Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold69
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 172288
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
File 1 of 2
Found at i:674 original size:14 final size:14
Alignment explanation
Indices: 655--690 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
645 GAGGGTAGCA
* *
655 AGCAAAAGTGGCAG
1 AGCAAAAATGCCAG
669 AGCAAAAATGCCAG
1 AGCAAAAATGCCAG
683 AGCAAAAA
1 AGCAAAAA
691 ATCCCACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.17, G:0.25, T:0.06
Consensus pattern (14 bp):
AGCAAAAATGCCAG
Left flanking sequence: Indices 155 -- 654
GCGGGTTGGTAGCCGCGGGCGCGATGGGGCCTAACCCCGAGCCCGTTAACGGCGAGGTCCGGAGA
CGACGAGGGGCGGAAAGGGACGGGAGAGGGTGTACGTAGGCAGCACTGGGTAGTCTAGAGCCGTA
GAAAAGCACAATTGCGTGGCCAGTGCGCGGGTTGCGTTTTCACCGGGGTTTGGCGATGGCGTCGT
TTCATGTCTGACCGACACCGAAGTCGTGACAGGGATGGAAAGTCGTGGGGCGCCCGGTGGGACGC
TAGGAGGTGTGGTGGAGGGTTTGTGTGCCCTGGGATGGTACGGCTGGGGGTGTGAGAGCTACGGA
TGGGGGTAAGGTGTGGTGATTTAACATGGAGGTGAATTAATGTGGATTAAAGGGATAGGCAGGGG
TCGGAGTGCATTGCAGATAGGTGGTGGGGAAACAGACAAAAGACCCTGGGTGGTCACTGTTAATG
TCCTGAGCGACGAAGTGGGCTGACCAGTGGTGGGAGAGGGTAGCA
Right flanking sequence: Indices 691 -- 1190
ATCCCACTTTCTACGTAGTTTAGAGGTTCTAGAAGTACTAAAAGTGGGCTGTAAATAGGCAGTTA
GTAGGCTGTAAATAGGCTGTCTGGCCGGTAGGAGGCTCTGGGTGGCTACTACTGGTTACAACCAC
GCATTTACTGGACTCCGTTAGCCATTAAGCTTTCGGTTCGGAGTGATCTTCGCTGGACCTCCGAG
TGAGAAGATCACGGAGAAACGCGGAGTTAGTTTGTCGCTGAACCTGTGACGAAAAATTAATACAG
TGGGGGGTTCGCCACAATTTCTGAGGTGTGCCATAAGTGAAATAGCTTATCAGTTGCTCACAGTC
ATTTAGTATTTTGTAGTTTGCGGACTCCTGGAATCCCTCGTAATAAATGAAACCAGCTGCAGAAA
GACGAGGGTGCATGAGCTTACAGGTGCTGATCCTACAGGTGCTGAATTACAGGTGCTGAAAGATA
ACGGATGGGGACACAGCAGATACGAGTGAGCGAATTTATTTAGTC
Found at i:771 original size:11 final size:11
Alignment explanation
Indices: 737--775 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
727 ACTAAAAGTG
737 GGCTGTAAATA
1 GGCTGTAAATA
* * *
748 GGCAGTTAGTA
1 GGCTGTAAATA
759 GGCTGTAAATA
1 GGCTGTAAATA
770 GGCTGT
1 GGCTGT
776 CTGGCCGGTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.28, C:0.10, G:0.33, T:0.28
Consensus pattern (11 bp):
GGCTGTAAATA
Left flanking sequence: Indices 237 -- 736
GGACGGGAGAGGGTGTACGTAGGCAGCACTGGGTAGTCTAGAGCCGTAGAAAAGCACAATTGCGT
GGCCAGTGCGCGGGTTGCGTTTTCACCGGGGTTTGGCGATGGCGTCGTTTCATGTCTGACCGACA
CCGAAGTCGTGACAGGGATGGAAAGTCGTGGGGCGCCCGGTGGGACGCTAGGAGGTGTGGTGGAG
GGTTTGTGTGCCCTGGGATGGTACGGCTGGGGGTGTGAGAGCTACGGATGGGGGTAAGGTGTGGT
GATTTAACATGGAGGTGAATTAATGTGGATTAAAGGGATAGGCAGGGGTCGGAGTGCATTGCAGA
TAGGTGGTGGGGAAACAGACAAAAGACCCTGGGTGGTCACTGTTAATGTCCTGAGCGACGAAGTG
GGCTGACCAGTGGTGGGAGAGGGTAGCAAGCAAAAGTGGCAGAGCAAAAATGCCAGAGCAAAAAA
TCCCACTTTCTACGTAGTTTAGAGGTTCTAGAAGTACTAAAAGTG
Right flanking sequence: Indices 776 -- 1275
CTGGCCGGTAGGAGGCTCTGGGTGGCTACTACTGGTTACAACCACGCATTTACTGGACTCCGTTA
GCCATTAAGCTTTCGGTTCGGAGTGATCTTCGCTGGACCTCCGAGTGAGAAGATCACGGAGAAAC
GCGGAGTTAGTTTGTCGCTGAACCTGTGACGAAAAATTAATACAGTGGGGGGTTCGCCACAATTT
CTGAGGTGTGCCATAAGTGAAATAGCTTATCAGTTGCTCACAGTCATTTAGTATTTTGTAGTTTG
CGGACTCCTGGAATCCCTCGTAATAAATGAAACCAGCTGCAGAAAGACGAGGGTGCATGAGCTTA
CAGGTGCTGATCCTACAGGTGCTGAATTACAGGTGCTGAAAGATAACGGATGGGGACACAGCAGA
TACGAGTGAGCGAATTTATTTAGTCGGATTGATGGGATCCGTGGACTCCAGTCTTTAGCCATTGT
CTAATAGGGGCCAAATATTATTTCAAAATAGGCAGACAAATGACG
Found at i:1133 original size:14 final size:14
Alignment explanation
Indices: 1098--1140 Score: 61
Period size: 14 Copynumber: 3.0 Consensus size: 14
1088 GTGCATGAGC
1098 TTACAGGTGCTG-A
1 TTACAGGTGCTGAA
1111 TCCTACAGGTGCTGAA
1 T--TACAGGTGCTGAA
1127 TTACAGGTGCTGAA
1 TTACAGGTGCTGAA
1141 AGATAACGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 1 0.04
14 13 0.48
15 11 0.41
16 2 0.07
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (14 bp):
TTACAGGTGCTGAA
Left flanking sequence: Indices 598 -- 1097
TCACTGTTAATGTCCTGAGCGACGAAGTGGGCTGACCAGTGGTGGGAGAGGGTAGCAAGCAAAAG
TGGCAGAGCAAAAATGCCAGAGCAAAAAATCCCACTTTCTACGTAGTTTAGAGGTTCTAGAAGTA
CTAAAAGTGGGCTGTAAATAGGCAGTTAGTAGGCTGTAAATAGGCTGTCTGGCCGGTAGGAGGCT
CTGGGTGGCTACTACTGGTTACAACCACGCATTTACTGGACTCCGTTAGCCATTAAGCTTTCGGT
TCGGAGTGATCTTCGCTGGACCTCCGAGTGAGAAGATCACGGAGAAACGCGGAGTTAGTTTGTCG
CTGAACCTGTGACGAAAAATTAATACAGTGGGGGGTTCGCCACAATTTCTGAGGTGTGCCATAAG
TGAAATAGCTTATCAGTTGCTCACAGTCATTTAGTATTTTGTAGTTTGCGGACTCCTGGAATCCC
TCGTAATAAATGAAACCAGCTGCAGAAAGACGAGGGTGCATGAGC
Right flanking sequence: Indices 1141 -- 1640
AGATAACGGATGGGGACACAGCAGATACGAGTGAGCGAATTTATTTAGTCGGATTGATGGGATCC
GTGGACTCCAGTCTTTAGCCATTGTCTAATAGGGGCCAAATATTATTTCAAAATAGGCAGACAAA
TGACGAGTGACAGCCAACGTTGGCCCTGTTGCGACCCACTTCAGGGTCGGAAGCCAAGGGGCTAA
AGGTAACGTTGGTAATTCTTTGTTATTCTTAGCGATGATGGTTCTATTACTCAGATCAAAAGGGT
ACAAAATTCGGTAATGGAAGTAGACGAGAGTCCCGATAGTCGGGAAAATAAATAGTGTAGCAGTA
TCCAGGAAAGTAGTTTGTTTCACTTTTTAGAGTTTAATTACCTGTAACTACCTCATAGTTAGATG
GTTACCATATCTGGTTAGATGCGTAACCGGGTATATGAAACCAACAGGCCTAATTGGCTTCACTT
ACACCTCCACTAGGGCCACAGAGTTTGCGTCAATCTCATACAATC
Found at i:1818 original size:6 final size:6
Alignment explanation
Indices: 1807--1857 Score: 68
Period size: 6 Copynumber: 8.2 Consensus size: 6
1797 ATATTTATCC
1807 CTTTCT CTTTCT CTTTCT CTTTCT CTTTCTTT CTTTCT CTCTTC- CTTTCT
1 CTTTCT CTTTCT CTTTCT CTTTCT CTTTC--T CTTTCT CT-TTCT CTTTCT
1857 C
1 C
1858 CCTTCTCCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
5 3 0.07
6 29 0.71
7 3 0.07
8 6 0.15
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (6 bp):
CTTTCT
Left flanking sequence: Indices 1307 -- 1806
CACTTCAGGGTCGGAAGCCAAGGGGCTAAAGGTAACGTTGGTAATTCTTTGTTATTCTTAGCGAT
GATGGTTCTATTACTCAGATCAAAAGGGTACAAAATTCGGTAATGGAAGTAGACGAGAGTCCCGA
TAGTCGGGAAAATAAATAGTGTAGCAGTATCCAGGAAAGTAGTTTGTTTCACTTTTTAGAGTTTA
ATTACCTGTAACTACCTCATAGTTAGATGGTTACCATATCTGGTTAGATGCGTAACCGGGTATAT
GAAACCAACAGGCCTAATTGGCTTCACTTACACCTCCACTAGGGCCACAGAGTTTGCGTCAATCT
CATACAATCTCATACAATTTTCCACTAACTTTCTTGTGTATCAAGATTGAAATCACTCTTTAGAC
AATCTGTAGAACCTATGATTTTTCCATCATTTCCACCCGAGAAAAAGCGTTGGGGGGTCTGGGGG
GCGCCGCTCGCGGCCCCCCAGCTCACTATGCCCCTATATTTATCC
Right flanking sequence: Indices 1858 -- 2357
CCTTCTCCATTCTCCCCTACATCCATCCTATACTCTTCATTCTCATTAATATATTACCATACACC
CCCGCTACATCCACAACTCCGTCACCTCGGTCTCGGCCAACGCCTCGAGCGCGTACTTGATATCC
TTCCCGGTCTTGTCGACCGGCTGCCACCGCTTCAACGCCGCCTGGAGATGCACCGCCACCTCCAT
AGCATTAACGTGGGGGACCCGGGTGATGTCGTCCAAAAGGCCCCGCACGTTCCACGCAAGCGCAT
ACAAGTTGAGCAGCCCACCAAAGAACGACGGCTCAACCACCTTGGACCCGCCCGCCCGCATCACC
ACCATCGGGTGGTGGCTGGCGTTGGTCACCAGCGTCGTCGCCGTGAGGTGCTCGAGGCCTGCATG
TAGCCCGTCGGCCGGGATCTGGCATAACGCCGAGTGGAGCCAGTGTGCAGGCTCAACGTCGGCCA
AGTCGGCGACTACTCCGTGGTCGTTGAAACTGCCGCGGTTCTTGA
Found at i:1839 original size:16 final size:16
Alignment explanation
Indices: 1807--1857 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
1797 ATATTTATCC
1807 CTTTCTCTTTCTCTTTCT
1 CTTTCTC-TT-TCTTTCT
1825 CTTTCTCTTTCTTTCT
1 CTTTCTCTTTCTTTCT
*
1841 -TTCTCTCTTCCTTTCT
1 CTT-TCTCTTTCTTTCT
1857 C
1 C
1858 CCTTCTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 2 0.07
16 19 0.63
17 2 0.07
18 7 0.23
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (16 bp):
CTTTCTCTTTCTTTCT
Left flanking sequence: Indices 1307 -- 1806
CACTTCAGGGTCGGAAGCCAAGGGGCTAAAGGTAACGTTGGTAATTCTTTGTTATTCTTAGCGAT
GATGGTTCTATTACTCAGATCAAAAGGGTACAAAATTCGGTAATGGAAGTAGACGAGAGTCCCGA
TAGTCGGGAAAATAAATAGTGTAGCAGTATCCAGGAAAGTAGTTTGTTTCACTTTTTAGAGTTTA
ATTACCTGTAACTACCTCATAGTTAGATGGTTACCATATCTGGTTAGATGCGTAACCGGGTATAT
GAAACCAACAGGCCTAATTGGCTTCACTTACACCTCCACTAGGGCCACAGAGTTTGCGTCAATCT
CATACAATCTCATACAATTTTCCACTAACTTTCTTGTGTATCAAGATTGAAATCACTCTTTAGAC
AATCTGTAGAACCTATGATTTTTCCATCATTTCCACCCGAGAAAAAGCGTTGGGGGGTCTGGGGG
GCGCCGCTCGCGGCCCCCCAGCTCACTATGCCCCTATATTTATCC
Right flanking sequence: Indices 1858 -- 2357
CCTTCTCCATTCTCCCCTACATCCATCCTATACTCTTCATTCTCATTAATATATTACCATACACC
CCCGCTACATCCACAACTCCGTCACCTCGGTCTCGGCCAACGCCTCGAGCGCGTACTTGATATCC
TTCCCGGTCTTGTCGACCGGCTGCCACCGCTTCAACGCCGCCTGGAGATGCACCGCCACCTCCAT
AGCATTAACGTGGGGGACCCGGGTGATGTCGTCCAAAAGGCCCCGCACGTTCCACGCAAGCGCAT
ACAAGTTGAGCAGCCCACCAAAGAACGACGGCTCAACCACCTTGGACCCGCCCGCCCGCATCACC
ACCATCGGGTGGTGGCTGGCGTTGGTCACCAGCGTCGTCGCCGTGAGGTGCTCGAGGCCTGCATG
TAGCCCGTCGGCCGGGATCTGGCATAACGCCGAGTGGAGCCAGTGTGCAGGCTCAACGTCGGCCA
AGTCGGCGACTACTCCGTGGTCGTTGAAACTGCCGCGGTTCTTGA
Found at i:3260 original size:12 final size:12
Alignment explanation
Indices: 3243--3353 Score: 123
Period size: 12 Copynumber: 10.0 Consensus size: 12
3233 CCCCGGGGGA
3243 GGTCGCCCTTGG
1 GGTCGCCCTTGG
3255 GGTCGCCCTTGG
1 GGTCGCCCTTGG
3267 GGTCGCCCTT-G
1 GGTCGCCCTTGG
3278 GG--GCCCTTGG
1 GGTCGCCCTTGG
*
3288 AGTCGCCCTT-G
1 GGTCGCCCTTGG
3299 GG--GCCCTTGG
1 GGTCGCCCTTGG
3309 GGTCGCCCTT-G
1 GGTCGCCCTTGG
3320 GG--GCCCTTGG
1 GGTCGCCCTTGG
* * *
3330 AGTCGCCCCTAG
1 GGTCGCCCTTGG
3342 GGTCGCCCTTGG
1 GGTCGCCCTTGG
3354 TTAAGTCGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
9 18 0.22
10 7 0.09
11 8 0.10
12 49 0.60
ACGTcount: A:0.03, C:0.34, G:0.40, T:0.23
Consensus pattern (12 bp):
GGTCGCCCTTGG
Left flanking sequence: Indices 2743 -- 3242
CACGGCCCCGGAGGCCGCCACCACCACCACGGCGTCGGCGCGGTGCAAGTGCACCGTCCAGTTGG
AGAGGAGGGTCATGTGGTCGGCCACACGGTCAGCAATGGCCCCGTGGCCCTCAAGAGCAATGGCC
ACCACCTCGGTGTCGGGGCCAAGAGCAGCAATGGTGGCATCGGCCATCGCGAGCGCCAGCCCCGT
GGGGCCCCCGACGTGGCTCTTGGTGTAGCGTGCAGGGAGGTGCTGGTGCACCGCCACCACCACCA
CGCGCTCGGGGCACGCGCGCTCGGAGGAGTAGATGTGGTTCTCGGGGGTGCGGCGGCGGTAGAGG
GCGTCCTGGAGCCAGAGGCGCCAGCGGGTGCGCTGGGTGATCTGGCGGAACGACGCCGCGACCGA
GGGGCCCACGCGGAGCGGGAGGGGCACCTGCGCCAGGGGCACCGAGTACGGGGGGGTGGGGTCAT
TAGTGGGGGTGTCGCTGGCGTCTGGGCGCGGGGATCCCCGGGGGA
Right flanking sequence: Indices 3354 -- 3853
TTAAGTCGATTTGGGAGTTGCGCTTAACACGGTCGTCGCTCCCTCCGCTCCCCCTCCTCTTGCCT
CCGTCACTCCTCCCGTCGCTCACCTTCACCCTTCCGCCACTCCTCCCCTTGACGCTCTGCACACT
CGCCAGGGGAGTCATGGGCACCAGCACCGCCGGCGGTGCCGCCGCCTCGTGGGGCGGGCGCGGGG
TCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGTGCCCATCACCGCGAGCTCG
TGGTGGCACACCTCGCCCTCGACAAGGACCCGGGTCACGGCGTACCCGAGGGCGCCCTGGGCAGT
CTCCACCGCCCTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGGAGGCGCACCACCTCGTCGT
CGTCATCGTCCTCCTCTGGCGCCGCGGCGGAGGTGAAGGGCCACCACCAGGAGGAGGTGTTGGCG
GGGGGCGCGGGGTTGGCCGGGGGCAGCTCAGCCTCGGGGAGGAGG
Found at i:3285 original size:9 final size:9
Alignment explanation
Indices: 3271--3329 Score: 64
Period size: 9 Copynumber: 5.9 Consensus size: 9
3261 CCTTGGGGTC
3271 GCCCTTGGG
1 GCCCTTGGG
3280 GCCCTTGGAG
1 GCCCTTGG-G
3290 TCGCCCTTGGG
1 --GCCCTTGGG
3301 GCCCTTGGGG
1 GCCCTT-GGG
3311 TCGCCCTTGGG
1 --GCCCTTGGG
3322 GCCCTTGG
1 GCCCTTGG
3330 AGTCGCCCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
9 22 0.50
10 4 0.09
11 4 0.09
12 14 0.32
ACGTcount: A:0.02, C:0.34, G:0.41, T:0.24
Consensus pattern (9 bp):
GCCCTTGGG
Left flanking sequence: Indices 2771 -- 3270
ACGGCGTCGGCGCGGTGCAAGTGCACCGTCCAGTTGGAGAGGAGGGTCATGTGGTCGGCCACACG
GTCAGCAATGGCCCCGTGGCCCTCAAGAGCAATGGCCACCACCTCGGTGTCGGGGCCAAGAGCAG
CAATGGTGGCATCGGCCATCGCGAGCGCCAGCCCCGTGGGGCCCCCGACGTGGCTCTTGGTGTAG
CGTGCAGGGAGGTGCTGGTGCACCGCCACCACCACCACGCGCTCGGGGCACGCGCGCTCGGAGGA
GTAGATGTGGTTCTCGGGGGTGCGGCGGCGGTAGAGGGCGTCCTGGAGCCAGAGGCGCCAGCGGG
TGCGCTGGGTGATCTGGCGGAACGACGCCGCGACCGAGGGGCCCACGCGGAGCGGGAGGGGCACC
TGCGCCAGGGGCACCGAGTACGGGGGGGTGGGGTCATTAGTGGGGGTGTCGCTGGCGTCTGGGCG
CGGGGATCCCCGGGGGAGGTCGCCCTTGGGGTCGCCCTTGGGGTC
Right flanking sequence: Indices 3330 -- 3829
AGTCGCCCCTAGGGTCGCCCTTGGTTAAGTCGATTTGGGAGTTGCGCTTAACACGGTCGTCGCTC
CCTCCGCTCCCCCTCCTCTTGCCTCCGTCACTCCTCCCGTCGCTCACCTTCACCCTTCCGCCACT
CCTCCCCTTGACGCTCTGCACACTCGCCAGGGGAGTCATGGGCACCAGCACCGCCGGCGGTGCCG
CCGCCTCGTGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTG
GCCGTGCCCATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGACAAGGACCCGGGTCACGGC
GTACCCGAGGGCGCCCTGGGCAGTCTCCACCGCCCTGCGTGCCTGGCGGAGGTGTGTGCGGCGTC
CGTGGAGGCGCACCACCTCGTCGTCGTCATCGTCCTCCTCTGGCGCCGCGGCGGAGGTGAAGGGC
CACCACCAGGAGGAGGTGTTGGCGGGGGGCGCGGGGTTGGCCGGG
Found at i:3285 original size:21 final size:21
Alignment explanation
Indices: 3243--3337 Score: 145
Period size: 21 Copynumber: 4.4 Consensus size: 21
3233 CCCCGGGGGA
3243 GGTCGCCCTTGGGGTCGCCCTTGG
1 GGTCGCCCTT-GGG--GCCCTTGG
3267 GGTCGCCCTTGGGGCCCTTGG
1 GGTCGCCCTTGGGGCCCTTGG
*
3288 AGTCGCCCTTGGGGCCCTTGG
1 GGTCGCCCTTGGGGCCCTTGG
3309 GGTCGCCCTTGGGGCCCTTGG
1 GGTCGCCCTTGGGGCCCTTGG
*
3330 AGTCGCCC
1 GGTCGCCC
3338 CTAGGGTCGC
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
21 55 0.81
23 3 0.04
24 10 0.15
ACGTcount: A:0.02, C:0.35, G:0.40, T:0.23
Consensus pattern (21 bp):
GGTCGCCCTTGGGGCCCTTGG
Left flanking sequence: Indices 2743 -- 3242
CACGGCCCCGGAGGCCGCCACCACCACCACGGCGTCGGCGCGGTGCAAGTGCACCGTCCAGTTGG
AGAGGAGGGTCATGTGGTCGGCCACACGGTCAGCAATGGCCCCGTGGCCCTCAAGAGCAATGGCC
ACCACCTCGGTGTCGGGGCCAAGAGCAGCAATGGTGGCATCGGCCATCGCGAGCGCCAGCCCCGT
GGGGCCCCCGACGTGGCTCTTGGTGTAGCGTGCAGGGAGGTGCTGGTGCACCGCCACCACCACCA
CGCGCTCGGGGCACGCGCGCTCGGAGGAGTAGATGTGGTTCTCGGGGGTGCGGCGGCGGTAGAGG
GCGTCCTGGAGCCAGAGGCGCCAGCGGGTGCGCTGGGTGATCTGGCGGAACGACGCCGCGACCGA
GGGGCCCACGCGGAGCGGGAGGGGCACCTGCGCCAGGGGCACCGAGTACGGGGGGGTGGGGTCAT
TAGTGGGGGTGTCGCTGGCGTCTGGGCGCGGGGATCCCCGGGGGA
Right flanking sequence: Indices 3338 -- 3837
CTAGGGTCGCCCTTGGTTAAGTCGATTTGGGAGTTGCGCTTAACACGGTCGTCGCTCCCTCCGCT
CCCCCTCCTCTTGCCTCCGTCACTCCTCCCGTCGCTCACCTTCACCCTTCCGCCACTCCTCCCCT
TGACGCTCTGCACACTCGCCAGGGGAGTCATGGGCACCAGCACCGCCGGCGGTGCCGCCGCCTCG
TGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGTGCC
CATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGACAAGGACCCGGGTCACGGCGTACCCGA
GGGCGCCCTGGGCAGTCTCCACCGCCCTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGGAGG
CGCACCACCTCGTCGTCGTCATCGTCCTCCTCTGGCGCCGCGGCGGAGGTGAAGGGCCACCACCA
GGAGGAGGTGTTGGCGGGGGGCGCGGGGTTGGCCGGGGGCAGCTC
Found at i:3313 original size:42 final size:44
Alignment explanation
Indices: 3244--3353 Score: 170
Period size: 42 Copynumber: 2.5 Consensus size: 44
3234 CCCGGGGGAG
3244 GTCGCCCTTGGGGTCGCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
1 GTCGCCCTTGGGG-CGCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
3289 GTCGCCCTT-GGG-GCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
1 GTCGCCCTTGGGGCGCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
* *
3331 GTCGCCCCTAGGGTCGCCCTTGG
1 GTCG-CCCTTGGGGCGCCCTTGG
3354 TTAAGTCGAT
Statistics
Matches: 60, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
42 34 0.57
43 4 0.07
44 5 0.08
45 17 0.28
ACGTcount: A:0.03, C:0.35, G:0.39, T:0.24
Consensus pattern (44 bp):
GTCGCCCTTGGGGCGCCCTTGGGGTCGCCCTTGGGGCCCTTGGA
Left flanking sequence: Indices 2744 -- 3243
ACGGCCCCGGAGGCCGCCACCACCACCACGGCGTCGGCGCGGTGCAAGTGCACCGTCCAGTTGGA
GAGGAGGGTCATGTGGTCGGCCACACGGTCAGCAATGGCCCCGTGGCCCTCAAGAGCAATGGCCA
CCACCTCGGTGTCGGGGCCAAGAGCAGCAATGGTGGCATCGGCCATCGCGAGCGCCAGCCCCGTG
GGGCCCCCGACGTGGCTCTTGGTGTAGCGTGCAGGGAGGTGCTGGTGCACCGCCACCACCACCAC
GCGCTCGGGGCACGCGCGCTCGGAGGAGTAGATGTGGTTCTCGGGGGTGCGGCGGCGGTAGAGGG
CGTCCTGGAGCCAGAGGCGCCAGCGGGTGCGCTGGGTGATCTGGCGGAACGACGCCGCGACCGAG
GGGCCCACGCGGAGCGGGAGGGGCACCTGCGCCAGGGGCACCGAGTACGGGGGGGTGGGGTCATT
AGTGGGGGTGTCGCTGGCGTCTGGGCGCGGGGATCCCCGGGGGAG
Right flanking sequence: Indices 3354 -- 3853
TTAAGTCGATTTGGGAGTTGCGCTTAACACGGTCGTCGCTCCCTCCGCTCCCCCTCCTCTTGCCT
CCGTCACTCCTCCCGTCGCTCACCTTCACCCTTCCGCCACTCCTCCCCTTGACGCTCTGCACACT
CGCCAGGGGAGTCATGGGCACCAGCACCGCCGGCGGTGCCGCCGCCTCGTGGGGCGGGCGCGGGG
TCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGTGCCCATCACCGCGAGCTCG
TGGTGGCACACCTCGCCCTCGACAAGGACCCGGGTCACGGCGTACCCGAGGGCGCCCTGGGCAGT
CTCCACCGCCCTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGGAGGCGCACCACCTCGTCGT
CGTCATCGTCCTCCTCTGGCGCCGCGGCGGAGGTGAAGGGCCACCACCAGGAGGAGGTGTTGGCG
GGGGGCGCGGGGTTGGCCGGGGGCAGCTCAGCCTCGGGGAGGAGG
Found at i:4052 original size:19 final size:17
Alignment explanation
Indices: 4021--4089 Score: 74
Period size: 15 Copynumber: 4.1 Consensus size: 17
4011 GGGTCTGGGT
*
4021 GGTTGTAGTAGGGGCCTGG
1 GGTTG-AGTA-GGGCCTGA
4040 GGTTGAGTAAGGGCCTGA
1 GGTTGAGT-AGGGCCTGA
4058 GGTTGAG--GGGCCTGA
1 GGTTGAGTAGGGCCTGA
4073 GGTTGAG--GGGCCTGA
1 GGTTGAGTAGGGCCTGA
4088 GG
1 GG
4090 AGGTTGAGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
15 25 0.52
18 17 0.35
19 6 0.12
ACGTcount: A:0.14, C:0.12, G:0.52, T:0.22
Consensus pattern (17 bp):
GGTTGAGTAGGGCCTGA
Left flanking sequence: Indices 3521 -- 4020
GCCGCCGCCTCGTGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTC
GGTGGCCGTGCCCATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGACAAGGACCCGGGTCA
CGGCGTACCCGAGGGCGCCCTGGGCAGTCTCCACCGCCCTGCGTGCCTGGCGGAGGTGTGTGCGG
CGTCCGTGGAGGCGCACCACCTCGTCGTCGTCATCGTCCTCCTCTGGCGCCGCGGCGGAGGTGAA
GGGCCACCACCAGGAGGAGGTGTTGGCGGGGGGCGCGGGGTTGGCCGGGGGCAGCTCAGCCTCGG
GGAGGAGGGGAGTGTGCTCGGAGGGGGGTTGTCTCAGCACCATGCCGTAGACGTAGGAGACGGCG
CCCAGCGGGTTCACCCACGATAGCCGGCCCGGCGGCGGGGCCGAGTCGGAGCCAAGGTGGGCACA
CTCGTCTTTGTCTCTGGGGCTCTCCGTGGTGGTAAGGGTCTGGGT
Right flanking sequence: Indices 4090 -- 4589
AGGTTGAGAAGAGGCCGGAGGAGGTGCCTTCTTTTGGGGCGACGAGGGGCGCTGAGGTGCGGCCC
CATGCGTGGGTGCACCACCGGTGCTAGCACCACTGGTGGCGTCGTTGGCAGCACCTCCGTTCGTG
GTGGCACCCTTAGCACCCTTGGCACCATCCTTCACAGCACCTCGTTTGTCTTTAGCACTTTCACC
ATTAGCATTAGAGCCACCCGTTCCGGTCTCAGGCTTGCTTTCACGGGTGTCGCTAATCCGAAACG
ACTCCTCGATCGCCTCGAGCGGCGTCGCCCGGCCGTCCTCCTTGGGTGGGTCTGGCTGGCTCGAC
CACAAGCGCCACCGCAGGCGCGGGGGCTCAGGCGGGGCCTCGGGTGCGGGTGCACCGGGAGGAGG
TGCCTCGCGCACAGGAGCCCCCAGGTTCTGCACACCTGGTGTCAGCACGCCCATCACACTGTAGC
TGTCGTGGTGTTTGTGGAGGGAAGGGACTGCTATAGATAGCTCCT
Found at i:4053 original size:18 final size:18
Alignment explanation
Indices: 4007--4064 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
3997 CTCCGTGGTG
*
4007 GTAAGGGTCTGGGTGGTTGTA
1 GTAAGGGCCT-GG-GGTTG-A
*
4028 GTAGGGGCCTGGGGTTGA
1 GTAAGGGCCTGGGGTTGA
*
4046 GTAAGGGCCTGAGGTTGA
1 GTAAGGGCCTGGGGTTGA
4064 G
1 G
4065 GGGCCTGAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 18 0.55
19 5 0.15
20 2 0.06
21 8 0.24
ACGTcount: A:0.16, C:0.09, G:0.50, T:0.26
Consensus pattern (18 bp):
GTAAGGGCCTGGGGTTGA
Left flanking sequence: Indices 3507 -- 4006
GCACCGCCGGCGGTGCCGCCGCCTCGTGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGC
ACCGGGTGCAGCTCGGTGGCCGTGCCCATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGAC
AAGGACCCGGGTCACGGCGTACCCGAGGGCGCCCTGGGCAGTCTCCACCGCCCTGCGTGCCTGGC
GGAGGTGTGTGCGGCGTCCGTGGAGGCGCACCACCTCGTCGTCGTCATCGTCCTCCTCTGGCGCC
GCGGCGGAGGTGAAGGGCCACCACCAGGAGGAGGTGTTGGCGGGGGGCGCGGGGTTGGCCGGGGG
CAGCTCAGCCTCGGGGAGGAGGGGAGTGTGCTCGGAGGGGGGTTGTCTCAGCACCATGCCGTAGA
CGTAGGAGACGGCGCCCAGCGGGTTCACCCACGATAGCCGGCCCGGCGGCGGGGCCGAGTCGGAG
CCAAGGTGGGCACACTCGTCTTTGTCTCTGGGGCTCTCCGTGGTG
Right flanking sequence: Indices 4065 -- 4564
GGGCCTGAGGTTGAGGGGCCTGAGGAGGTTGAGAAGAGGCCGGAGGAGGTGCCTTCTTTTGGGGC
GACGAGGGGCGCTGAGGTGCGGCCCCATGCGTGGGTGCACCACCGGTGCTAGCACCACTGGTGGC
GTCGTTGGCAGCACCTCCGTTCGTGGTGGCACCCTTAGCACCCTTGGCACCATCCTTCACAGCAC
CTCGTTTGTCTTTAGCACTTTCACCATTAGCATTAGAGCCACCCGTTCCGGTCTCAGGCTTGCTT
TCACGGGTGTCGCTAATCCGAAACGACTCCTCGATCGCCTCGAGCGGCGTCGCCCGGCCGTCCTC
CTTGGGTGGGTCTGGCTGGCTCGACCACAAGCGCCACCGCAGGCGCGGGGGCTCAGGCGGGGCCT
CGGGTGCGGGTGCACCGGGAGGAGGTGCCTCGCGCACAGGAGCCCCCAGGTTCTGCACACCTGGT
GTCAGCACGCCCATCACACTGTAGCTGTCGTGGTGTTTGTGGAGG
Found at i:4070 original size:15 final size:15
Alignment explanation
Indices: 4030--4089 Score: 84
Period size: 15 Copynumber: 3.8 Consensus size: 15
4020 TGGTTGTAGT
*
4030 AGGGGCCTGGGGTTG
1 AGGGGCCTGAGGTTG
4045 AGTAAGGGCCTGAGGTTG
1 AG---GGGCCTGAGGTTG
4063 AGGGGCCTGAGGTTG
1 AGGGGCCTGAGGTTG
4078 AGGGGCCTGAGG
1 AGGGGCCTGAGG
4090 AGGTTGAGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
15 27 0.66
18 14 0.34
ACGTcount: A:0.15, C:0.13, G:0.53, T:0.18
Consensus pattern (15 bp):
AGGGGCCTGAGGTTG
Left flanking sequence: Indices 3530 -- 4029
TCGTGGGGCGGGCGCGGGGTCTTGCTCGCCAACTTGTACCGCACCGGGTGCAGCTCGGTGGCCGT
GCCCATCACCGCGAGCTCGTGGTGGCACACCTCGCCCTCGACAAGGACCCGGGTCACGGCGTACC
CGAGGGCGCCCTGGGCAGTCTCCACCGCCCTGCGTGCCTGGCGGAGGTGTGTGCGGCGTCCGTGG
AGGCGCACCACCTCGTCGTCGTCATCGTCCTCCTCTGGCGCCGCGGCGGAGGTGAAGGGCCACCA
CCAGGAGGAGGTGTTGGCGGGGGGCGCGGGGTTGGCCGGGGGCAGCTCAGCCTCGGGGAGGAGGG
GAGTGTGCTCGGAGGGGGGTTGTCTCAGCACCATGCCGTAGACGTAGGAGACGGCGCCCAGCGGG
TTCACCCACGATAGCCGGCCCGGCGGCGGGGCCGAGTCGGAGCCAAGGTGGGCACACTCGTCTTT
GTCTCTGGGGCTCTCCGTGGTGGTAAGGGTCTGGGTGGTTGTAGT
Right flanking sequence: Indices 4090 -- 4589
AGGTTGAGAAGAGGCCGGAGGAGGTGCCTTCTTTTGGGGCGACGAGGGGCGCTGAGGTGCGGCCC
CATGCGTGGGTGCACCACCGGTGCTAGCACCACTGGTGGCGTCGTTGGCAGCACCTCCGTTCGTG
GTGGCACCCTTAGCACCCTTGGCACCATCCTTCACAGCACCTCGTTTGTCTTTAGCACTTTCACC
ATTAGCATTAGAGCCACCCGTTCCGGTCTCAGGCTTGCTTTCACGGGTGTCGCTAATCCGAAACG
ACTCCTCGATCGCCTCGAGCGGCGTCGCCCGGCCGTCCTCCTTGGGTGGGTCTGGCTGGCTCGAC
CACAAGCGCCACCGCAGGCGCGGGGGCTCAGGCGGGGCCTCGGGTGCGGGTGCACCGGGAGGAGG
TGCCTCGCGCACAGGAGCCCCCAGGTTCTGCACACCTGGTGTCAGCACGCCCATCACACTGTAGC
TGTCGTGGTGTTTGTGGAGGGAAGGGACTGCTATAGATAGCTCCT
Found at i:5305 original size:21 final size:21
Alignment explanation
Indices: 5281--5340 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
5271 TCCAGGAGAG
*
5281 GCACGAGGCGTTGGTGGCGGA
1 GCACGAGGCGTTGGTGGCGCA
* ** *
5302 GCACCAGGCGCTCCG-GGAGCA
1 GCACGAGGCG-TTGGTGGCGCA
5323 GCACGAGGCGTTGGTGGC
1 GCACGAGGCGTTGGTGGC
5341 CCGGTGGATG
Statistics
Matches: 28, Mismatches: 9, Indels: 4
0.68 0.22 0.10
Matches are distributed among these distances:
20 2 0.07
21 24 0.86
22 2 0.07
ACGTcount: A:0.15, C:0.27, G:0.47, T:0.12
Consensus pattern (21 bp):
GCACGAGGCGTTGGTGGCGCA
Left flanking sequence: Indices 4781 -- 5280
GTGGTATCTCGGTTAGCGGCCCTGGTGGCATTTGCAGCCCGCATGTGCTGACACCGAGCGAGCAC
CAGACACACCATGGAGGCACCCAGCACCCTCCCTGACCAGACGCCCAGCGACCGCGTCCACAGCC
CGCCCGCGTGGGCGGCGGACGTCATGACGCTTCTCCGGGAACGGGACGCCGCCGTGGCCCCCAAT
TCCCCCTACTACGAGGCGTTCTCGGCCCTCCTTGCGCGGACGGTCACCACTCGCACCAGTGACCA
GGCCACCGGTGCGGCTGAGCTCAAACAGCGGCTCGAAAACGCAGCGTTTGAGCGGGAAAAACTCG
TAGGCGAGCTCCGCGACGCCCGCGAACAAATAGACACCCTTACCAGAGAGAAAGCCCGGCTCCAG
CACCGCCGGGACCACCTCCAGGCCGAGATCAGAGACAAAAACCGGCAGATCGAGGTGGTGAACGA
CGAGCAGTTGGTGGCCCAGATGCAGGCCAACGTGCTCCAGGAGAG
Right flanking sequence: Indices 5341 -- 5840
CCGGTGGATGGCCCGGGCCGAGTCGGAGGCCGCGAGGATGAACGAGGCGGTGGAGCGAACGAACG
GAAGCCAGGGGTAGAAGAATATGGGCCAGAGGTAGGCGAAGAGAATGTGCCAGGGCTAGGCGAAG
AAAATGTGCCAGGGCTAGGCGAAGAAAATGTGCCAGGGGTAGGCAAAGAAAATGGTATATCATTT
GTCTAAACTGGGCCCGAACTGGAACAGTGAGACGGAAATATCAACCTGAAGAGGTTGGTGGTAAT
TGACGGGACTTGTTTGTGAAGCCAATAGCTTGTATTCAAGAATCCAATTGTCTCTTGAAGTTACT
AGGCTCTGATGTTAGGATTATGGGTATCTTTACAGGAATCTTTAAAGGAAATCTTAACCGGGCCA
ATCTTCAAAAGGCCAATCTTCTCAGGAAATTTTCACAGGACCATCACAGGACCAATTGACCGAGT
TACCGGCTGTCCCAACACTTTCTTTTTCGGCTTCATTCCGTTTTC
Found at i:5457 original size:24 final size:24
Alignment explanation
Indices: 5419--5524 Score: 151
Period size: 24 Copynumber: 4.4 Consensus size: 24
5409 GCCAGGGGTA
* *
5419 GAAGAATATGGGCCAGAGG-TAGGC
1 GAAGAAAATGTGCCAG-GGCTAGGC
*
5443 GAAGAGAATGTGCCAGGGCTAGGC
1 GAAGAAAATGTGCCAGGGCTAGGC
5467 GAAGAAAATGTGCCAGGGCTAGGC
1 GAAGAAAATGTGCCAGGGCTAGGC
*
5491 GAAGAAAATGTGCCAGGGGTAGGC
1 GAAGAAAATGTGCCAGGGCTAGGC
*
5515 AAAGAAAATG
1 GAAGAAAATG
5525 GTATATCATT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
23 2 0.03
24 73 0.97
ACGTcount: A:0.36, C:0.13, G:0.39, T:0.12
Consensus pattern (24 bp):
GAAGAAAATGTGCCAGGGCTAGGC
Left flanking sequence: Indices 4919 -- 5418
TGGGCGGCGGACGTCATGACGCTTCTCCGGGAACGGGACGCCGCCGTGGCCCCCAATTCCCCCTA
CTACGAGGCGTTCTCGGCCCTCCTTGCGCGGACGGTCACCACTCGCACCAGTGACCAGGCCACCG
GTGCGGCTGAGCTCAAACAGCGGCTCGAAAACGCAGCGTTTGAGCGGGAAAAACTCGTAGGCGAG
CTCCGCGACGCCCGCGAACAAATAGACACCCTTACCAGAGAGAAAGCCCGGCTCCAGCACCGCCG
GGACCACCTCCAGGCCGAGATCAGAGACAAAAACCGGCAGATCGAGGTGGTGAACGACGAGCAGT
TGGTGGCCCAGATGCAGGCCAACGTGCTCCAGGAGAGGCACGAGGCGTTGGTGGCGGAGCACCAG
GCGCTCCGGGAGCAGCACGAGGCGTTGGTGGCCCGGTGGATGGCCCGGGCCGAGTCGGAGGCCGC
GAGGATGAACGAGGCGGTGGAGCGAACGAACGGAAGCCAGGGGTA
Right flanking sequence: Indices 5525 -- 6024
GTATATCATTTGTCTAAACTGGGCCCGAACTGGAACAGTGAGACGGAAATATCAACCTGAAGAGG
TTGGTGGTAATTGACGGGACTTGTTTGTGAAGCCAATAGCTTGTATTCAAGAATCCAATTGTCTC
TTGAAGTTACTAGGCTCTGATGTTAGGATTATGGGTATCTTTACAGGAATCTTTAAAGGAAATCT
TAACCGGGCCAATCTTCAAAAGGCCAATCTTCTCAGGAAATTTTCACAGGACCATCACAGGACCA
ATTGACCGAGTTACCGGCTGTCCCAACACTTTCTTTTTCGGCTTCATTCCGTTTTCTTTCCGTTT
TTTTATTTTCTTTTTGTTTCTTCCGTTATTGGCTTGATGGTCACCCGGTAGGCGGGACGGACGCC
GGCTCGACGCCCGGATCACCGCTGTAGGCCAGGGTGCCCGTATCTGCCGTGGGAACCGCCGTATA
TGTTGGTAAAGCACGCGGTGGGGACAATGGGGATCGGCGATTATT
Found at i:8575 original size:15 final size:15
Alignment explanation
Indices: 8557--8622 Score: 132
Period size: 15 Copynumber: 4.4 Consensus size: 15
8547 TGGCGGAATT
8557 GAGCCTGGCAAAATC
1 GAGCCTGGCAAAATC
8572 GAGCCTGGCAAAATC
1 GAGCCTGGCAAAATC
8587 GAGCCTGGCAAAATC
1 GAGCCTGGCAAAATC
8602 GAGCCTGGCAAAATC
1 GAGCCTGGCAAAATC
8617 GAGCCT
1 GAGCCT
8623 AGCGGGATTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 51 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.14
Consensus pattern (15 bp):
GAGCCTGGCAAAATC
Left flanking sequence: Indices 8057 -- 8556
CCACCACCCCGACCCCGCTGTAGTACATGAAAATGGGCTGGAGCGGGAGGAGAAACCGGATCTCC
TTGTGGTCGATGCACGAAAAGCCCACCACGACGAGAAGCGCCGCCACCGAGAGCTGGGAGAGCCC
TCCGAGGTACACTCCGACTGCCATGAACGGAAGATACGCCATCGCCATCATGGGCACCGCCTGGC
CCACGTAAAAGTGCCAGGGAGCGGTCCCGTAGAACACCAGGAGGTTGTTGACCACGTTGAACCGG
AGAAAGTTGGCCATGGGCACGGTCCACTGGCCGTAGAACTGGCGGTCGACCACGGCACAGACTCC
CACCACCGCCACGAGCACCGCCAGGGCCACCGCAAGAAGCCTCGCCCGTCGTCTGGTGCGGCCCA
CGAGCGCCAACCCGAGGGGGGCCCAGAGCAACGCGTTGGTGGGCCGGATGACACAGCTGAGGTAC
GCCAACGCGAGCGAAGCTACGAGGCCAACGGAACTTGGCGGAATT
Right flanking sequence: Indices 8623 -- 9122
AGCGGGATTATTGATTTATTCGCGCTTTGGGTCTTTTTCGCGCTGTTGGTCTTTTTCGAGCCTTT
GGTAGTCTTTTTCGAGCCCTTGGACCCGTTCTTGGTTCCCTTTTTAGCTCTCTTGGTACCCTCGC
