Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold42
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 183096
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:45 original size:6 final size:6
Alignment explanation
Indices: 34--137 Score: 127
Period size: 6 Copynumber: 16.0 Consensus size: 6
24 TCATTCTGGT
34 GTGTTG GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTGG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTT-G
*
87 TGTGTTG GTGTTG ATGTTG GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTTG
1 -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTTG
138 TTGATGTTGT
Statistics
Matches: 88, Mismatches: 2, Indels: 16
0.83 0.02 0.15
Matches are distributed among these distances:
6 60 0.68
7 8 0.09
8 20 0.23
ACGTcount: A:0.01, C:0.00, G:0.49, T:0.50
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 1 -- 33
GTACTAGTGGTGTCACCCCCTTTTCATTCTGGT
Right flanking sequence: Indices 138 -- 637
TTGATGTTGTTGTTGTTGTTGCTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCC
CTGTTGGTGGTGTCAGTGGTTCCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTT
CCCCCTGTTGGTGGTGCCATTGGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGG
TGCGCCTTCGGGGTAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTAGGGGCTTATATTGTAG
TATATAGATATATACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAATCACGTG
ACATTTATCACATGTGTTCTTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTA
ATGCTCGTAAAGTCTTCTACCAATAGTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAA
GGTGAGGGGACCGTTCTATCCTCTAACAAGTTAAATTATGTAATA
Found at i:68 original size:26 final size:26
Alignment explanation
Indices: 34--158 Score: 142
Period size: 26 Copynumber: 4.5 Consensus size: 26
24 TCATTCTGGT
34 GTGTTGGTGTTGGTGTGTTGGTGTTG
1 GTGTTGGTGTTGGTGTGTTGGTGTTG
60 GTGTTGGTGTTGGTGTGTTGGTGTTGG
1 GTGTTGGTGTTGGTGTGTTGGTGTT-G
87 TGTGTTGGTGTTGATGTTGGTGTTGGTGTGTTG
1 -GTGTTGGTGTTG--G-T-GTGTT-G-GTGTTG
*
120 GTGTTGGTGTTGGTGTTGTTGATGTTG
1 GTGTTGGTGTTGGTG-TGTTGGTGTTG
* *
147 TTGTTGTTGTTG
1 GTGTTGGTGTTG
159 CTGGTCGCTG
Statistics
Matches: 87, Mismatches: 3, Indels: 17
0.81 0.03 0.16
Matches are distributed among these distances:
26 25 0.29
27 16 0.18
28 14 0.16
29 5 0.06
30 2 0.02
31 1 0.01
32 17 0.20
33 2 0.02
34 5 0.06
ACGTcount: A:0.02, C:0.00, G:0.46, T:0.52
Consensus pattern (26 bp):
GTGTTGGTGTTGGTGTGTTGGTGTTG
Left flanking sequence: Indices 1 -- 33
GTACTAGTGGTGTCACCCCCTTTTCATTCTGGT
Right flanking sequence: Indices 159 -- 658
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTT
CCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTAGGGGCTTATATTGTAGTATATAGATATATACAGGTTC
GCCATAATCAACGCTATCTACGGTATCAACAGTAAAATCACGTGACATTTATCACATGTGTTCTT
GAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTTCTACC
AATAGTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATCC
TCTAACAAGTTAAATTATGTAATACAAATTTAGTTGGAATAGTCA
Found at i:75 original size:40 final size:40
Alignment explanation
Indices: 30--152 Score: 201
Period size: 40 Copynumber: 3.0 Consensus size: 40
20 CTTTTCATTC
*
30 TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGGTGTTGGTGT
1 TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGATGTTGGTGT
70 TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGATGTTGGTGT
