sallet_2.scaffold.fasta.s48.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold42
Parameters: 2 7 7 80 10 50 500
Length:  183096

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34--137	6	16.0	6	83	15	127	0	0	49	50	1.07
34--158	26	4.5	26	81	15	142	1	0	46	52	1.10
30--152	40	3.0	40	93	1	201	1	0	47	51	1.10
35--158	6	21.3	6	86	6	76	1	0	45	52	1.10
11551--11961	141	2.9	141	91	1	646	25	27	27	19	1.99
12076--12387	147	2.1	147	92	1	527	27	26	24	21	1.99
16373--16791	141	2.9	143	79	2	410	30	29	23	16	1.96
18332--18432	24	4.2	24	77	5	96	31	27	32	7	1.86
18704--18809	21	5.0	21	83	0	122	31	21	35	11	1.89
20071--20119	22	2.3	22	86	6	66	20	65	2	12	1.35
20171--20198	11	2.5	11	100	0	56	10	57	17	14	1.65
21746--21783	15	2.5	15	91	0	58	55	0	44	0	0.99
21746--21804	18	3.3	18	79	13	59	52	0	42	5	1.23
21746--21805	21	2.9	21	82	9	61	51	0	41	6	1.28
21899--21931	15	2.2	15	94	0	57	39	30	12	18	1.87
22598--22628	6	5.2	6	92	0	53	32	12	35	19	1.90
22622--22683	21	3.0	21	73	7	63	35	12	27	24	1.92
22835--22898	21	3.2	20	82	12	78	28	35	18	17	1.93
23071--23113	21	2.0	23	86	9	63	4	39	37	18	1.72
23698--23738	21	2.0	21	85	9	57	0	24	51	24	1.49
23900--23936	15	2.5	14	87	12	56	35	16	21	27	1.94
28269--28302	14	2.3	15	90	10	61	35	5	41	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28380--28404	13	1.9	13	100	0	50	40	16	32	12	1.84
29795--29831	16	2.3	16	85	0	56	32	40	8	18	1.80
29842--29881	21	1.9	21	100	0	80	7	45	10	37	1.66
29957--30003	12	3.8	12	80	2	58	36	25	14	23	1.93
31080--31128	21	2.3	21	78	0	53	8	32	10	48	1.66
31479--31509	12	2.5	12	94	5	53	9	54	12	22	1.67
32016--32061	13	3.5	13	90	3	74	0	36	23	39	1.55
33376--33419	12	3.8	12	96	3	81	18	27	38	15	1.91
33625--33726	31	3.4	31	81	14	115	28	23	12	35	1.92
33873--33989	8	15.4	8	70	10	75	23	47	3	25	1.68
33889--33989	15	6.7	15	70	4	78	24	48	1	24	1.62
33960--34003	15	2.9	15	72	0	52	27	54	0	18	1.44
34191--34256	32	2.1	32	85	5	89	13	39	3	43	1.60
36229--36280	14	3.7	14	92	0	77	13	21	40	25	1.89
36257--36294	14	2.7	14	91	0	58	13	18	39	28	1.88
36331--36362	14	2.3	14	94	0	55	21	15	50	12	1.77
36788--36921	9	15.2	9	64	21	52	64	11	19	3	1.41
36848--36906	28	2.1	28	90	6	93	67	13	15	3	1.35
36845--36902	14	4.1	14	84	6	82	68	15	13	1	1.28
37647--37676	14	2.1	14	100	0	60	80	13	6	0	0.91
39079--39106	11	2.5	11	100	0	56	25	32	32	10	1.90
39389--39476	19	4.6	19	88	0	131	26	30	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39389--39476	38	2.3	38	92	0	149	26	30	21	21	1.98
40955--41030	21	3.6	21	82	3	82	21	10	64	3	1.41
42082--42121	13	3.1	13	85	0	53	40	37	5	17	1.72
42097--42160	23	2.7	24	78	9	69	34	46	6	12	1.67
42325--42364	7	5.6	7	91	5	62	12	60	10	17	1.59
42473--42518	22	2.1	21	92	7	83	17	67	13	0	1.21
42529--42563	13	2.7	13	90	0	61	31	65	2	0	1.07
45322--45392	35	2.0	36	83	8	92	36	5	32	25	1.79