TAAACCACGGCCAAAACACCATCGCCCCCACCGTAAGCACCGTCTCGAACCCGTTCGCAAACGAC
CGCGTCAGCACGTACCAGTTGAACGGGTTGAAAAGCGACAACCCAAGCGCCACCCCGGCCGTCTT
CTCGTCGTGGTACGCCCCCACCCACTTGTACAACGCCACCTCGCCCACCGCCGCCACCATCGCGT
TGATCAACTTGGGCACGAGCACCACCGCACGTGCGCGGTCCGTCCCCACCGCGCGCACGAGCGAG
TAGCCCACCATGTACACCGCCGGGTGCACCAGCAGCCGGAGCTGCTCGGGCCACTCCCACGTCTC
GTACCCGTAGCCAAACACCTTGACGTGGGCGATCTCGAGCGCCTG
Found at i:8664 original size:18 final size:18
Alignment explanation
Indices: 8641--8701 Score: 70
Period size: 18 Copynumber: 3.2 Consensus size: 18
8631 TATTGATTTA
8641 TTCGCGCTTTGGGTCTTT
1 TTCGCGCTTTGGGTCTTT
8659 TTCGCGCTGTT-GGTCTTT
1 TTCGCGCT-TTGGGTCTTT
*
8677 TTCGAGCCTTTGGTAGTCTTT
1 TTCGCG-CTTTGG--GTCTTT
8698 TTCG
1 TTCG
8702 AGCCCTTGGA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
18 22 0.59
19 5 0.14
21 10 0.27
ACGTcount: A:0.03, C:0.21, G:0.26, T:0.49
Consensus pattern (18 bp):
TTCGCGCTTTGGGTCTTT
Left flanking sequence: Indices 8141 -- 8640
AGCCCACCACGACGAGAAGCGCCGCCACCGAGAGCTGGGAGAGCCCTCCGAGGTACACTCCGACT
GCCATGAACGGAAGATACGCCATCGCCATCATGGGCACCGCCTGGCCCACGTAAAAGTGCCAGGG
AGCGGTCCCGTAGAACACCAGGAGGTTGTTGACCACGTTGAACCGGAGAAAGTTGGCCATGGGCA
CGGTCCACTGGCCGTAGAACTGGCGGTCGACCACGGCACAGACTCCCACCACCGCCACGAGCACC
GCCAGGGCCACCGCAAGAAGCCTCGCCCGTCGTCTGGTGCGGCCCACGAGCGCCAACCCGAGGGG
GGCCCAGAGCAACGCGTTGGTGGGCCGGATGACACAGCTGAGGTACGCCAACGCGAGCGAAGCTA
CGAGGCCAACGGAACTTGGCGGAATTGAGCCTGGCAAAATCGAGCCTGGCAAAATCGAGCCTGGC
AAAATCGAGCCTGGCAAAATCGAGCCTAGCGGGATTATTGATTTA
Right flanking sequence: Indices 8702 -- 9201
AGCCCTTGGACCCGTTCTTGGTTCCCTTTTTAGCTCTCTTGGTACCCTCGCTAAACCACGGCCAA
AACACCATCGCCCCCACCGTAAGCACCGTCTCGAACCCGTTCGCAAACGACCGCGTCAGCACGTA
CCAGTTGAACGGGTTGAAAAGCGACAACCCAAGCGCCACCCCGGCCGTCTTCTCGTCGTGGTACG
CCCCCACCCACTTGTACAACGCCACCTCGCCCACCGCCGCCACCATCGCGTTGATCAACTTGGGC
ACGAGCACCACCGCACGTGCGCGGTCCGTCCCCACCGCGCGCACGAGCGAGTAGCCCACCATGTA
CACCGCCGGGTGCACCAGCAGCCGGAGCTGCTCGGGCCACTCCCACGTCTCGTACCCGTAGCCAA
ACACCTTGACGTGGGCGATCTCGAGCGCCTGGTAGAACTCGTCCGCCTGGAAAAACGTGGAGAGC
GTGAGCAGGTTGACGAGCCGCCACACCGCAACAGCCAATGCCAAC
Found at i:8697 original size:21 final size:21
Alignment explanation
Indices: 8671--8710 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8661 CGCGCTGTTG
*
8671 GTCTTTTTCGAGCCTTTGGTA
1 GTCTTTTTCGAGCCCTTGGTA
8692 GTCTTTTTCGAGCCCTTGG
1 GTCTTTTTCGAGCCCTTGG
8711 ACCCGTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.25, T:0.45
Consensus pattern (21 bp):
GTCTTTTTCGAGCCCTTGGTA
Left flanking sequence: Indices 8171 -- 8670
AGAGCTGGGAGAGCCCTCCGAGGTACACTCCGACTGCCATGAACGGAAGATACGCCATCGCCATC
ATGGGCACCGCCTGGCCCACGTAAAAGTGCCAGGGAGCGGTCCCGTAGAACACCAGGAGGTTGTT
GACCACGTTGAACCGGAGAAAGTTGGCCATGGGCACGGTCCACTGGCCGTAGAACTGGCGGTCGA
CCACGGCACAGACTCCCACCACCGCCACGAGCACCGCCAGGGCCACCGCAAGAAGCCTCGCCCGT
CGTCTGGTGCGGCCCACGAGCGCCAACCCGAGGGGGGCCCAGAGCAACGCGTTGGTGGGCCGGAT
GACACAGCTGAGGTACGCCAACGCGAGCGAAGCTACGAGGCCAACGGAACTTGGCGGAATTGAGC
CTGGCAAAATCGAGCCTGGCAAAATCGAGCCTGGCAAAATCGAGCCTGGCAAAATCGAGCCTAGC
GGGATTATTGATTTATTCGCGCTTTGGGTCTTTTTCGCGCTGTTG
Right flanking sequence: Indices 8711 -- 9210
ACCCGTTCTTGGTTCCCTTTTTAGCTCTCTTGGTACCCTCGCTAAACCACGGCCAAAACACCATC
GCCCCCACCGTAAGCACCGTCTCGAACCCGTTCGCAAACGACCGCGTCAGCACGTACCAGTTGAA
CGGGTTGAAAAGCGACAACCCAAGCGCCACCCCGGCCGTCTTCTCGTCGTGGTACGCCCCCACCC
ACTTGTACAACGCCACCTCGCCCACCGCCGCCACCATCGCGTTGATCAACTTGGGCACGAGCACC
ACCGCACGTGCGCGGTCCGTCCCCACCGCGCGCACGAGCGAGTAGCCCACCATGTACACCGCCGG
GTGCACCAGCAGCCGGAGCTGCTCGGGCCACTCCCACGTCTCGTACCCGTAGCCAAACACCTTGA
CGTGGGCGATCTCGAGCGCCTGGTAGAACTCGTCCGCCTGGAAAAACGTGGAGAGCGTGAGCAGG
TTGACGAGCCGCCACACCGCAACAGCCAATGCCAACTTGTAGAGC
Found at i:9906 original size:12 final size:12
Alignment explanation
Indices: 9878--9917 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
9868 AATTAACCGG
*
9878 CTTTCCAGCCTG
1 CTTTCCAGCCTA
9890 C-TTCCAGCCTA
1 CTTTCCAGCCTA
*
9901 CTTTCCACCCTA
1 CTTTCCAGCCTA
9913 CTTTC
1 CTTTC
9918 TCACCCTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.12, C:0.45, G:0.07, T:0.35
Consensus pattern (12 bp):
CTTTCCAGCCTA
Left flanking sequence: Indices 9378 -- 9877
ATTGCCCACCGTCTGCGTGCCCACTGTGATTGCCCACCGTGGGAATGCACCGTAGCTAGGTCCAT
GTGATTCCAGACACTTTTGTCTGGCTTTTGGCTTTGAGGCTCCTCGGGCCTGCTTCTGCCTGCTT
CTTATCTCCATAGTACTATTTCCGTCTCTCAGCCGCATTGGCCTTAACCCCTATTAACCATTCTT
GCCCCTGTTTCATCCCTACTCTCTCCACACAGCCTGAAACCCCCCGTGATCTGAAACAAGGTTGC
CTGTCCGTTTCGTGATCGTCTCACACAATCACCGACAATCCTCTACGATCCCACTAGCCTTTCGC
AACAATAGGCGATGGTCGACTTGAGGCGGGCTCCGGCCGGTTGACGAGCACGCACGCAGACGCAG
ACGCGTCGGGGGGAAGCACTCCATGGGCCCTGGCAGCGGCGGTAGGCTCCTACATTAGTCCGTTG
GCGTTGAGCCTGCGTTGTGCTTGCGTTGAGCTGTCAATTAACCGG
Right flanking sequence: Indices 9918 -- 10417
TCACCCTTTCTCACCCTTTCTCTCGTAGCCTCGTGGCAACCTAAAACAGTACACTAGACACCGCC
AGATACAGATGAAACCGTGCCGTTACAGGCAGTCCGACACCAACATCGAACCATAGTGACGGCAT
CATCGCCATCAGCGTAGTTGCAGGCCCCACTTTGCAGCCGAGCCAAGATCCCCGGTGCCCAGCCA
TGCATAGCCTCTAAACACCGCCCCCGCCGAAGGCTTGGCTCATCGCCCCTGACTACCGACCGCCA
CAAAGCCGTGTGTGCCCCAGGGTGTCGTCGCCTCCGCTTTTGTTGGCCTCCGTTGTGAGCCCATA
AGCCAATTGCCGACCCCGCCAGCGAAATACGAGGCGGCCCGACTAAAAACGCTAAATGCGTCGCC
GCCCGGCAAACGGGTGCGTCCAAACGTTGCTGGGGCGCCCGTCGACAGGAGGCGGAGCAGGGGAC
TGCCCCATGGTCGCAATGGACGCTGCCAGAGCCCGTCCGGGCTAC
Found at i:9924 original size:13 final size:12
Alignment explanation
Indices: 9878--9924 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
9868 AATTAACCGG
* *
9878 CTTTCCAGCCTG
1 CTTTCCACCCTA
*
9890 C-TTCCAGCCTA
1 CTTTCCACCCTA
9901 CTTTCCACCCTA
1 CTTTCCACCCTA
9913 CTTTCTCACCCT
1 CTTTC-CACCCT
9925 TTCTCACCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
11 10 0.32
12 15 0.48
13 6 0.19
ACGTcount: A:0.13, C:0.47, G:0.06, T:0.34
Consensus pattern (12 bp):
CTTTCCACCCTA
Left flanking sequence: Indices 9378 -- 9877
ATTGCCCACCGTCTGCGTGCCCACTGTGATTGCCCACCGTGGGAATGCACCGTAGCTAGGTCCAT
GTGATTCCAGACACTTTTGTCTGGCTTTTGGCTTTGAGGCTCCTCGGGCCTGCTTCTGCCTGCTT
CTTATCTCCATAGTACTATTTCCGTCTCTCAGCCGCATTGGCCTTAACCCCTATTAACCATTCTT
GCCCCTGTTTCATCCCTACTCTCTCCACACAGCCTGAAACCCCCCGTGATCTGAAACAAGGTTGC
CTGTCCGTTTCGTGATCGTCTCACACAATCACCGACAATCCTCTACGATCCCACTAGCCTTTCGC
AACAATAGGCGATGGTCGACTTGAGGCGGGCTCCGGCCGGTTGACGAGCACGCACGCAGACGCAG
ACGCGTCGGGGGGAAGCACTCCATGGGCCCTGGCAGCGGCGGTAGGCTCCTACATTAGTCCGTTG
GCGTTGAGCCTGCGTTGTGCTTGCGTTGAGCTGTCAATTAACCGG
Right flanking sequence: Indices 9925 -- 10424
TTCTCACCCTTTCTCTCGTAGCCTCGTGGCAACCTAAAACAGTACACTAGACACCGCCAGATACA
GATGAAACCGTGCCGTTACAGGCAGTCCGACACCAACATCGAACCATAGTGACGGCATCATCGCC
ATCAGCGTAGTTGCAGGCCCCACTTTGCAGCCGAGCCAAGATCCCCGGTGCCCAGCCATGCATAG
CCTCTAAACACCGCCCCCGCCGAAGGCTTGGCTCATCGCCCCTGACTACCGACCGCCACAAAGCC
GTGTGTGCCCCAGGGTGTCGTCGCCTCCGCTTTTGTTGGCCTCCGTTGTGAGCCCATAAGCCAAT
TGCCGACCCCGCCAGCGAAATACGAGGCGGCCCGACTAAAAACGCTAAATGCGTCGCCGCCCGGC
AAACGGGTGCGTCCAAACGTTGCTGGGGCGCCCGTCGACAGGAGGCGGAGCAGGGGACTGCCCCA
TGGTCGCAATGGACGCTGCCAGAGCCCGTCCGGGCTACGGGACAG
Found at i:9928 original size:10 final size:10
Alignment explanation
Indices: 9913--9939 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9903 TTCCACCCTA
9913 CTTTCTCACC
1 CTTTCTCACC
9923 CTTTCTCACC
1 CTTTCTCACC
9933 CTTTCTC
1 CTTTCTC
9940 TCGTAGCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.48, G:0.00, T:0.44
Consensus pattern (10 bp):
CTTTCTCACC
Left flanking sequence: Indices 9413 -- 9912
ACCGTGGGAATGCACCGTAGCTAGGTCCATGTGATTCCAGACACTTTTGTCTGGCTTTTGGCTTT
GAGGCTCCTCGGGCCTGCTTCTGCCTGCTTCTTATCTCCATAGTACTATTTCCGTCTCTCAGCCG
CATTGGCCTTAACCCCTATTAACCATTCTTGCCCCTGTTTCATCCCTACTCTCTCCACACAGCCT
GAAACCCCCCGTGATCTGAAACAAGGTTGCCTGTCCGTTTCGTGATCGTCTCACACAATCACCGA
CAATCCTCTACGATCCCACTAGCCTTTCGCAACAATAGGCGATGGTCGACTTGAGGCGGGCTCCG
GCCGGTTGACGAGCACGCACGCAGACGCAGACGCGTCGGGGGGAAGCACTCCATGGGCCCTGGCA
GCGGCGGTAGGCTCCTACATTAGTCCGTTGGCGTTGAGCCTGCGTTGTGCTTGCGTTGAGCTGTC
AATTAACCGGCTTTCCAGCCTGCTTCCAGCCTACTTTCCACCCTA
Right flanking sequence: Indices 9940 -- 10439
TCGTAGCCTCGTGGCAACCTAAAACAGTACACTAGACACCGCCAGATACAGATGAAACCGTGCCG
TTACAGGCAGTCCGACACCAACATCGAACCATAGTGACGGCATCATCGCCATCAGCGTAGTTGCA
GGCCCCACTTTGCAGCCGAGCCAAGATCCCCGGTGCCCAGCCATGCATAGCCTCTAAACACCGCC
CCCGCCGAAGGCTTGGCTCATCGCCCCTGACTACCGACCGCCACAAAGCCGTGTGTGCCCCAGGG
TGTCGTCGCCTCCGCTTTTGTTGGCCTCCGTTGTGAGCCCATAAGCCAATTGCCGACCCCGCCAG
CGAAATACGAGGCGGCCCGACTAAAAACGCTAAATGCGTCGCCGCCCGGCAAACGGGTGCGTCCA
AACGTTGCTGGGGCGCCCGTCGACAGGAGGCGGAGCAGGGGACTGCCCCATGGTCGCAATGGACG
CTGCCAGAGCCCGTCCGGGCTACGGGACAGCTCCTCCTCGCGCCT
Found at i:10459 original size:17 final size:17
Alignment explanation
Indices: 10437--10470 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10427 CCTCCTCGCG
*
10437 CCTCCTCTCTCGCCTCC
1 CCTCCTCTCTCACCTCC
10454 CCTCCTCTCTCACCTCC
1 CCTCCTCTCTCACCTCC
10471 TCTCGCCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.65, G:0.03, T:0.29
Consensus pattern (17 bp):
CCTCCTCTCTCACCTCC
Left flanking sequence: Indices 9937 -- 10436
CTCTCGTAGCCTCGTGGCAACCTAAAACAGTACACTAGACACCGCCAGATACAGATGAAACCGTG
CCGTTACAGGCAGTCCGACACCAACATCGAACCATAGTGACGGCATCATCGCCATCAGCGTAGTT
GCAGGCCCCACTTTGCAGCCGAGCCAAGATCCCCGGTGCCCAGCCATGCATAGCCTCTAAACACC
GCCCCCGCCGAAGGCTTGGCTCATCGCCCCTGACTACCGACCGCCACAAAGCCGTGTGTGCCCCA
GGGTGTCGTCGCCTCCGCTTTTGTTGGCCTCCGTTGTGAGCCCATAAGCCAATTGCCGACCCCGC
CAGCGAAATACGAGGCGGCCCGACTAAAAACGCTAAATGCGTCGCCGCCCGGCAAACGGGTGCGT
CCAAACGTTGCTGGGGCGCCCGTCGACAGGAGGCGGAGCAGGGGACTGCCCCATGGTCGCAATGG
ACGCTGCCAGAGCCCGTCCGGGCTACGGGACAGCTCCTCCTCGCG
Right flanking sequence: Indices 10471 -- 10970
TCTCGCCTCTTGTCGCTTAGCCTAGACCCTTTCCCTACATGCGTCGCGTGACCCTCGTATTCCCG
CGTCCTCCTCCTCTACTCCACCTCCCTGGAGGCCGTTCACGCGCCTGCCCCTGGGCGTCGCCGAA
ACGCGATCGATAGCCTAATTTTTGCTGCTTTGCGGCAAAACAGACCGCCTCGTGCAGGAGCGTTG
TTGAAAACACTCCACACTTCGCTGACACCACGGCATCTCCACCGACCTGTGCTAGTACTGCCCCT
CTCGGTTCCTCGCCGTGCCCCTCCTCCGTCCCCCGCGCCTAACGCATCACGCCACTCCCGCGTGG
CCAAGATCAGGTGACCCCGTCAACGACACCTACCACTTAACCACCACCCTCGAACCGCAACCGGA
ACCGTCCAAGATTACCCCGAGTGCTCCCATGGCGGACGCCTCAAGGACCCACATGTTCTTGATGG
ACGAGTTCGTCGACGTGATCCGCCTCATCGAGCAGTCCCACTACT
Found at i:13760 original size:146 final size:145
Alignment explanation
Indices: 13497--13763 Score: 374
Period size: 146 Copynumber: 1.8 Consensus size: 145
13487 GACCTCTCTT
* * *
13497 TGCAACTTGGTTCTACACTTTTGTCTGTCCCGAACCGTCGAATTTGCAACCATTTAGAGTGGGAA
1 TGCAACTTGGTTCTACACTTTTGTCTGTCCCAAACCGTCGAATTTGCAACCATTCAGAGTGGAAA
* * * *
13562 ATTTAGAACGTTAGTCTACCACCATGGGTCACATTTGTTGGAACTCGGACATTTGTGCAACGGAG
66 ATTCAGAACGTTAGTCTACAACCATAGGTCACATTTGATGGAACTCGGACATTTGTGCAACGGAG
13627 ATCTTTTGATCTTTA
131 ATCTTTTGATCTTTA
* * *
13642 TGCAACTTGGTTCTACACTTTTGTCTGTCCCAAATCCTTCGAATTTGCAACCATTCGGAGTGTAA
1 TGCAACTTGGTTCTACACTTTTGTCTGTCCCAAA-CCGTCGAATTTGCAACCATTCAGAGTGGAA
* * * * *
13707 AATTCAGAGCTTTAGTCTACAACCATAGGTC-CCTTTGATGGCATTCGGGACATTTGT
65 AATTCAGAACGTTAGTCTACAACCATAGGTCACATTTGATGGAACTC-GGACATTTGT
13764 TTTCCAGTGA
Statistics
Matches: 105, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
145 44 0.42
146 61 0.58
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (145 bp):
TGCAACTTGGTTCTACACTTTTGTCTGTCCCAAACCGTCGAATTTGCAACCATTCAGAGTGGAAA
ATTCAGAACGTTAGTCTACAACCATAGGTCACATTTGATGGAACTCGGACATTTGTGCAACGGAG
ATCTTTTGATCTTTA
Left flanking sequence: Indices 12997 -- 13496
CCACTACGGGCTGAAGCTCACCCTCCACATCCGCCAGGCGCTCGACCAGGCGGACGTCATCACCA
ACTACCGGCCCGCGGTGCGCTGTCTGGTGTTCTCGGCGCAGGACGGGACCCCGGTGGTGATCAAC
GAGGAGTGGGACAACCTGGTGTACGGGGTGTTTGTCGATGTGACGCTTACGTCGCCGGGAGTGTA
TATTCTTCTTTTGGAGCGGTTCGAGGCAGGCACCGGCCGCTGCATTGTCGAGTTTGGCTGTAACA
AGGCGTTTGAAATAGGCAGTTTATAGACAATACGATATTAATGGTATGGGGTGTCAAGGCACGAA
GACATTTACAACGAGGCCCTCCGATGGTCTCTGCATCAAGTTGTTTGGCATTTTGTCTGTCACAA
ACCCGTCGAATTTGCAACCATTCGGAGTGTAAAATTTAGAGCGTTCATCTACAACCATGGGTCTC
TGCTCGGGACATTTGTTTTAAAAGGAAGAACCTCCGACCTCTCTT
Right flanking sequence: Indices 13764 -- 14263
TTTCCAGTGAAAACCCTCCAATGGCCTTTGCAACAACTCGGTTTTATACTTTTGTCTGTCCCCAA
CCCGTCGAATTTGCAACCATTCGGAGTGTCAAAATTCGGAGCGTTATTCTACATCCAAAGGTCTC
TGTTGGCTCATTTGTGGGCACAATTGGAAATTTGTTCTATTTGTTCTACCCTCGATGTCTCTGCA
ACTTGGTCGCTATTTTCTGTCACAAACCACCCGTCGATTTTGCAACCACCACATTTCCCGAAATT
TTGCAACATCCCTAAAAACTGTCGGACAAAAGCGAAGCGAGATGCAACTACCAGATGGTCAGACA
CACCTCAAAAGTCCCTACGACAGACAGTCACTAAGCTATATTTAGTATAGTAAGATAGAGAAACC
AGAGAGACATTTGCAAAAAGATCCCGCTACCCAGAACGCCCTGCGAGCGATCGTAAACGTGGTGG
CTTTTCCAAAACAAACCAGCCGAGTGAGACCAACAATACCACACC
Found at i:14560 original size:16 final size:16
Alignment explanation
Indices: 14539--14579 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
14529 TCAAGCTACT
14539 AGCCGTCGCATCCACA
1 AGCCGTCGCATCCACA
14555 AGCCGTCGCATCCACA
1 AGCCGTCGCATCCACA
*
14571 AGCCATCGC
1 AGCCGTCGC
14580 TCATCGGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.24, C:0.44, G:0.20, T:0.12
Consensus pattern (16 bp):
AGCCGTCGCATCCACA
Left flanking sequence: Indices 14039 -- 14538
AAACTGTCGGACAAAAGCGAAGCGAGATGCAACTACCAGATGGTCAGACACACCTCAAAAGTCCC
TACGACAGACAGTCACTAAGCTATATTTAGTATAGTAAGATAGAGAAACCAGAGAGACATTTGCA
AAAAGATCCCGCTACCCAGAACGCCCTGCGAGCGATCGTAAACGTGGTGGCTTTTCCAAAACAAA
CCAGCCGAGTGAGACCAACAATACCACACCCATTAAGCCCCGTTCTATTTTTACCACCGCATCAT
TCTATTTTTTTGCAACCACGTAGCAGCCGACATAAGCTGTCAAATGACAGCCAAATGACAGCCGT
TGGCCGTCTCGGAGACGTTGGGGAGCCAGTAACCGTCGAGGACCGTTCCCAGAATACTTTTACGA
AGATGCATCCACTACGGACCCGTATATGTCGGTACCAGACATCGCTAGCTCCTACCAGACACCAC
CACGCCCGTCGCCTCGCGCCAAGACAGCCCTCGCTTCAAGCTACT
Right flanking sequence: Indices 14580 -- 15079
TCATCGGTCATCACTGCAGTCATCGCTGCTGCCCACCACCAAAACGAACATCCCATCGCGTCCAA
CTACCATCCTAACCTAAGCACGATAAGCAGCCCCACTCAAATACCCACGGAGCGGGCTCCTCGTC
CGAACTCCGTCGCGAATGCAAGCCTCAACAGCATTGGCCACATTCCCGACCGTTTTCCGATAGAC
TATCGTAAACGTCGCTATCGATGATAGGTGCGTCGCTACTCCGATCCGTGGGGGCTCCAAGCATG
TTTGACACGCACAAGCCGCCGGCGTTACTTCCATTTTGGGCGTGCTGAAGTCCGCAGCTTCTGAC
TTTGACTAGCCTCAAAAATAGGGTAGCCGCGGATGCAGCTTATTGTTTGAGTCTCATGTCTTGAG
CCTTGGCAAACGCGATGGGGAGCCAGAAGTCTTCCATCCGCCCTCTGCTCCCATCACTGGTCGTA
ACCAGCTACACCCACGTGGTCCAAGCCCCTGGCCACGGCCACTTC
Found at i:16905 original size:13 final size:13
Alignment explanation
Indices: 16889--16931 Score: 79
Period size: 13 Copynumber: 3.4 Consensus size: 13
16879 AATCATTTTT
16889 CACCAACCGTAGC
1 CACCAACCGTAGC
16902 CACCAACCGTAGC
1 CACCAACCGTAGC
16915 CACCAACCGTAG-
1 CACCAACCGTAGC
16927 CACCA
1 CACCA
16932 GCAGCTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 5 0.17
13 25 0.83
ACGTcount: A:0.33, C:0.47, G:0.14, T:0.07
Consensus pattern (13 bp):
CACCAACCGTAGC
Left flanking sequence: Indices 16389 -- 16888
GACATCTTTGACGAGCTCACGAAGGAGGAGCTGATTGTGGCGGTGACCACCCACTCGGGGGCAAT
GCGGACGCAGTTGTTGGTGCTTGGCCACCGCCCGTTCGCCGTGGGCACCGGCGGGCTCATCCCAG
TGTTTGTCAAGGCCGAGAAGGTAACTAGACCCGACCAGTAGACAAGTAGATACGAAAACAATATA
ATTACAAAACAGCTGGCGACACCGCGGGATTTTCCAGGGACGGGAGCCGAATGTCGCCCACGGCG
AGCCTACGTGGCTTTGACCCGTTTTGTGGACCTCGTTTTGCCGTAGCGATAAGCTGGCCAACCCG
GGGCGCACATAGTGCATGCGTAAGGGACAGACACCCGGGGAATAAGGTTAGCGGACGTGTAGGGG
TTTAACCCAGTGGTGCTGGTACACAGTGGATACTGAGAGGGTCGCTCGGCAATCCCACCGGGCGT
ACAGGGGGCGAAAGCTCGAAGTGGAATTTTTCACGAATCATTTTT
Right flanking sequence: Indices 16932 -- 17431
GCAGCTAAAATTTTTCAACCCCACCCGTTTTTGTCACACACACCGCTCACACGAGCTGCGGGCTG
CAGTAGGTCGGGGATTAGCCACCGGTCGGTTGACTCGAGACATATTATCACGCCCTGCGGTTAGA
TTGGTCTAATACTTTTACGTAATCCGCTGACCCGAGTGTTTGTGGCTAGAGCGTTGACAACGGCC
CAGAGCAACACGGCAAGCAACCCACGCACAATGACCGCCACCGAGCGGACGGGCCCCGGTTTGTG
TACGGGTGCAGAAACCCCACCCTCCGGATGCCTCGTCCCCGGGTATCCGTCGTGGGTGTCGACAG
CTGAATTCCGACACTACGATCGGTATTGACCCGGGTACGAGCCCCGCCGCACACACAGAATTCTT
CACAGAAAATAACTGTGGTCCAGAAAATATCCACTGCAACGACACTACCCCTTGGGTCCCCCAAA
CCGCCTTGGCGGCGACACCTCCACAAAAAAAGACTCAAATAAGCG
Found at i:23049 original size:11 final size:10
Alignment explanation
Indices: 23033--23091 Score: 57
Period size: 11 Copynumber: 5.7 Consensus size: 10
23023 AGCGTGCTAT
23033 AAAGCACTAC
1 AAAGCACTAC
*
23043 GAAAGCACTGC
1 -AAAGCACTAC
23054 GAAAGCACTA-
1 -AAAGCACTAC
* *
23064 AAAGTACTATA
1 AAAGCACTA-C
23075 AAAGCACTAC
1 AAAGCACTAC
23085 AAAGCAC
1 AAAGCAC
23092 ATCTACCCAG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
9 8 0.20
10 7 0.17
11 26 0.63
ACGTcount: A:0.49, C:0.24, G:0.15, T:0.12
Consensus pattern (10 bp):
AAAGCACTAC
Left flanking sequence: Indices 22533 -- 23032
GAGTAGATGAAGGCGTCGCACACCACCCGGCCCTTCAGGTTCAAAAACATCAGATTGACCCCGTC
CCGCGACACCGTGATCTGGTTGAGCGGGTCGTAGATGTCCTCGTGCATCAACCCCCAGTTGGTAT
GGATGTCCACCTCCTCTAGCTTGTGGGAGTCGTCGTTCAAACTGATGGTGTGCTGCTTTTTCTTT
TTGATGTCGGGCAAGAACCGCAGGGTGACCAAGCCATTGACGAACTTGGTGGCGTCGGGGCCTTG
GATGCGCACGATCCGCTTGGAAAGCTGGGCTAACCCTCCTATCGGAACCATGGTGTGTGTCGCAC
TAAAAAAAGAGCAACACCACCTTGATGGTGGGAGCGCGAGCGTGCACACGGCAGGGCAGCGGGAG
ATTGAAGATGGTAAGGAGGGTAGTGTAGTGGTAGGGAGGATGTAATCAGCTCAATGGATCACTGG
ATCATTGGATCAGTTGTTAGGAACTAGACATGCGGAGCGTGCTAT
Right flanking sequence: Indices 23092 -- 23591
ATCTACCCAGATCAGACAAACCAAACACCACAAAACACGAATCAAAACACTACTTAAGGACACGA
CAGCCCACTATTTTGAATGCGCTATTATTATATGCTACCCGCCTGCCTAGGAAGGAGCTCTTCCC
CGTAATTCGCTTTGTTTTTGCTTCGGTCAGTGTCGGAGCGCTTAAGTAATCGGCTATGTAACGGT
GACGTTCCACGACACACCGAACAATGTAGATACACATCAGGTAACCTTGGGTAACCTTGGTGGTC
GTAGAATACGGTGGTCGCGTGCCACGACACCGTCGCCTACCCTAATTCTTCCGTCGCTCATTCTC
GCGACATTTGGCGTCCCTTCCGGTGGCGTACGGGCCTTAGACGGAGTTACTACCACGGCGTTACT
GCGTGGTGGTCACTCCGACGACGCCCATTTTTGCATCTCCAAACGGTGGCAAATTGATTAAAGTT
TACGAACTTCCCCACGTCCTCAGGACGATACCGGGTGGTCCCGGT
Found at i:30713 original size:21 final size:21
Alignment explanation
Indices: 30678--30736 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
30668 AAGAGAGTGG
30678 GAAGTAAAGAA-GGGAGAAGT
1 GAAGTAAAGAAGGGGAGAAGT
*
30698 GAAGTAGAGAAGGGGAGAAGT
1 GAAGTAAAGAAGGGGAGAAGT
30719 GAAGTAAAGAAGGGGAGA
1 GAAGTAAAGAAGGGGAGA
30737 CGAGAAAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 10 0.28
21 26 0.72
ACGTcount: A:0.47, C:0.00, G:0.44, T:0.08
Consensus pattern (21 bp):
GAAGTAAAGAAGGGGAGAAGT
Left flanking sequence: Indices 30178 -- 30677
GGACCCGCACGCGTACATTCTGGGCGACATCATCGAGTGCATGGCTGCGTCCGACAACGTGGTGC
GGGCCGGGTTCACTCCCAAGTTCAAGGACGTGCCCAACTTGGTGCTGATGTTGACGTACTCGTAC
GAGCCCATCGAGAAGCAGAAGATGCCCACCAAGCCGTGCGAGCTTGCGCTGGGCGACGCGGCCAA
GTGTCTCGTGTTTGACCCTCCCATCGACGAGTTTGCCGTGCTCCAGACGGTGGTGGACGCGGGCA
AGCAGCACTTTGACGGGTTTGCGGGGCCGTCGATCATCATCGGCACCAACGGCGCGGGCAAGCTC
GTGGCCGACGGCACCGAGCACGAGTTCCGCCGCGGGTACGTGTTTTTCGTGGCTCCCCACACCGC
CATCGACTTGGTGGCCACCGAAGCGGGCTTCACCACCTACCGTGCGTACGTTTAGTAGCGGGCTA
GTTAATAATAAAGATAGAAGGGAAGGATGAGAAGAAAGAGAGTGG
Right flanking sequence: Indices 30737 -- 31236
CGAGAAAAAGAGAAAAGAGAAAACAGACACACTAGAGGGTGTGATCACAGGTGTAAGAGGCGGGT
GCTTGGTGGTGACGTAAACTAAAAGGTGTAACCTACACCAAGTTGGTTAGAGCTAGGGTGTTCCA
AATGCTAAAAAGTAACGATTAATGCTGCTCGCTTGTTGGTGGACTGCACGTCCCCTAGCGATAGG
TATGAACGTAGACGTTGCTCAGTTGCTCTGATAGCACACTTCTCGTCCTGGTCTTGATCCTACAG
TACTGGTATTAACCCTTCAAATGGGTCGCCAACCCATGAATAGGCACGGTGGGCTGTTTGATACC
ATCGGTCTTTGATACTTGGTTTCTGTTCACTCGTACCTAAGAACATTTTACCACGCGTAGTCCTC
CCGTTAGTCTTCTCACGGTGCGCGATTGGTGCACATTTCCCTTTTGGGACGATATACGTAGACAC
CATTCAAACGATTCAGACACCACCCTAGAGACAACCAGGTCAATC
Found at i:30750 original size:21 final size:22
Alignment explanation
Indices: 30685--30750 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 22
30675 TGGGAAGTAA
* *
30685 AGAA-GGGAGAAGTGAAG-TAG
1 AGAAGGGGAGAAGAGAAGAAAG
* *
30705 AGAAGGGGAGAAGTGAAGTAA-
1 AGAAGGGGAGAAGAGAAGAAAG
*
30726 AGAAGGGGAGACGAGAA-AAAG
1 AGAAGGGGAGAAGAGAAGAAAG
30747 AGAA
1 AGAA
30751 AAGAGAAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 6 0.15
21 32 0.82
22 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.42, T:0.06
Consensus pattern (22 bp):
AGAAGGGGAGAAGAGAAGAAAG
Left flanking sequence: Indices 30185 -- 30684
CACGCGTACATTCTGGGCGACATCATCGAGTGCATGGCTGCGTCCGACAACGTGGTGCGGGCCGG
GTTCACTCCCAAGTTCAAGGACGTGCCCAACTTGGTGCTGATGTTGACGTACTCGTACGAGCCCA
TCGAGAAGCAGAAGATGCCCACCAAGCCGTGCGAGCTTGCGCTGGGCGACGCGGCCAAGTGTCTC
GTGTTTGACCCTCCCATCGACGAGTTTGCCGTGCTCCAGACGGTGGTGGACGCGGGCAAGCAGCA
CTTTGACGGGTTTGCGGGGCCGTCGATCATCATCGGCACCAACGGCGCGGGCAAGCTCGTGGCCG
ACGGCACCGAGCACGAGTTCCGCCGCGGGTACGTGTTTTTCGTGGCTCCCCACACCGCCATCGAC
TTGGTGGCCACCGAAGCGGGCTTCACCACCTACCGTGCGTACGTTTAGTAGCGGGCTAGTTAATA
ATAAAGATAGAAGGGAAGGATGAGAAGAAAGAGAGTGGGAAGTAA
Right flanking sequence: Indices 30751 -- 31250
AAGAGAAAACAGACACACTAGAGGGTGTGATCACAGGTGTAAGAGGCGGGTGCTTGGTGGTGACG
TAAACTAAAAGGTGTAACCTACACCAAGTTGGTTAGAGCTAGGGTGTTCCAAATGCTAAAAAGTA
ACGATTAATGCTGCTCGCTTGTTGGTGGACTGCACGTCCCCTAGCGATAGGTATGAACGTAGACG
TTGCTCAGTTGCTCTGATAGCACACTTCTCGTCCTGGTCTTGATCCTACAGTACTGGTATTAACC
CTTCAAATGGGTCGCCAACCCATGAATAGGCACGGTGGGCTGTTTGATACCATCGGTCTTTGATA
CTTGGTTTCTGTTCACTCGTACCTAAGAACATTTTACCACGCGTAGTCCTCCCGTTAGTCTTCTC
ACGGTGCGCGATTGGTGCACATTTCCCTTTTGGGACGATATACGTAGACACCATTCAAACGATTC
AGACACCACCCTAGAGACAACCAGGTCAATCACAAAGGCACGGCA
Found at i:34315 original size:32 final size:32
Alignment explanation
Indices: 34279--34342 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
34269 CACTCCATTT
*
34279 CTCTCAAATCACAGCCACTAAGCCTTCCATCC
1 CTCTCAAATCACACCCACTAAGCCTTCCATCC
* *
34311 CTCTCAGATCACACCCAGTAAGCCTTCCATCC
1 CTCTCAAATCACACCCACTAAGCCTTCCATCC
34343 ATTCACCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.44, G:0.08, T:0.22
Consensus pattern (32 bp):
CTCTCAAATCACACCCACTAAGCCTTCCATCC
Left flanking sequence: Indices 33779 -- 34278
AGTCACGTGACTCCAATGCCAAATATAGTAGCACTATATGGAAACCAGAGCCCAAGCGTCCAGAA
AGCGTTACAGTCGTGGTTTCAACCACTCAGATTCTTGCTGGGCACGTTGTCGGTCCATTCTCCCC
TGGGACCCTTCCTTCAACAATGACCCTCAAGACATGCATAGGTTGACCAAACTGTGTGGGGATGA
GGACACCGTATAGTGTTGTGGGCAATATCTGTCCCTCTTGTGCATTTTTAGTTGCTGCCTCACTC
GCTACACCACTTTATTACACCACCCGTCAAAAGTTTACATTCTGAAAAGGGTATTCTCCTAAATT
AGACCTAGTTTCGAAAGCATGTCCACAGTGTTGAGATCAGATGAATCAGATAAAGCAATTGCCCC
ACTCGCTCCACGTCACTCCAAAGCTTTGACGGCCGCAGTTTGCCTCGCCCAGTTCCACGCCACCA
GTATCACTCCACAAGTAGAGTAGCGACAATTACACCACTCCATTT
Right flanking sequence: Indices 34343 -- 34842
ATTCACCTATCCATCCCACCCCAACCACACCATACTTGGCCCACCGATCCCCCCACAATCCTATT
TTTAACCCTCGCTGTGACGCTAACGCGTCCCACACCACCCTCGGAGATCGACCCAGCCGGGCCGC
CCGCAAAGGCGGTATACCTCCGTCACCACGCATCGGCTGTGCCTCATTTGCCTTATTGAGCTGGT
GCTCACACCATACATGCCTCAGGCCATGTGACACCCACAACGTGGCCAAACCCGTGAAAAATCAC
GTTGTCTCGCCAAAACACCTACAATCGCCAGTCACCCACCTCTTCACCACCCTTCCCCAACCCAT
TGCCCCGCCCGGGCTGTGTCAATCCAGCAATCTCTGTCTGCACTGGCAACCGAAAAAGGGTCTGT
AGCCACACCATCGCACAACCGCGCAAAACCCACGCCCACGCCACTCCCACCACCCAAACTAAACC
ACCTCTACCCTCCCTCACCCTCTCCCACCACACTACACCACCCGC
Found at i:35387 original size:6 final size:6
Alignment explanation
Indices: 35334--35377 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
35324 CCGGGGTAGA
* * * *
35334 GGCCGT GGTCGT GGTCGT GGGCGG GGCCGT GGCCGT GGCCGT GG
1 GGCCGT GGCCGT GGCCGT GGCCGT GGCCGT GGCCGT GGCCGT GG
35378 TGGGCGTGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.25, G:0.57, T:0.18
Consensus pattern (6 bp):
GGCCGT
Left flanking sequence: Indices 34834 -- 35333
ACCACCCGCCACCTCGTTTTTCCCCCCAGAGCCCGCCCAACGTCTGGTCCTGCCCTGCACCCTCC
TGCACACGCCCCTCTCAAAAGGCCCCGGTTTTTCACTGGCCCCACGACATGAACGACCACCATCC
CGAGGGGAGCGAAGAGGCCCACGCGGCCGCATTGTACGCTCAGCAGCAGCTCGAGGCCGCCAAGT
ACGCCCACCAACAGGAAATCGACTCTCGCCTGGTGTATGTGGGCAATGTGGACTACGAAACCACC
CCACCAAACCTCGAGGATTTCTTCACCCAGGCCGGAGAGATCGTTCGCATCACGATTTTGCAGGA
CCGGTACACGGGGATGCCCAAGGGATATGCGTACATCGAGTTCACTACGCCGCAAGCGGTGGAAA
AGGCGATTACCGAGCTAAACGGGCAGTTGTTCCGCAACCGCGAGCTCCGGGTGACGCTGAAACGC
ACGAATTTGCCCGGGTTCCGCAACCGGGGTGGTTTCCGGGGTAGA
Right flanking sequence: Indices 35378 -- 35877
TGGGCGTGGGGGCCACAGCGACCGCATGGGGGGTCCTGAGCCCGGAAACGAGCTTTACGAGGCAC
AGCTGACACCAGAGGCGCCCCAAGCGGCAGCCCCGCTGGATAGTGAGCTCACAGCGCACATGGAG
GCGGTGACATTGGAGGAGAAGGCCCCGGAGGGGGCGGACTCGAGCTAATTGTGTATATCGAGTAA
TGTATAACTTGCTGGTCAGAAGCGGGGTTCGTAGGGGTGTGGGGGCTCTGGTAAAGTGTCTGGTG
GTGTGTGTGTGGTGAAGCTGGCTACGGGTGGGTTGGGTGGTGCTCAATTGGCGTTTGTGCCCGGT
GGGCTTGTGTAATTCTCACTCTGTTTGGGTCGGTAGGGTCTGTTCGGCGATTGGGGGGACCTACG
GTGATACTTGTGAGTTCCTAGGCTGGTTTGTGGCTGTATCGATACCAGCTCGGTAGCACTCCCTA
CCACTTCTCGCCTCACTTATTACCTGTCGCTCGGGACCACCTCTT
Found at i:41269 original size:10 final size:10
Alignment explanation
Indices: 41254--41281 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
41244 GAGTCGGTTA
41254 GGTGGTTGGT
1 GGTGGTTGGT
41264 GGTGGTTGGT
1 GGTGGTTGGT
41274 GGTGGTTG
1 GGTGGTTG
41282 TAGTGTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.61, T:0.39
Consensus pattern (10 bp):
GGTGGTTGGT
Left flanking sequence: Indices 40754 -- 41253
GAAGTACCGGGCGGAGTGTCGATCAACAAGTAGTCCAAATCGTCCCACACCACGTCCTTGAGGAA
CTGCTTGATCATCGCCGTCTTTTTGGGTCCTCTCCACACCACCGAGTCGCCCCGGTTGTTGAGCA
AGAACCCGAGGGACATGAGCCAGAGCCCACCCCGGTCGGCCAGCCGCGGGTACACGTTGACAGGT
ACCCACCCGCGTGTCAGCTGGTGCACCTGTTTGTCCTCGACGCCAAACATCCGGGGAGCCAGGGG
TCCTGTGAGGTCGATGTCGAGCACCCCCACGTTGAACCCCTTGTTGACGAGGGTGAGGGCGGTCT
GGGTGGTCACCGACAGCTTTCCCACGCCGCCTTTGCCCGAGAGGATGAGCACGATGTGCTTGACG
TTCTCAAGGGACTTGGGAGTGTCCATGGTTAGTAATGCGAGTGAAAAAGATAAGGTGTGGTTGAG
GTATAGTGTGGTGTGTGGGGATAAGTAGTGGGGTAGAGTCGGTTA
Right flanking sequence: Indices 41282 -- 41781
TAGTGTTTAGTGTTGTTAGGTGGCGAGTGTGTTTTGCGGTTGTTCGTGGTGGTTTCTGGTAGGTG
TTCCATCTGGCTAGGAGCTTGATCGCACTGTGATCCTCTCGTGGAAGGAGATGGGAAAAGGCAAT
GAAGAGCCAGGAGAGGACTCTACACGTATATCATTGATGTAGCACATTCATAGATGTAGCACATA
CTCACGAATACAGTTCCAATCATCACCCACCGTCTAGCCCTAGTATTTTTCACCGTTCTTCCCTC
CACCACCACGCTAGCTACGCTCTACTACTACCAACCCACCAACCACATGAAAACACCACTGTAGC
ACTACTCCAAAGCTCCATACCTTACGCCACCTCAGTCCCCACCCCTTTTCCCCCTTTCCACGACA
CCCACCACCCACATCCCCACCACCTTATATATTCCAGCCGCACGCACTTTTCACCATGGACGCCA
AAGAGGAACAGCTCCAGGAGCTCGAGGTGATCGAGTCGATCTACC
Found at i:41467 original size:17 final size:17
Alignment explanation
Indices: 41442--41475 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
41432 TACACGTATA
*
41442 TCATTGATGTAGCACAT
1 TCATAGATGTAGCACAT
41459 TCATAGATGTAGCACAT
1 TCATAGATGTAGCACAT
41476 ACTCACGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (17 bp):