1 TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGATGTTGGTGT
* * *
110 TGGTGTGTTGGTGTTGGTGTTGGTGTTGTTGATGTTGTTGT
1 TGGTGTGTTGGTGTTGGTG-TGTTGGTGTTGATGTTGGTGT
151 TG
1 TG
153 TTGTTGCTGG
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
40 58 0.74
41 20 0.26
ACGTcount: A:0.02, C:0.00, G:0.47, T:0.51
Consensus pattern (40 bp):
TGGTGTGTTGGTGTTGGTGTGTTGGTGTTGATGTTGGTGT
Left flanking sequence: Indices 1 -- 29
GTACTAGTGGTGTCACCCCCTTTTCATTC
Right flanking sequence: Indices 153 -- 652
TTGTTGCTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCA
GTGGTTCCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGT
GCCATTGGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTA
GCCTGCATGAGCGGGCTACCCTGAAGCCGTACTAGGGGCTTATATTGTAGTATATAGATATATAC
AGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAATCACGTGACATTTATCACATGT
GTTCTTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCT
TCTACCAATAGTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTT
CTATCCTCTAACAAGTTAAATTATGTAATACAAATTTAGTTGGAA
Found at i:145 original size:6 final size:6
Alignment explanation
Indices: 35--158 Score: 76
Period size: 6 Copynumber: 21.3 Consensus size: 6
25 CATTCTGGTG
* * * * * * *
35 TGTTGG TGTTGG TG-TGT TGGTGT TGGTGT TGGTGT TGGTG- TGTTGG
1 TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT
* * * * * * *
81 TGTTGG TG-TGT TGGTGT TGATGT TGGTGT TGGTG- TGTTGG TGTTGG
1 TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT
* *
127 TGTTGG TGTTGT TGATGT TGTTGT TGTTGT TG
1 TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TG
159 CTGGTCGCTG
Statistics
Matches: 105, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
5 16 0.15
6 89 0.85
ACGTcount: A:0.02, C:0.00, G:0.46, T:0.52
Consensus pattern (6 bp):
TGTTGT
Left flanking sequence: Indices 1 -- 34
GTACTAGTGGTGTCACCCCCTTTTCATTCTGGTG
Right flanking sequence: Indices 159 -- 658
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTT
CCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTAGGGGCTTATATTGTAGTATATAGATATATACAGGTTC
GCCATAATCAACGCTATCTACGGTATCAACAGTAAAATCACGTGACATTTATCACATGTGTTCTT
GAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTATGTAATGCTCGTAAAGTCTTCTACC
AATAGTAGTGAACCGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATCC
TCTAACAAGTTAAATTATGTAATACAAATTTAGTTGGAATAGTCA
Found at i:11756 original size:141 final size:141
Alignment explanation
Indices: 11551--11961 Score: 646
Period size: 141 Copynumber: 2.9 Consensus size: 141
11541 CGTGACTGCT
* * *** * * *
11551 ACGGACTCTGGAGTGATTGTGGTGACCACTGACGAAGAAGGTGTGCT-TACCACCACAACGTCGG
1 ACGGACTCTGGAGTGATTGTGGTGACTACTGACGAGGAAGGACAGCTCT-CCACAACCACATCGG
11615 TGTTTCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACTTGGACCACCACGGACGAA
65 TGTTTCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACTTGGACCACCACGGACGAA
11680 GAGGGGACTCAC
130 GAGGGGACTCAC
*
11692 ACGGACTCTGGAGTGATTGTGGTGACTACTGACGAGGATGGACAGCTCTCCACAACCACATCGGT
1 ACGGACTCTGGAGTGATTGTGGTGACTACTGACGAGGAAGGACAGCTCTCCACAACCACATCGGT
* * *
11757 GTTTCCACGGCCTACTTGCGAGGAGTGTACCACGTTTACCACTACTTGGACCACCACGGACGAAG
66 GTTTCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACTTGGACCACCACGGACGAAG
11822 AGGGGACTCAC
131 AGGGGACTCAC
*
11833 ACGGACTCTGGAGTGATTGTGGTGACTACTGACGAGGAAGAACAGCTCTCCACAACCACATTC-G