45460--45503	16	2.6	18	82	14	65	18	6	38	36	1.77
48112--48158	11	4.4	11	78	2	51	61	25	10	2	1.39
48141--48288	10	14.8	10	77	15	139	62	26	1	10	1.35
48380--48410	13	2.4	13	94	0	53	25	58	9	6	1.54
48390--48423	16	2.2	15	94	5	59	32	58	2	5	1.37
50122--50149	12	2.3	12	100	0	56	7	39	39	14	1.73
51254--51365	15	7.5	15	66	19	56	30	5	38	25	1.78
51398--51431	17	2.0	17	94	0	59	29	8	38	23	1.85
52080--52183	21	4.7	21	69	11	73	31	24	20	24	1.98
52070--52177	33	3.2	33	69	10	101	33	22	20	24	1.97
53969--54063	30	3.2	30	87	0	136	11	25	42	21	1.86
53969--54088	15	8.0	15	74	3	89	10	25	40	22	1.86
54067--54157	24	3.9	24	81	8	107	13	28	40	17	1.87
54067--54160	45	2.0	47	85	6	129	13	27	41	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54150--54202	9	5.9	9	95	0	88	20	30	33	15	1.93
54324--54370	18	2.6	18	82	0	58	17	55	27	0	1.42
54324--54379	27	2.1	27	86	0	76	19	51	28	0	1.47
54427--54467	21	2.0	21	85	9	57	19	39	29	12	1.88
55074--55110	15	2.5	15	90	0	56	2	5	37	54	1.38
55886--55947	24	2.6	24	81	0	70	25	24	24	25	2.00
57490--57579	15	6.0	15	92	0	135	2	20	55	22	1.54
57491--57580	45	2.0	45	93	0	153	2	21	55	21	1.54
59198--59258	8	7.6	8	96	0	113	39	9	50	0	1.35
59198--59265	16	4.3	16	96	1	111	41	8	50	0	1.34
60048--60072	13	1.9	13	100	0	50	0	40	12	48	1.40
62387--62456	14	5.1	14	82	1	88	44	18	18	18	1.87
68630--68709	22	3.5	22	83	9	108	33	42	5	18	1.72
70957--70996	19	2.0	21	85	14	57	40	2	57	0	1.12
71344--71386	11	4.0	11	93	6	79	9	53	0	37	1.33
71344--71383	21	1.9	21	100	0	80	7	55	0	37	1.29
72619--72648	15	2.0	15	100	0	60	13	40	0	46	1.43
76889--76935	12	3.9	12	82	0	67	36	40	14	8	1.77
76891--76942	12	4.3	12	80	0	59	34	40	17	7	1.78
93616--93642	12	2.2	12	100	0	54	18	44	0	37	1.50
96957--96986	14	2.1	14	100	0	60	26	53	13	6	1.64
101769--101805	19	1.9	19	88	0	56	16	37	5	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103955--103990	10	3.7	10	88	3	56	22	11	61	5	1.50
115207--115300	25	3.8	25	91	0	143	29	1	43	25	1.62
117458--117546	8	11.2	8	70	2	63	29	6	46	17	1.74
117475--117512	15	2.4	16	86	4	51	26	10	50	13	1.73
117458--117546	16	5.6	16	79	2	90	29	6	46	17	1.74
119545--119612	19	3.6	19	95	0	118	16	38	38	7	1.76
121021--121107	45	1.9	46	90	2	140	19	20	25	34	1.96
121019--121107	23	4.0	22	85	4	124	20	20	25	33	1.97
121148--121177	14	2.1	14	93	0	51	16	26	23	33	1.96
132092--132116	13	1.9	13	100	0	50	8	48	8	36	1.62
134204--134272	27	2.6	27	86	4	95	34	21	34	8	1.84
134195--134272	15	5.6	14	73	20	58	35	20	34	8	1.84
134257--134290	9	3.8	9	96	0	59	32	26	32	8	1.87
136297--136330	17	2.0	17	88	11	52	32	17	23	26	1.97
145639--145680	16	2.6	16	88	0	57	16	61	16	4	1.50
145670--145709	11	3.5	12	81	18	50	30	62	7	0	1.23
157722--157748	6	4.5	6	100	0	54	0	33	51	14	1.43
173773--173804	9	3.6	9	95	0	55	25	46	28	0	1.53

Tables:   1

The End!