TCATAGATGTAGCACAT
Left flanking sequence: Indices 40942 -- 41441
GACAGGTACCCACCCGCGTGTCAGCTGGTGCACCTGTTTGTCCTCGACGCCAAACATCCGGGGAG
CCAGGGGTCCTGTGAGGTCGATGTCGAGCACCCCCACGTTGAACCCCTTGTTGACGAGGGTGAGG
GCGGTCTGGGTGGTCACCGACAGCTTTCCCACGCCGCCTTTGCCCGAGAGGATGAGCACGATGTG
CTTGACGTTCTCAAGGGACTTGGGAGTGTCCATGGTTAGTAATGCGAGTGAAAAAGATAAGGTGT
GGTTGAGGTATAGTGTGGTGTGTGGGGATAAGTAGTGGGGTAGAGTCGGTTAGGTGGTTGGTGGT
GGTTGGTGGTGGTTGTAGTGTTTAGTGTTGTTAGGTGGCGAGTGTGTTTTGCGGTTGTTCGTGGT
GGTTTCTGGTAGGTGTTCCATCTGGCTAGGAGCTTGATCGCACTGTGATCCTCTCGTGGAAGGAG
ATGGGAAAAGGCAATGAAGAGCCAGGAGAGGACTCTACACGTATA
Right flanking sequence: Indices 41476 -- 41975
ACTCACGAATACAGTTCCAATCATCACCCACCGTCTAGCCCTAGTATTTTTCACCGTTCTTCCCT
CCACCACCACGCTAGCTACGCTCTACTACTACCAACCCACCAACCACATGAAAACACCACTGTAG
CACTACTCCAAAGCTCCATACCTTACGCCACCTCAGTCCCCACCCCTTTTCCCCCTTTCCACGAC
ACCCACCACCCACATCCCCACCACCTTATATATTCCAGCCGCACGCACTTTTCACCATGGACGCC
AAAGAGGAACAGCTCCAGGAGCTCGAGGTGATCGAGTCGATCTACCCGGATGAGCTCGAAAAGTT
CTCCGACACCCGTTTTGCGGTGACCATAGCCCTCGACACAGGCTCCGAACGTCGCCACGAGATGG
TGTTGACCGTGTCCTACCCAGAAGCCTACCCAGAGGTGAAGCCCGAGTTGGACCTCGAGGCGATG
GTGGAAGAAAAGGAGGAGGAAGACGACGACGAGGACGACGGGCCC
Found at i:45802 original size:3 final size:3
Alignment explanation
Indices: 45794--45821 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
45784 GCGCGAGCTT
45794 CAC CAC CAC CAC CAC CAC CAC CAC CAC C
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC C
45822 GCGAGGTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Left flanking sequence: Indices 45294 -- 45793
AGCCCCATGCCTTAATTGAAAAAATTCCCTCCTTCCTTAACTTCCCACCCCTCCTAGCACCCTCG
TAGCACCCAAGCAGTCCTAAGCAGTCCTCTTTCTCTTTTCTCCCTTCTAAAACTATGCATTACTA
TATACGTTTACTTCAAGTCCACCGACACGTTGGCCTCGCTGGCCTCGCTGGCGTCGTCGTGCTCC
ACCGCACTCACCCACTGCCACACCTTCAAGATCTCGCCGTGCTCCTCGACGATCTTCGCCACAAT
GTTCGTGTTTTGCTCCACCCGCGCCACCACCTGCTTCCAGAGACTCACCCGCTTCTTCAAGTTGT
GCTCGTTCGCCAAAATAGCATCACGCAACTGGATCGACCCCATGGCCGCCAGCTGGCCGGGCTCC
GCCGCCGCCCGCCGCGCCTGCAGATGCAACCGCTTCAACACGTCCTTGTAGATGATGTCGATCTT
GAGCTGGCGCAACTGGTAGCGGTGGAACGCCACCTGCGCGAGCTT
Right flanking sequence: Indices 45822 -- 46321
GCGAGGTTCCACTTGAACCGCGCTACCAGGCCAAGAACGGAGTTGCGGAACTGGCACCCGACCGA
GAGGTTTCGTAGGGACGTCGATCGAAGAAGCGCGTCCGCCGGGTCAACGTGCGCGTCCTCGTGGT
GAGCGTCAACAACTCCAAGTTTCGCGGAAGGTACCGTTGGAGGTCGGACCTGCAAAGTTAGTATA
TCTCTAGGGGAACCGGTCTGGGGTACTTGCCTTACAATTATCTCGGGCTCCTTGGCCAACTCGTC
CACCAGCCGCCGCCACAACTCCTCGAACTCCGCCTCGGTGATGTACGGCGCCTTCATCTCAAGCA
AGAAATCGTGCAAGTCGCGCGCCAGGATGCCTGCGACGTCGTCGGGGGCCCGCCCGCACTGGCGC
CGGGCGTTCTTCTCGCGCAAGAGGTCCTTGGCGTTCTCGATCATGAGCTCAAGCTTCTCGGCCTT
CTTCAGGTCGGGCACGCACCGGCGATTGCCGGGGAACAAAAAGTT
Found at i:46720 original size:30 final size:30
Alignment explanation
Indices: 46684--46753 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
46674 GAGTCTTCCG
* *
46684 GGGCGGTTTC-GGTCTTTTTCGGGGTGGATT
1 GGGCGGTGTCTGG-CTTCTTCGGGGTGGATT
46714 GGGCGGTGTCTGGCTTCTTCGGGGTGGATTT
1 GGGCGGTGTCTGGCTTCTTCGGGGTGGA-TT
*
46745 GGCCGGTGT
1 GGGCGGTGT
46754 GGACCGGGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 23 0.66
31 12 0.34
ACGTcount: A:0.03, C:0.16, G:0.46, T:0.36
Consensus pattern (30 bp):
GGGCGGTGTCTGGCTTCTTCGGGGTGGATT
Left flanking sequence: Indices 46184 -- 46683
GTCGTCGGGGGCCCGCCCGCACTGGCGCCGGGCGTTCTTCTCGCGCAAGAGGTCCTTGGCGTTCT
CGATCATGAGCTCAAGCTTCTCGGCCTTCTTCAGGTCGGGCACGCACCGGCGATTGCCGGGGAAC
AAAAAGTTGTTCCACGGCCGGTGCTCGATAAAGTCCTCGTAGCACCCGAGCTCGAGGTTGGCGAA
GCACCGCGCGTGCTGCGGGCAGGGGATGCACTCGGGCCGCGCGTGCGAGTCGAGCCACACCCCCA
ACGCGCGCACCACGGGCTCCGGGCGGCTGCTGAAGGTGGTGGTGTTGATCTCGTGCCCACAGTAG
CCGACGATGTAGAGCTGCTGGTAGTACCACGCGCCAAAGAGCCCCGCGCCCGCGAGGAAGAGCCA
CGCCGCAAGCGTGAACACCACGGGCACCACCGTGCGGAGCCACAGCGAGCGCGTGGTTTCGTCGT
CGGAGTCCGAGTCGAGCGCCGACGAGTCCGAGTCCGAGTCTTCCG
Right flanking sequence: Indices 46754 -- 47253
GGACCGGGCCGAGGCCCCCGAGGCCGTGCGAGGGGTGGTTCGCACCAGCTTCACCTCCTTCAAGG
GGGTGTCCTTGACCTTGGCGGGGGTGGCCCGAGCCAGCACAGCGCGCAGCGACGCGCGCGGGGCC
TTGGCCGGCTTCAGCGGGGTGTCCGCCGCGGGCGAAGCCTTCGCCAGCGCTGCCAGGCGCGTCAG
CCGCGGGGTGGCGCGCGATCGCGCCAGCTTCGGGGTCAGGCCCACGCGCGACACCTCCATCGGGT
GGATGGTGGAGTCGCTCTCGTCGTCCGACAGCACCTCGCTGGCCACCGGCACCAACCGCGGCTTC
GGGGTGAGTTTGACCCGCGGGGACCCGGGCCACGAGCCCTTGGACGGGGTGTCCTCGGCAAACGA
CACCTCGGGCGCGGAGGGCTCGACCACGTGGTGTTTCAAGCGCAACGGCGAGGCCCGCCGGCGCG
ACGGCGTGTGCTCGATGGGGGTGTGGATCACGGTGTCGTCGTCGA
Found at i:49711 original size:11 final size:11
Alignment explanation
Indices: 49692--49722 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
49682 CGCCCACAAA
*
49692 CCCTACCACGC
1 CCCTGCCACGC
49703 CCCTGCCACGC
1 CCCTGCCACGC
49714 CCCTGCCAC
1 CCCTGCCAC
49723 CCTCGCCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.13, C:0.65, G:0.13, T:0.10
Consensus pattern (11 bp):
CCCTGCCACGC
Left flanking sequence: Indices 49192 -- 49691
CGGGGCCGCCCCCGAGCCAAGCGCCACAGAACCGAGCCCCTGGCTTACCCCGGCCGCTCGCCAGT
TTGTGACCCGCTCCCGCTCCACGCAGGCCACATTGGCCCATGTTAAGCCCACTTGCCCAGTCCAG
GAACCTCACCATCGCTAGCTGCATGCAGTCCGAGTGTTTACCCCACCTAATAATTAATGCCCCGT
GGGCTCCCGGGCACGCAACCGGGCCACCACGACTCGAGCCCGCTATTGTGGGCCTAGCGGTAGAC
GAGGCTCAATGGGGCAGACGCGTGGCGGTGGCTCCGCGGTAAGCACGGGTCTTCGTATTTGGGTG
AATGACCCCGGCCATGTGGGCCCCAGTGGACCCTGTAGACGTCATCTCCACACGAGAATGACAAT
TAGTGTCGAGCCGCAACACCCCTATCTATTGTACGACCGTCACGCCAGCAACACGCCAACGTGGG
CTAAAGCCGTTCCGGCGCTACACTGCCCACCCACACGCCCACAAA
Right flanking sequence: Indices 49723 -- 50222
CCTCGCCAACGTGCACCCCGTGCTCCCCGTGTGCCCCAGCGGTCATTGTGCTACTCTCTTAAGCA
CCCGCCACGCCCAAACTGGATCTGACAGGGGCACGTGGTGGCCGGCAGCTGCCGCCGTATGCACC
TGGGCAAAGAAATCTGGCGGCAGCAAATGATGTGCCTCGTGCATACACCGCACCGCGAAAATATA
TATACCGAAGCCCGTGCAGTCGCGGGTTTTTTCGTGGTGTGTGGTTAGGCTCTAGCAGTTGGTAG
TGTCGACCATAGAAAAAAGAAATTCGCATCTTCCTGATCTCCACGCATGGACCCGAGCTAGCCCG
TTAGCCATGAGTTTGATCCAGATATCGACTCCAATACCCTCACCGAATGCCTCGGTGTACAACCA
CATCCTGCCCAAAATGCCCACGCTGACCCCGCCGCTGGGGGGCTCGGGGTCGCTCCGACCGCCCG
CAAAGCCTAGGGTCGACCTGTTTTTGGCCCAGTACATCAAACAGA
Found at i:51108 original size:15 final size:16
Alignment explanation
Indices: 51085--51127 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
51075 TTAGACAGGA
*
51085 GGACTACGACGAC-AT
1 GGACGACGACGACGAT
51100 GGACGACGACGACGAT
1 GGACGACGACGACGAT
51116 -GACGACGACGAC
1 GGACGACGACGAC
51128 TACGATGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 24 0.92
16 2 0.08
ACGTcount: A:0.33, C:0.28, G:0.33, T:0.07
Consensus pattern (16 bp):
GGACGACGACGACGAT
Left flanking sequence: Indices 50585 -- 51084
GACCCGCGGCCCGAGACCCTGGCCGCCACCAACCAGTTGCTCACCCGCTACCACTCGCGCACCCC
GCCCGCCATCTCCACCGCACGCTACTTGGCCCGGTTGGTCAAATTCAACAACTTCAACCAGGCGA
CGTTGCTCACCACCATCTACTACATCGACTTGTTGCTGCACCAGTACCAGCCGTTCTTCACGCTT
AACTCGTGGACGGTGCACCGGTTCTTGCTTGTGGCGACGATGATCCTGCAAAAGCTGATGGAGGA
CTTTTTCTACACCAACGACCACTACGCCAAGGTGGGTGGTGTGGCCATCAGCGAGTTGAACTGTC
TCGAGCTCGACTTTTTGCTGCGGGTGGACTGGCGGTGCATTCCTGCCAAGCAGGTGGGGGGGCAC
CTGAGCATCAAGTACGCCAAGGACGTGTTGGACTTGTACTACACCCAGTTGGTGGAGCTCATGGG
CAAGAACGCGCTGGGCGGCGACAATTTGCATTACTTTAGACAGGA
Right flanking sequence: Indices 51128 -- 51627
TACGATGAGCCCGAGCCGTACGAGCCCGAGGCTCCGGCGCAGGCCTACGACGAGCGGGGCTACCT
GCTTAATGGCAAGTCGTCGCCACACTTGAAACGACGCTACTCGGAATAGGATAATAGGTTTTTAT
ATACGGTTTGGATAGGAATAAAGGATAGGAATAAGGTTAGGAATAATGAAGAGTTGGGATGAAGA
GTTGAATGTGGAGTAGTTTGGTTTATTGGTTCTACGTGAGGAGCCAGTAGGGGAGGCCTAAACAC
CAGTGGACGAGTTTCAGGTCGACATCACTTTAATTAGTTTCAGGCTATTAACACACCAGTTTGAT
TAGTTTCAGTACCACACCGCTTTGAATCATTTCAGTACCACACCGCTTTGAATCATTTCATGTTG
TGACACCATCTTGATTAACTGTGGCACCAGTTAATTAGTTTCAGGTTGTGACATTAGTTCTAGGT
TGTGACACTAGCTCAGCCGGTGACACCAATTCACATGTTTCATTG
Found at i:51283 original size:13 final size:13
Alignment explanation
Indices: 51267--51303 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
51257 TATACGGTTT
51267 GGATAGGAATAAA
1 GGATAGGAATAAA
51280 GGATAGGAAT-AA
1 GGATAGGAATAAA
*
51292 GGTTAGGAATAA
1 GGATAGGAATAA
51304 TGAAGAGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.32, T:0.19
Consensus pattern (13 bp):
GGATAGGAATAAA
Left flanking sequence: Indices 50767 -- 51266
GTTCTTCACGCTTAACTCGTGGACGGTGCACCGGTTCTTGCTTGTGGCGACGATGATCCTGCAAA
AGCTGATGGAGGACTTTTTCTACACCAACGACCACTACGCCAAGGTGGGTGGTGTGGCCATCAGC
GAGTTGAACTGTCTCGAGCTCGACTTTTTGCTGCGGGTGGACTGGCGGTGCATTCCTGCCAAGCA
GGTGGGGGGGCACCTGAGCATCAAGTACGCCAAGGACGTGTTGGACTTGTACTACACCCAGTTGG
TGGAGCTCATGGGCAAGAACGCGCTGGGCGGCGACAATTTGCATTACTTTAGACAGGAGGACTAC
GACGACATGGACGACGACGACGATGACGACGACGACTACGATGAGCCCGAGCCGTACGAGCCCGA
GGCTCCGGCGCAGGCCTACGACGAGCGGGGCTACCTGCTTAATGGCAAGTCGTCGCCACACTTGA
AACGACGCTACTCGGAATAGGATAATAGGTTTTTATATACGGTTT
Right flanking sequence: Indices 51304 -- 51803
TGAAGAGTTGGGATGAAGAGTTGAATGTGGAGTAGTTTGGTTTATTGGTTCTACGTGAGGAGCCA
GTAGGGGAGGCCTAAACACCAGTGGACGAGTTTCAGGTCGACATCACTTTAATTAGTTTCAGGCT
ATTAACACACCAGTTTGATTAGTTTCAGTACCACACCGCTTTGAATCATTTCAGTACCACACCGC
TTTGAATCATTTCATGTTGTGACACCATCTTGATTAACTGTGGCACCAGTTAATTAGTTTCAGGT
TGTGACATTAGTTCTAGGTTGTGACACTAGCTCAGCCGGTGACACCAATTCACATGTTTCATTGT
CTCTAACGTTTCACCCCTGCTACAGTTTGTACAACTACCTCACCGTAGCTGTGTGTGCCCTTGGC
TGTTTGTGCCCGTGGCTTTGCGCTCGTTTCACGAAGCTTCTCGGTGCTTTGTGCCACCAGATTAC
GACTACCCTTCGCTACCGCAAATGAGCGCAAAGGGGCCAAAACGC
Found at i:51476 original size:26 final size:25
Alignment explanation
Indices: 51439--51512 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 25
51429 AGGCTATTAA
*
51439 CACACCAG-TTTGATTAGTTTCAGTAC
1 CACACC-GCTTTGATCA-TTTCAGTAC
51465 CACACCGCTTTGAATCATTTCAGTAC
1 CACACCGCTTTG-ATCATTTCAGTAC
51491 CACACCGCTTTGAATCATTTCA
1 CACACCGCTTTG-ATCATTTCA
51513 TGTTGTGACA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 1 0.02
26 41 0.91
27 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.32
Consensus pattern (25 bp):
CACACCGCTTTGATCATTTCAGTAC
Left flanking sequence: Indices 50939 -- 51438
TGGCGGTGCATTCCTGCCAAGCAGGTGGGGGGGCACCTGAGCATCAAGTACGCCAAGGACGTGTT
GGACTTGTACTACACCCAGTTGGTGGAGCTCATGGGCAAGAACGCGCTGGGCGGCGACAATTTGC
ATTACTTTAGACAGGAGGACTACGACGACATGGACGACGACGACGATGACGACGACGACTACGAT
GAGCCCGAGCCGTACGAGCCCGAGGCTCCGGCGCAGGCCTACGACGAGCGGGGCTACCTGCTTAA
TGGCAAGTCGTCGCCACACTTGAAACGACGCTACTCGGAATAGGATAATAGGTTTTTATATACGG
TTTGGATAGGAATAAAGGATAGGAATAAGGTTAGGAATAATGAAGAGTTGGGATGAAGAGTTGAA
TGTGGAGTAGTTTGGTTTATTGGTTCTACGTGAGGAGCCAGTAGGGGAGGCCTAAACACCAGTGG
ACGAGTTTCAGGTCGACATCACTTTAATTAGTTTCAGGCTATTAA
Right flanking sequence: Indices 51513 -- 52012
TGTTGTGACACCATCTTGATTAACTGTGGCACCAGTTAATTAGTTTCAGGTTGTGACATTAGTTC
TAGGTTGTGACACTAGCTCAGCCGGTGACACCAATTCACATGTTTCATTGTCTCTAACGTTTCAC
CCCTGCTACAGTTTGTACAACTACCTCACCGTAGCTGTGTGTGCCCTTGGCTGTTTGTGCCCGTG
GCTTTGCGCTCGTTTCACGAAGCTTCTCGGTGCTTTGTGCCACCAGATTACGACTACCCTTCGCT
ACCGCAAATGAGCGCAAAGGGGCCAAAACGCAACCACCTTGAAAAAGAAAAGGCGAGCTCAAAAC
AGCAATTGCGGTCGGCCAAGACCGTGGGTGTGGGGAACCCCCGTGGGTGTCTGGCGGGGTGTGGT
GGTCTTCTAAGCCCCCATCGATGGCCCGCTGACGCAGACAGGCGCGTGTGCCCGACACAGCGTAC
CTGGGTACGAGCTGGAGACGACAGAAACAGCGTGGAACCGGTACC
Found at i:51575 original size:19 final size:19
Alignment explanation
Indices: 51551--51589 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
51541 GCACCAGTTA
51551 ATTAGTT-TCAGGTTGTGAC
1 ATTAGTTCT-AGGTTGTGAC
51570 ATTAGTTCTAGGTTGTGAC
1 ATTAGTTCTAGGTTGTGAC
51589 A
1 A
51590 CTAGCTCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.41
Consensus pattern (19 bp):
ATTAGTTCTAGGTTGTGAC
Left flanking sequence: Indices 51051 -- 51550
TGGGCGGCGACAATTTGCATTACTTTAGACAGGAGGACTACGACGACATGGACGACGACGACGAT
GACGACGACGACTACGATGAGCCCGAGCCGTACGAGCCCGAGGCTCCGGCGCAGGCCTACGACGA
GCGGGGCTACCTGCTTAATGGCAAGTCGTCGCCACACTTGAAACGACGCTACTCGGAATAGGATA
ATAGGTTTTTATATACGGTTTGGATAGGAATAAAGGATAGGAATAAGGTTAGGAATAATGAAGAG
TTGGGATGAAGAGTTGAATGTGGAGTAGTTTGGTTTATTGGTTCTACGTGAGGAGCCAGTAGGGG
AGGCCTAAACACCAGTGGACGAGTTTCAGGTCGACATCACTTTAATTAGTTTCAGGCTATTAACA
CACCAGTTTGATTAGTTTCAGTACCACACCGCTTTGAATCATTTCAGTACCACACCGCTTTGAAT
CATTTCATGTTGTGACACCATCTTGATTAACTGTGGCACCAGTTA
Right flanking sequence: Indices 51590 -- 52089
CTAGCTCAGCCGGTGACACCAATTCACATGTTTCATTGTCTCTAACGTTTCACCCCTGCTACAGT
TTGTACAACTACCTCACCGTAGCTGTGTGTGCCCTTGGCTGTTTGTGCCCGTGGCTTTGCGCTCG
TTTCACGAAGCTTCTCGGTGCTTTGTGCCACCAGATTACGACTACCCTTCGCTACCGCAAATGAG
CGCAAAGGGGCCAAAACGCAACCACCTTGAAAAAGAAAAGGCGAGCTCAAAACAGCAATTGCGGT
CGGCCAAGACCGTGGGTGTGGGGAACCCCCGTGGGTGTCTGGCGGGGTGTGGTGGTCTTCTAAGC
CCCCATCGATGGCCCGCTGACGCAGACAGGCGCGTGTGCCCGACACAGCGTACCTGGGTACGAGC
TGGAGACGACAGAAACAGCGTGGAACCGGTACCGTAAGCGGAGGTCTAGAATTACTACAAGCAGT
AAGCGTGAGGGGTTAGGGGTAAGGTTCAGGGCTTAGCGCGAATAG
Found at i:51701 original size:16 final size:16
Alignment explanation
Indices: 51671--51710 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
51661 AACTACCTCA
*
51671 CCGTAGCTGTGTGTGC
1 CCGTGGCTGTGTGTGC
* *
51687 CCTTGGCTGTTTGTGC
1 CCGTGGCTGTGTGTGC
51703 CCGTGGCT
1 CCGTGGCT
51711 TTGCGCTCGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.03, C:0.28, G:0.35, T:0.35
Consensus pattern (16 bp):
CCGTGGCTGTGTGTGC
Left flanking sequence: Indices 51171 -- 51670
CCTACGACGAGCGGGGCTACCTGCTTAATGGCAAGTCGTCGCCACACTTGAAACGACGCTACTCG
GAATAGGATAATAGGTTTTTATATACGGTTTGGATAGGAATAAAGGATAGGAATAAGGTTAGGAA
TAATGAAGAGTTGGGATGAAGAGTTGAATGTGGAGTAGTTTGGTTTATTGGTTCTACGTGAGGAG
CCAGTAGGGGAGGCCTAAACACCAGTGGACGAGTTTCAGGTCGACATCACTTTAATTAGTTTCAG
GCTATTAACACACCAGTTTGATTAGTTTCAGTACCACACCGCTTTGAATCATTTCAGTACCACAC
CGCTTTGAATCATTTCATGTTGTGACACCATCTTGATTAACTGTGGCACCAGTTAATTAGTTTCA
GGTTGTGACATTAGTTCTAGGTTGTGACACTAGCTCAGCCGGTGACACCAATTCACATGTTTCAT
TGTCTCTAACGTTTCACCCCTGCTACAGTTTGTACAACTACCTCA
Right flanking sequence: Indices 51711 -- 52210
TTGCGCTCGTTTCACGAAGCTTCTCGGTGCTTTGTGCCACCAGATTACGACTACCCTTCGCTACC
GCAAATGAGCGCAAAGGGGCCAAAACGCAACCACCTTGAAAAAGAAAAGGCGAGCTCAAAACAGC
AATTGCGGTCGGCCAAGACCGTGGGTGTGGGGAACCCCCGTGGGTGTCTGGCGGGGTGTGGTGGT
CTTCTAAGCCCCCATCGATGGCCCGCTGACGCAGACAGGCGCGTGTGCCCGACACAGCGTACCTG
GGTACGAGCTGGAGACGACAGAAACAGCGTGGAACCGGTACCGTAAGCGGAGGTCTAGAATTACT
ACAAGCAGTAAGCGTGAGGGGTTAGGGGTAAGGTTCAGGGCTTAGCGCGAATAGGCAGTTACCGG
ATCGGGAAGCGCGGTCGAGAAGTGGGGAAGGACATGATAACTTGAAGGAGTTAGGGAAGATAGGG
GTGTTTGGGGTTTGGGGCCTTGGAGGTTGGTCGACTGGTACTGAT
Found at i:52460 original size:15 final size:15
Alignment explanation
Indices: 52428--52480 Score: 70
Period size: 15 Copynumber: 3.4 Consensus size: 15
52418 CGAATCAAAC
*
52428 CCACACAACCACACCAA
1 CCACAC-ACCA-AACAA
52445 CCACACACCAAACAA
1 CCACACACCAAACAA
*
52460 CCATACACCAAACAA
1 CCACACACCAAACAA
52475 CCACAC
1 CCACAC
52481 CACACAACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
15 23 0.70
16 4 0.12
17 6 0.18
ACGTcount: A:0.49, C:0.49, G:0.00, T:0.02
Consensus pattern (15 bp):
CCACACACCAAACAA
Left flanking sequence: Indices 51928 -- 52427
CCGCTGACGCAGACAGGCGCGTGTGCCCGACACAGCGTACCTGGGTACGAGCTGGAGACGACAGA
AACAGCGTGGAACCGGTACCGTAAGCGGAGGTCTAGAATTACTACAAGCAGTAAGCGTGAGGGGT
TAGGGGTAAGGTTCAGGGCTTAGCGCGAATAGGCAGTTACCGGATCGGGAAGCGCGGTCGAGAAG
TGGGGAAGGACATGATAACTTGAAGGAGTTAGGGAAGATAGGGGTGTTTGGGGTTTGGGGCCTTG
GAGGTTGGTCGACTGGTACTGATTGGGTAGTCACTCCGACAAATTGTGTCAAGCGGACACAATGA
CATTGTGGTGGTGACACAATTGTGACATTGATGCACCAGTGACACGACTGGAGAGTGGTTAGCGG
TGGTGGGTCGTAGACAAGCCAAGCAAGGAGGTGATTGGTCAGTGTGGAAAAAGAATTGTAGAAAT
CAATGGTGCCAATCGTCTAACTAATCATGGATAGGCGAATCAAAC
Right flanking sequence: Indices 52481 -- 52980
CACACAACCAACCCACATAACCTCTAAACCCACGCGACTGTTTCATCGCATTCCACCCCTAAGCC
CACAAACTCAACCAATGACCCACTAATCCCACCAGTCCACATCTCCACCCAAAATTTACATCCAT
ACCCACACCTTAACCACACTTCTCCCCACTCCTACCACTTAATGCAAACGTTTATAACAAAAACA
AAACAAAAGGAACTAAAATACATCATAACGGTCGTCTACTGGGGCTTTATAAGCTCAAACGAGCA
GTATAGGCTCTTGTCCACCAGCATCACCGCACCAAAGTTTTTGAACTCGCCACAGTAGTTGGGCG
CCGAAAACACCGTCACAAGCTTGCGCTTGTTGAAAAACTCGTACCCGTCCTCCACCACCATGTGC
CCGCGCACAATCAAGTCCATCTTGAACGTCAGACAGAAGTGGTCGACGTGGCGCTTGCCAAAGCA
GTACAGGACCCCGCGGTCGTTCTTGGGCCAGTTGGTGGACAGATA
Found at i:52496 original size:13 final size:14
Alignment explanation
Indices: 52435--52502 Score: 68
Period size: 13 Copynumber: 4.8 Consensus size: 14
52425 AACCCACACA
52435 ACCACACCAACCACAC
1 ACCACA-CAACCA-AC
*
52451 ACCAAACAACCATAC
1 ACCACACAACCA-AC
*
52466 ACCAAACAACC-AC
1 ACCACACAACCAAC
52479 ACCACACAACCAAC
1 ACCACACAACCAAC
*
52493 -CCACATAACC
1 ACCACACAACC
52503 TCTAAACCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
13 21 0.45
14 2 0.04
15 19 0.40
16 5 0.11
ACGTcount: A:0.49, C:0.49, G:0.00, T:0.03
Consensus pattern (14 bp):
ACCACACAACCAAC
Left flanking sequence: Indices 51935 -- 52434
CGCAGACAGGCGCGTGTGCCCGACACAGCGTACCTGGGTACGAGCTGGAGACGACAGAAACAGCG
TGGAACCGGTACCGTAAGCGGAGGTCTAGAATTACTACAAGCAGTAAGCGTGAGGGGTTAGGGGT
AAGGTTCAGGGCTTAGCGCGAATAGGCAGTTACCGGATCGGGAAGCGCGGTCGAGAAGTGGGGAA
GGACATGATAACTTGAAGGAGTTAGGGAAGATAGGGGTGTTTGGGGTTTGGGGCCTTGGAGGTTG
GTCGACTGGTACTGATTGGGTAGTCACTCCGACAAATTGTGTCAAGCGGACACAATGACATTGTG
GTGGTGACACAATTGTGACATTGATGCACCAGTGACACGACTGGAGAGTGGTTAGCGGTGGTGGG
TCGTAGACAAGCCAAGCAAGGAGGTGATTGGTCAGTGTGGAAAAAGAATTGTAGAAATCAATGGT
GCCAATCGTCTAACTAATCATGGATAGGCGAATCAAACCCACACA
Right flanking sequence: Indices 52503 -- 53002
TCTAAACCCACGCGACTGTTTCATCGCATTCCACCCCTAAGCCCACAAACTCAACCAATGACCCA
CTAATCCCACCAGTCCACATCTCCACCCAAAATTTACATCCATACCCACACCTTAACCACACTTC
TCCCCACTCCTACCACTTAATGCAAACGTTTATAACAAAAACAAAACAAAAGGAACTAAAATACA
TCATAACGGTCGTCTACTGGGGCTTTATAAGCTCAAACGAGCAGTATAGGCTCTTGTCCACCAGC
ATCACCGCACCAAAGTTTTTGAACTCGCCACAGTAGTTGGGCGCCGAAAACACCGTCACAAGCTT
GCGCTTGTTGAAAAACTCGTACCCGTCCTCCACCACCATGTGCCCGCGCACAATCAAGTCCATCT
TGAACGTCAGACAGAAGTGGTCGACGTGGCGCTTGCCAAAGCAGTACAGGACCCCGCGGTCGTTC
TTGGGCCAGTTGGTGGACAGATAGTGCTTGATCAGCGGGTCGGGG
Found at i:54834 original size:14 final size:15
Alignment explanation
Indices: 54815--54850 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
54805 GACACAAAGC
54815 GGTTTGTACGA-GAG
1 GGTTTGTACGACGAG
*
54829 GGTTTGTACGACGGG
1 GGTTTGTACGACGAG
54844 GGTTTGT
1 GGTTTGT
54851 GGCTACGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.14, C:0.08, G:0.44, T:0.33
Consensus pattern (15 bp):
GGTTTGTACGACGAG
Left flanking sequence: Indices 54315 -- 54814
TTTGCCGATGATAAAAATGATGTTGCGACCCGTGCACGTGACCGGGAGATAGGGGAGAGGGCGGT
GTTTACGAGCGAGCGGGCCGGCGGTGGCTACGGGAGAGGAGGCGGTTCTACGACGTTGGTGCCAC
CGGGAGACGTGTTGCGGCGTGTCCCGCATGCTTGCTCGACCCTTTAGTTAACTGGTCGCGTGGCA
TGCCAATTTGTCATCCCCAACCGGTCCCCACGTTGTCTGCACGTGCCCGCCTCGCAACGGGCCTG
CGATAGGCCACGGAGGTGGCGATGGGCCCACCGGGCGCCACACGGCTGACCGGGGCTCGGACATG
GTCCCGGGCGCTAGCGGGACGCGCGGGGTCCTGGGAGCCCGTGGCCGTGGCGGGGTGGGTGTGTC
CGGACGGCCACCGGATCCGTGCCGGCCCGCGATGGCTCGCTGGAATAGGTAGTAGTTAGCGCAGA
TCGGAGATATGATTGGGCTGAGCAAGTGTGGTGGCGACACAAAGC
Right flanking sequence: Indices 54851 -- 55350
GGCTACGTGTTGGCGACGTGGCCAACGGCGGGGTAGGCTTGGCCGTCAGGGGCTGCCAGCCAACG
GCTGCAACAATACCCCACAGGTTTGTGCCCTGCCCAGACCGATTGAGAAAACGGTGGCACGAGTA
AACAAAGCGTGGTGTTATGGTGTCAAAACGGTGACACAAAGAGAGGGTTGCTACGGTTGACAGCT
GGACGGTTGACAGCTGGACGGTTGACAGCTGGGTGAGATGGAGAAAACGTCGGGCTGGCCCCTTA
TCGCATAGGGGTTTCTTGGCATGCAGCAGAACCACCTTCTCAAACCCCGCCTGAAGCAACCACGC
CATCGTAGCGAGGAAAAGAAAGAAGACGACGGAAAAAAGAAGGAAAGAAAGGTCTAGATTCTGGA
TGGCGAGTCATGAGGCGGCGAGATTGGCGGTGTAGGCACGTCACGGTGAAAACCGTCACGGTAAA
AGACCGTCACGGTGAAAGACCGTCATGAATAATTGACCATCCGGT
Found at i:55053 original size:15 final size:15
Alignment explanation
Indices: 55033--55077 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
55023 GAGGGTTGCT
55033 ACGGTTGACAGCTGG
1 ACGGTTGACAGCTGG
55048 ACGGTTGACAGCTGG
1 ACGGTTGACAGCTGG
55063 ACGGTTGACAGCTGG
1 ACGGTTGACAGCTGG
55078 GTGAGATGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (15 bp):
ACGGTTGACAGCTGG
Left flanking sequence: Indices 54533 -- 55032
GTCCCCACGTTGTCTGCACGTGCCCGCCTCGCAACGGGCCTGCGATAGGCCACGGAGGTGGCGAT
GGGCCCACCGGGCGCCACACGGCTGACCGGGGCTCGGACATGGTCCCGGGCGCTAGCGGGACGCG
CGGGGTCCTGGGAGCCCGTGGCCGTGGCGGGGTGGGTGTGTCCGGACGGCCACCGGATCCGTGCC
GGCCCGCGATGGCTCGCTGGAATAGGTAGTAGTTAGCGCAGATCGGAGATATGATTGGGCTGAGC
AAGTGTGGTGGCGACACAAAGCGGTTTGTACGAGAGGGTTTGTACGACGGGGGTTTGTGGCTACG
TGTTGGCGACGTGGCCAACGGCGGGGTAGGCTTGGCCGTCAGGGGCTGCCAGCCAACGGCTGCAA
CAATACCCCACAGGTTTGTGCCCTGCCCAGACCGATTGAGAAAACGGTGGCACGAGTAAACAAAG
CGTGGTGTTATGGTGTCAAAACGGTGACACAAAGAGAGGGTTGCT
Right flanking sequence: Indices 55078 -- 55577
GTGAGATGGAGAAAACGTCGGGCTGGCCCCTTATCGCATAGGGGTTTCTTGGCATGCAGCAGAAC
CACCTTCTCAAACCCCGCCTGAAGCAACCACGCCATCGTAGCGAGGAAAAGAAAGAAGACGACGG
AAAAAAGAAGGAAAGAAAGGTCTAGATTCTGGATGGCGAGTCATGAGGCGGCGAGATTGGCGGTG
TAGGCACGTCACGGTGAAAACCGTCACGGTAAAAGACCGTCACGGTGAAAGACCGTCATGAATAA
TTGACCATCCGGTGACAAGACACCGTCACGTAAACTCTCACAGCACAACATTACAACGGTGACTG
CCAGTTACCTGCCAATTACCAGATACCGCCACTTACCTGCCACGTACCAGATACCGCCAATCTCA
GCCTGTTTCTGTTTCTACCGTTGTGCCCTGAATCGCTCTTAATCTCGAGATCTCATCTACCATCG
TACCTATCGTAGATCTTAGTCACTGTACCATCGCATCACCATATT
Found at i:55313 original size:16 final size:16
Alignment explanation
Indices: 55279--55330 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
55269 GGTGTAGGCA
55279 CGTCACGGTGAAA-AC
1 CGTCACGGTGAAAGAC
*
55294 CGTCACGGTAAAAGAC
1 CGTCACGGTGAAAGAC
55310 CGTCACGGTGAAAGAC
1 CGTCACGGTGAAAGAC
55326 CGTCA
1 CGTCA
55331 TGAATAATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
15 12 0.35
16 22 0.65
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.13
Consensus pattern (16 bp):
CGTCACGGTGAAAGAC
Left flanking sequence: Indices 54779 -- 55278
TGATTGGGCTGAGCAAGTGTGGTGGCGACACAAAGCGGTTTGTACGAGAGGGTTTGTACGACGGG
GGTTTGTGGCTACGTGTTGGCGACGTGGCCAACGGCGGGGTAGGCTTGGCCGTCAGGGGCTGCCA
GCCAACGGCTGCAACAATACCCCACAGGTTTGTGCCCTGCCCAGACCGATTGAGAAAACGGTGGC
ACGAGTAAACAAAGCGTGGTGTTATGGTGTCAAAACGGTGACACAAAGAGAGGGTTGCTACGGTT
GACAGCTGGACGGTTGACAGCTGGACGGTTGACAGCTGGGTGAGATGGAGAAAACGTCGGGCTGG
CCCCTTATCGCATAGGGGTTTCTTGGCATGCAGCAGAACCACCTTCTCAAACCCCGCCTGAAGCA
ACCACGCCATCGTAGCGAGGAAAAGAAAGAAGACGACGGAAAAAAGAAGGAAAGAAAGGTCTAGA
TTCTGGATGGCGAGTCATGAGGCGGCGAGATTGGCGGTGTAGGCA
Right flanking sequence: Indices 55331 -- 55830
TGAATAATTGACCATCCGGTGACAAGACACCGTCACGTAAACTCTCACAGCACAACATTACAACG
GTGACTGCCAGTTACCTGCCAATTACCAGATACCGCCACTTACCTGCCACGTACCAGATACCGCC
AATCTCAGCCTGTTTCTGTTTCTACCGTTGTGCCCTGAATCGCTCTTAATCTCGAGATCTCATCT
ACCATCGTACCTATCGTAGATCTTAGTCACTGTACCATCGCATCACCATATTGATTTACCATAAA
TCTCCCATCAAACAACAAAGACCACCAGACTAGCATCTACCAAACTACCACCACCACTCTACCAA
CCACTACCCCACCACCACACAAATCTACCCCACATTTCACCACCAGCGCTCACCACCTCGCTTAG
TTCGCGTGTTTCGGTGCATGCTGCACTTTTCTTCCACGCACCCATGTTGCACCGGATCCGCCTGG
CAGGGTGTCTCATCATCGGGGACGAGGTGCTCAATGGCAAGATCC
Found at i:55438 original size:28 final size:28
Alignment explanation
Indices: 55402--55461 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
55392 AACGGTGACT
* *
55402 GCCAGTTACCTGCCAATTACCAGATACC
1 GCCACTTACCTGCCAAGTACCAGATACC
*
55430 GCCACTTACCTGCCACGTACCAGATACC
1 GCCACTTACCTGCCAAGTACCAGATACC
55458 GCCA
1 GCCA
55462 ATCTCAGCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.27, C:0.40, G:0.15, T:0.18
Consensus pattern (28 bp):
GCCACTTACCTGCCAAGTACCAGATACC
Left flanking sequence: Indices 54902 -- 55401
GCTGCCAGCCAACGGCTGCAACAATACCCCACAGGTTTGTGCCCTGCCCAGACCGATTGAGAAAA
CGGTGGCACGAGTAAACAAAGCGTGGTGTTATGGTGTCAAAACGGTGACACAAAGAGAGGGTTGC
TACGGTTGACAGCTGGACGGTTGACAGCTGGACGGTTGACAGCTGGGTGAGATGGAGAAAACGTC
GGGCTGGCCCCTTATCGCATAGGGGTTTCTTGGCATGCAGCAGAACCACCTTCTCAAACCCCGCC
TGAAGCAACCACGCCATCGTAGCGAGGAAAAGAAAGAAGACGACGGAAAAAAGAAGGAAAGAAAG
GTCTAGATTCTGGATGGCGAGTCATGAGGCGGCGAGATTGGCGGTGTAGGCACGTCACGGTGAAA
ACCGTCACGGTAAAAGACCGTCACGGTGAAAGACCGTCATGAATAATTGACCATCCGGTGACAAG
ACACCGTCACGTAAACTCTCACAGCACAACATTACAACGGTGACT
Right flanking sequence: Indices 55462 -- 55961
ATCTCAGCCTGTTTCTGTTTCTACCGTTGTGCCCTGAATCGCTCTTAATCTCGAGATCTCATCTA
CCATCGTACCTATCGTAGATCTTAGTCACTGTACCATCGCATCACCATATTGATTTACCATAAAT
CTCCCATCAAACAACAAAGACCACCAGACTAGCATCTACCAAACTACCACCACCACTCTACCAAC
CACTACCCCACCACCACACAAATCTACCCCACATTTCACCACCAGCGCTCACCACCTCGCTTAGT
TCGCGTGTTTCGGTGCATGCTGCACTTTTCTTCCACGCACCCATGTTGCACCGGATCCGCCTGGC
AGGGTGTCTCATCATCGGGGACGAGGTGCTCAATGGCAAGATCCACGACACCAACTCGTTTGAGT
TTGCCAAGATCTGCTTCAACCAGTTGAGCGTGCCCGTGAAGCGGGTGGTGGTGTGCTCGGACGAC
AAAACCGACATCCAGCGGTCGTTGCAGCAGTTGCAGGACGACGGC
Found at i:57990 original size:15 final size:15
Alignment explanation
Indices: 57958--57987 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
57948 CCACACCCAA
57958 CTCCTTGGACCGCGC
1 CTCCTTGGACCGCGC
57973 CTCCTTGG-CCGCGC
1 CTCCTTGGACCGCGC
57987 C
1 C
57988 CTCGAGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.03, C:0.50, G:0.27, T:0.20
Consensus pattern (15 bp):
CTCCTTGGACCGCGC
Left flanking sequence: Indices 57458 -- 57957
TATCTACATTACAACTTCTCGGCAAGCATCTTCGAGATCGCCTCCACCGCAGCGTCAATCCCCGC
GGCGTTGTCACCCATCCCCTGGACAGTGTTGCCCTTGCCACCAGCCTTGCCGCCAATGTGCTCCG
AGGCAGCCTTGCCCAACGCAGTGGCATCGGCCCCCTTGGCAATGGCAGCGTCCGAAATGTAGCAC
CCGTGCGCCACCTTGTCGTCACCAGTCAAGAGGTACACCAGCCGGTCGGCAGCCTTCTTCTTGAC
CGCAGTGAACGCCTCGGTGAGCGCCTTGGCGTTGGCGCTGATGGGCACGTGCGCCACAAGGTACG
GCTTGGCGTCCTTGTCCGCGAGCCACTCGTTGACCACCTCCAACACCTTGCCCAGCTCCACCTTC
TGGCGCGCCTTCTGCTCGTCGCGGATCAGCTTGTCGAGCGCGGTGTGCGCGGCGTTGAGCTTCTG
CTTGGCCAACACCGACACGGTGAGCTTCTTGAGCGCCACACCCAA
Right flanking sequence: Indices 57988 -- 58487
CTCGAGCTTGGTGGCCGCAGCGATCTCCGCCTCGAACTCGGCGGCCTTGGCCTGCACCGCGCGGG
CGTCGTGGCCGGTGACCGCGACGATACGCCGGATGCCCTTGGCAATACCGGACTCCTCGATCACC
ACCAACTCCTTGATCTCACCGGTAGCCTTAACGTGGGTGCCACCGCAGAACTCAATCGACACGCC
GTGCCACTTCTCGTTCTTGGGGTCCGCCACGAGGTCCTTCACGGGCACGCCCACGGACACCACCC
GCACGGGGTCGGGATACGACTCGCCAAACACAGCACGCAACCCGTTGATCTCCTGGGCAGTGGCC
AACGGCACGTCCTCGGCGAACACCTCGCGGTTGTCCTTGATGTACTGGTTGGACACGTCCTCCAC
CTTCTCCAACTGCGCAGGCGTCAACGCGGCCTTGTTGGAGAAGTCAAACCGCAACTTCTCGGGCG
CCACGAGCGAGCCCTTCTGGTCCACGCCGTCGCCAAGCACCTCGC
Found at i:60539 original size:13 final size:13
Alignment explanation
Indices: 60518--60579 Score: 106
Period size: 13 Copynumber: 4.8 Consensus size: 13
60508 GTGAGACGTC
*
60518 GAGATGGGTGATG