1 ACGGACTCTGGAGTGATTGTGGTGACTACTGACGAGGAAGGACAGCTCTCCACAACCACA-TCGG
** *
11897 TGTACCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGACGAA
65 TGTTTCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACTTGGACCACCACGGACGAA
11962 CAAGGCCAAA
Statistics
Matches: 248, Mismatches: 20, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
141 245 0.99
142 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.20
Consensus pattern (141 bp):
ACGGACTCTGGAGTGATTGTGGTGACTACTGACGAGGAAGGACAGCTCTCCACAACCACATCGGT
GTTTCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACTTGGACCACCACGGACGAAG
AGGGGACTCAC
Left flanking sequence: Indices 11051 -- 11550
CCGGGTGCTTTCATGTCATGAACGGTAGTATCTTCGAGCCCAGCACATTCAATCAAATCGAGCAA
ACAGTACAATTCTACCCTGATTTCTTTGGTACAATGTTACTTGAACCTCCTTATACAGATTTCTT
TGACCCCAGCCTTTTAAAAGTGCGAGGTTTCGGCCATGGGAACGCTATTGGTGTAAGAATGGGGC
AAAGAATTGAGAGTTTTGAATACTCTGGTTCAATGTTGACTATCAGCACTGGTTATGATCTGGTG
TATGCAAACATAGGTGAAGGCTATGATGAGTCGTTATTCCGGGTTGCCGACTTTGATGATTCTGG
GTACGTTTCTGAGAATCAAATTGTCATGTACGATGGCCCGGTACCTGAAGGGTTAGAATGGGCCG
CAAACTGTAATCCGTGTCCACCTCGTCAGGAGGCGCCACTGGAGGTACCTTGTGAAGAGTGCACC
ACTTTTACTTCGACGTGGGTCACAACTGAAGACGACGTGACTGCT
Right flanking sequence: Indices 11962 -- 12461
CAAGGCCAAAGCCAGACCGAATCTGGGGTGATAGGGGTGACCACCGATGAGCAGGGCCAGCTCAG
CACCACCACATCGGTGTTTCCTCAGCCAACACCAATTGAATGCGAGGGATGTACTGAGTTTACAA
CCACCTTTACCACTACGGACCAAGAAGGAGCCACTCGAACGGACTCTGTGGTTGTTATTGTGACC
ACCGACGAAGAAGGCGCGTTGTCGACCACTACGTCGATATTCCCCGATATTGAAGAGTGTCCAGA
GTGTACCGAGTTTACGACTACATTCACCACCACGGACCAAGAAGGAGCCACTCGAACGGACTCTG
GGATAGTTATAGTGACCACCGACGAAGAAGGCGCGTTATCGACCACTACGTCGATATTCCCCGAT
ATTGAAGAGTGTCCAGAGTGTACCGAGTTTACGACCGAGTGGATCACATCTGACGAAGGGACCGT
TCAAACGGACTCCGGCGTGGTCGTAGTGACCACGGACCCCGAGGG
Found at i:12260 original size:147 final size:147
Alignment explanation
Indices: 12076--12387 Score: 527
Period size: 147 Copynumber: 2.1 Consensus size: 147
12066 ATGCGAGGGA
* * * * *
12076 TGTACTGAGTTTACAACCACCTTTACCACTACGGACCAAGAAGGAGCCACTCGAACGGACTCTGT
1 TGTACCGAGTTTACGACCACATTCACCACCACGGACCAAGAAGGAGCCACTCGAACGGACTCTG-
* * *
12141 GG-TTGTTATTGTGACCACCGACGAAGAAGGCGCGTTGTCGACCACTACGTCGATATTCCCCGAT
65 GGATAGTTATAGTGACCACCGACGAAGAAGGCGCGTTATCGACCACTACGTCGATATTCCCCGAT
12205 ATTGAAGAGTGTCCAGAG
130 ATTGAAGAGTGTCCAGAG
*
12223 TGTACCGAGTTTACGACTACATTCACCACCACGGACCAAGAAGGAGCCACTCGAACGGACTCTGG
1 TGTACCGAGTTTACGACCACATTCACCACCACGGACCAAGAAGGAGCCACTCGAACGGACTCTGG
12288 GATAGTTATAGTGACCACCGACGAAGAAGGCGCGTTATCGACCACTACGTCGATATTCCCCGATA
66 GATAGTTATAGTGACCACCGACGAAGAAGGCGCGTTATCGACCACTACGTCGATATTCCCCGATA
12353 TTGAAGAGTGTCCAGAG
131 TTGAAGAGTGTCCAGAG
12370 TGTACCGAGTTTACGACC
1 TGTACCGAGTTTACGACC
12388 GAGTGGATCA
Statistics
Matches: 154, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
146 2 0.01
147 152 0.99
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (147 bp):
TGTACCGAGTTTACGACCACATTCACCACCACGGACCAAGAAGGAGCCACTCGAACGGACTCTGG
GATAGTTATAGTGACCACCGACGAAGAAGGCGCGTTATCGACCACTACGTCGATATTCCCCGATA
TTGAAGAGTGTCCAGAG
Left flanking sequence: Indices 11576 -- 12075
CCACTGACGAAGAAGGTGTGCTTACCACCACAACGTCGGTGTTTCCACGGCCTACGTGCGAGGAG
TGTACGACATTTACCACTACTTGGACCACCACGGACGAAGAGGGGACTCACACGGACTCTGGAGT
GATTGTGGTGACTACTGACGAGGATGGACAGCTCTCCACAACCACATCGGTGTTTCCACGGCCTA
