sallet_2.scaffold.fasta.s54.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold69
Parameters: 2 7 7 80 10 50 500
Length:  172288

Tables:   1   2   

This is table  1  of  2  ( 222 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655--690	14	2.6	14	90	0	54	52	16	25	5	1.65
737--775	11	3.5	11	78	0	51	28	10	33	28	1.90
1098--1140	14	3.0	14	84	15	61	25	18	27	27	1.98
1807--1857	6	8.2	6	83	16	68	0	35	0	64	0.94
1807--1857	16	3.1	16	83	13	59	0	35	0	64	0.94
3243--3353	12	10.0	12	75	16	123	2	34	39	23	1.69
3271--3329	9	5.9	9	78	21	64	1	33	40	23	1.65
3243--3337	21	4.4	21	91	4	145	2	34	40	23	1.66
3244--3353	42	2.5	44	88	8	170	2	34	39	23	1.69
4021--4089	15	4.1	17	87	10	74	14	11	52	21	1.73
4007--4064	18	3.1	18	82	7	62	15	8	50	25	1.73
4030--4089	15	3.8	15	85	12	84	15	13	53	18	1.73
5281--5340	21	2.9	21	68	9	59	15	26	46	11	1.79
5419--5524	24	4.4	24	90	2	151	35	13	38	12	1.82
8557--8622	15	4.4	15	100	0	132	31	27	27	13	1.94
8641--8701	18	3.2	18	82	15	70	3	21	26	49	1.65
8671--8710	21	1.9	21	94	0	71	7	22	25	45	1.78
9878--9917	12	3.4	12	86	6	55	12	45	7	35	1.70
9878--9924	12	3.9	12	86	8	51	12	46	6	34	1.67
9913--9939	10	2.7	10	100	0	54	7	48	0	44	1.31
10437--10470	17	2.0	17	94	0	59	2	64	2	29	1.22
13497--13763	146	1.8	145	85	2	374	23	21	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14539--14579	16	2.6	16	96	0	73	24	43	19	12	1.85
16889--16931	13	3.4	13	96	3	79	32	46	13	6	1.71
23033--23091	11	5.7	10	80	9	57	49	23	15	11	1.77
30678--30736	21	2.9	21	92	2	102	47	0	44	8	1.33
30685--30750	21	3.2	22	81	10	59	50	1	42	6	1.36
34279--34342	32	2.0	32	90	0	101	26	43	7	21	1.80
35334--35377	6	7.3	6	86	0	52	0	25	56	18	1.41
41254--41281	10	2.8	10	100	0	56	0	0	60	39	0.97
41442--41475	17	2.0	17	94	0	59	32	17	17	32	1.94
45794--45821	3	9.3	3	100	0	56	32	67	0	0	0.91
46684--46753	30	2.3	30	85	7	88	2	15	45	35	1.61
49692--49722	11	2.8	11	95	0	53	12	64	12	9	1.50
51085--51127	15	2.8	16	89	6	63	32	27	32	6	1.84
51267--51303	12	2.9	13	88	8	58	48	0	32	18	1.49
51439--51512	26	2.8	25	90	8	96	27	28	12	32	1.92
51551--51589	19	2.1	19	90	9	62	23	10	25	41	1.86
51671--51710	16	2.5	16	83	0	53	2	27	35	35	1.71
52428--52480	15	3.4	15	86	5	70	49	49	0	1	1.12
52435--52502	13	4.8	14	83	8	68	48	48	0	2	1.16
54815--54850	14	2.5	15	90	4	56	13	8	44	33	1.74
55033--55077	15	3.0	15	100	0	90	20	20	40	20	1.92
55279--55330	16	3.3	16	91	2	88	32	26	26	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55402--55461	28	2.1	28	90	0	93	26	40	15	18	1.90
57958--57987	15	2.1	15	93	6	53	3	50	26	20	1.64
60518--60579	13	4.8	13	93	0	106	27	0	48	24	1.51
61495--61529	18	1.9	18	94	0	61	25	22	42	8	1.82
64591--64713	6	20.0	6	79	15	92	1	0	45	52	1.16
64586--64713	14	9.2	14	87	4	170	1	0	45	52	1.15
64591--64704	20	5.6	20	77	15	117	1	0	46	50	1.17
66985--67011	10	2.7	10	100	0	54	11	29	37	22	1.89
67915--67953	18	2.2	18	85	0	51	7	20	43	28	1.79
67961--67995	12	2.9	12	91	0	52	0	20	48	31	1.50
67961--67994	15	2.3	15	100	0	68	0	20	47	32	1.51
69167--69211	10	4.4	10	88	2	63	33	44	0	22	1.53
69161--69203	20	2.1	21	91	4	70	32	41	0	25	1.56
70422--70455	18	1.9	18	94	5	61	23	20	44	11	1.84
71180--71220	13	3.2	13	89	0	64	26	68	0	4	1.10