1 GAGATGGGTGATA
*
60531 GATATGGGTGATA
1 GAGATGGGTGATA
60544 GAGATGGGTGATA
1 GAGATGGGTGATA
60557 GAGATGGGTGATA
1 GAGATGGGTGATA
60570 GAGATGGGTG
1 GAGATGGGTG
60580 GCGTAGTGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.27, C:0.00, G:0.48, T:0.24
Consensus pattern (13 bp):
GAGATGGGTGATA
Left flanking sequence: Indices 60018 -- 60517
TGTGGTGGTAGGAGTCACGCCCGACGTCCTCGAGGTCGTTGTGCTTGCCGCCGGCACGGATGCAC
TTCTGCGAGTTGGCCGCACGCTTCAACTGGGCAAAGTCCAGCGCCGGGTCCACCGTGCCCAAGAA
GATGGCCTTGTACTGGTTCATCCCCGCGTTGGCGAACAAGAGCAGCGGGTCGTTGTGGGGCACCA
CTGAGCCCAGCGGCACGTAAGTGTGGTTCTGCTTGTCGGTAAAGTACTCCAAGAACGCGGATCTC
ACCCGCTGGGCGGGCCACTCAGTGCTGGTAGACATGGTTCGGAGAAGTCTGAGCTGTCTGAGCAT
GAAAAATGTGCGAAAAAATGCGTCTGCGGATAAGGGAAGAGGTGGGGAAGAGGGAAAAGAAGGGG
ACGGGAAGGGAAGGGAGGGGTGTTGTGGCTGGTTGTAGGTGGTGGGTGGTTGGTGTTACGTAGAG
GTGGGGTGGAGAAGGTGGTGGGAGGTGACTAATAGGTGAGACGTC
Right flanking sequence: Indices 60580 -- 61079
GCGTAGTGATGAGTGACTAGAGGTGAGTCATGGGTGGCGAATGACTCAAACGCGGAGACGGGAAG
AGGAACGGAACGTGGTGGGAAAAGAACCGATCTGTGTAGAGGACTACAAACGCGGTGTCTCGGTT
AGCACACGCGAAATGGTAAACAGACGCGAGGAAAAGAAAGGGGTGGCTCGTGGGGAGACGGAACC
AGTAACCGTTGAAGTCTAGGGTTGTTTGGGTTGTGAGTTGGGTAATTTCGTAGAGTCATGGCACG
CGATAGCCGGCGTGCGTTATCTGGAACTCAAGTGCCTTTAATCGATAGCACTCGTGACTCAGCCA
ACGCTGGCACAGGGCAGCAAACTCTTGGCCCTGTTGACATCTGGATCGCCAGTTTCACGTGAACA
CTGTGGTAAGTGTAGTCTGCCTGCCCAGATTTACCACCTCGAGGCACTGGTAAAAGAAAGGATGA
AACACAAGAAAACCGTTGCGACCCTACATCTGGGTCAGAAGCCAA
Found at i:61518 original size:18 final size:18
Alignment explanation
Indices: 61495--61529 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
61485 AGGAAAACTC
*
61495 ACAGGCGTTCACGGAGGA
1 ACAGGCGGTCACGGAGGA
61513 ACAGGCGGTCACGGAGG
1 ACAGGCGGTCACGGAGG
61530 TACGGGCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.23, G:0.43, T:0.09
Consensus pattern (18 bp):
ACAGGCGGTCACGGAGGA
Left flanking sequence: Indices 60995 -- 61494
CAGATTTACCACCTCGAGGCACTGGTAAAAGAAAGGATGAAACACAAGAAAACCGTTGCGACCCT
ACATCTGGGTCAGAAGCCAAGAGGCTAAAGGCACCGTAGGTGAAATTCTTGTCGTTCTTGGCCTA
GGTGGATTTACTCAGAACGAAGGGTACGAAATGTGGTTATGGGAATAGATGAAGTTCCTCAAAAT
CGGCAGACTATTCGTTATAGTGTAACGATATCCAGGAATGTAGGTTGTGTAACTATTAAGGTTCA
CATTCCTGTAAGTATCACACGGTTTGATGGCCACCGTATTCGGTTAGCTGCAAAACCGGGTTTGT
GGGAGCCATCAACATTCCTGTAACTACCTCATGGTTAGAAGGCTACCATATTTGTTTAGATGCAA
AACCATATGAGTGCCAACAGAGACCTTTGTCGCTCGCTCTGAGATGGGTATCCCAGAAACCTGAA
TCCCTGCCCTATATCGGACAACCTGAATACGGTTTAGGAAAACTC
Right flanking sequence: Indices 61530 -- 62029
TACGGGCATTTACGAAACGGCATTCATGGAGAAACAGGCGTTCTCCACGGCGTACCGCCTGTTTA
CGTATACTACTTTTGGCCGTTCTATATACAAAGGACGCCGTACCACCATCTTTTGCAGACTTGCT
TCGCATATCTGCGCTGCAACGATGATAGCGTTCCTCATTGCCTCACCATCGGAGCATACGCAACC
TGGTCACGGTGCAACGGAGTTAGCGAGCTCGGTCGTGGCGTGAGTCTGGAACCAGCGTAGCCCAG
GAGTTTAGACGCCACCCACGAAGCAAGCAAGAGTCCGTTGTTCGGTATACACTCAACAACAATCT
GCTGTGCCTAGACTACTCGTGCTAGTTTCTGGCTTCCAAGCTCTTGGCTGTGGATTCTGGTCCTA
CGTCAGCCGTTGAGGAATTCCATCGCCCCAAATGAGATGAGGCATCGTTCCGCGTAATCTACCAT
GGCATAACCGTTAAAGTTCTAGGCTTCGGCCAACTTGCTCGGGAC
Found at i:64602 original size:6 final size:6
Alignment explanation
Indices: 64591--64713 Score: 92
Period size: 6 Copynumber: 20.0 Consensus size: 6
64581 TCTTATTGGT
* * *
64591 GTGTTG GTGTTGG AGTGTTG GTGTTG GTG-TG TTGTT- ATCGGT- GTGTTG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTTG GT-GTTG GTGTTG
64639 GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTG GTG-TG
1 GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG
* * * *
64690 TTGTTG TTGTTG TTGTTG TTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG
64714 CTGGTCGCTG
Statistics
Matches: 101, Mismatches: 6, Indels: 20
0.80 0.05 0.16
Matches are distributed among these distances:
5 11 0.11
6 69 0.68
7 6 0.06
8 15 0.15
ACGTcount: A:0.02, C:0.01, G:0.46, T:0.52
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 64091 -- 64590
GCACCCTGCAAGCCCGGCTCCGCTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAGAAAAAAA
AAGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCGAATCAAAGCTTGTCGTTAGCGTGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGTTAGTACTTCTGATGGAGTCTCCCGGCTGGGTCATTATCC
GTTGGCGCGTCGCGCCATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTGG
TGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGG
GAGACGATATCAGAAGTACTAGCAGTACCACCCCCTCTTATTGGT
Right flanking sequence: Indices 64714 -- 65213
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTA
CTCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTTGGGGTAGCCTGC
ATGAGCGGGCTACCCTGCAGCCGTACTGGGGGCTTATATTGTAGTATATAGATATATACAGGTTC
GCCATAATCAACGCTATCTACGGTATCAACAGTACAATCACGTGACAATTGTCACATGTGTTCTT
GAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTTCTACC
AATAGTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATCC
TCTAACAAAATACATTATGTAATACTGATTTAGTAAATAATAGTC
Found at i:64608 original size:14 final size:14
Alignment explanation
Indices: 64586--64713 Score: 170
Period size: 14 Copynumber: 9.2 Consensus size: 14
64576 CCCCCTCTTA
64586 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
64600 TTGGAGTGTTGGTG
1 TTGGTGTGTTGGTG
* *
64614 TTGGTGTGTTGTTA
1 TTGGTGTGTTGGTG
*
64628 TCGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
64642 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
64656 TT-G-GTGTTGGTG
1 TTGGTGTGTTGGTG
64668 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
64682 TTGGTGTGTTGTTG
1 TTGGTGTGTTGGTG
* *
64696 TTGTTGTTGTTGTTG
1 TTGGTG-TGTTGGTG
64711 TTG
1 TTG
64714 CTGGTCGCTG
Statistics
Matches: 101, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
12 11 0.11
13 2 0.02
14 77 0.76
15 11 0.11
ACGTcount: A:0.02, C:0.01, G:0.45, T:0.52
Consensus pattern (14 bp):
TTGGTGTGTTGGTG
Left flanking sequence: Indices 64086 -- 64585
CGCTTGCACCCTGCAAGCCCGGCTCCGCTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAGAA
AAAAAAAGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCGAATCAAAGCTTGTCGTTAGCGTGG
TGATACTTGCTCACCACAGCCTCGGTGCTGTTAGTACTTCTGATGGAGTCTCCCGGCTGGGTCAT
TATCCGTTGGCGCGTCGCGCCATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTT
ACTGGTGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGC
TTCTACTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATC
GCCACAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCA
TATGGGAGACGATATCAGAAGTACTAGCAGTACCACCCCCTCTTA
Right flanking sequence: Indices 64714 -- 65213
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTA
CTCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTTGGGGTAGCCTGC
ATGAGCGGGCTACCCTGCAGCCGTACTGGGGGCTTATATTGTAGTATATAGATATATACAGGTTC
GCCATAATCAACGCTATCTACGGTATCAACAGTACAATCACGTGACAATTGTCACATGTGTTCTT
GAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTTCTACC
AATAGTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATCC
TCTAACAAAATACATTATGTAATACTGATTTAGTAAATAATAGTC
Found at i:64616 original size:20 final size:20
Alignment explanation
Indices: 64591--64704 Score: 117
Period size: 20 Copynumber: 5.6 Consensus size: 20
64581 TCTTATTGGT
*
64591 GTGTTGGTGTTGGAGTGTTG
1 GTGTTGGTGTTGGTGTGTTG
*
64611 GTGTTGGTG-TGTTGT-TATCGG
1 GTGTTGGTGTTGGTGTGT-T--G
64632 TGTGTTGGTGTTGGTGTGTTG
1 -GTGTTGGTGTTGGTGTGTTG
*
64653 GTGTTGGTGTTGGTGT-TGG
1 GTGTTGGTGTTGGTGTGTTG
64672 TGTGTTGGTGTTGGTGTGTTG
1 -GTGTTGGTGTTGGTGTGTTG
* *
64693 TTGTTGTTGTTG
1 GTGTTGGTGTTG
64705 TTGTTGTTGC
Statistics
Matches: 79, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
18 1 0.01
19 7 0.09
20 51 0.65
21 4 0.05
22 9 0.11
23 6 0.08
24 1 0.01
ACGTcount: A:0.02, C:0.01, G:0.46, T:0.51
Consensus pattern (20 bp):
GTGTTGGTGTTGGTGTGTTG
Left flanking sequence: Indices 64091 -- 64590
GCACCCTGCAAGCCCGGCTCCGCTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAGAAAAAAA
AAGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCGAATCAAAGCTTGTCGTTAGCGTGGTGATA
CTTGCTCACCACAGCCTCGGTGCTGTTAGTACTTCTGATGGAGTCTCCCGGCTGGGTCATTATCC
GTTGGCGCGTCGCGCCATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTGG
TGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTA
CTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCAC
AGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGG
GAGACGATATCAGAAGTACTAGCAGTACCACCCCCTCTTATTGGT
Right flanking sequence: Indices 64705 -- 65204
TTGTTGTTGCTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTG
TCAGTGGTACTCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGT
GGTGCCATTGGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTTGGG
GTAGCCTGCATGAGCGGGCTACCCTGCAGCCGTACTGGGGGCTTATATTGTAGTATATAGATATA
TACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTACAATCACGTGACAATTGTCACA
TGTGTTCTTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAG
TCTTCTACCAATAGTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACC
GTTCTATCCTCTAACAAAATACATTATGTAATACTGATTTAGTAA
Found at i:67000 original size:10 final size:10
Alignment explanation
Indices: 66985--67011 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
66975 TGACCCTGCT
66985 AGTTCGCGGC
1 AGTTCGCGGC
66995 AGTTCGCGGC
1 AGTTCGCGGC
67005 AGTTCGC
1 AGTTCGC
67012 TTCGCTCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.30, G:0.37, T:0.22
Consensus pattern (10 bp):
AGTTCGCGGC
Left flanking sequence: Indices 66485 -- 66984
TATAGGTATTCAAACTGTATGTCTCGTAGATACACCCAGTTGCTTCGTTGGTTTCTAAACTTCAC
GGTATAGAAAACACACCCCAGCTCTCGAAAGGTGGATCAGTATCACCGCTTGAACTAGCTTTTGC
AATCGTGTACATAGTCGCCTGTTTCGATGCTTCAGGCCGCAAGATGGTCGTACAAACGACTGTGC
CTTCGCTTCTAGCCACTAAACTGATTTGTGATTGCACACGTTCACTGTGCACTAGCTACAAGGAA
CGCTATTCGTACAAATACACGCCTTCCATTGGCTTCAGGTCCCCATAATCGCTTGTTCACCCAAA
CACACGCCTTCATTGCGCTCCAAAACCATGAACTGTTTCCTCAAATACACGCGCTCCACGCCTAA
AGTAAGATCTGTTTCCTCAAATACACGCCTTCGCTGCGCTTCAGGCCTTAGGTAAAGCTTGGCTG
TACCAATACACGCCTTCCGCTGCGCTCCAGGCCACTGACCCTGCT
Right flanking sequence: Indices 67012 -- 67511
TTCGCTCACCGCCGCTCCTCACTCTCTAGTGTACATTAAACAATACAAACATAATAAAACAATTC
ATCAAGAAGCTACAATACAAGGCATTATCTGCGGCCATAGCGCATGCCGTGGGCGTGGTCGTGCG
CCTGGACGCTCGGATCCACATTAGGGTCAATATTAGGGTCCACGGGCCCCAAGTGCGCCGGGCCC
GTCGCCTCCATCGCCGCGGCAATCATCGCCTCGGGCACCTGCTGGCCGTCGTCGTGGTGCAAGTG
CATCTGGTGGTGCATCGCCAGGTTCTGGGCAATGTTGTGCAACGCCTCGGGCATGTACCCGTTGG
TGGGCGCCTGCGAGGTGCGGTGCATCGGCTTCTGCACAAGCGTGCGGTTCTTGGACCGCTTCTTC
TTGCCGGTTATCGGCTCGGGCGCGTGGTTGTGCAACGGGTTGATCATCCGCAAAATCCACATCTC
CAGCCCCCCGAGCTGGTCCCCGAGGTACCCGTCGGCCAACTTCTG
Found at i:67936 original size:18 final size:18
Alignment explanation
Indices: 67915--67953 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
67905 GTGGGGCTGC
* *
67915 TGCTGGTGCATCTGGGGG
1 TGCTGCTGCAACTGGGGG
*
67933 TGCTGCTGCAACTGGTGG
1 TGCTGCTGCAACTGGGGG
67951 TGC
1 TGC
67954 ATCATCAGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.21, G:0.44, T:0.28
Consensus pattern (18 bp):
TGCTGCTGCAACTGGGGG
Left flanking sequence: Indices 67415 -- 67914
GCTCGGGCGCGTGGTTGTGCAACGGGTTGATCATCCGCAAAATCCACATCTCCAGCCCCCCGAGC
TGGTCCCCGAGGTACCCGTCGGCCAACTTCTGGTCCAAGTTGCGGTCCATGGGGTCGGGCAGGTC
CTTCTTGATCTTCTTCTTGTCCTTCTCCGGCGGGTACAAGTTGGCCACCAACCGGTAGCCACACT
TCAGCCGCTTGGTGTAGGCAACGCGCTGCCGCTTCAGCGGGTCCTTGACGGTGGTGCGGAAGGTG
CCCAGCCGCTCGCACTGGAAGTACACCGCCTTGGGCTTCAGCGAGTTGATGACAATCTTGCACCG
CTCGTCCACCAGCAACGTGCGCTTGACGTAGTCGATCAAGTCGGGCTTGTTGGTGAACGTCTTGA
TGATCTCGTTTTCAATGTACCGCGACTGCAAAATGCCCCCGTCAAACTCGTCCGCCCCCACCTGC
AGGTGGTGCACCATCAGATGCGGCATCTGGTGGTGGTGGGGCTGC
Right flanking sequence: Indices 67954 -- 68453
ATCATCAGCTGCTGGTGGTGCTGCTGCTGGTGGTGCTGCTGGAACTGCAACTGCGACTGGAGCTC
CTGCTGCTGCAATTGCTGCTGGTACCGCTGGCGCTCGGCCCGGTGTTGCAACTCGGTGGCAGCTG
CGGCGGCGGCCGCGGTGTAGCCCCCCTGGTGGTGGAACTGGTTGGCGTCGTCCGGCGGCGCGCCG
TAGGAGACCGCGGCCGCGGCCGTGGCGGTGGCAGACTCGTAGTCGGGCCGCGGCTGCCCGCCGTC
CACGTGGAGATGGTCGTCGTTGGCTCGCTCGTTCAGGGTCAGCATAAATGCAGGTTCCTGTATAG
CTAAGGGTGGTGTATATGGTTTATCGTGGCAATGTTTTTTTTATTTGAGGTGGAGTCGTGTCGCG
GCGAAAAGTTTCCCTGTTCTCATTGGGCAGCATGGTTGCTGGCCCTGGGGGCGGAAAGGTGGGTT
GGTTCGCGGGGGGTTTTGGGGCGCGTGGCGGCGACGGTGTTGGCG
Found at i:67978 original size:12 final size:12
Alignment explanation
Indices: 67961--67995 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
67951 TGCATCATCA
*
67961 GCTGCTGGTGGT
1 GCTGCTGCTGGT
67973 GCTGCTGCTGGT
1 GCTGCTGCTGGT
*
67985 GGTGCTGCTGG
1 GCTGCTGCTGG
67996 AACTGCAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.20, G:0.49, T:0.31
Consensus pattern (12 bp):
GCTGCTGCTGGT
Left flanking sequence: Indices 67461 -- 67960
CATCTCCAGCCCCCCGAGCTGGTCCCCGAGGTACCCGTCGGCCAACTTCTGGTCCAAGTTGCGGT
CCATGGGGTCGGGCAGGTCCTTCTTGATCTTCTTCTTGTCCTTCTCCGGCGGGTACAAGTTGGCC
ACCAACCGGTAGCCACACTTCAGCCGCTTGGTGTAGGCAACGCGCTGCCGCTTCAGCGGGTCCTT
GACGGTGGTGCGGAAGGTGCCCAGCCGCTCGCACTGGAAGTACACCGCCTTGGGCTTCAGCGAGT
TGATGACAATCTTGCACCGCTCGTCCACCAGCAACGTGCGCTTGACGTAGTCGATCAAGTCGGGC
TTGTTGGTGAACGTCTTGATGATCTCGTTTTCAATGTACCGCGACTGCAAAATGCCCCCGTCAAA
CTCGTCCGCCCCCACCTGCAGGTGGTGCACCATCAGATGCGGCATCTGGTGGTGGTGGGGCTGCT
GCTGGTGCATCTGGGGGTGCTGCTGCAACTGGTGGTGCATCATCA
Right flanking sequence: Indices 67996 -- 68495
AACTGCAACTGCGACTGGAGCTCCTGCTGCTGCAATTGCTGCTGGTACCGCTGGCGCTCGGCCCG
GTGTTGCAACTCGGTGGCAGCTGCGGCGGCGGCCGCGGTGTAGCCCCCCTGGTGGTGGAACTGGT
TGGCGTCGTCCGGCGGCGCGCCGTAGGAGACCGCGGCCGCGGCCGTGGCGGTGGCAGACTCGTAG
TCGGGCCGCGGCTGCCCGCCGTCCACGTGGAGATGGTCGTCGTTGGCTCGCTCGTTCAGGGTCAG
CATAAATGCAGGTTCCTGTATAGCTAAGGGTGGTGTATATGGTTTATCGTGGCAATGTTTTTTTT
ATTTGAGGTGGAGTCGTGTCGCGGCGAAAAGTTTCCCTGTTCTCATTGGGCAGCATGGTTGCTGG
CCCTGGGGGCGGAAAGGTGGGTTGGTTCGCGGGGGGTTTTGGGGCGCGTGGCGGCGACGGTGTTG
GCGGGCTGGGTTAGTGTGCCCGACTGCCGCGGTCCTGTGGGCTAT
Found at i:67981 original size:15 final size:15
Alignment explanation
Indices: 67961--67994 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
67951 TGCATCATCA
67961 GCTGCTGGTGGTGCT
1 GCTGCTGGTGGTGCT
67976 GCTGCTGGTGGTGCT
1 GCTGCTGGTGGTGCT
67991 GCTG
1 GCTG
67995 GAACTGCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.21, G:0.47, T:0.32
Consensus pattern (15 bp):
GCTGCTGGTGGTGCT
Left flanking sequence: Indices 67461 -- 67960
CATCTCCAGCCCCCCGAGCTGGTCCCCGAGGTACCCGTCGGCCAACTTCTGGTCCAAGTTGCGGT
CCATGGGGTCGGGCAGGTCCTTCTTGATCTTCTTCTTGTCCTTCTCCGGCGGGTACAAGTTGGCC
ACCAACCGGTAGCCACACTTCAGCCGCTTGGTGTAGGCAACGCGCTGCCGCTTCAGCGGGTCCTT
GACGGTGGTGCGGAAGGTGCCCAGCCGCTCGCACTGGAAGTACACCGCCTTGGGCTTCAGCGAGT
TGATGACAATCTTGCACCGCTCGTCCACCAGCAACGTGCGCTTGACGTAGTCGATCAAGTCGGGC
TTGTTGGTGAACGTCTTGATGATCTCGTTTTCAATGTACCGCGACTGCAAAATGCCCCCGTCAAA
CTCGTCCGCCCCCACCTGCAGGTGGTGCACCATCAGATGCGGCATCTGGTGGTGGTGGGGCTGCT
GCTGGTGCATCTGGGGGTGCTGCTGCAACTGGTGGTGCATCATCA
Right flanking sequence: Indices 67995 -- 68494
GAACTGCAACTGCGACTGGAGCTCCTGCTGCTGCAATTGCTGCTGGTACCGCTGGCGCTCGGCCC
GGTGTTGCAACTCGGTGGCAGCTGCGGCGGCGGCCGCGGTGTAGCCCCCCTGGTGGTGGAACTGG
TTGGCGTCGTCCGGCGGCGCGCCGTAGGAGACCGCGGCCGCGGCCGTGGCGGTGGCAGACTCGTA
GTCGGGCCGCGGCTGCCCGCCGTCCACGTGGAGATGGTCGTCGTTGGCTCGCTCGTTCAGGGTCA
GCATAAATGCAGGTTCCTGTATAGCTAAGGGTGGTGTATATGGTTTATCGTGGCAATGTTTTTTT
TATTTGAGGTGGAGTCGTGTCGCGGCGAAAAGTTTCCCTGTTCTCATTGGGCAGCATGGTTGCTG
GCCCTGGGGGCGGAAAGGTGGGTTGGTTCGCGGGGGGTTTTGGGGCGCGTGGCGGCGACGGTGTT
GGCGGGCTGGGTTAGTGTGCCCGACTGCCGCGGTCCTGTGGGCTA
Found at i:69188 original size:10 final size:10
Alignment explanation
Indices: 69167--69211 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
69157 AACCACTTCT
*
69167 ACTCACCATC
1 ACTCAACATC
*
69177 ACTCAACTTC
1 ACTCAACATC
69187 ACTCAACATC
1 ACTCAACATC
69197 ACTCAACCATC
1 ACTCAA-CATC
69208 ACTC
1 ACTC
69212 CACTATCGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
10 23 0.74
11 8 0.26
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.22
Consensus pattern (10 bp):
ACTCAACATC
Left flanking sequence: Indices 68667 -- 69166
AGCGTTTTCTGGGTGCGTAGGGGCGGTGTAGCGGTGGTAGTGGGGGAAGTGGCGCCCCTTGCGGT
GGAGCGGAGGACGGATGTGAAAGGTGGGAAAAACGGGCTAGGGGCGTAGGAGAGGGTGTAGGAGA
CGAAAGAAAAGGGATGGGGTGGTGGAAGGGGGTGTGTGGTGGTGTGGTGAGGGGTAGAGCGGTGA
GAAGGTGGCTACAATGTCGTCTGGAGGTACGAGATCCATCGTGGAATTCGAGATCTAGACGACGG
CCAAATCGTACAGATTTGGAAGAAAAAAGAAAATTTGGGAAAAAGGGGGAACGAGGAATAGACGA
GAGAAATGGTGTTTACGGGCGTGTAAGAGAGTGGTTGGAGTTAGCACTATGACCCAATAACACAG
GCCATTAGCAACATAGTCTAAAACCACGCAACTAGAGCCTAAAAAGCCTAAACAACCTTATTCAG
CGTCTTACTCCTGTCTTAGACAATTACCATCCACTAACCACTTCT
Right flanking sequence: Indices 69212 -- 69711
CACTATCGCCCCACCATCCAAGTCCCACTCACCTTGTTCTCTCACCTTCCACCTCTCACCACCCC
TATTCCTTTACCCCTCTCCGTTCACCTTTTCTCACGCCATCTTAGTGCGGCGGATCGTCATGGAC
ACCCTAGTCGCCAGCATCCAGACCGACCACGAGCACCGCGAGTTCGACTGGCTCGCGCGCGAAGT
GGTTGCCCCCGAGTTTGCCCAGATCATCGAGACCCTCCAGCTCTGCCTGGACCTCCTCTTGTACA
ACTCCCCCGAGCACCCGGACGAGGCCCAGCACATCGAGCGCGGGCCGCCGATAAAGCTCCCGGTG
CTGCTGAGCAAGCTGGAAACCCTCAAGGGCGTGGTCACCCGCGACGGTGCCTACGTCACCGACCT
CCACTTGAGCGTGCGCGAGCCCCAGTTCAACCGGGTGCTCAACAAGTTGACCCTCCTGCAACCGT
TGTTGCTCGAGCAGATCATCACCGCCAAGCGGTCCATTGACGCTG
Found at i:69196 original size:20 final size:21
Alignment explanation
Indices: 69161--69203 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
69151 TCCACTAACC
*
69161 ACTTCTACTCACCATCACTCA
1 ACTTCTACTCAACATCACTCA
69182 ACTTC-ACTCAACATCACTCA
1 ACTTCTACTCAACATCACTCA
69202 AC
1 AC
69204 CATCACTCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.26
Consensus pattern (21 bp):
ACTTCTACTCAACATCACTCA
Left flanking sequence: Indices 68661 -- 69160
TGCTGTAGCGTTTTCTGGGTGCGTAGGGGCGGTGTAGCGGTGGTAGTGGGGGAAGTGGCGCCCCT
TGCGGTGGAGCGGAGGACGGATGTGAAAGGTGGGAAAAACGGGCTAGGGGCGTAGGAGAGGGTGT
AGGAGACGAAAGAAAAGGGATGGGGTGGTGGAAGGGGGTGTGTGGTGGTGTGGTGAGGGGTAGAG
CGGTGAGAAGGTGGCTACAATGTCGTCTGGAGGTACGAGATCCATCGTGGAATTCGAGATCTAGA
CGACGGCCAAATCGTACAGATTTGGAAGAAAAAAGAAAATTTGGGAAAAAGGGGGAACGAGGAAT
AGACGAGAGAAATGGTGTTTACGGGCGTGTAAGAGAGTGGTTGGAGTTAGCACTATGACCCAATA
ACACAGGCCATTAGCAACATAGTCTAAAACCACGCAACTAGAGCCTAAAAAGCCTAAACAACCTT
ATTCAGCGTCTTACTCCTGTCTTAGACAATTACCATCCACTAACC
Right flanking sequence: Indices 69204 -- 69703
CATCACTCCACTATCGCCCCACCATCCAAGTCCCACTCACCTTGTTCTCTCACCTTCCACCTCTC
ACCACCCCTATTCCTTTACCCCTCTCCGTTCACCTTTTCTCACGCCATCTTAGTGCGGCGGATCG
TCATGGACACCCTAGTCGCCAGCATCCAGACCGACCACGAGCACCGCGAGTTCGACTGGCTCGCG
CGCGAAGTGGTTGCCCCCGAGTTTGCCCAGATCATCGAGACCCTCCAGCTCTGCCTGGACCTCCT
CTTGTACAACTCCCCCGAGCACCCGGACGAGGCCCAGCACATCGAGCGCGGGCCGCCGATAAAGC
TCCCGGTGCTGCTGAGCAAGCTGGAAACCCTCAAGGGCGTGGTCACCCGCGACGGTGCCTACGTC
ACCGACCTCCACTTGAGCGTGCGCGAGCCCCAGTTCAACCGGGTGCTCAACAAGTTGACCCTCCT
GCAACCGTTGTTGCTCGAGCAGATCATCACCGCCAAGCGGTCCAT
Found at i:70442 original size:17 final size:18
Alignment explanation
Indices: 70422--70455 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
70412 GCACTGGAAT
70422 TACGAG-GCCAGTGGAGG
1 TACGAGCGCCAGTGGAGG
70439 TACGAGCGCCAGTGGAG
1 TACGAGCGCCAGTGGAG
70456 TTGCCAGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.24, C:0.21, G:0.44, T:0.12
Consensus pattern (18 bp):
TACGAGCGCCAGTGGAGG
Left flanking sequence: Indices 69922 -- 70421
CTGTGGACCTCTACATCAACCAGGCCGAGGTGTGTCTCGACTTGAAAAAGCTCCACTTGGTCACG
GAGCTGCCGTGGGGGGACATCGACCCCGAGCTGGGCACGCTGTACATCGACATCGTCAAGAACGA
GATCCAGCAGGGCAAGCCGCTCGACCGCGACTACATCGAGAAGCGGCTCCACGAGTTGGCGCGCT
CGCACCACGAGCTGGGGTTCTTCTCCAACGTGCTCAACATGATGAAGCCGAAATACGACCCCATC
GACTACGTGACCAAGTGTGTGACCTACAACGGCGGCGTGGTGATGATCATGAAGATGATCGAGGT
GGCGCTGCCGGACCCGGTGCTCGTGCTGGCGTTCACCAAGCTCGACTCGGTGGAGTACTTGATCA
CCCGGTTCTTGGACAGCCTCAATAGCATTATGAAGTAATGAATGACGACCTGAAACACGGATAGC
CAGATGCATCTGACTAGCGCGCACAACTAGCGTAGGCACTGGAAT
Right flanking sequence: Indices 70456 -- 70955
TTGCCAGGGTTTTGAGTTACATCGTAGTTGGAGTTATAGTAGAGTTATCGTGGGTACAGGCACTG
GAGTTACATTTGCCCGTGTTTTACTGTCCTGCAACTGTCACCGGATAAGTGACCTCACCGCATTA
CGGGCTAGCCGAGCAGTTCCGAAGGTTGGGAGCATGTGCCATATGTACGGGCCTCCGTCGGCAAG
CATAGCCCAGTTGGGCTGCGGGGAACCCTTTCGTGGGTGGCGTTGGTGGGTGGGTTGGTCCAATC
ACCGCGCGGGGTTCGGACGGGTTTATCTATTGTTCGGTTGGGACTAGGAAGCCGACACGGCTGAC
AGCCATTGTCGGCCGGCGAATATAGAGGGTTAGTGGGGATGGCGAGGGTGGCGAGGGTGCTACAG
TTTCATAGGCCCGCCACGCTGGCTGCCTCCATTGGAACTACTAAGGTGAGCCAACGGTCGGAGAT
ATGGAGGTTGCCGTATACGGTAATCGAGGCACTGCGAGTGAAAAG
Found at i:71198 original size:13 final size:13
Alignment explanation
Indices: 71180--71220 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
71170 CAACTACGCC
71180 CCCACCACACTCA
1 CCCACCACACTCA
*
71193 CCCACCACACCCA
1 CCCACCACACTCA
*
71206 CCCACCACCCTCA
1 CCCACCACACTCA
71219 CC
1 CC
71221 ACCCTCTCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.27, C:0.68, G:0.00, T:0.05
Consensus pattern (13 bp):
CCCACCACACTCA
Left flanking sequence: Indices 70680 -- 71179
TTCGTGGGTGGCGTTGGTGGGTGGGTTGGTCCAATCACCGCGCGGGGTTCGGACGGGTTTATCTA
TTGTTCGGTTGGGACTAGGAAGCCGACACGGCTGACAGCCATTGTCGGCCGGCGAATATAGAGGG
TTAGTGGGGATGGCGAGGGTGGCGAGGGTGCTACAGTTTCATAGGCCCGCCACGCTGGCTGCCTC
CATTGGAACTACTAAGGTGAGCCAACGGTCGGAGATATGGAGGTTGCCGTATACGGTAATCGAGG
CACTGCGAGTGAAAAGTCGAGCTGGGCGGCGCCCCGTCGCAAAGGAAGCTACACGGCTGCAAAAG
ATGCCCGCCACAGACCACACCCGCCCGTCTAGCTAGCCCGTAGCCCCACGCGGGCCCCGAATCGC
CCACCACCCCGCCACTGTACGGCCCTGCCACAGTAACACTGCCAAGGCTGTCAAGGCTTGCCCAT
GCGTCGGACCACCCAGCCCAGCCCCAACCGCAAACCAACTACGCC
Right flanking sequence: Indices 71221 -- 71720
ACCCTCTCCCAGTAGACACCACCACCCCACCTTAGTAGTCCCGAACCCCGCATCAACGGTCGCGC
GTGTATACAACGCGAGCGTCAAATCGCTACCTCAGACCCACGGGAAAAATAACTTGACACCGGAC
CAGCAGTTGCAGTAGTTGCTGAAGTTGTATGAACCGCTGGAGCCGGTTGGTGTATAAAAGACTGT
TCCTGCGCTGCCCCCCCACCATGTCCCGCTACACGCTTTTGGCCGACAACCCGGCCATCGAGAAA
CCGGTGGTCGATGACCGAGCCTACCGGATGTTCACCATCGATGACAACCAGTTGAACGTGTTGGT
GATCACCGACCCGACGGCCGACAAGGCTGCGGCCGCGCTCGACGTCAACGTGGGTCTGTTTGCCG
ACCACGAGTACCGCATCCCCGGTTTGGCCCACTTTTGCGAACACTTGTTGTTTATGGGCACCGAA
AAGTATCCTGAGGAGAACGAGTACTCGCTGTACCTTGCCAAGCAC
Found at i:75321 original size:13 final size:13
Alignment explanation
Indices: 75303--75366 Score: 60
Period size: 13 Copynumber: 5.0 Consensus size: 13
75293 CTTACCATTG
75303 TGACCTGTCTCAA
1 TGACCTGTCTCAA
*
75316 TGACCTGTCTC-C
1 TGACCTGTCTCAA
* *
75328 TGCCCTGTCTC-C
1 TGACCTGTCTCAA
*
75340 TGGACCTGTCTCAT
1 T-GACCTGTCTCAA
*
75354 TGACCTGTTTCAA
1 TGACCTGTCTCAA
75367 GGGTGGCTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
12 12 0.28
13 30 0.70
14 1 0.02
ACGTcount: A:0.14, C:0.34, G:0.17, T:0.34
Consensus pattern (13 bp):
TGACCTGTCTCAA
Left flanking sequence: Indices 74803 -- 75302
TCATCGAATTCCATGACGCATTCGTACCCTTCGATCTATGTAAGACATCCAACATGGTGAAGAAC
AAACGGAAATTCACTAACGGTGCCAATGGGTTGAGGTGGAGTAAACTGTGGTTATTTCTCCTAGA
GGACTAGACGGTTACCAGGAATAGTATAGCTTTGCTACCTTTGCAGATTGATTAGCGTGAGTTTA
ACGTCCATAGACCTGTGTCTCTACAAACCATCATGGTTCAAACAACCACTGCGGTTGGTTTCGAT
CAAGCTCCAGAATGAGCACTTTCTAAAGCCCACCCAGGACGTCCACCACTGCGATTGGTCTCGAT
CAAGCTGAATGAGCACTTTCCATAGCCCAATCCAGGAGGTTCGCTTACGTAACGGACCAGTAGGA
ACCACCAGAGAATAGTTTAAACAGGCATGTAAATCACTGGCACCATGGACGAGAACATTATCTAG
CCTTTACAATCGACCAACTTTATTATTTTTTCACCCTTACCATTG
Right flanking sequence: Indices 75367 -- 75866
GGGTGGCTTACACGTCATGTACGCCTGACATTTCATACCCCCTTCTAATCCCTACCATAACCAGG
ACACCCCCCATGTCCCCACCACTCTCAAACTACGCGTTTCATGTTTTAAGGTTACACTTTTCACC
CGTGACACGCTTACTGGACACCAAACTAAACAAGCCACAAAACAAGCCACTAACAAGCTACTAAT
CAACCCACTAGATATCACCACTAGATACTACCACTACAAACCACCCAAACCCACACCACTAGACA
CCACACACACCCATCACCCCACAACCTCCTTCCATTCCTTCCCCACCACATTTTTCACGCACCAA
CGGGTCCCCTGCGTTGGATCAAAATAGACGAGCCAACAATAGGATCGCCGTACCCCACACTCTCG
AACCCACTCTCACACCCACTCTCACACCCACTCTCACACCCACCCACCATCCACCCCTACCCGCA
CCAGCCACCCACCAACCATCCACCCCTCACTACTCTCACACCCAC
Found at i:75569 original size:23 final size:23
Alignment explanation
Indices: 75525--75571 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
75515 CACCAAACTA
*
75525 AACAAGCCACAAAACAAGCCACT
1 AACAAGCCACAAAACAACCCACT
* * *
75548 AACAAGCTACTAATCAACCCACT
1 AACAAGCCACAAAACAACCCACT
75571 A
1 A
75572 GATATCACCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.49, C:0.34, G:0.06, T:0.11
Consensus pattern (23 bp):
AACAAGCCACAAAACAACCCACT
Left flanking sequence: Indices 75025 -- 75524
CCATCATGGTTCAAACAACCACTGCGGTTGGTTTCGATCAAGCTCCAGAATGAGCACTTTCTAAA
GCCCACCCAGGACGTCCACCACTGCGATTGGTCTCGATCAAGCTGAATGAGCACTTTCCATAGCC
CAATCCAGGAGGTTCGCTTACGTAACGGACCAGTAGGAACCACCAGAGAATAGTTTAAACAGGCA
TGTAAATCACTGGCACCATGGACGAGAACATTATCTAGCCTTTACAATCGACCAACTTTATTATT
TTTTCACCCTTACCATTGTGACCTGTCTCAATGACCTGTCTCCTGCCCTGTCTCCTGGACCTGTC
TCATTGACCTGTTTCAAGGGTGGCTTACACGTCATGTACGCCTGACATTTCATACCCCCTTCTAA
TCCCTACCATAACCAGGACACCCCCCATGTCCCCACCACTCTCAAACTACGCGTTTCATGTTTTA
AGGTTACACTTTTCACCCGTGACACGCTTACTGGACACCAAACTA
Right flanking sequence: Indices 75572 -- 76071
GATATCACCACTAGATACTACCACTACAAACCACCCAAACCCACACCACTAGACACCACACACAC
CCATCACCCCACAACCTCCTTCCATTCCTTCCCCACCACATTTTTCACGCACCAACGGGTCCCCT
GCGTTGGATCAAAATAGACGAGCCAACAATAGGATCGCCGTACCCCACACTCTCGAACCCACTCT
CACACCCACTCTCACACCCACTCTCACACCCACCCACCATCCACCCCTACCCGCACCAGCCACCC
ACCAACCATCCACCCCTCACTACTCTCACACCCACTCTTCCCACCTTCCCCACCTTCCACCTCCC
ACCTTCGCGTTTTTCGGACACCTAATCACCTGCCTCTCCACACCAACACCACCAACTACCATGAA
GTTCCACACGTTGGCCACGCTAGCAGCGCTATCGGCGGTGGTGGTGGGTGACCCGGCGCCCCCCG
CGCCCGCTGCCGCTGAGCCCGCGGCGCCAGCTGCCCCAGACATCC
Found at i:75629 original size:25 final size:26
Alignment explanation
Indices: 75591--75644 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
75581 ACTAGATACT
*
75591 ACCACTACAAACCACCCAAACCCA-C
1 ACCACTACAAACCACACAAACCCATC
* * *
75616 ACCACTAGACACCACACACACCCATC
1 ACCACTACAAACCACACAAACCCATC
75642 ACC
1 ACC
75645 CCACAACCTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.41, C:0.52, G:0.02, T:0.06
Consensus pattern (26 bp):
ACCACTACAAACCACACAAACCCATC
Left flanking sequence: Indices 75091 -- 75590
CCCACCCAGGACGTCCACCACTGCGATTGGTCTCGATCAAGCTGAATGAGCACTTTCCATAGCCC
AATCCAGGAGGTTCGCTTACGTAACGGACCAGTAGGAACCACCAGAGAATAGTTTAAACAGGCAT
GTAAATCACTGGCACCATGGACGAGAACATTATCTAGCCTTTACAATCGACCAACTTTATTATTT
TTTCACCCTTACCATTGTGACCTGTCTCAATGACCTGTCTCCTGCCCTGTCTCCTGGACCTGTCT
CATTGACCTGTTTCAAGGGTGGCTTACACGTCATGTACGCCTGACATTTCATACCCCCTTCTAAT