CTTGCGAGGAGTGTACCACGTTTACCACTACTTGGACCACCACGGACGAAGAGGGGACTCACACG
GACTCTGGAGTGATTGTGGTGACTACTGACGAGGAAGAACAGCTCTCCACAACCACATTCGTGTA
CCCACGGCCTACGTGCGAGGAGTGTACGACATTTACCACTACCTGGACCACCACGGACGAACAAG
GCCAAAGCCAGACCGAATCTGGGGTGATAGGGGTGACCACCGATGAGCAGGGCCAGCTCAGCACC
ACCACATCGGTGTTTCCTCAGCCAACACCAATTGAATGCGAGGGA
Right flanking sequence: Indices 12388 -- 12887
GAGTGGATCACATCTGACGAAGGGACCGTTCAAACGGACTCCGGCGTGGTCGTAGTGACCACGGA
CCCCGAGGGAAATTTGAGTACTACCACGTCGGTATTCCCCCGGCCAACGGACCCGTTTACCACGT
TCACCACCACGTGGACTACAACCAGGGACGATGGGGGTATTGTAACAGACTCAGGTGTGGTTATC
GTCACTACAGACGAAGAAGGCGGGACTACCACTACCACATCTCGGTTTCCTGAAGACGGGCTAAC
CACGTACACCACGACATGGACCACAACTAGAGAAGACGGCCAATCTGTGACAAAATCGGGAGTGG
TTGGGGTGACTACCGACGAACAAGGCCAGCAGACCACGACGACGTCGGTGTTCCCTGATCCCGCG
TGTCCTGAGTGCACTGAGTTTACCAGTACGTGGACCACGAACGAGGAAGGCACTATTATTACAGA
CTCCGGGGTGATCGTTGTAACCACAGATGATGCCGGGGTCTTGAC
Found at i:16680 original size:141 final size:143
Alignment explanation
Indices: 16373--16791 Score: 410
Period size: 141 Copynumber: 2.9 Consensus size: 143
16363 ACAGCTCTCC
* * * * * * *
16373 ACAACCACATCGGTGTTTCCACGGCCCACATGCGAAGAGTGTACCACGTTTACCACTACTTGGAC
1 ACAACCACCTCGGTGTTTCCACAGCCCACGTGTGAAGAGTGTACGACATTTACCACCACTTGGAC
* * * * ** *
16438 CACCACGGACGAACAAGGTCAAAGCCAGACCGAATCTGGGGTGGTAGAGGTGACCACCGATGAGC
66 CACCACAGACGAACAAGG-CAAACCCAGACCGAATCTGGCGTAGTAGAAATGACCACCGATGAAC
*
16503 AGGGTCAGATCACT
130 AGGGCCAGATCACT
* * * * * *
16517 ACAACTACCTCAGTGTTCCCACAGCCCACGTGTGAAGAGTGTACGACTTTTACGACGACTTGGAC
1 ACAACCACCTCGGTGTTTCCACAGCCCACGTGTGAAGAGTGTACGACATTTACCACCACTTGGAC
* * * * * *
16582 TACCACAGACGAA-GAGG-GAACCCAGACCGACTCTGGCGTAGTTGAAATTACCACCGATGAACA
66 CACCACAGACGAACAAGGCAAACCCAGACCGAATCTGGCGTAGTAGAAATGACCACCGATGAACA
*
16645 GGGCCAGCTCACT
131 GGGCCAGATCACT
* * * * * *
16658 ACTACCACCTCGGTATTTCCACAACCCACGTGTGAAGAATGTACGACATTCACCACCACATGGAC
1 ACAACCACCTCGGTGTTTCCACAGCCCACGTGTGAAGAGTGTACGACATTTACCACCACTTGGAC
* * * * * * * * * *
16723 CACCACAGACGAACAAGGACAACCCCAAACAGACTCGGGCATTGTGGAAGTGACCACCGACGAAC
66 CACCACAGACGAACAAGG-CAAACCCAGACCGAATCTGGCGTAGTAGAAATGACCACCGATGAAC
16788 AGGG
130 AGGG
16792 GGAACTCAGC
Statistics
Matches: 221, Mismatches: 51, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
141 112 0.51
142 3 0.01
143 3 0.01
144 103 0.47
ACGTcount: A:0.30, C:0.30, G:0.24, T:0.16
Consensus pattern (143 bp):
ACAACCACCTCGGTGTTTCCACAGCCCACGTGTGAAGAGTGTACGACATTTACCACCACTTGGAC
CACCACAGACGAACAAGGCAAACCCAGACCGAATCTGGCGTAGTAGAAATGACCACCGATGAACA
GGGCCAGATCACT
Left flanking sequence: Indices 15873 -- 16372
TGCCTTCTAGCCTGCAACAAGTAGAGCAAACAATCCAATTTGAACCCGGTTCGACTGGACTCTTC
AGGATGCCCGACGATCTTTACGAGCACAAAATTACCGTACGGGGCTTCGGTCAGGGTAATGCTCT
AGGGGCAGATTTCGGGCCAATCGAACGTTTCAACTACTCGGGCTCAACGTTGATTCTAGAGAATC
TGTGGGGGGCAGCGATTGCAGATATTGGCGAAGGATACGACGAATCGTTGTTCCGGATAGCCGAC
GAAGAACACGAAGATTGGGTTGACGAAAACTACATTTTCTTGTACGACGGCCCAGTACCCGAAGG
GTTAGAATGGGCTTCTAATTGCAACGCTTGTCCGACCCCATTGGCGGCGCCACTGGAGGTGCCTT
GTGAAGAATGCACCACTTTTACTTCGACGTGGGCCACAACCGAGAACGAGGTCACTGCTACGGAC
TCTGGAGTAATTGTGGTGACTACTGACGAGGATGGACAGCTCTCC
Right flanking sequence: Indices 16792 -- 17291
GGAACTCAGCACCACCACGTCTTTGTTCCCTTCGCCCACCGAGTGTGAGGACTGTACGGAATTTA
CGACGACATTCACCACCACGGATGAAGAAGCCACTCAAACGGACTCGGGGGTTGTTATCGTGACC
