCCACCAACGCCTGCCCAAACGACAGCGTGGGCTTGAAACCCCCCGTAAGCGC
CGTCCGCACCCGTGGCAAGTCCCCGGTGCCCGCAGGCGTCAACTC
Right flanking sequence: Indices 70622 -- 71121
CCAAAAATGTCCGCCAAGTCGTCCATCGCCGACTTCTGCCGCTGGACGGGCGGATTGGGACCACT
CTGGCCCGACGGAGCACCCACCAGCCCCTGACCCGATGGCACCGCAGGCAACCCCTGGCTCGGCG
GCGCCGTGTGGCCCACCTGGTTCTGGTACTGGTTCAACAGCTGGATCAACAGGTCCGGCACCACG
TTGGGCAACTTCTGGCCCGCCAACCGCTTCTGCACCAAAAACACGGCAATGGCAAACTCCAACCG
CGAGAAAACCCCCGTGTTCTGCACATCAGCAAGGTCCCAGATGGTGGCCAAGTCCTGCTGCGAGA
GCTTCAGCCCCACAAGGTACGCCACCACCTGGTCCGGCTGCAACTGGCCCAGCTTCAGCTTGTCC
AAGTTGGTGAAGATCTGGTTGAACTGCTGCGCCTGGTGCGGCGTGGCCACCCACTCCGCCAGCGT
GGCGAGCTTGGTGATGGGCTGCTGCAGCAACAGCCCCTGTCTCAG
Done.