CCCTACCATAACCAGGACACCCCCCATGTCCCCACCACTCTCAAACTACGCGTTTCATGTTTTAA
GGTTACACTTTTCACCCGTGACACGCTTACTGGACACCAAACTAAACAAGCCACAAAACAAGCCA
CTAACAAGCTACTAATCAACCCACTAGATATCACCACTAGATACT
Right flanking sequence: Indices 75645 -- 76144
CCACAACCTCCTTCCATTCCTTCCCCACCACATTTTTCACGCACCAACGGGTCCCCTGCGTTGGA
TCAAAATAGACGAGCCAACAATAGGATCGCCGTACCCCACACTCTCGAACCCACTCTCACACCCA
CTCTCACACCCACTCTCACACCCACCCACCATCCACCCCTACCCGCACCAGCCACCCACCAACCA
TCCACCCCTCACTACTCTCACACCCACTCTTCCCACCTTCCCCACCTTCCACCTCCCACCTTCGC
GTTTTTCGGACACCTAATCACCTGCCTCTCCACACCAACACCACCAACTACCATGAAGTTCCACA
CGTTGGCCACGCTAGCAGCGCTATCGGCGGTGGTGGTGGGTGACCCGGCGCCCCCCGCGCCCGCT
GCCGCTGAGCCCGCGGCGCCAGCTGCCCCAGACATCCCGTTGCCCGCGGGCCTCACCCTCGCGGA
CTTCGACGCGCTGGTCGCCAAGCAGTTGCTGCTTGTGGAGTTCTT
Found at i:75766 original size:12 final size:12
Alignment explanation
Indices: 75749--75799 Score: 86
Period size: 12 Copynumber: 4.2 Consensus size: 12
75739 CCGTACCCCA
75749 CACTCTCGA-ACC
1 CACTCTC-ACACC
75761 CACTCTCACACC
1 CACTCTCACACC
75773 CACTCTCACACC
1 CACTCTCACACC
75785 CACTCTCACACC
1 CACTCTCACACC
75797 CAC
1 CAC
75800 CCACCATCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
11 1 0.03
12 37 0.97
ACGTcount: A:0.25, C:0.57, G:0.02, T:0.16
Consensus pattern (12 bp):
CACTCTCACACC
Left flanking sequence: Indices 75249 -- 75748
ATTATCTAGCCTTTACAATCGACCAACTTTATTATTTTTTCACCCTTACCATTGTGACCTGTCTC
AATGACCTGTCTCCTGCCCTGTCTCCTGGACCTGTCTCATTGACCTGTTTCAAGGGTGGCTTACA
CGTCATGTACGCCTGACATTTCATACCCCCTTCTAATCCCTACCATAACCAGGACACCCCCCATG
TCCCCACCACTCTCAAACTACGCGTTTCATGTTTTAAGGTTACACTTTTCACCCGTGACACGCTT
ACTGGACACCAAACTAAACAAGCCACAAAACAAGCCACTAACAAGCTACTAATCAACCCACTAGA
TATCACCACTAGATACTACCACTACAAACCACCCAAACCCACACCACTAGACACCACACACACCC
ATCACCCCACAACCTCCTTCCATTCCTTCCCCACCACATTTTTCACGCACCAACGGGTCCCCTGC
GTTGGATCAAAATAGACGAGCCAACAATAGGATCGCCGTACCCCA
Right flanking sequence: Indices 75800 -- 76299
CCACCATCCACCCCTACCCGCACCAGCCACCCACCAACCATCCACCCCTCACTACTCTCACACCC
ACTCTTCCCACCTTCCCCACCTTCCACCTCCCACCTTCGCGTTTTTCGGACACCTAATCACCTGC
CTCTCCACACCAACACCACCAACTACCATGAAGTTCCACACGTTGGCCACGCTAGCAGCGCTATC
GGCGGTGGTGGTGGGTGACCCGGCGCCCCCCGCGCCCGCTGCCGCTGAGCCCGCGGCGCCAGCTG
CCCCAGACATCCCGTTGCCCGCGGGCCTCACCCTCGCGGACTTCGACGCGCTGGTCGCCAAGCAG
TTGCTGCTTGTGGAGTTCTTCTCGCCGTACTGCCACCACTGTACCGCGTTTGCCCCCACCTGGGC
GCAGACCTTCCGCGAATTCAAGCCCGAGCTCGACAAAATGGGGGTCCAGATGCGCCAGGTGGACT
GTGCGGCCGAGGGCGACTTGTGCGACCGTGAGCAGATCTTTGGCT
Found at i:75874 original size:9 final size:8
Alignment explanation
Indices: 75862--75902 Score: 50
Period size: 9 Copynumber: 5.1 Consensus size: 8
75852 TACTCTCACA
75862 CCCACTCTT
1 CCCAC-CTT
75871 CCCACCTT
1 CCCACCTT
75879 CCCCACCTT
1 -CCCACCTT
75888 -CCACC-T
1 CCCACCTT
75894 CCCACCTT
1 CCCACCTT
75902 C
1 C
75903 GCGTTTTTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
6 1 0.03
7 10 0.34
8 5 0.17
9 13 0.45
ACGTcount: A:0.12, C:0.63, G:0.00, T:0.24
Consensus pattern (8 bp):
CCCACCTT
Left flanking sequence: Indices 75362 -- 75861
TTCAAGGGTGGCTTACACGTCATGTACGCCTGACATTTCATACCCCCTTCTAATCCCTACCATAA
CCAGGACACCCCCCATGTCCCCACCACTCTCAAACTACGCGTTTCATGTTTTAAGGTTACACTTT
TCACCCGTGACACGCTTACTGGACACCAAACTAAACAAGCCACAAAACAAGCCACTAACAAGCTA
CTAATCAACCCACTAGATATCACCACTAGATACTACCACTACAAACCACCCAAACCCACACCACT
AGACACCACACACACCCATCACCCCACAACCTCCTTCCATTCCTTCCCCACCACATTTTTCACGC
ACCAACGGGTCCCCTGCGTTGGATCAAAATAGACGAGCCAACAATAGGATCGCCGTACCCCACAC
TCTCGAACCCACTCTCACACCCACTCTCACACCCACTCTCACACCCACCCACCATCCACCCCTAC
CCGCACCAGCCACCCACCAACCATCCACCCCTCACTACTCTCACA
Right flanking sequence: Indices 75903 -- 76402
GCGTTTTTCGGACACCTAATCACCTGCCTCTCCACACCAACACCACCAACTACCATGAAGTTCCA
CACGTTGGCCACGCTAGCAGCGCTATCGGCGGTGGTGGTGGGTGACCCGGCGCCCCCCGCGCCCG
CTGCCGCTGAGCCCGCGGCGCCAGCTGCCCCAGACATCCCGTTGCCCGCGGGCCTCACCCTCGCG
GACTTCGACGCGCTGGTCGCCAAGCAGTTGCTGCTTGTGGAGTTCTTCTCGCCGTACTGCCACCA
CTGTACCGCGTTTGCCCCCACCTGGGCGCAGACCTTCCGCGAATTCAAGCCCGAGCTCGACAAAA
TGGGGGTCCAGATGCGCCAGGTGGACTGTGCGGCCGAGGGCGACTTGTGCGACCGTGAGCAGATC
TTTGGCTTTCCCCAGCTCCGGTTGTACGGGCCCGACCAGCGCGATACCGCCAAGGCCAAGTGGCG
GATGTTTGGGCTGTTCCCCCGGGCGGTGGAAAAACTGCCCGAGGC
Found at i:78242 original size:35 final size:36
Alignment explanation
Indices: 78198--78284 Score: 106
Period size: 38 Copynumber: 2.4 Consensus size: 36
78188 TGGTAGTGGG
* *
78198 ATTGACGAATATGGATGGCATTAGTA-GTGGGA-GA
1 ATTGACGAATATGGATGGCATTAGTATGAGGGATCA
*
78232 ACTTGACGAATATGCTGATGGCATTGGTATGAGGGATCA
1 A-TTGACGAATATG--GATGGCATTAGTATGAGGGATCA
78271 ATTGACGAATATGG
1 ATTGACGAATATGG
78285 TGATGACATG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
34 1 0.02
35 12 0.27
36 1 0.02
37 12 0.27
38 17 0.38
39 2 0.04
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (36 bp):
ATTGACGAATATGGATGGCATTAGTATGAGGGATCA
Left flanking sequence: Indices 77698 -- 78197
ACGTTGCCAGTCCCAACCGCCTCCGCAAGCTCAGCTCGGCGGTGGACCCGATGAAGTTCAAGGCG
GGCGACGCGGTGGTGATCTCGCAGGACGGGCAGACGGTGTGGGACCGCGACGCGCAGGGCAAGCC
GTTGACCAACGACGCGCTTGCGTTGCGGCCGGTGTTGCTTCTGATCTTGGACCCGTCGCTTGTGG
ACGAGAACACGATGTCGCAGCTTGCGCCGCGGCCGCAGGGGTACACGCTCTCGGTGTGGGGGTGG
GGGGCGCTTGTGGTGGCGGTGGGTGGTTTTGCCGGGTGGCGGTTGCGCAAGCGGAGACGGCGGGG
CACCACCGGGATGGGGATTATTGGAAACCTCGAGAAGAAGGACTAGTGTAATATACAAACTAAGA
GGGAGGCGGGGGAGCTGTAGCAGGACCTGAAACCGAAGCTTCACAAATTATCCATGTTATCAATA
ACTGGTAGGGAGGAAGGTTTGCCATGTGATTGCCTTGGTAGTGGG
Right flanking sequence: Indices 78285 -- 78784
TGATGACATGGATAGTAGTGGTAGTGTATTAGTAGTGATTGTGTGTTACTGATTGTTTCATGGAG
GTATTGGTATTATCAGGCTCTGGTTTAATTCGATATCGACTGAGTCAACTGTGAACCGAGTTCTT
TGATGATGTTTCGTGATGGTGGTACAATCGAATTAATGATGGCATTGATTGTATTGGTAATGTAT
TGGTGGTGTATTGGTGGTGTATTGGTGATTGTATTGGTGGTGTATTGGTAGATTGCATCGGAAAT
GATTGTACTGGTGGTGTGTTAGTTGTGATTACATTTGTAGTGAATGTATTAGTGTTATCGGTGGC
TCTGGTTCAATTGGTGTAGAATCGATAGTATTGGTAGTTGAATATTCCTTGGAATTGGTAATGAA
GTCGATAGGAATGGATTGAGGATTAGTATCGGTGGTGTTGATACAATTGATGAGACGATTCGGTA
GATGGAACGCTTGTGGATTGATTCGATTGATCTAATCAAAGGTAC
Found at i:78480 original size:11 final size:11
Alignment explanation
Indices: 78464--78530 Score: 80
Period size: 11 Copynumber: 6.0 Consensus size: 11
78454 TGGCATTGAT
*
78464 TGTATTGGTAA
1 TGTATTGGTAG
*
78475 TGTATTGGTGG
1 TGTATTGGTAG
*
78486 TGTATTGGTGG
1 TGTATTGGTAG
*
78497 TGTATTGGTGAT
1 TGTATTGGT-AG
*
78509 TGTATTGGTGG
1 TGTATTGGTAG
78520 TGTATTGGTAG
1 TGTATTGGTAG
78531 ATTGCATCGG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
11 39 0.81
12 9 0.19
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.46
Consensus pattern (11 bp):
TGTATTGGTAG
Left flanking sequence: Indices 77964 -- 78463
CTTGTGGTGGCGGTGGGTGGTTTTGCCGGGTGGCGGTTGCGCAAGCGGAGACGGCGGGGCACCAC
CGGGATGGGGATTATTGGAAACCTCGAGAAGAAGGACTAGTGTAATATACAAACTAAGAGGGAGG
CGGGGGAGCTGTAGCAGGACCTGAAACCGAAGCTTCACAAATTATCCATGTTATCAATAACTGGT
AGGGAGGAAGGTTTGCCATGTGATTGCCTTGGTAGTGGGATTGACGAATATGGATGGCATTAGTA
GTGGGAGAACTTGACGAATATGCTGATGGCATTGGTATGAGGGATCAATTGACGAATATGGTGAT
GACATGGATAGTAGTGGTAGTGTATTAGTAGTGATTGTGTGTTACTGATTGTTTCATGGAGGTAT
TGGTATTATCAGGCTCTGGTTTAATTCGATATCGACTGAGTCAACTGTGAACCGAGTTCTTTGAT
GATGTTTCGTGATGGTGGTACAATCGAATTAATGATGGCATTGAT
Right flanking sequence: Indices 78531 -- 79030
ATTGCATCGGAAATGATTGTACTGGTGGTGTGTTAGTTGTGATTACATTTGTAGTGAATGTATTA
GTGTTATCGGTGGCTCTGGTTCAATTGGTGTAGAATCGATAGTATTGGTAGTTGAATATTCCTTG
GAATTGGTAATGAAGTCGATAGGAATGGATTGAGGATTAGTATCGGTGGTGTTGATACAATTGAT
GAGACGATTCGGTAGATGGAACGCTTGTGGATTGATTCGATTGATCTAATCAAAGGTACCAATGG
GTTTATGTCAATAATTAAGGCTATAGTATTTGTAATGATTGTATCGTAATGTGGTTGTTTTGACA
GCCCTCAATCGGTAGAAACCAAAGTTGGTGCTAATCATCAAGTTCGGATTCTCCTATTCAAACAC
GTCAACACCAATTCCCACTGTACCACTCCTCTCTTTCTCCTTTATTGCGGCTATGTACACATAAT
CCGGTTACTTTCGTACCAGCCTCATCCCCTCCGCTTTCTCGCCCC
Found at i:78517 original size:34 final size:33
Alignment explanation
Indices: 78464--78528 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 33
78454 TGGCATTGAT
78464 TGTATTGGTAATGTATTGGTGGTGTATTGGTGG
1 TGTATTGGTAATGTATTGGTGGTGTATTGGTGG
*
78497 TGTATTGGTGATTGTATTGGTGGTGTATTGGT
1 TGTATTGGT-AATGTATTGGTGGTGTATTGGT
78529 AGATTGCATC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 9 0.30
34 21 0.70
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (33 bp):
TGTATTGGTAATGTATTGGTGGTGTATTGGTGG
Left flanking sequence: Indices 77964 -- 78463
CTTGTGGTGGCGGTGGGTGGTTTTGCCGGGTGGCGGTTGCGCAAGCGGAGACGGCGGGGCACCAC
CGGGATGGGGATTATTGGAAACCTCGAGAAGAAGGACTAGTGTAATATACAAACTAAGAGGGAGG
CGGGGGAGCTGTAGCAGGACCTGAAACCGAAGCTTCACAAATTATCCATGTTATCAATAACTGGT
AGGGAGGAAGGTTTGCCATGTGATTGCCTTGGTAGTGGGATTGACGAATATGGATGGCATTAGTA
GTGGGAGAACTTGACGAATATGCTGATGGCATTGGTATGAGGGATCAATTGACGAATATGGTGAT
GACATGGATAGTAGTGGTAGTGTATTAGTAGTGATTGTGTGTTACTGATTGTTTCATGGAGGTAT
TGGTATTATCAGGCTCTGGTTTAATTCGATATCGACTGAGTCAACTGTGAACCGAGTTCTTTGAT
GATGTTTCGTGATGGTGGTACAATCGAATTAATGATGGCATTGAT
Right flanking sequence: Indices 78529 -- 79028
AGATTGCATCGGAAATGATTGTACTGGTGGTGTGTTAGTTGTGATTACATTTGTAGTGAATGTAT
TAGTGTTATCGGTGGCTCTGGTTCAATTGGTGTAGAATCGATAGTATTGGTAGTTGAATATTCCT
TGGAATTGGTAATGAAGTCGATAGGAATGGATTGAGGATTAGTATCGGTGGTGTTGATACAATTG
ATGAGACGATTCGGTAGATGGAACGCTTGTGGATTGATTCGATTGATCTAATCAAAGGTACCAAT
GGGTTTATGTCAATAATTAAGGCTATAGTATTTGTAATGATTGTATCGTAATGTGGTTGTTTTGA
CAGCCCTCAATCGGTAGAAACCAAAGTTGGTGCTAATCATCAAGTTCGGATTCTCCTATTCAAAC
ACGTCAACACCAATTCCCACTGTACCACTCCTCTCTTTCTCCTTTATTGCGGCTATGTACACATA
ATCCGGTTACTTTCGTACCAGCCTCATCCCCTCCGCTTTCTCGCC
Found at i:81045 original size:11 final size:11
Alignment explanation
Indices: 81029--81064 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
81019 ACACATCACA
81029 TATACACAACG
1 TATACACAACG
81040 TATACACAACG
1 TATACACAACG
*
81051 TATACATAACG
1 TATACACAACG
81062 TAT
1 TAT
81065 CCATGTCCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.25
Consensus pattern (11 bp):
TATACACAACG
Left flanking sequence: Indices 80529 -- 81028
ATTTACCCTCCTAGCGTAACGCTTGAGGCAACCACAAAGAAACCGGTCTATATGCACTACCGTCA
CCAAAGACGAGGCGAAAGCGTCCAGCGCTGATAGAGAAAACCCGGAAAATCAACCTAAAACTCTA
TCAGTAGCTGTAGCTAACACCAGTAGTGAGTTTTTGTACTCGTTTGGGCGTCTTTTGGGGGAGCG
CCAGGCACGTAAGCGATTTCTAGCCCGAAGTTAGTCAATTGGTCTTGGAGGTGTCTGGGGTGATC
AGGGAACTTACGCGATGGTCGCATTTGTCTCTCGTTGTCGGGAACTGTGCTGGGAGCTGACGTGT
GTTTCAAGCCAGTGTGGTGTAGATCTGATATTTTGGCGTGCGTCTCAGCGGTTGCAGTTTCCTAA
GAATCAAAGCCGACCCAGGCCTTGAAAAATACTATAAATAGATGGATAACGGAAATTAGCCTAGT
CTAAAGTCTTAAGAGCCACGGACAAATCTGTACTTACACATCACA
Right flanking sequence: Indices 81065 -- 81564
CCATGTCCCTTCCAACGCTAATACGATCACTAACCTGGGAGTCCCAGTCGTCCAACCATAACCCA
CACCATCGCACTAAAGCGTTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCACCAGCCAGGCT
AGGTGCAAACAAACAGGCTAGGGGCAAAAAACCCCGTAAACCTTGCCTCCACACACTCTTACCTT
CTGTGTATTATGTCTATGAATAAATACCATGCATTAGGCCACCAACTTGCCGGAGATCTCCAAGA
GATACGTCTTGAAGTACTCAAAGCTCACCAACGTCACCGCGGACGCCGGCACCGTGCGGACCAAG
TTGATGATGTACCCCGAATAGAACCCGCGGAACCCGTCCTGGCGGAACACCAGCTTGATGGTCTC
CACCATCCCCACCTTGTGGTGGTCGCCCGCCTGGATCTGCATCCGGGTGCGCACGATCTCGTGTG
GGTAGGTGATCAGCAGTGCAATCATCTTCAGGATCGCCAGCGCCC
Found at i:81213 original size:19 final size:18
Alignment explanation
Indices: 81189--81226 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
81179 CCCCACCAGC
*
81189 CAGGCTAGGTGCAAACAAA
1 CAGGCTAGGGGCAAA-AAA
81208 CAGGCTAGGGGCAAAAAA
1 CAGGCTAGGGGCAAAAAA
81226 C
1 C
81227 CCCGTAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.42, C:0.21, G:0.29, T:0.08
Consensus pattern (18 bp):
CAGGCTAGGGGCAAAAAA
Left flanking sequence: Indices 80689 -- 81188
TTTTTGTACTCGTTTGGGCGTCTTTTGGGGGAGCGCCAGGCACGTAAGCGATTTCTAGCCCGAAG
TTAGTCAATTGGTCTTGGAGGTGTCTGGGGTGATCAGGGAACTTACGCGATGGTCGCATTTGTCT
CTCGTTGTCGGGAACTGTGCTGGGAGCTGACGTGTGTTTCAAGCCAGTGTGGTGTAGATCTGATA
TTTTGGCGTGCGTCTCAGCGGTTGCAGTTTCCTAAGAATCAAAGCCGACCCAGGCCTTGAAAAAT
ACTATAAATAGATGGATAACGGAAATTAGCCTAGTCTAAAGTCTTAAGAGCCACGGACAAATCTG
TACTTACACATCACATATACACAACGTATACACAACGTATACATAACGTATCCATGTCCCTTCCA
ACGCTAATACGATCACTAACCTGGGAGTCCCAGTCGTCCAACCATAACCCACACCATCGCACTAA
AGCGTTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCACCAGC
Right flanking sequence: Indices 81227 -- 81726
CCCGTAAACCTTGCCTCCACACACTCTTACCTTCTGTGTATTATGTCTATGAATAAATACCATGC
ATTAGGCCACCAACTTGCCGGAGATCTCCAAGAGATACGTCTTGAAGTACTCAAAGCTCACCAAC
GTCACCGCGGACGCCGGCACCGTGCGGACCAAGTTGATGATGTACCCCGAATAGAACCCGCGGAA
CCCGTCCTGGCGGAACACCAGCTTGATGGTCTCCACCATCCCCACCTTGTGGTGGTCGCCCGCCT
GGATCTGCATCCGGGTGCGCACGATCTCGTGTGGGTAGGTGATCAGCAGTGCAATCATCTTCAGG
ATCGCCAGCGCCCCGATGAGCCGCACTAGGTACCCGTCGTCGTGCACGGGGATGTCACAGCGGAA
CACCTGTTTGAGTTTTTCGTACACGGGGAAGTGGATCCCCACGTGGACAAGGCCGAAGAGCGACG
GCAAGAGGCCCAGGTAGAACACGGGGAGGCCCTCCTCCTTGTACA
Found at i:82950 original size:12 final size:12
Alignment explanation
Indices: 82935--83001 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
82925 GTAGTCTATC
*
82935 GGTAGAGTTATT
1 GGTAGAGTTATG
*
82947 GGTAGTGTTATG
1 GGTAGAGTTATG
* * *
82959 GGTAGTGTCACG
1 GGTAGAGTTATG
*
82971 GGTAGTGTTATCG
1 GGTAGAGTTAT-G
*
82984 GGTAGTGTTATCG
1 GGTAGAGTTAT-G
82997 GGTAG
1 GGTAG
83002 TATTATCAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
12 29 0.60
13 19 0.40
ACGTcount: A:0.18, C:0.06, G:0.40, T:0.36
Consensus pattern (12 bp):
GGTAGAGTTATG
Left flanking sequence: Indices 82435 -- 82934
GAGGCGCTTGCGAGGGTGGGTGGACGATGGCTTCGAAGCAGGCGAAAAACGAGCTGAGGGTTTGT
AGGGGGGCTGTTTGGGAGGTAGGGGGGCTGGTTCAGCGCTCGGGCGGCGGTTTGTGTGTGCGACG
AGGGCTAAACTGCGGGATGGCGTGGGCGATGCTTATGTCCGAGTTGTTGGTCGCTGAGGTCTTTG
CGCGCGGTTAAAAACGGGCGCGCACCAGGGTGGGCTTAAGCGAGAGGCGATCCGGGGAAACGAGA
GGGGTAGGTGGGTGAGGGTGGAGAGGCTACGGAGATATGGGGAGGGTACGGTGGTTTTGGTGGGG
GGTGCCCGAGATCGGCGGAAAAAAGCGGTGAAAACGGTGGTGAAAAAGCGATGGTGGTTGCTGGG
TGCATATAGTGGTGGAGAGGTGAGGTATTTAGTAAGGTTATGGTTTGGCTGTGGTTGCTCTGGGG
ATGGAACTGGGGTGAATGGGGTGGTGGTATATCGCGTAGTCTATC
Right flanking sequence: Indices 83002 -- 83501
TATTATCAGGTAGTGTGGAATGTGATAGGGTGGGCAAAGAGTGTGATTGGCTGCTATTTGTATTA
CCAGAAGTTCCACGAAAGTTTACCCTGGCACCCAAACCGCCAGCCCATCCATTCCACACCCCTCC
ACCCTTATCGCGCCATTCCACCGCTCCTTCACCCACCGCTTCTTCCCCCCACTCACGCGTCGGTG
TTAGCCGCCTGCATACAGCCACCCATATCACCAGATCATCTCCACCACCCACCATGACCAAGCTC
TTCCTCTCCGCGAAAGCAACCCTCGAGGGAGTCACCGGGCTCAAGCCCAAGGACTCGCCCCAGGA
CAAGTACGAATACACCTTCACCATTGAGTGCACCCGCTGCCGCACCGTGCACGACAAGCCCGTCA
CCATCAACCAGTACGAGCACCACGAGCACGCCGGGTCGCGGGGCGAGCTGCTGTTCGTGTTCCGG
TGCAAGGAGTGCAAGAGCGAGCACAACGCGAACATCGAGGTGACG
Found at i:82987 original size:13 final size:13
Alignment explanation
Indices: 82947--83017 Score: 101
Period size: 13 Copynumber: 5.6 Consensus size: 13
82937 TAGAGTTATT
82947 GGTAGTGTTAT-G
1 GGTAGTGTTATCG
*
82959 GGTAGTGTCA-CG
1 GGTAGTGTTATCG
82971 GGTAGTGTTATCG
1 GGTAGTGTTATCG
82984 GGTAGTGTTATCG
1 GGTAGTGTTATCG
* *
82997 GGTAGTATTATCA
1 GGTAGTGTTATCG
83010 GGTAGTGT
1 GGTAGTGT
83018 GGAATGTGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
12 19 0.37
13 33 0.63
ACGTcount: A:0.18, C:0.07, G:0.38, T:0.37
Consensus pattern (13 bp):
GGTAGTGTTATCG
Left flanking sequence: Indices 82447 -- 82946
AGGGTGGGTGGACGATGGCTTCGAAGCAGGCGAAAAACGAGCTGAGGGTTTGTAGGGGGGCTGTT
TGGGAGGTAGGGGGGCTGGTTCAGCGCTCGGGCGGCGGTTTGTGTGTGCGACGAGGGCTAAACTG
CGGGATGGCGTGGGCGATGCTTATGTCCGAGTTGTTGGTCGCTGAGGTCTTTGCGCGCGGTTAAA
AACGGGCGCGCACCAGGGTGGGCTTAAGCGAGAGGCGATCCGGGGAAACGAGAGGGGTAGGTGGG
TGAGGGTGGAGAGGCTACGGAGATATGGGGAGGGTACGGTGGTTTTGGTGGGGGGTGCCCGAGAT
CGGCGGAAAAAAGCGGTGAAAACGGTGGTGAAAAAGCGATGGTGGTTGCTGGGTGCATATAGTGG
TGGAGAGGTGAGGTATTTAGTAAGGTTATGGTTTGGCTGTGGTTGCTCTGGGGATGGAACTGGGG
TGAATGGGGTGGTGGTATATCGCGTAGTCTATCGGTAGAGTTATT
Right flanking sequence: Indices 83018 -- 83517
GGAATGTGATAGGGTGGGCAAAGAGTGTGATTGGCTGCTATTTGTATTACCAGAAGTTCCACGAA
AGTTTACCCTGGCACCCAAACCGCCAGCCCATCCATTCCACACCCCTCCACCCTTATCGCGCCAT
TCCACCGCTCCTTCACCCACCGCTTCTTCCCCCCACTCACGCGTCGGTGTTAGCCGCCTGCATAC
AGCCACCCATATCACCAGATCATCTCCACCACCCACCATGACCAAGCTCTTCCTCTCCGCGAAAG
CAACCCTCGAGGGAGTCACCGGGCTCAAGCCCAAGGACTCGCCCCAGGACAAGTACGAATACACC
TTCACCATTGAGTGCACCCGCTGCCGCACCGTGCACGACAAGCCCGTCACCATCAACCAGTACGA
GCACCACGAGCACGCCGGGTCGCGGGGCGAGCTGCTGTTCGTGTTCCGGTGCAAGGAGTGCAAGA
GCGAGCACAACGCGAACATCGAGGTGACGAAAAAAACCGTGGACG
Found at i:83007 original size:26 final size:26
Alignment explanation
Indices: 82931--83017 Score: 101
Period size: 24 Copynumber: 3.5 Consensus size: 26
82921 TCGCGTAGTC
* *
82931 TATC-GGTAGAGTTAT-TGGTAGTGT
1 TATCGGGTAGTGTTATCGGGTAGTGT
*
82955 TAT-GGGTAGTGTCA-CGGGTAGTGT
1 TATCGGGTAGTGTTATCGGGTAGTGT
*
82979 TATCGGGTAGTGTTATCGGGTAGTAT
1 TATCGGGTAGTGTTATCGGGTAGTGT
*
83005 TATCAGGTAGTGT
1 TATCGGGTAGTGT
83018 GGAATGTGAT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
24 22 0.42
25 10 0.19
26 21 0.40
ACGTcount: A:0.20, C:0.07, G:0.36, T:0.38
Consensus pattern (26 bp):
TATCGGGTAGTGTTATCGGGTAGTGT
Left flanking sequence: Indices 82431 -- 82930
TGAGGAGGCGCTTGCGAGGGTGGGTGGACGATGGCTTCGAAGCAGGCGAAAAACGAGCTGAGGGT
TTGTAGGGGGGCTGTTTGGGAGGTAGGGGGGCTGGTTCAGCGCTCGGGCGGCGGTTTGTGTGTGC
GACGAGGGCTAAACTGCGGGATGGCGTGGGCGATGCTTATGTCCGAGTTGTTGGTCGCTGAGGTC
TTTGCGCGCGGTTAAAAACGGGCGCGCACCAGGGTGGGCTTAAGCGAGAGGCGATCCGGGGAAAC
GAGAGGGGTAGGTGGGTGAGGGTGGAGAGGCTACGGAGATATGGGGAGGGTACGGTGGTTTTGGT
GGGGGGTGCCCGAGATCGGCGGAAAAAAGCGGTGAAAACGGTGGTGAAAAAGCGATGGTGGTTGC
TGGGTGCATATAGTGGTGGAGAGGTGAGGTATTTAGTAAGGTTATGGTTTGGCTGTGGTTGCTCT
GGGGATGGAACTGGGGTGAATGGGGTGGTGGTATATCGCGTAGTC
Right flanking sequence: Indices 83018 -- 83517
GGAATGTGATAGGGTGGGCAAAGAGTGTGATTGGCTGCTATTTGTATTACCAGAAGTTCCACGAA
AGTTTACCCTGGCACCCAAACCGCCAGCCCATCCATTCCACACCCCTCCACCCTTATCGCGCCAT
TCCACCGCTCCTTCACCCACCGCTTCTTCCCCCCACTCACGCGTCGGTGTTAGCCGCCTGCATAC
AGCCACCCATATCACCAGATCATCTCCACCACCCACCATGACCAAGCTCTTCCTCTCCGCGAAAG
CAACCCTCGAGGGAGTCACCGGGCTCAAGCCCAAGGACTCGCCCCAGGACAAGTACGAATACACC
TTCACCATTGAGTGCACCCGCTGCCGCACCGTGCACGACAAGCCCGTCACCATCAACCAGTACGA
GCACCACGAGCACGCCGGGTCGCGGGGCGAGCTGCTGTTCGTGTTCCGGTGCAAGGAGTGCAAGA
GCGAGCACAACGCGAACATCGAGGTGACGAAAAAAACCGTGGACG
Found at i:83805 original size:13 final size:13
Alignment explanation
Indices: 83783--83858 Score: 102
Period size: 13 Copynumber: 6.0 Consensus size: 13
83773 TGAATATAGT
83783 AGGGATAGAATGG
1 AGGGATAGAATGG
*
83796 AGGAATAGAATGG
1 AGGGATAGAATGG
*
83809 AGGGATGGAATGG
1 AGGGATAGAATGG
83822 AGGGATAGAAT--
1 AGGGATAGAATGG
* *
83833 AGAGATAGAATGA
1 AGGGATAGAATGG
83846 AGGGATAGAATGG
1 AGGGATAGAATGG
83859 GGAGAGGAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
11 10 0.19
13 44 0.81
ACGTcount: A:0.42, C:0.00, G:0.42, T:0.16
Consensus pattern (13 bp):
AGGGATAGAATGG
Left flanking sequence: Indices 83283 -- 83782
CTCGAGGGAGTCACCGGGCTCAAGCCCAAGGACTCGCCCCAGGACAAGTACGAATACACCTTCAC
CATTGAGTGCACCCGCTGCCGCACCGTGCACGACAAGCCCGTCACCATCAACCAGTACGAGCACC
ACGAGCACGCCGGGTCGCGGGGCGAGCTGCTGTTCGTGTTCCGGTGCAAGGAGTGCAAGAGCGAG
CACAACGCGAACATCGAGGTGACGAAAAAAACCGTGGACGAGCTGGAGGTGTGGACGCCGTTGTT
GGAGTTGGATGCCCGGGGTCTTGATTTCAAGCTGTTTATCCCCCAGGGCCAGTTTGAGTGTGTGG
GAGCGGAGTCCGGGACGAAGTTTGCCGAGGTGGAGTTGGAGGAGAACGAGTGGTACGACTATGAC
GAGAAGGCGGGGGCCGAGGTGAGCATCACCGAGGTGGAGTGGCGGATCGAGCGGACGTAGGGTGA
TGGTTAGGGATGAGATAATGAGTGTACATATGGATTGAATATAGT
Right flanking sequence: Indices 83859 -- 84358
GGAGAGGAAGTATTATGCAAGGGGTAACGACACAAGGTGAGTTAGACAAAACAGGTAGACAATAC
GGGCGGTACGCAGCTTGAGATGGATCAATGTAACACTTACGAGGTAGAAAACGCGCCAATTGACC
CAGCAGGGCTGATAGCTCTAGCTTGAGCTCCAGCTTATTTGACTCAATGTCTACTTTAGGGGGTA
ACTTGCGTAACTTGATCGATTCATTCCCTATCCAAAGTTGACCGAGTAAAGCTTTCAGTGACCTT
CCAACGACCACTCTTGCCCGCTCCAGCCGACCCAGCCCGCGGCCCACCAGACCGGCGGCCACGTC
ACAATGGTACGCTCGCATAATTGAAATTAGCTCGACGCGATGGACTACCACGCATCAAGACCCGG
CAACAACCAGCCGAAGAGCCCAAAAACACACCAGACCCCGGTCGAACCTACCCACCACCTGGCCC
ACCCATTGCACCCCATCTCCGACGACAATTACTCCCCTCCCGTGA
Found at i:85784 original size:9 final size:9
Alignment explanation
Indices: 85770--85794 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
85760 AATGTAGTAA
85770 TAGATGAAT
1 TAGATGAAT
85779 TAGATGAAT
1 TAGATGAAT
85788 TAGATGA
1 TAGATGA
85795 GTCAGGAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (9 bp):
TAGATGAAT
Left flanking sequence: Indices 85270 -- 85769
ACCACCATTCCTCCCTACGCCAAGAGCGTGTTTGAGGGGTGGTCCAAGATCACCGCCGTCGATGG
TATTGGCGGGTTGTACAAGGGCTTGGTGCCGTTGTGGTGCCGTCAGATCCCCTACACCATGGTCA
AGTTCACCACGTTCGAGGCCACGGTGGACCAGATCTACAAGTACATGGGCAAGACCCCGAAGGAC
TTCACGCCCGTGCAGCAGACCGGGGTGTCGTTCTTGGGTGGTTACATTGCCGGTATTTTCTGTGC
GGTGGTGTCGCACCCCGCGGACGTGATGGTGTCCAAGGTGACCACTGACAAGCACGCGGGCGAGC
TGACCATGGGCGCGGTGTCGCGGATCTACGGCAACATTGGGTTCAGCGGGTTGTGGAACGGGTTG
CCGATGAGAATTGTCATGATCGGTACGTTGACCGGGTTCCAGTGGTTGATCTACGACACGTTCAA
GGTGTCGGTTGGGTTGCCCACCACCGGTGGCCACTAATGTAGTAA
Right flanking sequence: Indices 85795 -- 86294
GTCAGGAGAGTGCGTAGGACGCAATGACAGGCAGCACAGTGGCACGAGGCTGCTAAAAAGGGGCA
TGGAACGTGTCATGGAACGTCTCGCTCGTATATTTGAGGTACCGTCCCTAAAGGGTAATGTAATG
AGCAAACAACGGGATAACCGCACGCGAACGTCGCGTGGCGGGGCTTTGACAACGTGATCTCGGGT
GGTTGCGGGGCGATAAACCACCCCGCTGAACAGCAGCAAATTATGGCCTGAAAAAGTGGCCAGGT
TGGTTTCAAGGCGACGCTGTCAAAGCTGTCAAAGCTGTCAACGGCTGCAAAACCAGTGATACACC
GTTGACATCGTGTGCAAAACTAGTGACACATATATCTGCGACTGTATTGTGGCTGCATTAAGCCT
TATTGTGTGCTATACCAATGTCCTACACTACAGATTGCACAATGGGACAGTACCACGACCAAACC
CAACGGTCCAGAAGTAACCCACTCCCACCTACAGCCCCTACTTTC
Found at i:86084 original size:9 final size:9
Alignment explanation
Indices: 86070--86095 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
86060 TCAAGGCGAC
86070 GCTGTCAAA
1 GCTGTCAAA
86079 GCTGTCAAA
1 GCTGTCAAA
86088 GCTGTCAA
1 GCTGTCAA
86096 CGGCTGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (9 bp):
GCTGTCAAA
Left flanking sequence: Indices 85570 -- 86069
ACCACTGACAAGCACGCGGGCGAGCTGACCATGGGCGCGGTGTCGCGGATCTACGGCAACATTGG
GTTCAGCGGGTTGTGGAACGGGTTGCCGATGAGAATTGTCATGATCGGTACGTTGACCGGGTTCC
AGTGGTTGATCTACGACACGTTCAAGGTGTCGGTTGGGTTGCCCACCACCGGTGGCCACTAATGT
AGTAATAGATGAATTAGATGAATTAGATGAGTCAGGAGAGTGCGTAGGACGCAATGACAGGCAGC
ACAGTGGCACGAGGCTGCTAAAAAGGGGCATGGAACGTGTCATGGAACGTCTCGCTCGTATATTT
GAGGTACCGTCCCTAAAGGGTAATGTAATGAGCAAACAACGGGATAACCGCACGCGAACGTCGCG
TGGCGGGGCTTTGACAACGTGATCTCGGGTGGTTGCGGGGCGATAAACCACCCCGCTGAACAGCA
GCAAATTATGGCCTGAAAAAGTGGCCAGGTTGGTTTCAAGGCGAC
Right flanking sequence: Indices 86096 -- 86595
CGGCTGCAAAACCAGTGATACACCGTTGACATCGTGTGCAAAACTAGTGACACATATATCTGCGA
CTGTATTGTGGCTGCATTAAGCCTTATTGTGTGCTATACCAATGTCCTACACTACAGATTGCACA
ATGGGACAGTACCACGACCAAACCCAACGGTCCAGAAGTAACCCACTCCCACCTACAGCCCCTAC
TTTCTCTGTTTATTCGGAGACCCGGTCTCCTATTACTATGCAAGGGGGACTAGTCCCACACGTTC
TTGAAAAGATCGCTGTCGAGCCCGTTCAGACCAAACGACGACTTGACGGGCGCCGGGGTGTTGTA
TGAGGCAGGCACCGCGTCCGCCCACTCGTTGGCCCACTGCTGCTGCTGCGGCGGCTGGCGGGGCT
GGTGCTGAGGCGTGGCCGGCGGCTGCTGCGGGGTCGACGACACCTGCTGCACCGGAGTCAGGGTT
GCTGCGGGGTTGGAGCCAAAGTTCAACCCCTGCAACGAGTTGGCC
Found at i:86486 original size:24 final size:24
Alignment explanation
Indices: 86459--86514 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
86449 TTGGCCCACT
*
86459 GCTGCTGCTGCGGCGGCTGG-CGG-G
1 GCTGCTGCTGAGGC-G-TGGCCGGCG
*
86483 GCTGGTGCTGAGGCGTGGCCGGCG
1 GCTGCTGCTGAGGCGTGGCCGGCG
86507 GCTGCTGC
1 GCTGCTGC
86515 GGGGTCGACG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 3 0.11
23 4 0.15
24 20 0.74
ACGTcount: A:0.02, C:0.29, G:0.52, T:0.18
Consensus pattern (24 bp):
GCTGCTGCTGAGGCGTGGCCGGCG
Left flanking sequence: Indices 85959 -- 86458
GTGGCGGGGCTTTGACAACGTGATCTCGGGTGGTTGCGGGGCGATAAACCACCCCGCTGAACAGC
AGCAAATTATGGCCTGAAAAAGTGGCCAGGTTGGTTTCAAGGCGACGCTGTCAAAGCTGTCAAAG
CTGTCAACGGCTGCAAAACCAGTGATACACCGTTGACATCGTGTGCAAAACTAGTGACACATATA
TCTGCGACTGTATTGTGGCTGCATTAAGCCTTATTGTGTGCTATACCAATGTCCTACACTACAGA
TTGCACAATGGGACAGTACCACGACCAAACCCAACGGTCCAGAAGTAACCCACTCCCACCTACAG
CCCCTACTTTCTCTGTTTATTCGGAGACCCGGTCTCCTATTACTATGCAAGGGGGACTAGTCCCA
CACGTTCTTGAAAAGATCGCTGTCGAGCCCGTTCAGACCAAACGACGACTTGACGGGCGCCGGGG
TGTTGTATGAGGCAGGCACCGCGTCCGCCCACTCGTTGGCCCACT
Right flanking sequence: Indices 86515 -- 87014
GGGGTCGACGACACCTGCTGCACCGGAGTCAGGGTTGCTGCGGGGTTGGAGCCAAAGTTCAACCC
CTGCAACGAGTTGGCCACCGAGTTGACGCTGTTCTGCAGCTGCGACCGCTGCTGGTAGGTGTTGT
GCAGCGGCTGGGGCGACACAAACGAGTTCAGGGCCAGCGGGGACGAGTACAACGAGAGGATCAGT
TTCTTCAAGTCTGGCCGCGAGTTGAGCAGCCCGCCGGTGGACTGGGCCAGCTGGGGCCCCGTGGG
CGCGCGCTGCAACGGCGGCGGCCGCTGTGACGGAGCCTGCTGTTTTGGAGGCACCGGGGGCAGCG
GGGTCGAGAAGATGTCGTCGAGGAGCAGCGCCGACAGCAGCTGCTTCGGGCGCGCCTCCTGGTGG
CTGGCAACCGCTGGCTGCGCGGGCTGGGCCGGCGGGGCCGCCAGCAGCGGTTTCGGGGTCTTCAT
CGCCAACGGGTCGGGCACCGCGGTGCTCGCAACCCACTTTTTCAA
Found at i:90583 original size:12 final size:12
Alignment explanation
Indices: 90568--90599 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
90558 ACCTGCTGCT
90568 GCTGCGGCCCGA
1 GCTGCGGCCCGA
90580 GCTGCGGCCCGA
1 GCTGCGGCCCGA
90592 GCTGCGGC
1 GCTGCGGC
90600 TGACGACGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.41, G:0.44, T:0.09
Consensus pattern (12 bp):
GCTGCGGCCCGA
Left flanking sequence: Indices 90068 -- 90567
CCAGCCAAGCTGCTGGTGGGCTACTACGACCCCACCACGTACAAGTGCCGCCTGCGCTCGCGGCT
GCCGCTGAAGGAGCGCTCGCGCAGCCCCGACGGCAAGACGGTGGCGATCTCGCCCGCCGTGGAGG
TGGTGCTGGAGCTGGAGCCCGGCCAGGTGAAGCTCGAGGTGGGCGAGCGCGAGCCCGAGCTGGAC
GCCGAGCTTGCCCAGCGGTTGCAGCTCGAGGAGATGCGCAAGGCCGAGGAAAAGGTCCCCGTCAA
GCTCGGGCCCACCGAGGACGAGGACGACGAGACGGTGGCCAACACCAAGGCCAACGCCATGCTCT
ACCACTTCACCGACGAGCTGGTGGACATGTATCGCCGCGAGAACACCCTGCTGGACCTCTTGGGC
CGCCTCTACTACGACGACTACGACCTGGACACCCCGGGCGCGCTCTCGGGCACCGCGACGCCGTT
GCTCTCGCCCACCCCGACCGGTGGCAACATGCTGGACCTGCTGCT
Right flanking sequence: Indices 90600 -- 91099
TGACGACGCCGCGGCCCGGGCTTCCCCGGCTCTACTCGCTCGAGCGGGGCGTGCTGTTCGACACC
AGCGACAACGACGCGCGCCGGCTGGTGATCTTCAAGGTCAAGCACCCGCAGTTCAAGTTCCGGCG
CAACAACAAGACGTTTTTGGCCGGGTTCAACCACCTGGCGGAGCTGTTGCGGGCCATCGAGTGGT
TGTTTGACGAGATGGTGGTGCACGGGGACACCATCGTGGTGCTCGAGGTGCTTGAGGAGCGGCGG
TACCAGGGGATCGACCGGGCAGCGGCGCAGAAGGCGTTGGCCACCATCGAGGGGCTCAACCGCAT
CCACAAAAAGAAGGTCAAGCTCATTTTCGAGACGGTGGTGGGCAAGCCCCAGCGGTTGCTCAAGA
CCGCCATCAACGAGTACAACCCGCAGATGATGGTGATGGGCACCAAGCACTACGACCGCAAGATC