ACGGACGAGGAAGGAGCTTTGACCACCACTACCTCGTTGTTTCCCGACCCCGAGGAGTGTCCCGA
GTGCACGACGTTCACCACGGAATGGACCACAACCGGTGACGACGGTTCCACCGAGACAGACTCTG
GGCTTGTGATAGTGTCCACCGGCCCAGGTGGGGTGCTCACCACCACGACCTCGTTGTTCCCCAAC
CCAGAGGAGTGTCCAGAGTGCACTACTTTCACCACTGATTGGACGACAACTGAAGACGGGGTTGA
ACACACGGACTCTGGGGTGGTCATAGTGACCACGGATCCCGAGGGAGTGTTGAGTACCACGACGT
CGGTATTTCCCAGGCCCACCGACCCGGGTACCTTGTCCACAACCA
Found at i:18364 original size:24 final size:24
Alignment explanation
Indices: 18332--18432 Score: 96
Period size: 24 Copynumber: 4.2 Consensus size: 24
18322 TGCGACCACA
*
18332 GACGACCAGGGTAACGCGGAGACT
1 GACGACCAGGGTAACGCGGAGCCT
* *
18356 GACGACCAGGGTAACGCTGAGCCA
1 GACGACCAGGGTAACGCGGAGCCT
* * * *
18380 GACGTCCAAGGCAACACGGAGCCAT
1 GACGACCAGGGTAACGCGGAGCC-T
** *
18405 -ACGACCAGGGTAACATGGAGCCA
1 GACGACCAGGGTAACGCGGAGCCT
18428 GACGA
1 GACGA
18433 ACCCGGATTC
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.32, C:0.28, G:0.33, T:0.08
Consensus pattern (24 bp):
GACGACCAGGGTAACGCGGAGCCT
Left flanking sequence: Indices 17832 -- 18331
CTGAATACACCAGTACCTGGATTGATGGAGGCGTCACCGATTCTGGCGTAGTCATCGTGACAACC
GACGGCGACGGCCAGGTGTTCACCAGCACATCGGTGTTCCCAGGGCCACCGGAGCTCACCACGTA
CACCACCACGTGGACAGACAACGGAGACACGGGTTCTGGGGTGGTTATCGTGACCACTGACGAGA
ACGGGCAGGCGGTGACTACAACTTCGGAGTTCCAAGGGCTCACCACACACACCACGCCCTGGACG
GTTGACGGCGAAACTGAATCCGGTGGGGTTACGGTGGTTACTGTCACCACAGACGACGACGGTCA
CGTAGTTACCACGACCTCGCCCTTCCCTGAGCCACCTGAGTTAACTAGTTACACTACGACCTGGA
CAACAGAGGGAGAGACCAACTCAGGAGTGGTCATTGTCACGACTGACGACGAGGGCCAGGCTGTG
ACCTCGACCTCAGTGTTTCCCATGGACTCACCGGTTGCGACCACA
Right flanking sequence: Indices 18433 -- 18932
ACCCGGATTCACCACACCGAAGACAGTCACTGACGACAACGGCAACCAGCCCGCGGAAACGGGGA
CTTTTGGGGTGACTACTACGGAAGGAGAGCCTACACTCGGGTTAACGGGCGAAGGTGGTCAGCCC
GACAACGGAGCCATACAACCAGCTCCAACCACAGCTCCTGGTGGTTCTCCGGTCTCTATACCGTT
GGTGTACCCAGACCAACAGGAGCCTAGCCAGCCGGGCCAGGCTGAGGCCCCAGGAGTTATCCTTC
CGGTTCCAGAGGGCCAGGAAAATGAGGAACCTGGCCAGGAAAGCGAGGAACCCGGCCTGGAAGCC
GTGGAACCTGGTCTGGAAAATGAGGAACCTGGCCTGGAAAATGAGGAACCTGCCCACGACGACAA
TCGCTCTGGACCAGCTATGGGGTCAGTAGGCCCAACAATGGATCCAATAGCTACTCAAGAGACTC
TGGTTGCACCCACAGCGGTTGGACCGTCGGTCATTGTGGCCGGTG
Found at i:18730 original size:21 final size:21
Alignment explanation
Indices: 18704--18809 Score: 122
Period size: 21 Copynumber: 5.0 Consensus size: 21
18694 GGTTCCAGAG
*
18704 GGCCAGGAAAATGAGGAACCT
1 GGCCTGGAAAATGAGGAACCT
* ** *
18725 GGCCAGGAAAGCGAGGAACCC
1 GGCCTGGAAAATGAGGAACCT
*** *
18746 GGCCTGGAAGCCGTGGAACCT
1 GGCCTGGAAAATGAGGAACCT
*
18767 GGTCTGGAAAATGAGGAACCT
1 GGCCTGGAAAATGAGGAACCT
18788 GGCCTGGAAAATGAGGAACCT
1 GGCCTGGAAAATGAGGAACCT
18809 G
1 G
18810 CCCACGACGA
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 71 1.00
ACGTcount: A:0.31, C:0.22, G:0.36, T:0.11
Consensus pattern (21 bp):
GGCCTGGAAAATGAGGAACCT
Left flanking sequence: Indices 18204 -- 18703
GTTACACTACGACCTGGACAACAGAGGGAGAGACCAACTCAGGAGTGGTCATTGTCACGACTGAC
GACGAGGGCCAGGCTGTGACCTCGACCTCAGTGTTTCCCATGGACTCACCGGTTGCGACCACAGA
CGACCAGGGTAACGCGGAGACTGACGACCAGGGTAACGCTGAGCCAGACGTCCAAGGCAACACGG
AGCCATACGACCAGGGTAACATGGAGCCAGACGAACCCGGATTCACCACACCGAAGACAGTCACT
GACGACAACGGCAACCAGCCCGCGGAAACGGGGACTTTTGGGGTGACTACTACGGAAGGAGAGCC
TACACTCGGGTTAACGGGCGAAGGTGGTCAGCCCGACAACGGAGCCATACAACCAGCTCCAACCA