75303--75366	13	5.0	13	81	7	60	14	34	17	34	1.89
75525--75571	23	2.0	23	83	0	58	48	34	6	10	1.63
75591--75644	25	2.1	26	82	3	65	40	51	1	5	1.36
75749--75799	12	4.2	12	95	5	86	25	56	1	15	1.50
75862--75902	9	5.1	8	80	19	50	12	63	0	24	1.28
78198--78284	38	2.4	36	80	14	106	31	9	32	27	1.88
78464--78530	11	6.0	11	84	3	80	14	0	38	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78464--78528	34	1.9	33	93	3	112	13	0	38	47	1.43
81029--81064	11	3.3	11	96	0	63	44	22	8	25	1.80
81189--81226	19	2.1	18	90	5	58	42	21	28	7	1.81
82935--83001	12	5.4	12	87	1	53	17	5	40	35	1.75
82947--83017	13	5.6	13	86	5	101	18	7	38	36	1.78
82931--83017	24	3.5	26	81	9	101	19	6	35	37	1.79
83783--83858	13	6.0	13	83	6	102	42	0	42	15	1.47
85770--85794	9	2.8	9	100	0	50	44	0	24	32	1.54
86070--86095	9	2.9	9	100	0	52	30	23	23	23	1.99
86459--86514	24	2.3	24	79	11	62	1	28	51	17	1.56
90568--90599	12	2.7	12	100	0	64	6	40	43	9	1.62
91660--91809	39	3.9	38	82	10	144	48	0	40	12	1.40
91711--91809	13	7.4	13	91	3	153	53	0	38	8	1.31
92269--92295	14	1.9	14	100	0	54	11	44	14	29	1.80
94427--94725	34	8.7	34	94	2	476	36	35	10	18	1.85
95121--95188	27	2.5	28	90	7	113	7	27	33	30	1.84
95121--95188	13	5.0	14	92	3	113	7	27	33	30	1.84
95809--95856	8	6.1	8	78	4	53	16	10	29	43	1.81
95848--95902	12	4.4	12	74	17	58	23	7	32	36	1.82
95848--95901	26	2.0	27	89	3	83	24	7	33	35	1.83
95895--95925	16	1.9	16	93	0	53	29	9	32	29	1.89
96293--96395	17	6.1	17	79	2	127	11	22	25	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98376--98407	11	2.9	11	100	0	64	9	18	46	25	1.79
101045--101119	21	3.6	21	85	5	107	48	34	16	1	1.54
101176--101249	21	3.5	21	90	0	103	12	37	18	31	1.88
101190--101255	21	3.1	21	91	0	105	15	33	19	31	1.93
101218--101305	21	4.0	21	81	13	90	13	36	13	36	1.85
102831--102935	9	11.7	9	88	9	108	28	5	43	21	1.75
102840--102935	18	5.3	18	90	7	124	28	6	43	21	1.77
102840--102934	27	3.5	27	90	5	131	27	6	44	22	1.77
102991--103028	9	4.1	9	90	6	58	47	13	31	7	1.71
102991--103028	19	2.1	19	90	5	60	47	13	31	7	1.71
103246--103300	16	3.4	17	75	9	62	45	29	10	14	1.79
104149--104197	12	4.1	12	82	10	64	18	8	55	18	1.67
104143--104194	24	2.2	23	89	3	77	17	7	55	19	1.65
105355--105484	48	2.7	48	82	7	129	31	26	16	26	1.96
105372--105482	48	2.3	50	82	6	138	33	23	16	27	1.95
106387--106433	12	3.6	12	79	20	58	38	61	0	0	0.96
106397--106449	23	2.3	24	78	15	58	37	60	1	0	1.08
109631--109754	46	2.8	44	76	8	126	46	0	38	14	1.45
109658--109754	22	4.3	22	72	16	74	44	0	39	16	1.48
109724--109825	24	4.4	24	75	9	95	49	0	37	13	1.43
109724--109851	47	2.8	48	81	9	142	46	0	38	14	1.45
110792--110819	10	2.8	10	100	0	56	21	7	42	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111216--111255	11	3.5	11	96	3	71	30	20	42	7	1.79
112126--112179	5	10.0	5	83	15	63	5	20	55	18	1.62
112117--112180	11	5.8	11	87	7	85	7	20	53	18	1.69
112473--112544	38	1.9	37	91	8	119	9	31	16	41	1.81
112533--112580	22	2.2	22	96	0	87	10	27	14	47	1.76
112665--112702	18	2.1	19	90	5	60	2	34	34	28	1.71
112671--112725	27	2.0	27	92	0	92	7	36	32	23	1.82
112819--112953	15	8.4	16	85	8	109	24	35	8	31	1.85
112847--113005	15	10.8	15	79	11	132	23	40	5	30	1.76
112942--112992	12	4.0	12	80	14	66	25	52	1	19	1.56

Tables:   1   2