CTGAAGCCGTTGTTTGCCAAGGAGCTGTTCTCGAAGCACTTTTTG
Found at i:91705 original size:39 final size:38
Alignment explanation
Indices: 91660--91809 Score: 144
Period size: 39 Copynumber: 3.9 Consensus size: 38
91650 GGAAGTAGAG
* * * *
91660 GAGAAGTAGAGTGGAGAAGTGAATTAGAGATGTAGAGTA
1 GAGAAGAAGAGTGGAGAAG-GAAGTAGAGAAGAAGAGTA
**
91699 GAGAAGTTG-G-GGAGAA-GAAGTAGAGTAGAGAAGAGTA
1 GAGAAGAAGAGTGGAGAAGGAAGTAGAG-A-AGAAGAGTA
*
91736 GAGAAGAAGAGTGGAGAAGAAGAGTAGAGAAGAAGAGTA
1 GAGAAGAAGAGTGGAGAAGGA-AGTAGAGAAGAAGAGTA
* **
91775 GAGAAGAAGAGTAGAGAAAAAGAGTAGAGAAGAAG
1 GAGAAGAAGAGTGGAGAAGGA-AGTAGAGAAGAAG
91810 GAGGGTGGAG
Statistics
Matches: 96, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
35 8 0.08
36 1 0.01
37 20 0.21
38 2 0.02
39 56 0.58
40 2 0.02
41 7 0.07
ACGTcount: A:0.48, C:0.00, G:0.40, T:0.12
Consensus pattern (38 bp):
GAGAAGAAGAGTGGAGAAGGAAGTAGAGAAGAAGAGTA
Left flanking sequence: Indices 91160 -- 91659
CAGCACCCGGTGGACGGGCCCGACTACTTTGAGCACTGGTTGCGCGACATCGACGTGCTGGGGCT
GTACGAGAAGAAGCGCAAGAAGGGGGTGTTCAGCCCCACGGTGCTGCGAGGGAACTCCTACACCA
ACTTGGCCCAGTTGACGCCCGACCGAGGCCGTCCCGCGGCTGCACGCGGCAACTCGTCCCAGAAC
TTGGCGGCGATGGTGACCGAGCGCATGGCGGAGCGGGGACGGCTGCCACAGCCGCCCGGGCTTGC
GGCTCGCACGCCTGAGCGCGGACGGTCGCCTGCTCCGCCGCCGGTGGCTGCCAACGTGCGGCCGC
TGCGGTCGCGGTCGCGGTCGCGGCAGCGGTTGCTGAAGATGTTTGGCATCGGCGAGTGATTATAG
AGTATAGAAATGACGAATAATGAAAAGGAAGAGGGGGAAGTAGGGGGAAAGGGGGAGAGAAGGTA
GGGGAGAGGAAGGGAATAGAGAAAATGTAGATTACGGAAGTAGAG
Right flanking sequence: Indices 91810 -- 92309
GAGGGTGGAGAACTAAAGTCGGGAAAAAGTAAATTGGAGTGGAAGAACGAAAAGTGGTGGGATGA
TTTCGTGGATTGGCTCATTGTGAGAAACGAAGACAGATTGGTGTAGAGGATGGAGAGTTTACATA
GGACTAACGGGATAAGCCTGAAGAAGTGAAGACCTAAATGGGTGCACAGCTCTAGTATAGAGGAC
TTAAGGGTGAACAATAGGGCAGTGGATTAGGCATGGTCACGAGTGAAAGTGGAACAACTGAATCG
ACGGAAGTGGGGTATGAACTGAAACGGTTAAGCGAAAAAAATGTGAGACACCGAAGCCAAGCAAC
TCACCGTAATTTGAGATTGACGTCAACGTAAACCCGAGCGTAAGAAAATAACTCAAATCCCGAAA
ACCACCGAGAAATTCCGGAGCGAAACACACGTGGCCACCCCGTTGACTATCGTACACGATACGAC
ACTGCCTGCTACTGCCTACCTGCTACTGCCTCCATCCCTACCCCC
Found at i:91743 original size:13 final size:13
Alignment explanation
Indices: 91711--91809 Score: 153
Period size: 13 Copynumber: 7.4 Consensus size: 13
91701 GAAGTTGGGG
91711 AGAAGAAGTAGAGTA
1 AGAAG-AGTAGAG-A
91726 GAGAAGAGTAGAGA
1 -AGAAGAGTAGAGA
*
91740 AGAAGAGTGGAGA
1 AGAAGAGTAGAGA
91753 AGAAGAGTAGAGA
1 AGAAGAGTAGAGA
91766 AGAAGAGTAGAGA
1 AGAAGAGTAGAGA
91779 AGAAGAGTAGAGA
1 AGAAGAGTAGAGA
*
91792 AAAAGAGTAGAGA
1 AGAAGAGTAGAGA
91805 AGAAG
1 AGAAG
91810 GAGGGTGGAG
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
13 66 0.84
14 1 0.01
15 7 0.09
16 5 0.06
ACGTcount: A:0.54, C:0.00, G:0.38, T:0.08
Consensus pattern (13 bp):
AGAAGAGTAGAGA
Left flanking sequence: Indices 91211 -- 91710
GACGTGCTGGGGCTGTACGAGAAGAAGCGCAAGAAGGGGGTGTTCAGCCCCACGGTGCTGCGAGG
GAACTCCTACACCAACTTGGCCCAGTTGACGCCCGACCGAGGCCGTCCCGCGGCTGCACGCGGCA
ACTCGTCCCAGAACTTGGCGGCGATGGTGACCGAGCGCATGGCGGAGCGGGGACGGCTGCCACAG
CCGCCCGGGCTTGCGGCTCGCACGCCTGAGCGCGGACGGTCGCCTGCTCCGCCGCCGGTGGCTGC
CAACGTGCGGCCGCTGCGGTCGCGGTCGCGGTCGCGGCAGCGGTTGCTGAAGATGTTTGGCATCG
GCGAGTGATTATAGAGTATAGAAATGACGAATAATGAAAAGGAAGAGGGGGAAGTAGGGGGAAAG
GGGGAGAGAAGGTAGGGGAGAGGAAGGGAATAGAGAAAATGTAGATTACGGAAGTAGAGGAGAAG
TAGAGTGGAGAAGTGAATTAGAGATGTAGAGTAGAGAAGTTGGGG
Right flanking sequence: Indices 91810 -- 92309
GAGGGTGGAGAACTAAAGTCGGGAAAAAGTAAATTGGAGTGGAAGAACGAAAAGTGGTGGGATGA
TTTCGTGGATTGGCTCATTGTGAGAAACGAAGACAGATTGGTGTAGAGGATGGAGAGTTTACATA
GGACTAACGGGATAAGCCTGAAGAAGTGAAGACCTAAATGGGTGCACAGCTCTAGTATAGAGGAC
TTAAGGGTGAACAATAGGGCAGTGGATTAGGCATGGTCACGAGTGAAAGTGGAACAACTGAATCG
ACGGAAGTGGGGTATGAACTGAAACGGTTAAGCGAAAAAAATGTGAGACACCGAAGCCAAGCAAC
TCACCGTAATTTGAGATTGACGTCAACGTAAACCCGAGCGTAAGAAAATAACTCAAATCCCGAAA
ACCACCGAGAAATTCCGGAGCGAAACACACGTGGCCACCCCGTTGACTATCGTACACGATACGAC
ACTGCCTGCTACTGCCTACCTGCTACTGCCTCCATCCCTACCCCC
Found at i:92288 original size:14 final size:14
Alignment explanation
Indices: 92269--92295 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92259 TACGACACTG
92269 CCTGCTACTGCCTA
1 CCTGCTACTGCCTA
92283 CCTGCTACTGCCT
1 CCTGCTACTGCCT
92296 CCATCCCTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.44, G:0.15, T:0.30
Consensus pattern (14 bp):
CCTGCTACTGCCTA
Left flanking sequence: Indices 91769 -- 92268
AGAGTAGAGAAGAAGAGTAGAGAAAAAGAGTAGAGAAGAAGGAGGGTGGAGAACTAAAGTCGGGA
AAAAGTAAATTGGAGTGGAAGAACGAAAAGTGGTGGGATGATTTCGTGGATTGGCTCATTGTGAG
AAACGAAGACAGATTGGTGTAGAGGATGGAGAGTTTACATAGGACTAACGGGATAAGCCTGAAGA
AGTGAAGACCTAAATGGGTGCACAGCTCTAGTATAGAGGACTTAAGGGTGAACAATAGGGCAGTG
GATTAGGCATGGTCACGAGTGAAAGTGGAACAACTGAATCGACGGAAGTGGGGTATGAACTGAAA
CGGTTAAGCGAAAAAAATGTGAGACACCGAAGCCAAGCAACTCACCGTAATTTGAGATTGACGTC
AACGTAAACCCGAGCGTAAGAAAATAACTCAAATCCCGAAAACCACCGAGAAATTCCGGAGCGAA
ACACACGTGGCCACCCCGTTGACTATCGTACACGATACGACACTG
Right flanking sequence: Indices 92296 -- 92795
CCATCCCTACCCCCACCGCTCTTCCCATTCGCCTCGTCAAAAGCAACCCAAAAAGAAATTTCGGT
AATAACGCGCAGCAAGGTCACACGTCGGACACCGCCAGCGACAGGTCACAACAGCGCTCGTCTGA
CCCGCCAACGGCAGCCACACCGCCCCGGGGGTTCGCTCGTGTGAGCACACCCCATTGTGGACCCG
CGGTCCCGAGTCTCCCGAACCCCTATTCGCCAGGGTGGCTAATGACAATTATCGCGCATAGAAAT
AACCTGTCAAAGGCACAGAACAAATCGGAGTGCGGACACCGGAGCAAGCACAATGTTCTCCGGGG
CGCTCAATTACCCACCTGTCACCACCCTCGCTTACCTCGCTTCGGCTACGCGAGGGTTCTCCAGG
GTCCGACCCGTCATTCTAGCCCCGCGATGAGATTTAAGCTATTTTTTTTTTCATGCATGATTGCA
TTGCGTTATCGAAAGAGTTACCGCATTCGTCGAGTCGATGGCTGT
Found at i:94489 original size:34 final size:34
Alignment explanation
Indices: 94427--94725 Score: 476
Period size: 34 Copynumber: 8.7 Consensus size: 34
94417 GCCCGAAGCG
* *
94427 GCCCAAAACGGCCATTACTATGCACTAATGCCTATA
1 GCCC-AAACGGCCA-TACCATACACTAATGCCTATA
*
94463 GCCCAAACAGCCATACCATACACTAATGCCTATA
1 GCCCAAACGGCCATACCATACACTAATGCCTATA
94497 GCCCAAACGGCCATACCATACACTAATGCCTATA
1 GCCCAAACGGCCATACCATACACTAATGCCTATA
*
94531 GCCCAAACGGCCATACCATACACTAATCCCTATA
1 GCCCAAACGGCCATACCATACACTAATGCCTATA
*
94565 GCCCAAACGGCCATACCATACACTAATACCTATA
1 GCCCAAACGGCCATACCATACACTAATGCCTATA
*
94599 GCCCAAACGGCCATACCATA-ATCTAATACCTATA
1 GCCCAAACGGCCATACCATACA-CTAATGCCTATA
* *
94633 GCCCAAACGGCCACACCATA-ATCTAATACCTATA
1 GCCCAAACGGCCATACCATACA-CTAATGCCTATA
94667 GCCCAAACGGCCATACCATACACTAATGCCTATA
1 GCCCAAACGGCCATACCATACACTAATGCCTATA
94701 GCCCAAACGGCCATACCATACACTA
1 GCCCAAACGGCCATACCATACACTA
94726 CCTATCTATG
Statistics
Matches: 252, Mismatches: 9, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
33 1 0.00
34 238 0.94
35 9 0.04
36 4 0.02
ACGTcount: A:0.36, C:0.35, G:0.10, T:0.18
Consensus pattern (34 bp):
GCCCAAACGGCCATACCATACACTAATGCCTATA
Left flanking sequence: Indices 93927 -- 94426
GTGCAAGTACTCGATGTACGCCCAGTACCCGCCAAACCCAAGCGCAGAAAGCCCCAATTGCTCGC
CAAACGACACCTGCCGCCGCGGATAGCACCCCATGACGTACACAAACGGGAACAAGTGGAACGAG
CAATCGTTGAGCAACAGCACCTGGTAGTCGTCGGTGTTCAACAGCCCGGCAGCAAAGGTGATGAA
GTACCAGTAGGCCACGGTGATCTCCAACTCTAACGACCCCACGAGGTAGTACAACCGCGTCAGCC
GGATCCCAAGGTTGTTAAGCACCGCATACACAAGCGAGAGAAACACCCCGCAATTGGTGAGAAAC
TGGAAGTTGCCCCCAGCAGCAAGGTGTGGGGGAAGCGGGAGCGCAAAAAAGCACTGGTACACGCC
CCACCCGGTCAGCAACAACCCAAACAAGTGCCACAAGTTCATGTTTTTCATTGGCTGGTGTGAGT
CCATTATGCACTAACTGTCACACCCTACATACGCGGCCCGAAGCG
Right flanking sequence: Indices 94726 -- 95225
CCTATCTATGCTTAACCAGATTCAACGCCACCTGGACGATGTGGCGGAACCGGGCACCCCCGAGC
GGGGTGCCTCCGTACCACCGGGTGACTATCACCATGGTGTTTACTAGGTTGTGGCGCAACACCAC
CCCCTCGAGAAGCCGGGAGCCCGCTCCCTTCTCGCCGTTGTCGTCGAACCCCTGGCGGTCTTGCG
ACCCCGTGGTACACCGCCACGCGATCATGTGGGGGTGCGAGGCCCGTTTCACCGCCCGGTTCTCG
TGCTGGAACCGCGCTAGGAGGGTGGGGATCTCGTCGGGCGAGGTGAGCGCCACGTGGAACCCCTG
GAACCGCGACTTGCGGTCGGTGACTATGCTCAGAGGAAACCAGTTGAGCGGCTTCATCTCTGTCT
ACCGGGTGCCCGAGTTCGTGTCCCGAGTTCGTGTCCCGAGTTCGTGTGCCTGAGTTCGTGTGCCC
GAGTTCGTTTCGCGTGGTGGGACGATGCTGCTGCACGGGTGCGCA
Found at i:95153 original size:26 final size:28
Alignment explanation
Indices: 95121--95188 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
95111 TGTCTACCGG
95121 GTGCCCGAGTTCGTGT-CCCGAGTTCGT
1 GTGCCCGAGTTCGTGTGCCCGAGTTCGT
*
95148 GT-CCCGAGTTCGTGTGCCTGAGTTCGT
1 GTGCCCGAGTTCGTGTGCCCGAGTTCGT
95175 GTGCCCGAGTTCGT
1 GTGCCCGAGTTCGT
95189 TTCGCGTGGT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 13 0.34
27 14 0.37
28 11 0.29
ACGTcount: A:0.07, C:0.28, G:0.34, T:0.31
Consensus pattern (28 bp):
GTGCCCGAGTTCGTGTGCCCGAGTTCGT
Left flanking sequence: Indices 94621 -- 95120
CTAATACCTATAGCCCAAACGGCCACACCATAATCTAATACCTATAGCCCAAACGGCCATACCAT
ACACTAATGCCTATAGCCCAAACGGCCATACCATACACTACCTATCTATGCTTAACCAGATTCAA
CGCCACCTGGACGATGTGGCGGAACCGGGCACCCCCGAGCGGGGTGCCTCCGTACCACCGGGTGA
CTATCACCATGGTGTTTACTAGGTTGTGGCGCAACACCACCCCCTCGAGAAGCCGGGAGCCCGCT
CCCTTCTCGCCGTTGTCGTCGAACCCCTGGCGGTCTTGCGACCCCGTGGTACACCGCCACGCGAT
CATGTGGGGGTGCGAGGCCCGTTTCACCGCCCGGTTCTCGTGCTGGAACCGCGCTAGGAGGGTGG
GGATCTCGTCGGGCGAGGTGAGCGCCACGTGGAACCCCTGGAACCGCGACTTGCGGTCGGTGACT
ATGCTCAGAGGAAACCAGTTGAGCGGCTTCATCTCTGTCTACCGG
Right flanking sequence: Indices 95189 -- 95688
TTCGCGTGGTGGGACGATGCTGCTGCACGGGTGCGCACATAAGAATTTTTCATTTCACCACGGAC
CCGGACTCGACCACCATGATCTACTTGAAGTCGCTCCTCAACGTGATTGACAATAGCGGTGCTCA
GATCGTGGAGTGTATCAAGGTGCTTCGCCACGGCCCCCGCAACTTTGCCAAGGTGGGTGACCAGA
TCACCGTGGTTGTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGACAGGCTGCTTCCAAC
CGGGTGAAGCGCCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCGCCGTTCAAGCGTCC
CGATGGGTCGGTGGTGCGGTTTGACGACAACGCGTGTGTGTTGATCAACAAGCTGGGCGACCCGC
TCGGGACCCGTGTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAACAAGATCGTC
GCGCTTGCCCCCAAGACGTTTTAGGCGTTGCTGTATATAGTCGGG
Found at i:95172 original size:14 final size:14
Alignment explanation
Indices: 95121--95188 Score: 113
Period size: 13 Copynumber: 5.0 Consensus size: 14
95111 TGTCTACCGG
95121 GTGCCCGAGTTCGT
1 GTGCCCGAGTTCGT
95135 GT-CCCGAGTTCGT
1 GTGCCCGAGTTCGT
95148 GT-CCCGAGTTCGT
1 GTGCCCGAGTTCGT
*
95161 GTGCCTGAGTTCGT
1 GTGCCCGAGTTCGT
95175 GTGCCCGAGTTCGT
1 GTGCCCGAGTTCGT
95189 TTCGCGTGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
13 26 0.51
14 25 0.49
ACGTcount: A:0.07, C:0.28, G:0.34, T:0.31
Consensus pattern (14 bp):
GTGCCCGAGTTCGT
Left flanking sequence: Indices 94621 -- 95120
CTAATACCTATAGCCCAAACGGCCACACCATAATCTAATACCTATAGCCCAAACGGCCATACCAT
ACACTAATGCCTATAGCCCAAACGGCCATACCATACACTACCTATCTATGCTTAACCAGATTCAA
CGCCACCTGGACGATGTGGCGGAACCGGGCACCCCCGAGCGGGGTGCCTCCGTACCACCGGGTGA
CTATCACCATGGTGTTTACTAGGTTGTGGCGCAACACCACCCCCTCGAGAAGCCGGGAGCCCGCT
CCCTTCTCGCCGTTGTCGTCGAACCCCTGGCGGTCTTGCGACCCCGTGGTACACCGCCACGCGAT
CATGTGGGGGTGCGAGGCCCGTTTCACCGCCCGGTTCTCGTGCTGGAACCGCGCTAGGAGGGTGG
GGATCTCGTCGGGCGAGGTGAGCGCCACGTGGAACCCCTGGAACCGCGACTTGCGGTCGGTGACT
ATGCTCAGAGGAAACCAGTTGAGCGGCTTCATCTCTGTCTACCGG
Right flanking sequence: Indices 95189 -- 95688
TTCGCGTGGTGGGACGATGCTGCTGCACGGGTGCGCACATAAGAATTTTTCATTTCACCACGGAC
CCGGACTCGACCACCATGATCTACTTGAAGTCGCTCCTCAACGTGATTGACAATAGCGGTGCTCA
GATCGTGGAGTGTATCAAGGTGCTTCGCCACGGCCCCCGCAACTTTGCCAAGGTGGGTGACCAGA
TCACCGTGGTTGTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGACAGGCTGCTTCCAAC
CGGGTGAAGCGCCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCGCCGTTCAAGCGTCC
CGATGGGTCGGTGGTGCGGTTTGACGACAACGCGTGTGTGTTGATCAACAAGCTGGGCGACCCGC
TCGGGACCCGTGTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAACAAGATCGTC
GCGCTTGCCCCCAAGACGTTTTAGGCGTTGCTGTATATAGTCGGG
Found at i:95822 original size:8 final size:8
Alignment explanation
Indices: 95809--95856 Score: 53
Period size: 8 Copynumber: 6.1 Consensus size: 8
95799 GTTGGCTAGA
95809 TGGTTGAC
1 TGGTTGAC
*
95817 TAGTTGAC
1 TGGTTGAC
* *
95825 T-TTTAAC
1 TGGTTGAC
95832 TGGTTGAC
1 TGGTTGAC
*
95840 TGGTTGAT
1 TGGTTGAC
95848 TGGTTGAC
1 TGGTTGAC
95856 T
1 T
95857 AGATGGTTGA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
7 5 0.16
8 27 0.84
ACGTcount: A:0.17, C:0.10, G:0.29, T:0.44
Consensus pattern (8 bp):
TGGTTGAC
Left flanking sequence: Indices 95309 -- 95808
GCGGTGCTCAGATCGTGGAGTGTATCAAGGTGCTTCGCCACGGCCCCCGCAACTTTGCCAAGGTG
GGTGACCAGATCACCGTGGTTGTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGACAGGC
TGCTTCCAACCGGGTGAAGCGCCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCGCCGT
TCAAGCGTCCCGATGGGTCGGTGGTGCGGTTTGACGACAACGCGTGTGTGTTGATCAACAAGCTG
GGCGACCCGCTCGGGACCCGTGTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAA
CAAGATCGTCGCGCTTGCCCCCAAGACGTTTTAGGCGTTGCTGTATATAGTCGGGCACTAGCATT
GTATATTAGAATGGATCGTTTGCATAAAGGGGTTGGTGGATTGAGTGTGGAATGGTTAGGCGAGT
AGGTTGACAGGTAGTTTGATTGTGTTTGCTGGCTGGTTGGCTAGA
Right flanking sequence: Indices 95857 -- 96356
AGATGGTTGACTAGATGGTGGTTGAATAGATCTTGACTAGATGGTTAGCTAGACAGATGGTTTGC
TAGATGGTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGATAGTTGACTGTTTGCCTAGAT
GGTGACCAGACGGTTGACCGTATGGTTTGCCGTATGGCTGTCTACACAGGTTGGTTGACAGGTCA
TGTGACAAGTGCTTGGCCATGTGACTAGCTTAGAGACCAGGCGTCTACGATTCTTGTACTAGAGT
ATATTAGGTAAGTTTACTAACTCCTTTGGCTGGCTTCACGTAGTTAGGTTGGGTAGAAAATACTA
TATTTTGAACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTGACAATACTGCTTCAGAATGC
GTCAGATGGCATTGGCACAGCTCAGTGCATCATTCATATGCTTTTGCTGGCTGTGCTATTCGTCT
GGCTGTGTATTCGTCTGGCTGTGCTATTCATCTGGTTGTAATATT
Found at i:95865 original size:12 final size:12
Alignment explanation
Indices: 95848--95902 Score: 58
Period size: 12 Copynumber: 4.4 Consensus size: 12
95838 ACTGGTTGAT
95848 TGGTTGACTAGA
1 TGGTTGACTAGA
95860 TGGTTGACTAGA
1 TGGTTGACTAGA
*
95872 TGGTGGTTGAATAGA
1 ---TGGTTGACTAGA
*
95887 T-CTTGACTAGA
1 TGGTTGACTAGA
95898 TGGTT
1 TGGTT
95903 AGCTAGACAG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 9 0.26
12 15 0.43
15 11 0.31
ACGTcount: A:0.24, C:0.07, G:0.33, T:0.36
Consensus pattern (12 bp):
TGGTTGACTAGA
Left flanking sequence: Indices 95348 -- 95847
ACGGCCCCCGCAACTTTGCCAAGGTGGGTGACCAGATCACCGTGGTTGTCAAAAAGGCCAAGCCG
TTGCTGAGTGAAATCACCGGACAGGCTGCTTCCAACCGGGTGAAGCGCCGGGACATCTGCCGGGC
GATCGTTGTGCGGACCAAGGCGCCGTTCAAGCGTCCCGATGGGTCGGTGGTGCGGTTTGACGACA
ACGCGTGTGTGTTGATCAACAAGCTGGGCGACCCGCTCGGGACCCGTGTGGGTGGGGTGGTTGCC
AAGGAGTTGCGCGAGTTGGAGTACAACAAGATCGTCGCGCTTGCCCCCAAGACGTTTTAGGCGTT
GCTGTATATAGTCGGGCACTAGCATTGTATATTAGAATGGATCGTTTGCATAAAGGGGTTGGTGG
ATTGAGTGTGGAATGGTTAGGCGAGTAGGTTGACAGGTAGTTTGATTGTGTTTGCTGGCTGGTTG
GCTAGATGGTTGACTAGTTGACTTTTAACTGGTTGACTGGTTGAT
Right flanking sequence: Indices 95903 -- 96402
AGCTAGACAGATGGTTTGCTAGATGGTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGATA
GTTGACTGTTTGCCTAGATGGTGACCAGACGGTTGACCGTATGGTTTGCCGTATGGCTGTCTACA
CAGGTTGGTTGACAGGTCATGTGACAAGTGCTTGGCCATGTGACTAGCTTAGAGACCAGGCGTCT
ACGATTCTTGTACTAGAGTATATTAGGTAAGTTTACTAACTCCTTTGGCTGGCTTCACGTAGTTA
GGTTGGGTAGAAAATACTATATTTTGAACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTGA
CAATACTGCTTCAGAATGCGTCAGATGGCATTGGCACAGCTCAGTGCATCATTCATATGCTTTTG
CTGGCTGTGCTATTCGTCTGGCTGTGTATTCGTCTGGCTGTGCTATTCATCTGGTTGTAATATTC
GTCTAACAGTGCCATTCGTCTGGCTGTGCTATTCGTCTAATTGTT
Found at i:95899 original size:26 final size:27
Alignment explanation
Indices: 95848--95901 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
95838 ACTGGTTGAT
* *
95848 TGGTTGACTAGATGGTTGACTAGATGG
1 TGGTTGAATAGATGCTTGACTAGATGG
95875 TGGTTGAATAGAT-CTTGACTAGATGG
1 TGGTTGAATAGATGCTTGACTAGATGG
95901 T
1 T
95902 TAGCTAGACA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.24, C:0.07, G:0.33, T:0.35
Consensus pattern (27 bp):
TGGTTGAATAGATGCTTGACTAGATGG
Left flanking sequence: Indices 95348 -- 95847
ACGGCCCCCGCAACTTTGCCAAGGTGGGTGACCAGATCACCGTGGTTGTCAAAAAGGCCAAGCCG
TTGCTGAGTGAAATCACCGGACAGGCTGCTTCCAACCGGGTGAAGCGCCGGGACATCTGCCGGGC
GATCGTTGTGCGGACCAAGGCGCCGTTCAAGCGTCCCGATGGGTCGGTGGTGCGGTTTGACGACA
ACGCGTGTGTGTTGATCAACAAGCTGGGCGACCCGCTCGGGACCCGTGTGGGTGGGGTGGTTGCC
AAGGAGTTGCGCGAGTTGGAGTACAACAAGATCGTCGCGCTTGCCCCCAAGACGTTTTAGGCGTT
GCTGTATATAGTCGGGCACTAGCATTGTATATTAGAATGGATCGTTTGCATAAAGGGGTTGGTGG
ATTGAGTGTGGAATGGTTAGGCGAGTAGGTTGACAGGTAGTTTGATTGTGTTTGCTGGCTGGTTG
GCTAGATGGTTGACTAGTTGACTTTTAACTGGTTGACTGGTTGAT
Right flanking sequence: Indices 95902 -- 96401
TAGCTAGACAGATGGTTTGCTAGATGGTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGAT
AGTTGACTGTTTGCCTAGATGGTGACCAGACGGTTGACCGTATGGTTTGCCGTATGGCTGTCTAC
ACAGGTTGGTTGACAGGTCATGTGACAAGTGCTTGGCCATGTGACTAGCTTAGAGACCAGGCGTC
TACGATTCTTGTACTAGAGTATATTAGGTAAGTTTACTAACTCCTTTGGCTGGCTTCACGTAGTT
AGGTTGGGTAGAAAATACTATATTTTGAACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTG
ACAATACTGCTTCAGAATGCGTCAGATGGCATTGGCACAGCTCAGTGCATCATTCATATGCTTTT
GCTGGCTGTGCTATTCGTCTGGCTGTGTATTCGTCTGGCTGTGCTATTCATCTGGTTGTAATATT
CGTCTAACAGTGCCATTCGTCTGGCTGTGCTATTCGTCTAATTGT
Found at i:95916 original size:16 final size:16
Alignment explanation
Indices: 95895--95925 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95885 GATCTTGACT
95895 AGATGGTTAGCTAGAC
1 AGATGGTTAGCTAGAC
*
95911 AGATGGTTTGCTAGA
1 AGATGGTTAGCTAGA
95926 TGGTCAACCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29
Consensus pattern (16 bp):
AGATGGTTAGCTAGAC
Left flanking sequence: Indices 95395 -- 95894
GTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGACAGGCTGCTTCCAACCGGGTGAAGCG
CCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCGCCGTTCAAGCGTCCCGATGGGTCGG
TGGTGCGGTTTGACGACAACGCGTGTGTGTTGATCAACAAGCTGGGCGACCCGCTCGGGACCCGT
GTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAACAAGATCGTCGCGCTTGCCCC
CAAGACGTTTTAGGCGTTGCTGTATATAGTCGGGCACTAGCATTGTATATTAGAATGGATCGTTT
GCATAAAGGGGTTGGTGGATTGAGTGTGGAATGGTTAGGCGAGTAGGTTGACAGGTAGTTTGATT
GTGTTTGCTGGCTGGTTGGCTAGATGGTTGACTAGTTGACTTTTAACTGGTTGACTGGTTGATTG
GTTGACTAGATGGTTGACTAGATGGTGGTTGAATAGATCTTGACT
Right flanking sequence: Indices 95926 -- 96425
TGGTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGATAGTTGACTGTTTGCCTAGATGGTG
ACCAGACGGTTGACCGTATGGTTTGCCGTATGGCTGTCTACACAGGTTGGTTGACAGGTCATGTG
ACAAGTGCTTGGCCATGTGACTAGCTTAGAGACCAGGCGTCTACGATTCTTGTACTAGAGTATAT
TAGGTAAGTTTACTAACTCCTTTGGCTGGCTTCACGTAGTTAGGTTGGGTAGAAAATACTATATT
TTGAACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTGACAATACTGCTTCAGAATGCGTCA
GATGGCATTGGCACAGCTCAGTGCATCATTCATATGCTTTTGCTGGCTGTGCTATTCGTCTGGCT
GTGTATTCGTCTGGCTGTGCTATTCATCTGGTTGTAATATTCGTCTAACAGTGCCATTCGTCTGG
CTGTGCTATTCGTCTAATTGTTCTATTCAGTTGGTGTGCCTGGAC
Found at i:96315 original size:17 final size:17
Alignment explanation
Indices: 96293--96395 Score: 127
Period size: 17 Copynumber: 6.1 Consensus size: 17
96283 TATGCTTTTG
96293 CTGGCTGTGCTATTCGT
1 CTGGCTGTGCTATTCGT
96310 CTGGCTGTG-TATTCGT
1 CTGGCTGTGCTATTCGT
*
96326 CTGGCTGTGCTATTCAT
1 CTGGCTGTGCTATTCGT
* **
96343 CTGGTTGTAATATTCGT
1 CTGGCTGTGCTATTCGT
** * *
96360 CTAACAGTGCCATTCGT
1 CTGGCTGTGCTATTCGT
96377 CTGGCTGTGCTATTCGT
1 CTGGCTGTGCTATTCGT
96394 CT
1 CT
96396 AATTGTTCTA
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
16 16 0.23
17 53 0.77
ACGTcount: A:0.12, C:0.22, G:0.25, T:0.41
Consensus pattern (17 bp):
CTGGCTGTGCTATTCGT
Left flanking sequence: Indices 95793 -- 96292
TGGCTGGTTGGCTAGATGGTTGACTAGTTGACTTTTAACTGGTTGACTGGTTGATTGGTTGACTA
GATGGTTGACTAGATGGTGGTTGAATAGATCTTGACTAGATGGTTAGCTAGACAGATGGTTTGCT
AGATGGTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGATAGTTGACTGTTTGCCTAGATG
GTGACCAGACGGTTGACCGTATGGTTTGCCGTATGGCTGTCTACACAGGTTGGTTGACAGGTCAT
GTGACAAGTGCTTGGCCATGTGACTAGCTTAGAGACCAGGCGTCTACGATTCTTGTACTAGAGTA
TATTAGGTAAGTTTACTAACTCCTTTGGCTGGCTTCACGTAGTTAGGTTGGGTAGAAAATACTAT
ATTTTGAACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTGACAATACTGCTTCAGAATGCG
TCAGATGGCATTGGCACAGCTCAGTGCATCATTCATATGCTTTTG
Right flanking sequence: Indices 96396 -- 96895
AATTGTTCTATTCAGTTGGTGTGCCTGGACACCCAAAACATAAGTGCCCGCTAATATCACCTAAT
GTCCATCAAAGGCTGCGCCAAAAGACAACCCCTGTAGATGCAACTCTGGTCCCCTAACTACACTA
CACCTGATGCACCTTGTCCCAAGGGGTCGCCCTAACTACACCTTACACCCGATGCAACCTGGACC
AACTACCATGGCTCGATATCTTTGCGTTGACGACTTTAATGCGTATTATTAGTGTGTTCGGATGC
AAAGCATTGTGACCCAACTCTAATTCGATTGCTCCAAAGAACACCCTGTGGCCACAGCGATACTC
GAGCTCGCTTAGTCGACCGTCGATCATGCACCACCACCAAAAGTGTTTTCTCACCTCGCAAGGTC
GCTATAGTCGCTAAAACCACCCGGGAAAACGCACCCGACACCAGGCGCGGCCCGACACGCCCGTC
TCGTCGTCCGACTCTGCTCGTCCGACGTCTTCACCTTACACGACT
Found at i:98392 original size:11 final size:11
Alignment explanation
Indices: 98376--98407 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
98366 GCTAGGGGTG
98376 GGTGCACGGTT
1 GGTGCACGGTT
98387 GGTGCACGGTT
1 GGTGCACGGTT
98398 GGTGCACGGT
1 GGTGCACGGT
98408 CATGGGGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.19, G:0.47, T:0.25
Consensus pattern (11 bp):
GGTGCACGGTT
Left flanking sequence: Indices 97876 -- 98375
TGCATACCCCCAGCTCCACGCATCATGCAAAGGGGTCCCGGTTGAGGCAAGTGAATGCGGATTAG
ACTTTGGGCGAACAATCAGATTTTTTTGAAATAGAAGCAAGGATCATCTTCTTTGTGAAACTTCG
TGGTTATTTTCTCGGTGCTACAGCCGCTGTGCGTGACTAGTGGGGGGTGATATTGCCGAGCAACG
CCAGGATGCGGCCGCTCAGCTCGGTGGTGGTGGTGGGGGAGCTTCGGGTGGGGTCCGCACATAAT
CACCCAAGGCCCGCCAATTATTATTGCCGGGGAGCGACGCACCTCAGGAATGTGGTCGCTGCCAG
GGCAAGTGGATCCTCCAACATTCCCGGACGCATGCCCAATGGGGAAGCCGAGGGGGAATGCCGAC
ACCGTTTGCTCGGGCTACCCCACGCCACATCAAGCAACCTCGGGGCACCGCTCGGCCGAGTGCTG
GTTTCGTGCAGTCGCAGCAGCTTTGCAGCGGCCACGCTAGGGGTG
Right flanking sequence: Indices 98408 -- 98907
CATGGGGGCAACAGGAACAGCGTGTCTGAGGTGCGCTTCGCAAGGCTACCGAGCCCAGGGCATTA
CGTAAGTGTAATTAGGGAATGTGGGTAGGGTAAGTGGGGTGTAGGGTAGGTGTAGGGTTGAATGA
GACGTTTGGGTGGATGTTGGTGAATGTCTGGGATAAGGTTTGAGGGAATGTTTGGGTGTCTCAGA
GTACTGCGTCGGATGGTCAATGGTTGAAAAGACGTGAAAAATGTACAGGTCGGTGGAGTAGCGAC
CAGAGAGACTAACCAGCTGACAATGCCCCCCAGAACCAGTCGACTGACCCGCCCCCGGGGTGGCC
ACGCTGTGTGCGTATTTATAGAACCTCGTCTAAACTATGAGACAGGTCACACCGAAGAGCACGTA
AATACGACCGCCTCAATGGTACCCCCATTGCTCGATACGAGTAACACTGGAACGGCGTGAGCGTT
GTGCTCGTCTAATGGGTCCAGCGAAAAGGAGATGAATGGTGCTTA
Found at i:101073 original size:21 final size:21
Alignment explanation
Indices: 101045--101119 Score: 107
Period size: 21 Copynumber: 3.6 Consensus size: 21
101035 CATCGATGTC
*
101045 ACAGCCAGAGACACAACCACA
1 ACAGCCAGAGACACAACCAGA
* *
101066 ACAACCAGAAACACAACCAGA
1 ACAGCCAGAGACACAACCAGA
101087 ACAGCCAGAGATC-CAACCAGA
1 ACAGCCAGAGA-CACAACCAGA
101108 ACAGCCAGAGAC
1 ACAGCCAGAGAC
101120 TGTCAATTCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
20 1 0.02
21 46 0.96
22 1 0.02
ACGTcount: A:0.48, C:0.35, G:0.16, T:0.01
Consensus pattern (21 bp):
ACAGCCAGAGACACAACCAGA
Left flanking sequence: Indices 100545 -- 101044
GGAGCAACTTGACGTTGGCGGAGTGCTCGGGGTCGATGTAGGTGGCCCGTGCGTAGAGATCGTAC
ACGGTCTCGCTGTAGCCCACGAGACACCCGAGCACGAGGAACACCGCGGTGGCTTTCCACGGGAT
CCATGGTTTGGGGCCCCTGTCGGGGAGATGGTCGAATGGCGAGTCGTTCATGCCACGGGTGGCGT
AGCCACGCGAGCGGGGGGTTCGCAGGGGGCCCAGCGGGCGTTTGAGGGGCAGACCGGGCGTCAAG
ACCCGCCGGAACCCGGGGAAAAGCCGTGCGGAGTGGAGCATGGGGTGGTGGAGATGATCCCGTTG
CGGCTTTGGTACAGGAACGCGAGCGAAACAGTATGGAGCCCATGGACGTGGACGAGACGCGGGCA
ATTGGGACCGAGCCAGCGAGAGAAGCGGAGGCTGGGGTTGCTAGAGAGGCGATGCTGAGTGAAGT
AACGTCAGCGACGCAGCCTGAGGCTCTGATAGAGGCATCGATGTC
Right flanking sequence: Indices 101120 -- 101619
TGTCAATTCCACCAACCAACCACCTGTTTCAGCTGCTTCTGAACCCGTTACCGACGCTGCTCCCG
TCACCGACGCTACTGCTCCTGTTACCGACGCTACTGCTCCTGTTTCAGATGCTACTGCTCCTGTT
TCAGACTCCTCCACTCATCCTGTTTCAGACTCCTCTGCTCTTGTTACAGACTCCTCCCGCGCTGA
AACCTCCCATCCCGTTTCAGACGCCTCCGCGCCTCCGGCAGCTGAAACCTCCTCCACTCCCGCCG
TCTCCACCAAGGACACCACGGTGTTGGTGTCTGCGGACTCGGCTCAGCCCGCCGACACCCCCACG
GACACCCCTCGCGCCACCCCGAAGCCCGAGGCCACGCCGCCCGCCGAGTCCAAGCACTCGTACGG
CACCCGGCTGAAGGACCGCTCCAAGGAGGAGGAGGCCCGCCAGCGACTGCTTGCCAAGCAGAAAG
CAGCCAACGTGGTGGTCAAACCGCGGCTCAAACCGGTCGCCTACG
Found at i:101225 original size:21 final size:21
Alignment explanation
Indices: 101176--101249 Score: 103
Period size: 21 Copynumber: 3.5 Consensus size: 21
101166 GTTACCGACG
* *
101176 CTGCTCCCGTCACCGACGCTA
1 CTGCTCCTGTTACCGACGCTA
101197 CTGCTCCTGTTACCGACGCTA
1 CTGCTCCTGTTACCGACGCTA
* * *
101218 CTGCTCCTGTTTCAGATGCTA
1 CTGCTCCTGTTACCGACGCTA
101239 CTGCTCCTGTT
1 CTGCTCCTGTT
101250 TCAGACTCCT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.12, C:0.38, G:0.19, T:0.31
Consensus pattern (21 bp):
CTGCTCCTGTTACCGACGCTA
Left flanking sequence: Indices 100676 -- 101175
CATGGTTTGGGGCCCCTGTCGGGGAGATGGTCGAATGGCGAGTCGTTCATGCCACGGGTGGCGTA
GCCACGCGAGCGGGGGGTTCGCAGGGGGCCCAGCGGGCGTTTGAGGGGCAGACCGGGCGTCAAGA
CCCGCCGGAACCCGGGGAAAAGCCGTGCGGAGTGGAGCATGGGGTGGTGGAGATGATCCCGTTGC
GGCTTTGGTACAGGAACGCGAGCGAAACAGTATGGAGCCCATGGACGTGGACGAGACGCGGGCAA
TTGGGACCGAGCCAGCGAGAGAAGCGGAGGCTGGGGTTGCTAGAGAGGCGATGCTGAGTGAAGTA
ACGTCAGCGACGCAGCCTGAGGCTCTGATAGAGGCATCGATGTCACAGCCAGAGACACAACCACA
ACAACCAGAAACACAACCAGAACAGCCAGAGATCCAACCAGAACAGCCAGAGACTGTCAATTCCA
CCAACCAACCACCTGTTTCAGCTGCTTCTGAACCCGTTACCGACG
Right flanking sequence: Indices 101250 -- 101749
TCAGACTCCTCCACTCATCCTGTTTCAGACTCCTCTGCTCTTGTTACAGACTCCTCCCGCGCTGA
AACCTCCCATCCCGTTTCAGACGCCTCCGCGCCTCCGGCAGCTGAAACCTCCTCCACTCCCGCCG
TCTCCACCAAGGACACCACGGTGTTGGTGTCTGCGGACTCGGCTCAGCCCGCCGACACCCCCACG
GACACCCCTCGCGCCACCCCGAAGCCCGAGGCCACGCCGCCCGCCGAGTCCAAGCACTCGTACGG
CACCCGGCTGAAGGACCGCTCCAAGGAGGAGGAGGCCCGCCAGCGACTGCTTGCCAAGCAGAAAG
CAGCCAACGTGGTGGTCAAACCGCGGCTCAAACCGGTCGCCTACGCCGCCAGCGACGCCCCCACC
GCCCACGACGGGCGCACCGCCGCGCTGGCCGTCGCCGACACCCAGTTCTACGTGACGGACGACTC
GGTGCCCTTGAACAAACGCGGGTTCAAGTACAAGCCGTGTGCGCC
Found at i:101250 original size:21 final size:21
Alignment explanation
Indices: 101190--101255 Score: 105
Period size: 21 Copynumber: 3.1 Consensus size: 21
101180 TCCCGTCACC
* *
101190 GACGCTACTGCTCCTGTTACC
1 GACGCTACTGCTCCTGTTTCA
101211 GACGCTACTGCTCCTGTTTCA
1 GACGCTACTGCTCCTGTTTCA
*
101232 GATGCTACTGCTCCTGTTTCA
1 GACGCTACTGCTCCTGTTTCA
101253 GAC
1 GAC
101256 TCCTCCACTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.15, C:0.33, G:0.20, T:0.32
Consensus pattern (21 bp):
GACGCTACTGCTCCTGTTTCA
Left flanking sequence: Indices 100690 -- 101189
CCTGTCGGGGAGATGGTCGAATGGCGAGTCGTTCATGCCACGGGTGGCGTAGCCACGCGAGCGGG
GGGTTCGCAGGGGGCCCAGCGGGCGTTTGAGGGGCAGACCGGGCGTCAAGACCCGCCGGAACCCG