CAGCTCCTGGTGGTTCTCCGGTCTCTATACCGTTGGTGTACCCAGACCAACAGGAGCCTAGCCAG
CCGGGCCAGGCTGAGGCCCCAGGAGTTATCCTTCCGGTTCCAGAG
Right flanking sequence: Indices 18810 -- 19309
CCCACGACGACAATCGCTCTGGACCAGCTATGGGGTCAGTAGGCCCAACAATGGATCCAATAGCT
ACTCAAGAGACTCTGGTTGCACCCACAGCGGTTGGACCGTCGGTCATTGTGGCCGGTGGAGGCCC
CGTGAACGAGGTCTATCTGGCCCTTTTCGTTGTGGCTATGGTCCCAGTATTGTTTTTGTAATTGT
ACATGAATGTTAAGCTATTTCATGAAGAGCAAGCAGGACAAGCTGTATTAGCTGCCTCTAAACGT
ATATCGAGGCTGAATTGACAAGTGGCGGTGGCCATCGTGGTAAAACGTTGTTTTGGTATAAAACG
TGACCAAAGGTCACGTGACTTTTCACAAATAGACAGAGGTTCTCCTGGGGACCCCGTTTCCCCAA
ATTTTTTTCAGCGAAGCAGCAGCACCAGGGTGGTCTCCGAGACGTTCTCAAGCGGTTTGCTTTTG
TTCGTCTCCTTCGAGTCACCCCTGGGGCAGTTATAAGGTAACCAC
Found at i:20096 original size:20 final size:22
Alignment explanation
Indices: 20071--20119 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
20061 ATAACCACCA
* *
20071 CCCACCATC-T-CCGCCATCCC
1 CCCACCATCTTCCCACCAACCC
20091 CCCACCATCTTCCCACCAACCC
1 CCCACCATCTTCCCACCAACCC
20113 CCCACCA
1 CCCACCA
20120 ACCCCCTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.36
21 1 0.04
22 15 0.60
ACGTcount: A:0.20, C:0.65, G:0.02, T:0.12
Consensus pattern (22 bp):
CCCACCATCTTCCCACCAACCC
Left flanking sequence: Indices 19571 -- 20070
CTCTCCACGGTTGTGATGTTGCTGTAGTCAACAGCAGCGGAAGTGCCCAAGACTCTGACCTTTGG
TGGTATAATGGTGGTATAGACCAAGTCTTTCTTTAGTGCGTCTAATGGTTGCAAAAGGCGGTTAG
TAGGTACAACGACCAATGAGAGAATTGAGCGCAAAATACGATTAAAACACGATCTGTAGATGGTA
GAGTAACGTAACAAACAGCTAAGCTGAGCCGTGTCCCCTACTCCTTCAAAACGGGGTGGTTCTGG
TGGCGTTGATGGGAATACACTGTTGCTTACGTCAGCAAGACCACCGCCATCACACCCATCTACCG
ACACCCACCAACATCCACATCCACAGCACAAACCACACACCACCACAACTACCAAGCCCCCAACA
CACTACCACTGCCACCCACTGCCCCATCTAGGCGTTGGGGGGGTCTGGGGGGGCGCCGCTCGCGG
CCCCCCCAGCTACAACCTTTGCTTACGTAACCCCTATAACCACCA
Right flanking sequence: Indices 20120 -- 20619
ACCCCCTATCCTCTCGCCACCTCCCCCCATGCCCACCCGGTGCACCGTACTCGCACCTTGCCCGC
ACCTTGCCCGCACCCGACCCGTGCCCGCACTCGAGCCCGCACCGCGCGCTGCACCTCATCGCGGG
CTGCAGCGAACTCATCGCCAGAACCCACCCACCACTCCATGAACAAGTCCAAGCGCACCGAGCTG
ACGCGGCGCCACGGGTACCGCTCGTTCAAGGACCGCGTGGACCTGGTGCGGATCGAGCCGCTGCT
CAATCTCACCAAGCGCACCCTGGACTACGTCGAGGTGCTGCACACCCTCACGGTGCTCGAGCACT
GGCGCGAGTGCAACTTGCTGGCGCTGTTCACCGAGTTCAGCGACGAGGTCGCCCCGTACGTGCGG
CTGTTGCCCCAGTTGCTCTACCACAAGGCCACGGTGTGGCGCCTTCTCCACGCCCACTTGCTCCG
CGGCGACAAGCACGCGCTCCAGCCGCTTCTCGAGATCGCCGCCCA
Found at i:20185 original size:11 final size:11
Alignment explanation
Indices: 20171--20198 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
20161 GCACCGTACT
20171 CGCACCTTGCC
1 CGCACCTTGCC
20182 CGCACCTTGCC
1 CGCACCTTGCC
20193 CGCACC
1 CGCACC
20199 CGACCCGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.11, C:0.57, G:0.18, T:0.14
Consensus pattern (11 bp):
CGCACCTTGCC
Left flanking sequence: Indices 19671 -- 20170
GTGCGTCTAATGGTTGCAAAAGGCGGTTAGTAGGTACAACGACCAATGAGAGAATTGAGCGCAAA
ATACGATTAAAACACGATCTGTAGATGGTAGAGTAACGTAACAAACAGCTAAGCTGAGCCGTGTC
CCCTACTCCTTCAAAACGGGGTGGTTCTGGTGGCGTTGATGGGAATACACTGTTGCTTACGTCAG
CAAGACCACCGCCATCACACCCATCTACCGACACCCACCAACATCCACATCCACAGCACAAACCA
CACACCACCACAACTACCAAGCCCCCAACACACTACCACTGCCACCCACTGCCCCATCTAGGCGT
TGGGGGGGTCTGGGGGGGCGCCGCTCGCGGCCCCCCCAGCTACAACCTTTGCTTACGTAACCCCT
ATAACCACCACCCACCATCTCCGCCATCCCCCCACCATCTTCCCACCAACCCCCCACCAACCCCC
TATCCTCTCGCCACCTCCCCCCATGCCCACCCGGTGCACCGTACT
Right flanking sequence: Indices 20199 -- 20698
CGACCCGTGCCCGCACTCGAGCCCGCACCGCGCGCTGCACCTCATCGCGGGCTGCAGCGAACTCA
TCGCCAGAACCCACCCACCACTCCATGAACAAGTCCAAGCGCACCGAGCTGACGCGGCGCCACGG
GTACCGCTCGTTCAAGGACCGCGTGGACCTGGTGCGGATCGAGCCGCTGCTCAATCTCACCAAGC
GCACCCTGGACTACGTCGAGGTGCTGCACACCCTCACGGTGCTCGAGCACTGGCGCGAGTGCAAC
TTGCTGGCGCTGTTCACCGAGTTCAGCGACGAGGTCGCCCCGTACGTGCGGCTGTTGCCCCAGTT
GCTCTACCACAAGGCCACGGTGTGGCGCCTTCTCCACGCCCACTTGCTCCGCGGCGACAAGCACG
CGCTCCAGCCGCTTCTCGAGATCGCCGCCCAGCTCGCCCACGACTTGGGCCCCGACTTCCTCCCG
TTCTACCCCGAGTTCCTCGCCACCGCCGCCGAGATCGCCCGGCGC
Found at i:21766 original size:15 final size:15
Alignment explanation
Indices: 21746--21783 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
21736 GGCAAGAGGT
*
21746 GAAGAAGGAGAAGGA
1 GAAGAAGAAGAAGGA
21761 GAAGAAGAAGAAGGA
1 GAAGAAGAAGAAGGA
*
21776 GGAGAAGA
1 GAAGAAGA
21784 TAGAGAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (15 bp):
GAAGAAGAAGAAGGA
Left flanking sequence: Indices 21246 -- 21745
AGGTGGGGCAGTGGCCCCCGCTCGTGGAGGCGTTCCTCGCGATGCCCGTGGGCGGCGACGACGCC
ACCGACGCGGCGTTCGTGGCCGTGTGCTTGTTCCGCAACGCCCCCGCGCTCGAGATGGCCCGCTA
CGCCGCCCGGGTGTTTGCCAAGGCGAGAGAGCACCACTTCATGTTTGAGGTGGCGGCCGCCGGGA
TGGCCACGCCCCGGGCCGACGACGCGTTGGTGGCGCACGGGGTGGCGCGCGAGGTGGCGCGGTAC
CTGGGGGCGTTGCCCCCCGCGCGGTGGCCGCAGTTGGCGTTGTTCAAGTGGACGATGGCGGTGCA
CGCGCGGCCGGTGCCCGTGGAGGTGCCCGCGGAGGTGCAGCGCGAGGTGGCGCGCGCGGTGGCCC
TGCGGGTGCGCGCGCACGCGGTGCCCGAGTTCTGGCAGTTGGTGCTTGCGCCGGTGGCCGACGCC
GACGCGCTCGGGTTGGTGCGCCAGCTCGTGGGGGTGGCAAGAGGT
Right flanking sequence: Indices 21784 -- 22283
TAGAGAAGATGGAGATGAAGATGCCAAAGACGAACATGCCAAAGACAATAGAAACGGAGGCGTAG
CCTCTAGGGCAAATAGGAGTGCTAAGGTTGGTACTGGTTCTAAGAGAAAATCTAACAGAGCCAAC
TCTAACAGAGACAACTCTGACGACTCTGACGACTCTAACAGTCTCGACTCTGACTCTGACTCTGC
CCAAAACACCGCCGTCACCCTCCCCTCGCTGCCCCGCGCCCTCGCCCGCGCCGCCCCCGTCGCCA
ACTCGCTCGCCCTCGTGGTGGAGCTGGTGCGCGACCCCGCGGTCGCCGCCGCCGCCGTGGCCGCG
GTGGCGGAGGTGCCGTGGACGCTGCGGCTCGTGTGCGCGGTGGAGCGCGCCGTGGCCACCGCGGG
CCCTGCCCTCGCCCCCGGGGCCCGCGCCCGCGTGGTGGCGCGCGCCACCGCCGAGTTGGCGCTGG
TGGTGCACGAAACGCGCGCCGCGGCGTTGGCGCTCTTGCCCCGCG
Found at i:21790 original size:18 final size:18
Alignment explanation
Indices: 21746--21804 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
21736 GGCAAGAGGT
* *
21746 GAAGAAGGAGAAGGAGAA
1 GAAGAAGAAGGAGGAGAA
21764 GAAGAAGAAGGAGGAGAA
1 GAAGAAGAAGGAGGAGAA
*
21782 GATAG-AGAA-GATGGAGAT
1 GA-AGAAGAAGGA-GGAGAA
21800 GAAGA
1 GAAGA
21805 TGCCAAAGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
17 4 0.11
18 29 0.83
19 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.42, T:0.05
Consensus pattern (18 bp):
GAAGAAGAAGGAGGAGAA
Left flanking sequence: Indices 21246 -- 21745
AGGTGGGGCAGTGGCCCCCGCTCGTGGAGGCGTTCCTCGCGATGCCCGTGGGCGGCGACGACGCC
ACCGACGCGGCGTTCGTGGCCGTGTGCTTGTTCCGCAACGCCCCCGCGCTCGAGATGGCCCGCTA
CGCCGCCCGGGTGTTTGCCAAGGCGAGAGAGCACCACTTCATGTTTGAGGTGGCGGCCGCCGGGA
TGGCCACGCCCCGGGCCGACGACGCGTTGGTGGCGCACGGGGTGGCGCGCGAGGTGGCGCGGTAC
CTGGGGGCGTTGCCCCCCGCGCGGTGGCCGCAGTTGGCGTTGTTCAAGTGGACGATGGCGGTGCA
CGCGCGGCCGGTGCCCGTGGAGGTGCCCGCGGAGGTGCAGCGCGAGGTGGCGCGCGCGGTGGCCC
TGCGGGTGCGCGCGCACGCGGTGCCCGAGTTCTGGCAGTTGGTGCTTGCGCCGGTGGCCGACGCC
GACGCGCTCGGGTTGGTGCGCCAGCTCGTGGGGGTGGCAAGAGGT
Right flanking sequence: Indices 21805 -- 22304