GGGAAAAGCCGTGCGGAGTGGAGCATGGGGTGGTGGAGATGATCCCGTTGCGGCTTTGGTACAGG
AACGCGAGCGAAACAGTATGGAGCCCATGGACGTGGACGAGACGCGGGCAATTGGGACCGAGCCA
GCGAGAGAAGCGGAGGCTGGGGTTGCTAGAGAGGCGATGCTGAGTGAAGTAACGTCAGCGACGCA
GCCTGAGGCTCTGATAGAGGCATCGATGTCACAGCCAGAGACACAACCACAACAACCAGAAACAC
AACCAGAACAGCCAGAGATCCAACCAGAACAGCCAGAGACTGTCAATTCCACCAACCAACCACCT
GTTTCAGCTGCTTCTGAACCCGTTACCGACGCTGCTCCCGTCACC
Right flanking sequence: Indices 101256 -- 101755
TCCTCCACTCATCCTGTTTCAGACTCCTCTGCTCTTGTTACAGACTCCTCCCGCGCTGAAACCTC
CCATCCCGTTTCAGACGCCTCCGCGCCTCCGGCAGCTGAAACCTCCTCCACTCCCGCCGTCTCCA
CCAAGGACACCACGGTGTTGGTGTCTGCGGACTCGGCTCAGCCCGCCGACACCCCCACGGACACC
CCTCGCGCCACCCCGAAGCCCGAGGCCACGCCGCCCGCCGAGTCCAAGCACTCGTACGGCACCCG
GCTGAAGGACCGCTCCAAGGAGGAGGAGGCCCGCCAGCGACTGCTTGCCAAGCAGAAAGCAGCCA
ACGTGGTGGTCAAACCGCGGCTCAAACCGGTCGCCTACGCCGCCAGCGACGCCCCCACCGCCCAC
GACGGGCGCACCGCCGCGCTGGCCGTCGCCGACACCCAGTTCTACGTGACGGACGACTCGGTGCC
CTTGAACAAACGCGGGTTCAAGTACAAGCCGTGTGCGCCCCAGCC
Found at i:101294 original size:21 final size:21
Alignment explanation
Indices: 101218--101305 Score: 90
Period size: 21 Copynumber: 4.0 Consensus size: 21
101208 ACCGACGCTA
*
101218 CTGCTCCTGTTTCAGA-TGCT
1 CTGCTCCTGTTTCAGACTCCT
101238 ACTGCTCCTGTTTCAGACTCCT
1 -CTGCTCCTGTTTCAGACTCCT
101260 CCACT-CATCCTGTTTCAGACTCCT
1 ---CTGC-TCCTGTTTCAGACTCCT
* *
101284 CTGCTCTTGTTACAGACTCCT
1 CTGCTCCTGTTTCAGACTCCT
101305 C
1 C
101306 CCGCGCTGAA
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
21 34 0.58
22 4 0.07
23 1 0.02
24 20 0.34
ACGTcount: A:0.14, C:0.36, G:0.14, T:0.36
Consensus pattern (21 bp):
CTGCTCCTGTTTCAGACTCCT
Left flanking sequence: Indices 100718 -- 101217
TCGTTCATGCCACGGGTGGCGTAGCCACGCGAGCGGGGGGTTCGCAGGGGGCCCAGCGGGCGTTT
GAGGGGCAGACCGGGCGTCAAGACCCGCCGGAACCCGGGGAAAAGCCGTGCGGAGTGGAGCATGG
GGTGGTGGAGATGATCCCGTTGCGGCTTTGGTACAGGAACGCGAGCGAAACAGTATGGAGCCCAT
GGACGTGGACGAGACGCGGGCAATTGGGACCGAGCCAGCGAGAGAAGCGGAGGCTGGGGTTGCTA
GAGAGGCGATGCTGAGTGAAGTAACGTCAGCGACGCAGCCTGAGGCTCTGATAGAGGCATCGATG
TCACAGCCAGAGACACAACCACAACAACCAGAAACACAACCAGAACAGCCAGAGATCCAACCAGA
ACAGCCAGAGACTGTCAATTCCACCAACCAACCACCTGTTTCAGCTGCTTCTGAACCCGTTACCG
ACGCTGCTCCCGTCACCGACGCTACTGCTCCTGTTACCGACGCTA
Right flanking sequence: Indices 101306 -- 101805
CCGCGCTGAAACCTCCCATCCCGTTTCAGACGCCTCCGCGCCTCCGGCAGCTGAAACCTCCTCCA
CTCCCGCCGTCTCCACCAAGGACACCACGGTGTTGGTGTCTGCGGACTCGGCTCAGCCCGCCGAC
ACCCCCACGGACACCCCTCGCGCCACCCCGAAGCCCGAGGCCACGCCGCCCGCCGAGTCCAAGCA
CTCGTACGGCACCCGGCTGAAGGACCGCTCCAAGGAGGAGGAGGCCCGCCAGCGACTGCTTGCCA
AGCAGAAAGCAGCCAACGTGGTGGTCAAACCGCGGCTCAAACCGGTCGCCTACGCCGCCAGCGAC
GCCCCCACCGCCCACGACGGGCGCACCGCCGCGCTGGCCGTCGCCGACACCCAGTTCTACGTGAC
GGACGACTCGGTGCCCTTGAACAAACGCGGGTTCAAGTACAAGCCGTGTGCGCCCCAGCCGCAGT
TCCCCGCCAACTTGTACGCCACCACCGACACCGCTCCCTACGGGG
Found at i:102852 original size:9 final size:9
Alignment explanation
Indices: 102831--102935 Score: 108
Period size: 9 Copynumber: 11.7 Consensus size: 9
102821 GAAGGAGGGG
102831 GATGAA-GT
1 GATGAAGGT
102839 GGATGAAGGT
1 -GATGAAGGT
*
102849 GATGACGGT
1 GATGAAGGT
*
102858 GATGACGGT
1 GATGAAGGT
*
102867 GATGACGGT
1 GATGAAGGT
*
102876 GATGACGGT
1 GATGAAGGT
*
102885 GATGACGGT
1 GATGAAGGT
*
102894 GATGACGGT
1 GATGAAGGT
102903 GATG-AGGAT
1 GATGAAGG-T
102912 GATGAAGGT
1 GATGAAGGT
102921 GGAT-AAGGT
1 -GATGAAGGT
102930 GATGAA
1 GATGAA
102936 TGAAAAAGAT
Statistics
Matches: 89, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
8 5 0.06
9 76 0.85
10 8 0.09
ACGTcount: A:0.29, C:0.06, G:0.44, T:0.22
Consensus pattern (9 bp):
GATGAAGGT
Left flanking sequence: Indices 102331 -- 102830
ACTTCGAGCAGTACGAGTACACGCCCACCAAGGCGATGGAGCACTTGCTCAACCCGGTGCTGATG
GTGGGCGAGCGCGCGGTGGTGGAGAACGAGACCAACAACCGGTTGCTGGAGAACTTGCCGCGGAT
TCCCCGGTCGCGGGTCCGGTTCTTCAAGAACGGGGTGGAGCTGGCGCAGCGGCTCGAGGAGCTCT
ACCTGTTTTTGCCCACCGAGGTGAGCACCGCCAACGTCGGGTACAACACTGCCCAGGCGCAGAAC
CCCGACTACCGCCAGACCGACGACGGGTCGCTTGGGTACTACCCGATGGTGTCGTGTTTCCAGGG
GGCGGTGGTGGAGTTGAACGCCGGGCCCGAGTTCCGGTACCCCGTGGGGGACGAGGCGCGGCCGT
TGTGCGAGCGGTTTGACGAGCTGGTGGTGGAGCTGTGGTACTGGGACCTCGTGGACGAGGTGGAG
GCCGAGTACTTGGATAGTTTTGAGTGAGGGAAGAAGAAGGAGGGG
Right flanking sequence: Indices 102936 -- 103435
TGAAAAAGATTAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAGAGACTGAGAA
GACTGAGAAGACTGAGAAAGACCGAGAAAGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATACA
AAGTCTCGATACCTAATGAAAGAGCCATAACTCTCAATCAATCTGGTTAATGTTTCATCTACTGT
CCTGCTCACCAAACCATTTACTTCCGAATACTGCCTCTAATAATGTATTATAATGCTATACATAA
TGTGATAGGAGTAGACAACCGGGAAGACTGAACGAGGCAAAGACTTAACGAGCTACTAAGCTAAA
CAGCTACACAATCAAACAGCCACATAAGCTAACAGCTACACAAGTCACAAGCTGCAAGCTATATT
CCACCCTTGTGCTGCTCGTCTCTCACCAGTCTCCGTACTGGCCACCTCTACAATCCTTCAATCCT
CTCAGTCATTCTCCACCACCTCTCAGTCATCCTTTAATCACCCTC
Found at i:102861 original size:18 final size:18
Alignment explanation
Indices: 102840--102935 Score: 124
Period size: 18 Copynumber: 5.3 Consensus size: 18
102830 GGATGAAGTG
102840 GATGAAGGTGATGACGGT
1 GATGAAGGTGATGACGGT
*
102858 GATGACGGTGATGACGGT
1 GATGAAGGTGATGACGGT
*
102876 GATGACGGTGATGACGGT
1 GATGAAGGTGATGACGGT
*
102894 GATGACGGTGATGA-GGAT
1 GATGAAGGTGATGACGG-T
*
102912 GATGAAGGTGGAT-AAGGT
1 GATGAAGGT-GATGACGGT
102930 GATGAA
1 GATGAA
102936 TGAAAAAGAT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 2 0.03
18 66 0.90
19 5 0.07
ACGTcount: A:0.28, C:0.06, G:0.44, T:0.22
Consensus pattern (18 bp):
GATGAAGGTGATGACGGT
Left flanking sequence: Indices 102340 -- 102839
AGTACGAGTACACGCCCACCAAGGCGATGGAGCACTTGCTCAACCCGGTGCTGATGGTGGGCGAG
CGCGCGGTGGTGGAGAACGAGACCAACAACCGGTTGCTGGAGAACTTGCCGCGGATTCCCCGGTC
GCGGGTCCGGTTCTTCAAGAACGGGGTGGAGCTGGCGCAGCGGCTCGAGGAGCTCTACCTGTTTT
TGCCCACCGAGGTGAGCACCGCCAACGTCGGGTACAACACTGCCCAGGCGCAGAACCCCGACTAC
CGCCAGACCGACGACGGGTCGCTTGGGTACTACCCGATGGTGTCGTGTTTCCAGGGGGCGGTGGT
GGAGTTGAACGCCGGGCCCGAGTTCCGGTACCCCGTGGGGGACGAGGCGCGGCCGTTGTGCGAGC
GGTTTGACGAGCTGGTGGTGGAGCTGTGGTACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTAC
TTGGATAGTTTTGAGTGAGGGAAGAAGAAGGAGGGGGATGAAGTG
Right flanking sequence: Indices 102936 -- 103435
TGAAAAAGATTAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAGAGACTGAGAA
GACTGAGAAGACTGAGAAAGACCGAGAAAGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATACA
AAGTCTCGATACCTAATGAAAGAGCCATAACTCTCAATCAATCTGGTTAATGTTTCATCTACTGT
CCTGCTCACCAAACCATTTACTTCCGAATACTGCCTCTAATAATGTATTATAATGCTATACATAA
TGTGATAGGAGTAGACAACCGGGAAGACTGAACGAGGCAAAGACTTAACGAGCTACTAAGCTAAA
CAGCTACACAATCAAACAGCCACATAAGCTAACAGCTACACAAGTCACAAGCTGCAAGCTATATT
CCACCCTTGTGCTGCTCGTCTCTCACCAGTCTCCGTACTGGCCACCTCTACAATCCTTCAATCCT
CTCAGTCATTCTCCACCACCTCTCAGTCATCCTTTAATCACCCTC
Found at i:102870 original size:27 final size:27
Alignment explanation
Indices: 102840--102934 Score: 131
Period size: 27 Copynumber: 3.5 Consensus size: 27
102830 GGATGAAGTG
102840 GATGAAGGTGATGACGGTGATGACGGT
1 GATGAAGGTGATGACGGTGATGACGGT
*
102867 GATGACGGTGATGACGGTGATGACGGT
1 GATGAAGGTGATGACGGTGATGACGGT
* *
102894 GATGACGGTGATGA-GGATGATGAAGGT
1 GATGAAGGTGATGACGG-TGATGACGGT
102921 GGAT-AAGGTGATGA
1 -GATGAAGGTGATGA
102935 ATGAAAAAGA
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
26 2 0.03
27 58 0.92
28 3 0.05
ACGTcount: A:0.27, C:0.06, G:0.44, T:0.22
Consensus pattern (27 bp):
GATGAAGGTGATGACGGTGATGACGGT
Left flanking sequence: Indices 102340 -- 102839
AGTACGAGTACACGCCCACCAAGGCGATGGAGCACTTGCTCAACCCGGTGCTGATGGTGGGCGAG
CGCGCGGTGGTGGAGAACGAGACCAACAACCGGTTGCTGGAGAACTTGCCGCGGATTCCCCGGTC
GCGGGTCCGGTTCTTCAAGAACGGGGTGGAGCTGGCGCAGCGGCTCGAGGAGCTCTACCTGTTTT
TGCCCACCGAGGTGAGCACCGCCAACGTCGGGTACAACACTGCCCAGGCGCAGAACCCCGACTAC
CGCCAGACCGACGACGGGTCGCTTGGGTACTACCCGATGGTGTCGTGTTTCCAGGGGGCGGTGGT
GGAGTTGAACGCCGGGCCCGAGTTCCGGTACCCCGTGGGGGACGAGGCGCGGCCGTTGTGCGAGC
GGTTTGACGAGCTGGTGGTGGAGCTGTGGTACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTAC
TTGGATAGTTTTGAGTGAGGGAAGAAGAAGGAGGGGGATGAAGTG
Right flanking sequence: Indices 102935 -- 103434
ATGAAAAAGATTAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAGAGACTGAGA
AGACTGAGAAGACTGAGAAAGACCGAGAAAGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATAC
AAAGTCTCGATACCTAATGAAAGAGCCATAACTCTCAATCAATCTGGTTAATGTTTCATCTACTG
TCCTGCTCACCAAACCATTTACTTCCGAATACTGCCTCTAATAATGTATTATAATGCTATACATA
ATGTGATAGGAGTAGACAACCGGGAAGACTGAACGAGGCAAAGACTTAACGAGCTACTAAGCTAA
ACAGCTACACAATCAAACAGCCACATAAGCTAACAGCTACACAAGTCACAAGCTGCAAGCTATAT
TCCACCCTTGTGCTGCTCGTCTCTCACCAGTCTCCGTACTGGCCACCTCTACAATCCTTCAATCC
TCTCAGTCATTCTCCACCACCTCTCAGTCATCCTTTAATCACCCT
Found at i:103005 original size:9 final size:9
Alignment explanation
Indices: 102991--103028 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
102981 TGGTTGAAAG
102991 AGACTGAGA
1 AGACTGAGA
103000 AGACTGAGA
1 AGACTGAGA
103009 AGACTGAGAA
1 AGACTGAG-A
*
103019 AGACCGAGA
1 AGACTGAGA
103028 A
1 A
103029 AGTCTGTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.47, C:0.13, G:0.32, T:0.08
Consensus pattern (9 bp):
AGACTGAGA
Left flanking sequence: Indices 102491 -- 102990
CGGGGTGGAGCTGGCGCAGCGGCTCGAGGAGCTCTACCTGTTTTTGCCCACCGAGGTGAGCACCG
CCAACGTCGGGTACAACACTGCCCAGGCGCAGAACCCCGACTACCGCCAGACCGACGACGGGTCG
CTTGGGTACTACCCGATGGTGTCGTGTTTCCAGGGGGCGGTGGTGGAGTTGAACGCCGGGCCCGA
GTTCCGGTACCCCGTGGGGGACGAGGCGCGGCCGTTGTGCGAGCGGTTTGACGAGCTGGTGGTGG
AGCTGTGGTACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTACTTGGATAGTTTTGAGTGAGGG
AAGAAGAAGGAGGGGGATGAAGTGGATGAAGGTGATGACGGTGATGACGGTGATGACGGTGATGA
CGGTGATGACGGTGATGACGGTGATGAGGATGATGAAGGTGGATAAGGTGATGAATGAAAAAGAT
TAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAG
Right flanking sequence: Indices 103029 -- 103528
AGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATACAAAGTCTCGATACCTAATGAAAGAGCCAT
AACTCTCAATCAATCTGGTTAATGTTTCATCTACTGTCCTGCTCACCAAACCATTTACTTCCGAA
TACTGCCTCTAATAATGTATTATAATGCTATACATAATGTGATAGGAGTAGACAACCGGGAAGAC
TGAACGAGGCAAAGACTTAACGAGCTACTAAGCTAAACAGCTACACAATCAAACAGCCACATAAG
CTAACAGCTACACAAGTCACAAGCTGCAAGCTATATTCCACCCTTGTGCTGCTCGTCTCTCACCA
GTCTCCGTACTGGCCACCTCTACAATCCTTCAATCCTCTCAGTCATTCTCCACCACCTCTCAGTC
ATCCTTTAATCACCCTCCCATCATCCTCAAACCACCTCATCCCCCCACACCCGGCTTCACGGGCC
CAAACGGGGTGGCCGCCACCAGCAGCGACCGCAGAAACACCGCAA
Found at i:103014 original size:18 final size:19
Alignment explanation
Indices: 102991--103028 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
102981 TGGTTGAAAG
*
102991 AGACTGAG-AAGACTGAGA
1 AGACTGAGAAAGACCGAGA
103009 AGACTGAGAAAGACCGAGA
1 AGACTGAGAAAGACCGAGA
103028 A
1 A
103029 AGTCTGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.47, C:0.13, G:0.32, T:0.08
Consensus pattern (19 bp):
AGACTGAGAAAGACCGAGA
Left flanking sequence: Indices 102491 -- 102990
CGGGGTGGAGCTGGCGCAGCGGCTCGAGGAGCTCTACCTGTTTTTGCCCACCGAGGTGAGCACCG
CCAACGTCGGGTACAACACTGCCCAGGCGCAGAACCCCGACTACCGCCAGACCGACGACGGGTCG
CTTGGGTACTACCCGATGGTGTCGTGTTTCCAGGGGGCGGTGGTGGAGTTGAACGCCGGGCCCGA
GTTCCGGTACCCCGTGGGGGACGAGGCGCGGCCGTTGTGCGAGCGGTTTGACGAGCTGGTGGTGG
AGCTGTGGTACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTACTTGGATAGTTTTGAGTGAGGG
AAGAAGAAGGAGGGGGATGAAGTGGATGAAGGTGATGACGGTGATGACGGTGATGACGGTGATGA
CGGTGATGACGGTGATGACGGTGATGAGGATGATGAAGGTGGATAAGGTGATGAATGAAAAAGAT
TAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAG
Right flanking sequence: Indices 103029 -- 103528
AGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATACAAAGTCTCGATACCTAATGAAAGAGCCAT
AACTCTCAATCAATCTGGTTAATGTTTCATCTACTGTCCTGCTCACCAAACCATTTACTTCCGAA
TACTGCCTCTAATAATGTATTATAATGCTATACATAATGTGATAGGAGTAGACAACCGGGAAGAC
TGAACGAGGCAAAGACTTAACGAGCTACTAAGCTAAACAGCTACACAATCAAACAGCCACATAAG
CTAACAGCTACACAAGTCACAAGCTGCAAGCTATATTCCACCCTTGTGCTGCTCGTCTCTCACCA
GTCTCCGTACTGGCCACCTCTACAATCCTTCAATCCTCTCAGTCATTCTCCACCACCTCTCAGTC
ATCCTTTAATCACCCTCCCATCATCCTCAAACCACCTCATCCCCCCACACCCGGCTTCACGGGCC
CAAACGGGGTGGCCGCCACCAGCAGCGACCGCAGAAACACCGCAA
Found at i:103265 original size:16 final size:17
Alignment explanation
Indices: 103246--103300 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 17
103236 AGACTTAACG
103246 AGCTAC-TAAGCTAAAC
1 AGCTACATAAGCTAAAC
* *
103262 AGCTACACAATC-AAAC
1 AGCTACATAAGCTAAAC
*
103278 AGCCACATAAGCT-AAC
1 AGCTACATAAGCTAAAC
103294 AGCTACA
1 AGCTACA
103301 CAAGTCACAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
16 28 0.90
17 3 0.10
ACGTcount: A:0.45, C:0.29, G:0.11, T:0.15
Consensus pattern (17 bp):
AGCTACATAAGCTAAAC
Left flanking sequence: Indices 102746 -- 103245
GGTGGAGCTGTGGTACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTACTTGGATAGTTTTGAGT
GAGGGAAGAAGAAGGAGGGGGATGAAGTGGATGAAGGTGATGACGGTGATGACGGTGATGACGGT
GATGACGGTGATGACGGTGATGACGGTGATGAGGATGATGAAGGTGGATAAGGTGATGAATGAAA
AAGATTAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAGAGACTGAGAAGACTG
AGAAGACTGAGAAAGACCGAGAAAGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATACAAAGTC
TCGATACCTAATGAAAGAGCCATAACTCTCAATCAATCTGGTTAATGTTTCATCTACTGTCCTGC
TCACCAAACCATTTACTTCCGAATACTGCCTCTAATAATGTATTATAATGCTATACATAATGTGA
TAGGAGTAGACAACCGGGAAGACTGAACGAGGCAAAGACTTAACG
Right flanking sequence: Indices 103301 -- 103800
CAAGTCACAAGCTGCAAGCTATATTCCACCCTTGTGCTGCTCGTCTCTCACCAGTCTCCGTACTG
GCCACCTCTACAATCCTTCAATCCTCTCAGTCATTCTCCACCACCTCTCAGTCATCCTTTAATCA
CCCTCCCATCATCCTCAAACCACCTCATCCCCCCACACCCGGCTTCACGGGCCCAAACGGGGTGG
CCGCCACCAGCAGCGACCGCAGAAACACCGCAAAGCACCGGGGATGGAAAAACCGCTCAGGCTCA
CCAGCCACCGCCATCCCCAGCGTCATCACAATGTCGTCGCACCCGCTGCACCTCACCACGTCGCC
CAGCGCCCCGTGGCGGTCGAGCAAGTACAGCGCCAACTCCGCCACCGCCCGCGGCGACAAGTACA
CGTGGTCGCGGTCCTCCTCGAGCCACCCGTCGTCGACAAACCGCGTGAGCTGGTAGTCCAGCTGC
TTGAGGGTGCGGTTGGCGACCTCGCCGAGCTTGCGGTAGGCGTTG
Found at i:104167 original size:12 final size:12
Alignment explanation
Indices: 104149--104197 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
104139 CGACGGAGGT
104149 GCGTTGGAGGGA
1 GCGTTGGAGGGA
*
104161 ACGTTGGAGGTG-
1 GCGTTGGAGG-GA
104173 GCGTTGGAGGGA
1 GCGTTGGAGGGA
*
104185 GCATTGGAGGGA
1 GCGTTGGAGGGA
104197 G
1 G
104198 TGTCGGACTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.18, C:0.08, G:0.55, T:0.18
Consensus pattern (12 bp):
GCGTTGGAGGGA
Left flanking sequence: Indices 103649 -- 104148
AGTACAGCGCCAACTCCGCCACCGCCCGCGGCGACAAGTACACGTGGTCGCGGTCCTCCTCGAGC
CACCCGTCGTCGACAAACCGCGTGAGCTGGTAGTCCAGCTGCTTGAGGGTGCGGTTGGCGACCTC
GCCGAGCTTGCGGTAGGCGTTGACCCGGCCCACCGAGTACTGGCGGCCGGGCTGGGCCACAATGT
CGTCGATGAGCTGCTTGAGAAAGTCGAGCTCCGCCACCAGGTACCCCGTGGCGAGCTTCAGCACG
GGGTCGGGCTCGGTGTTGGTGAAGATGTAGCAGAGCTCGCCCGCGGTGTCGTCGTACTTGCGGGC
GATCTTGAACCCGTGGTCGGCGATGCGGGCGTTGATGGTGGCGATGACGGTGTCGGTGTCGAGGG
GAGTGGGAGCCAGAGGTGGTTGTGGAGCAAGAGGTGGTGGTTGTTGTCGTGGTGGTTGTGGAGCC
TGTGGCTGTGGTGTGCTGGTGTGTGTCGACACCTCCGACGGAGGT
Right flanking sequence: Indices 104198 -- 104697
TGTCGGACTCGAGAGGTGTTTCCGGTGGTGGTTCAGAAAGCACTTCGAGAGCGCGCTCGACCAGC
GACACGGGGACGCTCTTGAGGCCGCGGATGTAGGTGAGGATGCCGCGGTGCACCTCGGTGAACAG
CGAGGTGGGGTACTCGGGCTCGGGCGTGGGCAGGGCCGTCGCCTCGTAGTCGGACATGACGCGTC
GCACTGGATCGGGATGTGTGAAGAGTGAAGAGTGAAGAAATGTGGGAGTGGTGAAGAATGAAAGA
GTGGGAAAGAAATGAAATAGGACGGAGTTTGGGTGGAAGAGATGAGAATACGGGAGTGTAGAGGG
TTTTGGGGGTCAATTGAACGTGAGGTCGGATTTGGTGTGGTGCACTGGGATGAGGAGTAGCGATA
CGCCAGGATATGACGGTTTAACAGTGAAAGCTAGGGCGGGTTTTGAATGAACATTAGCGTAAAGT
AAATTCAGGATCAAATGTTGAGGGATACTAGATTCTGACTTGAGC
Found at i:104179 original size:24 final size:23
Alignment explanation
Indices: 104143--104194 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
104133 CACCTCCGAC
*
104143 GGAGGTGCGTTGGAGGGAACGTT
1 GGAGGTGCGTTGGAGGGAACATT
*
104166 GGAGGTGGCGTTGGAGGGAGCATT
1 GGAGGT-GCGTTGGAGGGAACATT
104190 GGAGG
1 GGAGG
104195 GAGTGTCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.17, C:0.08, G:0.56, T:0.19
Consensus pattern (23 bp):
GGAGGTGCGTTGGAGGGAACATT
Left flanking sequence: Indices 103643 -- 104142
CGAGCAAGTACAGCGCCAACTCCGCCACCGCCCGCGGCGACAAGTACACGTGGTCGCGGTCCTCC
TCGAGCCACCCGTCGTCGACAAACCGCGTGAGCTGGTAGTCCAGCTGCTTGAGGGTGCGGTTGGC
GACCTCGCCGAGCTTGCGGTAGGCGTTGACCCGGCCCACCGAGTACTGGCGGCCGGGCTGGGCCA
CAATGTCGTCGATGAGCTGCTTGAGAAAGTCGAGCTCCGCCACCAGGTACCCCGTGGCGAGCTTC
AGCACGGGGTCGGGCTCGGTGTTGGTGAAGATGTAGCAGAGCTCGCCCGCGGTGTCGTCGTACTT
GCGGGCGATCTTGAACCCGTGGTCGGCGATGCGGGCGTTGATGGTGGCGATGACGGTGTCGGTGT
CGAGGGGAGTGGGAGCCAGAGGTGGTTGTGGAGCAAGAGGTGGTGGTTGTTGTCGTGGTGGTTGT
GGAGCCTGTGGCTGTGGTGTGCTGGTGTGTGTCGACACCTCCGAC
Right flanking sequence: Indices 104195 -- 104694
GAGTGTCGGACTCGAGAGGTGTTTCCGGTGGTGGTTCAGAAAGCACTTCGAGAGCGCGCTCGACC
AGCGACACGGGGACGCTCTTGAGGCCGCGGATGTAGGTGAGGATGCCGCGGTGCACCTCGGTGAA
CAGCGAGGTGGGGTACTCGGGCTCGGGCGTGGGCAGGGCCGTCGCCTCGTAGTCGGACATGACGC
GTCGCACTGGATCGGGATGTGTGAAGAGTGAAGAGTGAAGAAATGTGGGAGTGGTGAAGAATGAA
AGAGTGGGAAAGAAATGAAATAGGACGGAGTTTGGGTGGAAGAGATGAGAATACGGGAGTGTAGA
GGGTTTTGGGGGTCAATTGAACGTGAGGTCGGATTTGGTGTGGTGCACTGGGATGAGGAGTAGCG
ATACGCCAGGATATGACGGTTTAACAGTGAAAGCTAGGGCGGGTTTTGAATGAACATTAGCGTAA
AGTAAATTCAGGATCAAATGTTGAGGGATACTAGATTCTGACTTG
Found at i:105409 original size:50 final size:48
Alignment explanation
Indices: 105355--105484 Score: 129
Period size: 48 Copynumber: 2.7 Consensus size: 48
105345 GTACGAAACA
*
105355 ATTCTAGCCCACCGTCGA-GTAAAGATTCTACACGTCTCCAATACCGAACG
1 ATTCTAGCCCAACGTC-ATGTAAAGATTCTA-ACGTCT-CAATACCGAACG
* * * *
105405 ATTCTAGCCCAATGTCATGTAAAGATTCTATCGTCTCACTACGGAACG
1 ATTCTAGCCCAACGTCATGTAAAGATTCTAACGTCTCAATACCGAACG
* * * *
105453 ATTCTA-ACCAGATGTCAAGTAAAGGTTCTAAC
1 ATTCTAGCCCA-ACGTCATGTAAAGATTCTAAC
105485 CGTTGACCTT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
47 3 0.04
48 34 0.49
49 6 0.09
50 26 0.38
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (48 bp):
ATTCTAGCCCAACGTCATGTAAAGATTCTAACGTCTCAATACCGAACG
Left flanking sequence: Indices 104855 -- 105354
TGCTTGAATAATTCTAACCATCACCGAGTCGAACGGTCAACCAAGAAAGAATTTTGATCATATTA
GGCCGTGAAAGATTCTAGCCAGTGTCATTGACAGATTCTAACCAATGTCTAGGAGCATTCGAGGG
TTCTACCGTCGCCGAGTTGAAAGGTTCTAACAATTCTATCCGCAATGACCAAGAACGATTCTAGC
CAGTGCCATTGACAGATTCTAACCATGGCATGGGGAACATTACAGTATTCTAACCGTCACCGGAT
GGATAATTCTAACCATGTACAAAGCTCCATCCGAATGGCCGGTAAACGATTCTAGCCAGTGCCAT
TGACAGATTCTAACCAAAGCAAAGTTACCATCGAAAGATCTGTGAACGGGGGTAAAGTTTCTAGC
CATCGGCAATCATAGATCATTGCCAGAGGCAAAGGTTCTAGCCTAATGTCGGTAAAGATTCTAAC
CAGAGATGGGTCGATGTGAGATCTACCCGTTTTCAGTACGAAACA
Right flanking sequence: Indices 105485 -- 105984
CGTTGACCTTTTGACCATTCTACCACCCCCCAGATTCGCTGATCTGGCTATAAAGTTTCTAGCCT
GTAACTCAAGCTTCTAACCGTTCCTTCAAAACATTCCTCTACTCGGAATGTAAACACCCAACACA
CGACTACCATTGCCACCGCCAGATCTGGAAAATCTATGTGTGCCAAGAAATGAAATACACGAAGT
GGTCCAAAGACACCACACTCTCACTATAAATATGGCTCTAACGAGTGAATACACACGTCTGATTA
TCTATTACACTTACTTTGGAGTCATCTACAGTGTAGAAGGACCAAGTATGTCGCATAACCCGATC
GAGAAGCCCGAAGTGAGCCACCGCAAGACTAACCACATGGATTCACCGAGGACTAAACCTATCTG
TTGGTGAAAGAATTAACCTCTACCAATTACTCCAGTTACACCCGTTCAAACATGCTTTTTCTCGG
CTTTCGTCCGCTCCGAGCCAATCTCGGACTTGTTCGTTACCGTAT
Found at i:105468 original size:48 final size:50
Alignment explanation
Indices: 105372--105482 Score: 138
Period size: 48 Copynumber: 2.3 Consensus size: 50
105362 CCCACCGTCG
*
105372 AGTAAAGATTCTACACGTCTCCAATACCGAACGATTCTAGCCCAATGTCA
1 AGTAAAGATTCTACACGTCTCCAATACCGAACGATTCTAGACCAATGTCA
* * * *
105422 TGTAAAGATTCTA-TCGTCT-CACTACGGAACGATTCTA-ACCAGATGTCA
1 AGTAAAGATTCTACACGTCTCCAATACCGAACGATTCTAGACCA-ATGTCA
*
105470 AGTAAAGGTTCTA
1 AGTAAAGATTCTA
105483 ACCGTTGACC
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.06
48 33 0.62
49 5 0.09
50 12 0.23
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (50 bp):
AGTAAAGATTCTACACGTCTCCAATACCGAACGATTCTAGACCAATGTCA
Left flanking sequence: Indices 104872 -- 105371
CCATCACCGAGTCGAACGGTCAACCAAGAAAGAATTTTGATCATATTAGGCCGTGAAAGATTCTA
GCCAGTGTCATTGACAGATTCTAACCAATGTCTAGGAGCATTCGAGGGTTCTACCGTCGCCGAGT
TGAAAGGTTCTAACAATTCTATCCGCAATGACCAAGAACGATTCTAGCCAGTGCCATTGACAGAT
TCTAACCATGGCATGGGGAACATTACAGTATTCTAACCGTCACCGGATGGATAATTCTAACCATG
TACAAAGCTCCATCCGAATGGCCGGTAAACGATTCTAGCCAGTGCCATTGACAGATTCTAACCAA
AGCAAAGTTACCATCGAAAGATCTGTGAACGGGGGTAAAGTTTCTAGCCATCGGCAATCATAGAT
CATTGCCAGAGGCAAAGGTTCTAGCCTAATGTCGGTAAAGATTCTAACCAGAGATGGGTCGATGT
GAGATCTACCCGTTTTCAGTACGAAACAATTCTAGCCCACCGTCG
Right flanking sequence: Indices 105483 -- 105982
ACCGTTGACCTTTTGACCATTCTACCACCCCCCAGATTCGCTGATCTGGCTATAAAGTTTCTAGC
CTGTAACTCAAGCTTCTAACCGTTCCTTCAAAACATTCCTCTACTCGGAATGTAAACACCCAACA
CACGACTACCATTGCCACCGCCAGATCTGGAAAATCTATGTGTGCCAAGAAATGAAATACACGAA
GTGGTCCAAAGACACCACACTCTCACTATAAATATGGCTCTAACGAGTGAATACACACGTCTGAT
TATCTATTACACTTACTTTGGAGTCATCTACAGTGTAGAAGGACCAAGTATGTCGCATAACCCGA
TCGAGAAGCCCGAAGTGAGCCACCGCAAGACTAACCACATGGATTCACCGAGGACTAAACCTATC
TGTTGGTGAAAGAATTAACCTCTACCAATTACTCCAGTTACACCCGTTCAAACATGCTTTTTCTC
GGCTTTCGTCCGCTCCGAGCCAATCTCGGACTTGTTCGTTACCGT
Found at i:106404 original size:12 final size:12
Alignment explanation
Indices: 106387--106433 Score: 58
Period size: 12 Copynumber: 3.6 Consensus size: 12
106377 TTACCCAAAA
106387 AACCCACCACCC
1 AACCCACCACCC
106399 AACCCACCACACAAC
1 AACCCACCAC-C--C
106414 ACACCCACCACCC
1 A-ACCCACCACCC
106427 AACCCAC
1 AACCCAC
106434 ACCACACGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 16 0.52
13 3 0.10
15 3 0.10
16 9 0.29
ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00
Consensus pattern (12 bp):
AACCCACCACCC
Left flanking sequence: Indices 105887 -- 106386
TTAACCTCTACCAATTACTCCAGTTACACCCGTTCAAACATGCTTTTTCTCGGCTTTCGTCCGCT
CCGAGCCAATCTCGGACTTGTTCGTTACCGTATCACCAAGTCACTACGCAAAACCACACACACAG
AGATCGGACTAAATGGGCCACTTAGAACTGATCCACCCAATCACCCCGCTAGCGAACACTTCCCA
AAACCACCCGTTCCTCGGGCACAATGGCCGGCCGGGGAAACGCATATTCCCGATCCGGCGATTAC
CAAACCGTGATCCACGAGTAACCACCTCTACCCACTTCTACACCCACCATACACTCGATCCCACC
ACGATCCCACCCCGATCTCACTACCTACCCCACTTCCTAACCGTTCCCCGTCCCTCCCACACTCT
CACCCATCTCCCCACCACGTCACTCTCGGCGTGCTCATGCAAGCCTCGATCCAATTCCAGCTGCC
TAACCCACGCCACCACCACCGATACAACCCACCACTTACCCAAAA
Right flanking sequence: Indices 106434 -- 106933
ACCACACGACCAACCCCTCTTACCTCCTTTCCTTCTTCCTTCTTCCCCTCTACCCTCTTCCTCCT
TCCCGTTTTGAGCCCCGCCACGCAATCGCACTCGGTCGACTGCTACCCACCGGGACCACCCCAAC
CGCTGGACAGCTGCTTCCCGAGCATAAAAGCCCATCCCGCTGCTGACACCCCCAATGAACGTATC
CAGTGTCAAGGGCGCGTCGTTCGCGCTGATAGTCACCTGCGACCCCGACAAATACCTGGCCCTCT
ACCAGTTCTACTACGACCTCGGGTTCCGGGTCACCAAAAACTACCTGAAGGTGTCGCTGCTGACC
AATGCCGCGCTCGGAGGCACCTACGGCCCGCTGATGACGCTCGGCGTGGCCAACGACTCGCTCAA
GGAGTTGTGGATGGAGCTGTTCCCGCTCCAGGACCGCGACGCCAAGGGCCACATCACCCCGTGGC
AGGAGCTCAGCATCTACGACGGCGACGTGTCGGAGCCGTTGTGCC
Found at i:106449 original size:23 final size:24
Alignment explanation
Indices: 106397--106449 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
106387 AACCCACCAC
106397 CCAACCCACCACACAACACACCCA
1 CCAACCCACCACACAACACACCCA
* *
106421 CC-ACCCAACC-CACACCACA-CGA
1 CCAACCC-ACCACACAACACACCCA
106443 CCAACCC
1 CCAACCC
106450 CTCTTACCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 4 0.16
23 16 0.64
24 5 0.20
ACGTcount: A:0.38, C:0.60, G:0.02, T:0.00
Consensus pattern (24 bp):
CCAACCCACCACACAACACACCCA
Left flanking sequence: Indices 105897 -- 106396
CCAATTACTCCAGTTACACCCGTTCAAACATGCTTTTTCTCGGCTTTCGTCCGCTCCGAGCCAAT
CTCGGACTTGTTCGTTACCGTATCACCAAGTCACTACGCAAAACCACACACACAGAGATCGGACT
AAATGGGCCACTTAGAACTGATCCACCCAATCACCCCGCTAGCGAACACTTCCCAAAACCACCCG
TTCCTCGGGCACAATGGCCGGCCGGGGAAACGCATATTCCCGATCCGGCGATTACCAAACCGTGA
TCCACGAGTAACCACCTCTACCCACTTCTACACCCACCATACACTCGATCCCACCACGATCCCAC
CCCGATCTCACTACCTACCCCACTTCCTAACCGTTCCCCGTCCCTCCCACACTCTCACCCATCTC
CCCACCACGTCACTCTCGGCGTGCTCATGCAAGCCTCGATCCAATTCCAGCTGCCTAACCCACGC
CACCACCACCGATACAACCCACCACTTACCCAAAAAACCCACCAC
Right flanking sequence: Indices 106450 -- 106949
CTCTTACCTCCTTTCCTTCTTCCTTCTTCCCCTCTACCCTCTTCCTCCTTCCCGTTTTGAGCCCC
GCCACGCAATCGCACTCGGTCGACTGCTACCCACCGGGACCACCCCAACCGCTGGACAGCTGCTT
CCCGAGCATAAAAGCCCATCCCGCTGCTGACACCCCCAATGAACGTATCCAGTGTCAAGGGCGCG
TCGTTCGCGCTGATAGTCACCTGCGACCCCGACAAATACCTGGCCCTCTACCAGTTCTACTACGA
CCTCGGGTTCCGGGTCACCAAAAACTACCTGAAGGTGTCGCTGCTGACCAATGCCGCGCTCGGAG
GCACCTACGGCCCGCTGATGACGCTCGGCGTGGCCAACGACTCGCTCAAGGAGTTGTGGATGGAG
CTGTTCCCGCTCCAGGACCGCGACGCCAAGGGCCACATCACCCCGTGGCAGGAGCTCAGCATCTA
CGACGGCGACGTGTCGGAGCCGTTGTGCCAGACCACGGTGATCAA
Found at i:109711 original size:46 final size:44
Alignment explanation
Indices: 109631--109754 Score: 126
Period size: 46 Copynumber: 2.8 Consensus size: 44
109621 GAGTGAAGAA
* * * *
109631 AAGGAGTAGAGAA-A-GAAGAGTAGAGAATGGAGAAATGAGAAGT
1 AAGGAGTAGAGAATAGGAATAGAAG-GAGTGGAGAAATGAGAAAT
* * * *
109674 ATGGAGTAGTGAATAGAGAAATGGAAGGTGTGGAGAAATGAGAAAT
1 AAGGAGTAGAGAATAG-G-AATAGAAGGAGTGGAGAAATGAGAAAT
*
109720 AAGGAGTGGAGAATAGGAATAGAAGGAGTGGAGAA
1 AAGGAGTAGAGAATAGGAATAGAAGGAGTGGAGAA
109755 TGGAAGAATA
Statistics
Matches: 64, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
43 11 0.17
44 17 0.27
45 1 0.02
46 30 0.47
47 5 0.08
ACGTcount: A:0.47, C:0.00, G:0.39, T:0.15
Consensus pattern (44 bp):
AAGGAGTAGAGAATAGGAATAGAAGGAGTGGAGAAATGAGAAAT
Left flanking sequence: Indices 109131 -- 109630
TATTCGCAACGAGCAGGCGCTGACGGTGTACACGACGCAGTTGGTGGCGGACATCATCAAGGAGA
GCGCCAAGGGCCGGTTTGACACGCGGACGGCGATCCCGGGCCACGTGCAGCAGGGGTACGTGCCG
CTGCCGTTGGACCGGGTGATGGCGGTGCGGCTTTCGATCAAGGGGCTCCAGTTCATTGAGCGGCT
GGCGGCGGCGTTCAGCGTGTCGTCTGCCGAGGAGAGCACCGGCAACGCGGTGGTGATGGGCATCT
TGCAGGGCCAGGACACGTTGACGCCGGTGGACGAGTTGTATGATACGGAGGCGGACGTGGCGCTT
CGCAAGGGCAAGACCGTGCACTGGCGGGTGCTCACCGAGGTGTCGGACATCTTGCTGGGGCGGCT
CTTGTTGCGGCAGCGCAAGGAGGCGCAACTTGTGGGGTAGGGATGCTCAGCTGGGGTAGGAGAAG
AGTACGTATGTGAATGGTAATGAAGGAAAGGAATGGAGTGAAGAA
Right flanking sequence: Indices 109755 -- 110254
TGGAAGAATAGAAAAAGTGGAGAAATAGAAATGGAAGAAGTGGGGAATGGAAGAATAGATGAAAT
GGAGAAATGGGAAATATGGAGTGGAGAATGGAGAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGT
GCTGCGAACTGGTAGAGGTGGTACCGACTCAAATAAAGCTTTGGAAGCATGGTCCCAATTCATCT
CCAGCAATGCTCTACTGGAGCGAATTCTTGTAATTGTAATTTATGGCACTCGAATGCTATGTCAT
ATCTCGATTCAGATATGGATGGACACTCGTGGTAACCTGAATGTGAGTGAAAGTCGAAATGGTTG
GTACAGTTTTAAGAAAATGAGCGCATTGGTGGAGGGAACTGTGGGGACTGGCGGAGCTGTGGGGT
GGTGGATGGTACTGTGGACTAGAGTAAAATTCCTCCTCTCTTTCTGTTTAAACGCAAAATAGAGA
TGGTAATACACTATTATAAAAGTATTATGCTCCGAATGAAAATAT
Found at i:109728 original size:22 final size:22
Alignment explanation
Indices: 109658--109754 Score: 74
Period size: 22 Copynumber: 4.3 Consensus size: 22
109648 GAGTAGAGAA
* *
109658 TGGAGAAATGAGAAGTATGGAG
1 TGGAGAAATGAGAAATAAGGAG
* * *
109680 TAGTG-AATAGAGAAATGGAAGGTG
1 TGGAGAAAT-GAGAAAT--AAGGAG
109704 TGGAGAAATGAGAAATAAGGAG
1 TGGAGAAATGAGAAATAAGGAG
*
109726 TGGAG-AAT-AGGAATAGAAGGAG
1 TGGAGAAATGA-GAA-ATAAGGAG
109748 TGGAGAA
1 TGGAGAA
109755 TGGAAGAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
20 1 0.02
21 9 0.15
22 31 0.53
23 1 0.02
24 14 0.24
25 3 0.05
ACGTcount: A:0.44, C:0.00, G:0.39, T:0.16
Consensus pattern (22 bp):
TGGAGAAATGAGAAATAAGGAG
Left flanking sequence: Indices 109158 -- 109657
GTACACGACGCAGTTGGTGGCGGACATCATCAAGGAGAGCGCCAAGGGCCGGTTTGACACGCGGA
CGGCGATCCCGGGCCACGTGCAGCAGGGGTACGTGCCGCTGCCGTTGGACCGGGTGATGGCGGTG
CGGCTTTCGATCAAGGGGCTCCAGTTCATTGAGCGGCTGGCGGCGGCGTTCAGCGTGTCGTCTGC
CGAGGAGAGCACCGGCAACGCGGTGGTGATGGGCATCTTGCAGGGCCAGGACACGTTGACGCCGG
TGGACGAGTTGTATGATACGGAGGCGGACGTGGCGCTTCGCAAGGGCAAGACCGTGCACTGGCGG
GTGCTCACCGAGGTGTCGGACATCTTGCTGGGGCGGCTCTTGTTGCGGCAGCGCAAGGAGGCGCA
ACTTGTGGGGTAGGGATGCTCAGCTGGGGTAGGAGAAGAGTACGTATGTGAATGGTAATGAAGGA
AAGGAATGGAGTGAAGAAAAGGAGTAGAGAAAGAAGAGTAGAGAA
Right flanking sequence: Indices 109755 -- 110254
TGGAAGAATAGAAAAAGTGGAGAAATAGAAATGGAAGAAGTGGGGAATGGAAGAATAGATGAAAT
GGAGAAATGGGAAATATGGAGTGGAGAATGGAGAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGT
GCTGCGAACTGGTAGAGGTGGTACCGACTCAAATAAAGCTTTGGAAGCATGGTCCCAATTCATCT
CCAGCAATGCTCTACTGGAGCGAATTCTTGTAATTGTAATTTATGGCACTCGAATGCTATGTCAT
ATCTCGATTCAGATATGGATGGACACTCGTGGTAACCTGAATGTGAGTGAAAGTCGAAATGGTTG
GTACAGTTTTAAGAAAATGAGCGCATTGGTGGAGGGAACTGTGGGGACTGGCGGAGCTGTGGGGT
GGTGGATGGTACTGTGGACTAGAGTAAAATTCCTCCTCTCTTTCTGTTTAAACGCAAAATAGAGA
TGGTAATACACTATTATAAAAGTATTATGCTCCGAATGAAAATAT
Found at i:109773 original size:24 final size:24
Alignment explanation
Indices: 109724--109825 Score: 95
Period size: 24 Copynumber: 4.4 Consensus size: 24
109714 AGAAATAAGG
* *
109724 AGTGGAGAAT--AGGAATAGAAGG
1 AGTGGAGAATGGAAGAATAGAAGA
*
109746 AGTGGAGAATGGAAGAATAGAAAA
1 AGTGGAGAATGGAAGAATAGAAGA
* *
109770 AGTGGAGAAATAG-A-AATGGAAGA
1 AGTGGAG-AATGGAAGAATAGAAGA
* *
109793 AGTGGGGAATGGAAGAATAGATGA
1 AGTGGAGAATGGAAGAATAGAAGA
*
109817 AATGGAGAA
1 AGTGGAGAA
109826 ATGGGAAATA
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
22 14 0.22
23 14 0.22
24 31 0.49
25 4 0.06
ACGTcount: A:0.49, C:0.00, G:0.37, T:0.14
Consensus pattern (24 bp):
AGTGGAGAATGGAAGAATAGAAGA
Left flanking sequence: Indices 109224 -- 109723
GGCGATCCCGGGCCACGTGCAGCAGGGGTACGTGCCGCTGCCGTTGGACCGGGTGATGGCGGTGC
GGCTTTCGATCAAGGGGCTCCAGTTCATTGAGCGGCTGGCGGCGGCGTTCAGCGTGTCGTCTGCC
GAGGAGAGCACCGGCAACGCGGTGGTGATGGGCATCTTGCAGGGCCAGGACACGTTGACGCCGGT
GGACGAGTTGTATGATACGGAGGCGGACGTGGCGCTTCGCAAGGGCAAGACCGTGCACTGGCGGG
TGCTCACCGAGGTGTCGGACATCTTGCTGGGGCGGCTCTTGTTGCGGCAGCGCAAGGAGGCGCAA
CTTGTGGGGTAGGGATGCTCAGCTGGGGTAGGAGAAGAGTACGTATGTGAATGGTAATGAAGGAA
AGGAATGGAGTGAAGAAAAGGAGTAGAGAAAGAAGAGTAGAGAATGGAGAAATGAGAAGTATGGA
GTAGTGAATAGAGAAATGGAAGGTGTGGAGAAATGAGAAATAAGG
Right flanking sequence: Indices 109826 -- 110325
ATGGGAAATATGGAGTGGAGAATGGAGAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGTGCTGCG
AACTGGTAGAGGTGGTACCGACTCAAATAAAGCTTTGGAAGCATGGTCCCAATTCATCTCCAGCA
ATGCTCTACTGGAGCGAATTCTTGTAATTGTAATTTATGGCACTCGAATGCTATGTCATATCTCG
ATTCAGATATGGATGGACACTCGTGGTAACCTGAATGTGAGTGAAAGTCGAAATGGTTGGTACAG
TTTTAAGAAAATGAGCGCATTGGTGGAGGGAACTGTGGGGACTGGCGGAGCTGTGGGGTGGTGGA
TGGTACTGTGGACTAGAGTAAAATTCCTCCTCTCTTTCTGTTTAAACGCAAAATAGAGATGGTAA
TACACTATTATAAAAGTATTATGCTCCGAATGAAAATATATACATCACCATTAAACAGAAAATTA
ACCAAATTTAAAAGTGGGTGCTAAAATGGCTGACAGTCCCCATGG
Found at i:109797 original size:47 final size:48
Alignment explanation
Indices: 109724--109851 Score: 142
Period size: 47 Copynumber: 2.8 Consensus size: 48
109714 AGAAATAAGG
* *
109724 AGTGGAG-AATAGGAATAGAAGGAGTGGAGAATGGAAGAATAGA-AAA
1 AGTGGAGAAATAGAAATAGAAGAAGTGGAGAATGGAAGAATAGATAAA
* * *
109770 AGTGGAGAAATAGAAATGGAAGAAGTGGGGAATGGAAGAATAGATGAA
1 AGTGGAGAAATAGAAATAGAAGAAGTGGAGAATGGAAGAATAGATAAA
*
109818 A-TGGAGAAATGGGAAATATG--G-AGTGGAGAATGGA
1 AGTGGAGAAAT-AGAAATA-GAAGAAGTGGAGAATGGA
109852 GAAAATGCAA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
46 19 0.27
47 42 0.60
48 8 0.11
49 1 0.01
ACGTcount: A:0.47, C:0.00, G:0.38, T:0.15
Consensus pattern (48 bp):
AGTGGAGAAATAGAAATAGAAGAAGTGGAGAATGGAAGAATAGATAAA
Left flanking sequence: Indices 109224 -- 109723
GGCGATCCCGGGCCACGTGCAGCAGGGGTACGTGCCGCTGCCGTTGGACCGGGTGATGGCGGTGC
GGCTTTCGATCAAGGGGCTCCAGTTCATTGAGCGGCTGGCGGCGGCGTTCAGCGTGTCGTCTGCC
GAGGAGAGCACCGGCAACGCGGTGGTGATGGGCATCTTGCAGGGCCAGGACACGTTGACGCCGGT
GGACGAGTTGTATGATACGGAGGCGGACGTGGCGCTTCGCAAGGGCAAGACCGTGCACTGGCGGG
TGCTCACCGAGGTGTCGGACATCTTGCTGGGGCGGCTCTTGTTGCGGCAGCGCAAGGAGGCGCAA
CTTGTGGGGTAGGGATGCTCAGCTGGGGTAGGAGAAGAGTACGTATGTGAATGGTAATGAAGGAA
AGGAATGGAGTGAAGAAAAGGAGTAGAGAAAGAAGAGTAGAGAATGGAGAAATGAGAAGTATGGA
GTAGTGAATAGAGAAATGGAAGGTGTGGAGAAATGAGAAATAAGG
Right flanking sequence: Indices 109852 -- 110351
GAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGTGCTGCGAACTGGTAGAGGTGGTACCGACTCAA
ATAAAGCTTTGGAAGCATGGTCCCAATTCATCTCCAGCAATGCTCTACTGGAGCGAATTCTTGTA
ATTGTAATTTATGGCACTCGAATGCTATGTCATATCTCGATTCAGATATGGATGGACACTCGTGG
TAACCTGAATGTGAGTGAAAGTCGAAATGGTTGGTACAGTTTTAAGAAAATGAGCGCATTGGTGG
AGGGAACTGTGGGGACTGGCGGAGCTGTGGGGTGGTGGATGGTACTGTGGACTAGAGTAAAATTC
CTCCTCTCTTTCTGTTTAAACGCAAAATAGAGATGGTAATACACTATTATAAAAGTATTATGCTC
CGAATGAAAATATATACATCACCATTAAACAGAAAATTAACCAAATTTAAAAGTGGGTGCTAAAA
TGGCTGACAGTCCCCATGGACAAAAGGGTAGTATCACTAATATCA
Found at i:110807 original size:10 final size:10
Alignment explanation
Indices: 110792--110819 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
110782 TAAAATTCGA
110792 AGTGGTGATC
1 AGTGGTGATC
110802 AGTGGTGATC
1 AGTGGTGATC
110812 AGTGGTGA
1 AGTGGTGA
110820 CTAAGGTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.07, G:0.43, T:0.29
Consensus pattern (10 bp):
AGTGGTGATC
Left flanking sequence: Indices 110292 -- 110791
AAGTGGGTGCTAAAATGGCTGACAGTCCCCATGGACAAAAGGGTAGTATCACTAATATCAGAATA
CGCCAAAGAATTTTCAAACATGGATCTTCATATTGTGATATCTCTCTGTGATATCACCATATATT
GCTCCTGCAAGAATTAAAATTTTGTTGGAAAATGGGTATGTTTTAATTGTATGCTAAATCGTAGT
TACCAGTTGGACTGGATATTACGGGCCTGGTAGAAGATGGGGGTAGAAATAATGGGGCTGCGGTC
ACTGCATGGGTAGTTTGGGGTTGTAGTTATTAGGAAAACGGTTATTTGGCGGGCTGGTGGTTATT
GTGGAATTAGTGGTATTGTTCTGGCGTAGTTGGACCAGAGTTCGCTTTAGTTTCCACTACAAAGC
ACGTTACCAGGGAAAATGTGAAACCTCCATCCAGAGCTAGGAACTCTACGGAGCTGAAAACCGGG
TGATAAGATAGTGAAGTTGACCAAAAGTTTCTCATTAAAATTCGA
Right flanking sequence: Indices 110820 -- 111319
CTAAGGTACCGTCATGGTGGTAATTACGATAATTTTCTCACAACCATTTTGGCAGCCAACTACCT
AATCTTCGCCTGAATAGTAGTTATTTGATCACCAAGTACTACCATACGCCACATAAATTGCACTG
TCTGGAGACCAAAATAATCGCTTAGTTTCGCAACCGTTCCAAGAATTTTCGAGGCTTTGGCAAGT
GTACCTTTTTAGAAAACATCAGTGCCAAGTAGGGTCGGTGCATACGGCTCCAATTACACCAGTCA
TTGTTGCCTTTGTGGTGATTACATATTGATAATCAGCGGTTCATTGATATTCAGTGGTCTCACCA
GGTCGTCATGGTCGTCTTCGCCTGATCTCTCCTAGATAATGCACAATCCTAGCCCCATCTCCAGA
TAATGCCAGAAGCGGGTCCAGAAGCGGGTCAGAAGCGGGTCAGAAGTGGGGTAACCACCTGACCG
ACGCTAGCGGGAAGTGGGGTAATCACTGCCTACCGCACGCACAGT
Found at i:111244 original size:11 final size:11
Alignment explanation
Indices: 111216--111255 Score: 71
Period size: 11 Copynumber: 3.5 Consensus size: 11
111206 CAGATAATGC
111216 CAGAAGCGGGT
1 CAGAAGCGGGT
111227 CCAGAAGCGGGT
1 -CAGAAGCGGGT
111239 CAGAAGCGGGT
1 CAGAAGCGGGT
111250 CAGAAG
1 CAGAAG
111256 TGGGGTAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 17 0.61
12 11 0.39
ACGTcount: A:0.30, C:0.20, G:0.42, T:0.07
Consensus pattern (11 bp):
CAGAAGCGGGT
Left flanking sequence: Indices 110716 -- 111215
AGCTAGGAACTCTACGGAGCTGAAAACCGGGTGATAAGATAGTGAAGTTGACCAAAAGTTTCTCA
TTAAAATTCGAAGTGGTGATCAGTGGTGATCAGTGGTGACTAAGGTACCGTCATGGTGGTAATTA
CGATAATTTTCTCACAACCATTTTGGCAGCCAACTACCTAATCTTCGCCTGAATAGTAGTTATTT
GATCACCAAGTACTACCATACGCCACATAAATTGCACTGTCTGGAGACCAAAATAATCGCTTAGT
TTCGCAACCGTTCCAAGAATTTTCGAGGCTTTGGCAAGTGTACCTTTTTAGAAAACATCAGTGCC
AAGTAGGGTCGGTGCATACGGCTCCAATTACACCAGTCATTGTTGCCTTTGTGGTGATTACATAT
TGATAATCAGCGGTTCATTGATATTCAGTGGTCTCACCAGGTCGTCATGGTCGTCTTCGCCTGAT
CTCTCCTAGATAATGCACAATCCTAGCCCCATCTCCAGATAATGC
Right flanking sequence: Indices 111256 -- 111755
TGGGGTAACCACCTGACCGACGCTAGCGGGAAGTGGGGTAATCACTGCCTACCGCACGCACAGTG
CCCACCGGTGCGCTGCACCCCAGAGCACTACGCACATGTAGCCACGCCGTGCACACTTGCAGGGT
TTAGTCGTGCCACCACCTGTGGTCCACTCATGTACGTCGCCAGATTCCCGCGGGTGATCCATCAC
TCCTAGATCGATTTACGACGGCGGCGGTTGGTCGTAACCCTACCGCTTTGGGACACCGCGAAGCA
CCACAAAGCACTCGCACAATAGGGCCCATGCACGTCCTTCGCGAGAAGAAGGCGGCAGGCGGCGC
GAGCGACGATGGAGGCGCAGTGGCCCAGTGTCGTCGAAGTGTCGGCCATCTGTCCGACACCGTTG
CCTCCACCGTCGCAGACCTGTGCGAGATGGCGCCACCGAAGCCTACCAACACGGTGCCGAGCAAT
TTCTGTGCAGATACGAGTACCGCTCAAACGCCGAGCGGGGATCGG
Found at i:112140 original size:6 final size:5
Alignment explanation
Indices: 112126--112179 Score: 63
Period size: 5 Copynumber: 10.0 Consensus size: 5
112116 AGTGCGGTCA
112126 CGGTG CGGTG CCGGTG CGGTCG CGGTG CGGTG ACGGTG CGGTG ACGGTG
1 CGGTG CGGTG -CGGTG CGGT-G CGGTG CGGTG -CGGTG CGGTG -CGGTG
*
112175 AGGTG
1 CGGTG
112180 AGTTTCTTCG
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
5 24 0.55
6 20 0.45
ACGTcount: A:0.06, C:0.20, G:0.56, T:0.19
Consensus pattern (5 bp):
CGGTG
Left flanking sequence: Indices 111626 -- 112125
CCATCTGTCCGACACCGTTGCCTCCACCGTCGCAGACCTGTGCGAGATGGCGCCACCGAAGCCTA
CCAACACGGTGCCGAGCAATTTCTGTGCAGATACGAGTACCGCTCAAACGCCGAGCGGGGATCGG
CGACCGAAACAATTGGGCAGAATCATCCCATCCGTGTCCGGGTTCGCCAGGTCTAAACCTTGTTT
CGAATGGTGTTGGTCGGCTGTTTCTGCAGTACGATTAGTCTGTGTGCATGGGGCGTGGGTGGGGG
TGTGGTAGGGTGCGATCGCACCAGTGCGTGATTAGAGGAAGGGTACGGTTGAAGGGTAGAGGCGG
GTGGCTAGTCAGGGGAGCGTTAGAGTGCGGGGGAGGCGTTCAGGCGGAAGGCCAAGGTGCGTGGA
TCGAGGCGACGGATTAGCGGTGTTGTAATAATTGGGACAGAGAATATCGTGCGTGTGCAGAGGGT
TTTGTGGTGTCCTGTGAAGTCTGGTGGTGGGGGATAGTGCGGTCA
Right flanking sequence: Indices 112180 -- 112679
AGTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTCTTTGGCCAGCGTGAT
GTCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTCTTCTGTGGGTAATAT
TCTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATTAGTTGCGAGCCGC
CTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGTCGCATGTGTAATT
TCAAAAAGAGCTCTGTCTGCCCGTGGCCTTATACCCTGCCCGTGTGTCCTTTATACACTTTTGCT
CTTGTGCCCTGCCCGTGTGTCCTTTAAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGCT
CTTAGGCCTTTCTGTATGTCCTGTCTGCCTTTTGTCGGTCCTTCGTTTAGTGTTCTCTGTGTCTG
ATCGATGTGTCTGTGGGTGTTCTGATGTGTCTGTTGGTGCCCGTC
Found at i:112179 original size:11 final size:11
Alignment explanation
Indices: 112117--112180 Score: 85
Period size: 11 Copynumber: 5.8 Consensus size: 11
112107 GTGGGGGATA
*
112117 GTGCGGTCACG
1 GTGCGGTGACG
*
112128 GTGCGGTGCCG
1 GTGCGGTGACG
112139 GTGCGGTCG-CG
1 GTGCGGT-GACG
112150 GTGCGGTGACG
1 GTGCGGTGACG
112161 GTGCGGTGACG
1 GTGCGGTGACG
*
112172 GTGAGGTGA
1 GTGCGGTGA
112181 GTTTCTTCGC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
10 1 0.02
11 46 0.96
12 1 0.02
ACGTcount: A:0.08, C:0.20, G:0.53, T:0.19
Consensus pattern (11 bp):
GTGCGGTGACG
Left flanking sequence: Indices 111617 -- 112116
AAGTGTCGGCCATCTGTCCGACACCGTTGCCTCCACCGTCGCAGACCTGTGCGAGATGGCGCCAC
CGAAGCCTACCAACACGGTGCCGAGCAATTTCTGTGCAGATACGAGTACCGCTCAAACGCCGAGC
GGGGATCGGCGACCGAAACAATTGGGCAGAATCATCCCATCCGTGTCCGGGTTCGCCAGGTCTAA
ACCTTGTTTCGAATGGTGTTGGTCGGCTGTTTCTGCAGTACGATTAGTCTGTGTGCATGGGGCGT
GGGTGGGGGTGTGGTAGGGTGCGATCGCACCAGTGCGTGATTAGAGGAAGGGTACGGTTGAAGGG
TAGAGGCGGGTGGCTAGTCAGGGGAGCGTTAGAGTGCGGGGGAGGCGTTCAGGCGGAAGGCCAAG
GTGCGTGGATCGAGGCGACGGATTAGCGGTGTTGTAATAATTGGGACAGAGAATATCGTGCGTGT
GCAGAGGGTTTTGTGGTGTCCTGTGAAGTCTGGTGGTGGGGGATA
Right flanking sequence: Indices 112181 -- 112680
GTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTCTTTGGCCAGCGTGATG
TCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTCTTCTGTGGGTAATATT
CTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATTAGTTGCGAGCCGCC
TGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGTCGCATGTGTAATTT
CAAAAAGAGCTCTGTCTGCCCGTGGCCTTATACCCTGCCCGTGTGTCCTTTATACACTTTTGCTC
TTGTGCCCTGCCCGTGTGTCCTTTAAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGCTC
TTAGGCCTTTCTGTATGTCCTGTCTGCCTTTTGTCGGTCCTTCGTTTAGTGTTCTCTGTGTCTGA
TCGATGTGTCTGTGGGTGTTCTGATGTGTCTGTTGGTGCCCGTCG
Found at i:112524 original size:38 final size:37
Alignment explanation
Indices: 112473--112544 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 37
112463 TGGCCTTATA
112473 CCCTGCCCGTGTGTCCTTTATACACTTT-TGCTCTTGTG
1 CCCTGCCCGTGTGTCCTTTA-A-ACTTTATGCTCTTGTG
112511 CCCTGCCCGTGTGTCCTTTAAACTTTATGCTCTT
1 CCCTGCCCGTGTGTCCTTTAAACTTTATGCTCTT
112545 ACTCTTAGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
36 5 0.15
37 8 0.24
38 20 0.61
ACGTcount: A:0.10, C:0.32, G:0.17, T:0.42
Consensus pattern (37 bp):
CCCTGCCCGTGTGTCCTTTAAACTTTATGCTCTTGTG
Left flanking sequence: Indices 111973 -- 112472
GAGTGCGGGGGAGGCGTTCAGGCGGAAGGCCAAGGTGCGTGGATCGAGGCGACGGATTAGCGGTG
TTGTAATAATTGGGACAGAGAATATCGTGCGTGTGCAGAGGGTTTTGTGGTGTCCTGTGAAGTCT
GGTGGTGGGGGATAGTGCGGTCACGGTGCGGTGCCGGTGCGGTCGCGGTGCGGTGACGGTGCGGT
GACGGTGAGGTGAGTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTCTTT
GGCCAGCGTGATGTCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTCTTC
TGTGGGTAATATTCTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATTA
GTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGTC
GCATGTGTAATTTCAAAAAGAGCTCTGTCTGCCCGTGGCCTTATA
Right flanking sequence: Indices 112545 -- 113044
ACTCTTAGGCCTTTATGCTCTTGCTCTTAGGCCTTTCTGTATGTCCTGTCTGCCTTTTGTCGGTC
CTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGATGTGTCTGTTGGTGC
CCGTCGTGCCTGTTGTGCCCGACGTGCCCGACGTACCTGTTGTGCCCGACGCGCTGGTGCCCGAC
CTGCCTGTTGGTGCTCAGACGTGCCTACGAAGTCTCTCGATTTCTGTACTTTGGTATTTGCGGTG
TATCCAGTGTTTTCCACCAAGTGTTCTCGTAGCACCAAGTGTTTTCTCTACACCAAGTGTTCTCT
CTACACCAATTTTCTCTACACCAATTTTCTCTACACCAAGTTCCTCTCCACCAAGTTTCTCTCCA
CAAAGTTCCTCTCCACCAACCTCTCCACAAAGTTCCTCTCCACCAACCTCTCCACCAAGTTTCTC
TGCACCCGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACC
Found at i:112561 original size:22 final size:22
Alignment explanation
Indices: 112533--112580 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
112523 GTCCTTTAAA
112533 CTTTATGCTCTTACTCTTAGGC
1 CTTTATGCTCTTACTCTTAGGC
*
112555 CTTTATGCTCTTGCTCTTAGGC
1 CTTTATGCTCTTACTCTTAGGC
112577 CTTT
1 CTTT
112581 CTGTATGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.10, C:0.27, G:0.15, T:0.48
Consensus pattern (22 bp):
CTTTATGCTCTTACTCTTAGGC
Left flanking sequence: Indices 112033 -- 112532
CGGTGTTGTAATAATTGGGACAGAGAATATCGTGCGTGTGCAGAGGGTTTTGTGGTGTCCTGTGA
AGTCTGGTGGTGGGGGATAGTGCGGTCACGGTGCGGTGCCGGTGCGGTCGCGGTGCGGTGACGGT
GCGGTGACGGTGAGGTGAGTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTT
TCTTTGGCCAGCGTGATGTCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTT
TCTTCTGTGGGTAATATTCTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAAT
GATTAGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCA
GTGTCGCATGTGTAATTTCAAAAAGAGCTCTGTCTGCCCGTGGCCTTATACCCTGCCCGTGTGTC
CTTTATACACTTTTGCTCTTGTGCCCTGCCCGTGTGTCCTTTAAA
Right flanking sequence: Indices 112581 -- 113080
CTGTATGTCCTGTCTGCCTTTTGTCGGTCCTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTGTC
TGTGGGTGTTCTGATGTGTCTGTTGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGCCCGACGTAC
CTGTTGTGCCCGACGCGCTGGTGCCCGACCTGCCTGTTGGTGCTCAGACGTGCCTACGAAGTCTC
TCGATTTCTGTACTTTGGTATTTGCGGTGTATCCAGTGTTTTCCACCAAGTGTTCTCGTAGCACC
AAGTGTTTTCTCTACACCAAGTGTTCTCTCTACACCAATTTTCTCTACACCAATTTTCTCTACAC
CAAGTTCCTCTCCACCAAGTTTCTCTCCACAAAGTTCCTCTCCACCAACCTCTCCACAAAGTTCC
TCTCCACCAACCTCTCCACCAAGTTTCTCTGCACCCGTGTCTCACAATGGCTCCCCTGCTACACG
ATCTCAACCCTAGTGCATTGTCACCGCTTCCCCTCAACTAAAACT
Found at i:112694 original size:18 final size:19
Alignment explanation
Indices: 112665--112702 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
112655 TCTGATGTGT
*
112665 CTGTTGGTGCCCGTCGTGC
1 CTGTTGGTGCCCGACGTGC
112684 CTGTT-GTGCCCGACGTGC
1 CTGTTGGTGCCCGACGTGC
112702 C
1 C
112703 CGACGTACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.03, C:0.34, G:0.34, T:0.29
Consensus pattern (19 bp):
CTGTTGGTGCCCGACGTGC
Left flanking sequence: Indices 112165 -- 112664
GGTGACGGTGAGGTGAGTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTC
TTTGGCCAGCGTGATGTCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTC
TTCTGTGGGTAATATTCTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGA
TTAGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGT
GTCGCATGTGTAATTTCAAAAAGAGCTCTGTCTGCCCGTGGCCTTATACCCTGCCCGTGTGTCCT
TTATACACTTTTGCTCTTGTGCCCTGCCCGTGTGTCCTTTAAACTTTATGCTCTTACTCTTAGGC
CTTTATGCTCTTGCTCTTAGGCCTTTCTGTATGTCCTGTCTGCCTTTTGTCGGTCCTTCGTTTAG
TGTTCTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGATGTGT
Right flanking sequence: Indices 112703 -- 113202
CGACGTACCTGTTGTGCCCGACGCGCTGGTGCCCGACCTGCCTGTTGGTGCTCAGACGTGCCTAC
GAAGTCTCTCGATTTCTGTACTTTGGTATTTGCGGTGTATCCAGTGTTTTCCACCAAGTGTTCTC
GTAGCACCAAGTGTTTTCTCTACACCAAGTGTTCTCTCTACACCAATTTTCTCTACACCAATTTT
CTCTACACCAAGTTCCTCTCCACCAAGTTTCTCTCCACAAAGTTCCTCTCCACCAACCTCTCCAC
AAAGTTCCTCTCCACCAACCTCTCCACCAAGTTTCTCTGCACCCGTGTCTCACAATGGCTCCCCT
GCTACACGATCTCAACCCTAGTGCATTGTCACCGCTTCCCCTCAACTAAAACTCTAATTATAGCA
GAACAATGTGGGGCAGTGGTTCCCTGGCGAGCGAAGCCCGAGGTCACGGCCCGACGCACACCACG
AGATATATGCACCTCCAGTTTGTGGTGTTTCACCTCCATCAGATG
Found at i:112701 original size:27 final size:27
Alignment explanation
Indices: 112671--112725 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
112661 GTGTCTGTTG
* *
112671 GTGCCCGTCGTGCCTGTTGTGCCCGAC
1 GTGCCCGACGTACCTGTTGTGCCCGAC
112698 GTGCCCGACGTACCTGTTGTGCCCGAC
1 GTGCCCGACGTACCTGTTGTGCCCGAC
112725 G
1 G
112726 CGCTGGTGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.07, C:0.36, G:0.33, T:0.24
Consensus pattern (27 bp):
GTGCCCGACGTACCTGTTGTGCCCGAC
Left flanking sequence: Indices 112171 -- 112670
GGTGAGGTGAGTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTCTTTGGC
CAGCGTGATGTCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTCTTCTGT
GGGTAATATTCTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATTAGTT
GCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGTCGCA
TGTGTAATTTCAAAAAGAGCTCTGTCTGCCCGTGGCCTTATACCCTGCCCGTGTGTCCTTTATAC
ACTTTTGCTCTTGTGCCCTGCCCGTGTGTCCTTTAAACTTTATGCTCTTACTCTTAGGCCTTTAT
GCTCTTGCTCTTAGGCCTTTCTGTATGTCCTGTCTGCCTTTTGTCGGTCCTTCGTTTAGTGTTCT
CTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGATGTGTCTGTTG
Right flanking sequence: Indices 112726 -- 113225
CGCTGGTGCCCGACCTGCCTGTTGGTGCTCAGACGTGCCTACGAAGTCTCTCGATTTCTGTACTT
TGGTATTTGCGGTGTATCCAGTGTTTTCCACCAAGTGTTCTCGTAGCACCAAGTGTTTTCTCTAC
ACCAAGTGTTCTCTCTACACCAATTTTCTCTACACCAATTTTCTCTACACCAAGTTCCTCTCCAC
CAAGTTTCTCTCCACAAAGTTCCTCTCCACCAACCTCTCCACAAAGTTCCTCTCCACCAACCTCT
CCACCAAGTTTCTCTGCACCCGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACCCTAGTG
CATTGTCACCGCTTCCCCTCAACTAAAACTCTAATTATAGCAGAACAATGTGGGGCAGTGGTTCC
CTGGCGAGCGAAGCCCGAGGTCACGGCCCGACGCACACCACGAGATATATGCACCTCCAGTTTGT
GGTGTTTCACCTCCATCAGATGAGCTCGGCAGCCCGTGCTGCCAA
Found at i:112842 original size:18 final size:16
Alignment explanation
Indices: 112819--112953 Score: 109
Period size: 15 Copynumber: 8.4 Consensus size: 16
112809 CAGTGTTTTC
112819 CACCAAGTGTTCTCGTA
1 CACCAAGTGTTCTC-TA
112836 GCACCAAGTGTTTTCTCTA
1 -CACCAAGTG--TTCTCTA
112855 CACCAAGTGTTCTCTCTA
1 CACCAAGTG-T-TCTCTA
*
112873 CACCAA-TTTTCTCTA
1 CACCAAGTGTTCTCTA
*
112888 CACCAA-TTTTCTCTA
1 CACCAAGTGTTCTCTA
* *
112903 CACCAAGT-TCCTCTC
1 CACCAAGTGTTCTCTA
*
112918 CACCAAGT-TTCTCTC
1 CACCAAGTGTTCTCTA
* * *
112933 CACAAAGT-TCCTCTC
1 CACCAAGTGTTCTCTA
112948 CACCAA
1 CACCAA
112954 CCTCTCCACA
Statistics
Matches: 106, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
15 64 0.60
16 2 0.02
17 3 0.03
18 30 0.28
19 2 0.02
20 5 0.05
ACGTcount: A:0.24, C:0.36, G:0.08, T:0.32
Consensus pattern (16 bp):
CACCAAGTGTTCTCTA
Left flanking sequence: Indices 112319 -- 112818
AGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATTAGTTGCGAGCCGCCTGGGGTTA
GGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGTCGCATGTGTAATTTCAAAAAGA
GCTCTGTCTGCCCGTGGCCTTATACCCTGCCCGTGTGTCCTTTATACACTTTTGCTCTTGTGCCC
TGCCCGTGTGTCCTTTAAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGCTCTTAGGCCT
TTCTGTATGTCCTGTCTGCCTTTTGTCGGTCCTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTG
TCTGTGGGTGTTCTGATGTGTCTGTTGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGCCCGACGT
ACCTGTTGTGCCCGACGCGCTGGTGCCCGACCTGCCTGTTGGTGCTCAGACGTGCCTACGAAGTC
TCTCGATTTCTGTACTTTGGTATTTGCGGTGTATCCAGTGTTTTC
Right flanking sequence: Indices 112954 -- 113453
CCTCTCCACAAAGTTCCTCTCCACCAACCTCTCCACCAAGTTTCTCTGCACCCGTGTCTCACAAT
GGCTCCCCTGCTACACGATCTCAACCCTAGTGCATTGTCACCGCTTCCCCTCAACTAAAACTCTA
ATTATAGCAGAACAATGTGGGGCAGTGGTTCCCTGGCGAGCGAAGCCCGAGGTCACGGCCCGACG
CACACCACGAGATATATGCACCTCCAGTTTGTGGTGTTTCACCTCCATCAGATGAGCTCGGCAGC
CCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCCTGTGCAGCGGGCGTGCTTGGTGCCCCTCCA
GCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGCATGTGTATGCACGGGTGGGGTGGCAGCGAA
CCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTTAACCCGAGGGTTTGGGTGGTCCAGGTGCAG
TTTGCCATCGAAAAAGCTTAATCGGGATCGCCATCACATGGTGGC
Found at i:112932 original size:15 final size:15
Alignment explanation
Indices: 112847--113005 Score: 132
Period size: 15 Copynumber: 10.8 Consensus size: 15
112837 CACCAAGTGT
*
112847 TTTCTCTACACCAAG
1 TTTCTCTCCACCAAG
*
112862 TGTTCTCTCTACACCAAT
1 T-TTCTCTC--CACCAAG
* *
112880 TTTCTCTACACCAAT
1 TTTCTCTCCACCAAG
*
112895 TTTCTCTACACCAAG
1 TTTCTCTCCACCAAG
*
112910 TTCCTCTCCACCAAG
1 TTTCTCTCCACCAAG
*
112925 TTTCTCTCCACAAAG
1 TTTCTCTCCACCAAG
*
112940 TTCCTCTCCACCAA-
1 TTTCTCTCCACCAAG
* *
112954 --CCTCTCCACAAAG
1 TTTCTCTCCACCAAG
*
112967 TTCCTCTCCACCAA-
1 TTTCTCTCCACCAAG
*
112981 --CCTCTCCACCAAG
1 TTTCTCTCCACCAAG
*
112994 TTTCTCTGCACC
1 TTTCTCTCCACC
113006 CGTGTCTCAC
Statistics
Matches: 121, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
12 23 0.19
15 79 0.65
16 6 0.05
17 6 0.05
18 7 0.06
ACGTcount: A:0.23, C:0.41, G:0.05, T:0.31
Consensus pattern (15 bp):
TTTCTCTCCACCAAG
Left flanking sequence: Indices 112347 -- 112846
GTCCACGCAATGATTAGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTG
GTACGTTCTCAGTGTCGCATGTGTAATTTCAAAAAGAGCTCTGTCTGCCCGTGGCCTTATACCCT
GCCCGTGTGTCCTTTATACACTTTTGCTCTTGTGCCCTGCCCGTGTGTCCTTTAAACTTTATGCT
CTTACTCTTAGGCCTTTATGCTCTTGCTCTTAGGCCTTTCTGTATGTCCTGTCTGCCTTTTGTCG
GTCCTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGATGTGTCTGTTGG
TGCCCGTCGTGCCTGTTGTGCCCGACGTGCCCGACGTACCTGTTGTGCCCGACGCGCTGGTGCCC
GACCTGCCTGTTGGTGCTCAGACGTGCCTACGAAGTCTCTCGATTTCTGTACTTTGGTATTTGCG
GTGTATCCAGTGTTTTCCACCAAGTGTTCTCGTAGCACCAAGTGT
Right flanking sequence: Indices 113006 -- 113505
CGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACCCTAGTGCATTGTCACCGCTTCCCCTC
AACTAAAACTCTAATTATAGCAGAACAATGTGGGGCAGTGGTTCCCTGGCGAGCGAAGCCCGAGG
TCACGGCCCGACGCACACCACGAGATATATGCACCTCCAGTTTGTGGTGTTTCACCTCCATCAGA
TGAGCTCGGCAGCCCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCCTGTGCAGCGGGCGTGCT
TGGTGCCCCTCCAGCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGCATGTGTATGCACGGGTG
GGGTGGCAGCGAACCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTTAACCCGAGGGTTTGGGT
GGTCCAGGTGCAGTTTGCCATCGAAAAAGCTTAATCGGGATCGCCATCACATGGTGGCGAACTTT
ATGCAAGATAGCCAGCACCAATGGGCACCCTGCTCGCTACCAGCG
Found at i:112959 original size:12 final size:12
Alignment explanation
Indices: 112942--112992 Score: 66
Period size: 12 Copynumber: 4.0 Consensus size: 12
112932 CCACAAAGTT
112942 CCTCTCCACCAA
1 CCTCTCCACCAA
*
112954 CCTCTCCACAAA
1 CCTCTCCACCAA
112966 GTTCCTCTCCACCAA
1 ---CCTCTCCACCAA
112981 CCTCTCCACCAA
1 CCTCTCCACCAA
112993 GTTTCTCTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 23 0.68
15 11 0.32
ACGTcount: A:0.25, C:0.53, G:0.02, T:0.20
Consensus pattern (12 bp):
CCTCTCCACCAA
Left flanking sequence: Indices 112442 -- 112941
AAAAAGAGCTCTGTCTGCCCGTGGCCTTATACCCTGCCCGTGTGTCCTTTATACACTTTTGCTCT
TGTGCCCTGCCCGTGTGTCCTTTAAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGCTCT
TAGGCCTTTCTGTATGTCCTGTCTGCCTTTTGTCGGTCCTTCGTTTAGTGTTCTCTGTGTCTGAT
CGATGTGTCTGTGGGTGTTCTGATGTGTCTGTTGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGC
CCGACGTACCTGTTGTGCCCGACGCGCTGGTGCCCGACCTGCCTGTTGGTGCTCAGACGTGCCTA
CGAAGTCTCTCGATTTCTGTACTTTGGTATTTGCGGTGTATCCAGTGTTTTCCACCAAGTGTTCT
CGTAGCACCAAGTGTTTTCTCTACACCAAGTGTTCTCTCTACACCAATTTTCTCTACACCAATTT
TCTCTACACCAAGTTCCTCTCCACCAAGTTTCTCTCCACAAAGTT
Right flanking sequence: Indices 112993 -- 113492
GTTTCTCTGCACCCGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACCCTAGTGCATTGTC
ACCGCTTCCCCTCAACTAAAACTCTAATTATAGCAGAACAATGTGGGGCAGTGGTTCCCTGGCGA
GCGAAGCCCGAGGTCACGGCCCGACGCACACCACGAGATATATGCACCTCCAGTTTGTGGTGTTT
CACCTCCATCAGATGAGCTCGGCAGCCCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCCTGTG
CAGCGGGCGTGCTTGGTGCCCCTCCAGCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGCATGT
GTATGCACGGGTGGGGTGGCAGCGAACCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTTAACC
CGAGGGTTTGGGTGGTCCAGGTGCAGTTTGCCATCGAAAAAGCTTAATCGGGATCGCCATCACAT
GGTGGCGAACTTTATGCAAGATAGCCAGCACCAATGGGCACCCTG
Done.