TGCCAAAGACGAACATGCCAAAGACAATAGAAACGGAGGCGTAGCCTCTAGGGCAAATAGGAGTG
CTAAGGTTGGTACTGGTTCTAAGAGAAAATCTAACAGAGCCAACTCTAACAGAGACAACTCTGAC
GACTCTGACGACTCTAACAGTCTCGACTCTGACTCTGACTCTGCCCAAAACACCGCCGTCACCCT
CCCCTCGCTGCCCCGCGCCCTCGCCCGCGCCGCCCCCGTCGCCAACTCGCTCGCCCTCGTGGTGG
AGCTGGTGCGCGACCCCGCGGTCGCCGCCGCCGCCGTGGCCGCGGTGGCGGAGGTGCCGTGGACG
CTGCGGCTCGTGTGCGCGGTGGAGCGCGCCGTGGCCACCGCGGGCCCTGCCCTCGCCCCCGGGGC
CCGCGCCCGCGTGGTGGCGCGCGCCACCGCCGAGTTGGCGCTGGTGGTGCACGAAACGCGCGCCG
CGGCGTTGGCGCTCTTGCCCCGCGCCGGGGTGGACTCGCCGCTCG
Found at i:21804 original size:21 final size:21
Alignment explanation
Indices: 21746--21805 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
21736 GGCAAGAGGT
* *
21746 GAAGAAGGAGAAGGAGA-AGAA
1 GAAGAAGGAGGAGAAGATAG-A
21767 GAAGAAGGAGGAGAAGATAGA
1 GAAGAAGGAGGAGAAGATAGA
*
21788 GAAGATGGA-GATGAAGAT
1 GAAGAAGGAGGA-GAAGAT
21806 GCCAAAGACG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.06
21 30 0.88
22 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.42, T:0.07
Consensus pattern (21 bp):
GAAGAAGGAGGAGAAGATAGA
Left flanking sequence: Indices 21246 -- 21745
AGGTGGGGCAGTGGCCCCCGCTCGTGGAGGCGTTCCTCGCGATGCCCGTGGGCGGCGACGACGCC
ACCGACGCGGCGTTCGTGGCCGTGTGCTTGTTCCGCAACGCCCCCGCGCTCGAGATGGCCCGCTA
CGCCGCCCGGGTGTTTGCCAAGGCGAGAGAGCACCACTTCATGTTTGAGGTGGCGGCCGCCGGGA
TGGCCACGCCCCGGGCCGACGACGCGTTGGTGGCGCACGGGGTGGCGCGCGAGGTGGCGCGGTAC
CTGGGGGCGTTGCCCCCCGCGCGGTGGCCGCAGTTGGCGTTGTTCAAGTGGACGATGGCGGTGCA
CGCGCGGCCGGTGCCCGTGGAGGTGCCCGCGGAGGTGCAGCGCGAGGTGGCGCGCGCGGTGGCCC
TGCGGGTGCGCGCGCACGCGGTGCCCGAGTTCTGGCAGTTGGTGCTTGCGCCGGTGGCCGACGCC
GACGCGCTCGGGTTGGTGCGCCAGCTCGTGGGGGTGGCAAGAGGT
Right flanking sequence: Indices 21806 -- 22305
GCCAAAGACGAACATGCCAAAGACAATAGAAACGGAGGCGTAGCCTCTAGGGCAAATAGGAGTGC
TAAGGTTGGTACTGGTTCTAAGAGAAAATCTAACAGAGCCAACTCTAACAGAGACAACTCTGACG
ACTCTGACGACTCTAACAGTCTCGACTCTGACTCTGACTCTGCCCAAAACACCGCCGTCACCCTC
CCCTCGCTGCCCCGCGCCCTCGCCCGCGCCGCCCCCGTCGCCAACTCGCTCGCCCTCGTGGTGGA
GCTGGTGCGCGACCCCGCGGTCGCCGCCGCCGCCGTGGCCGCGGTGGCGGAGGTGCCGTGGACGC
TGCGGCTCGTGTGCGCGGTGGAGCGCGCCGTGGCCACCGCGGGCCCTGCCCTCGCCCCCGGGGCC
CGCGCCCGCGTGGTGGCGCGCGCCACCGCCGAGTTGGCGCTGGTGGTGCACGAAACGCGCGCCGC
GGCGTTGGCGCTCTTGCCCCGCGCCGGGGTGGACTCGCCGCTCGT
Found at i:21919 original size:15 final size:15
Alignment explanation
Indices: 21899--21931 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
21889 TAAGAGAAAA
*
21899 TCTAACAGAGCCAAC
1 TCTAACAGAGACAAC
21914 TCTAACAGAGACAAC
1 TCTAACAGAGACAAC
21929 TCT
1 TCT
21932 GACGACTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.30, G:0.12, T:0.18
Consensus pattern (15 bp):
TCTAACAGAGACAAC
Left flanking sequence: Indices 21399 -- 21898
CGAGAGAGCACCACTTCATGTTTGAGGTGGCGGCCGCCGGGATGGCCACGCCCCGGGCCGACGAC
GCGTTGGTGGCGCACGGGGTGGCGCGCGAGGTGGCGCGGTACCTGGGGGCGTTGCCCCCCGCGCG
GTGGCCGCAGTTGGCGTTGTTCAAGTGGACGATGGCGGTGCACGCGCGGCCGGTGCCCGTGGAGG
TGCCCGCGGAGGTGCAGCGCGAGGTGGCGCGCGCGGTGGCCCTGCGGGTGCGCGCGCACGCGGTG
CCCGAGTTCTGGCAGTTGGTGCTTGCGCCGGTGGCCGACGCCGACGCGCTCGGGTTGGTGCGCCA
GCTCGTGGGGGTGGCAAGAGGTGAAGAAGGAGAAGGAGAAGAAGAAGAAGGAGGAGAAGATAGAG
AAGATGGAGATGAAGATGCCAAAGACGAACATGCCAAAGACAATAGAAACGGAGGCGTAGCCTCT
AGGGCAAATAGGAGTGCTAAGGTTGGTACTGGTTCTAAGAGAAAA
Right flanking sequence: Indices 21932 -- 22431
GACGACTCTGACGACTCTAACAGTCTCGACTCTGACTCTGACTCTGCCCAAAACACCGCCGTCAC
CCTCCCCTCGCTGCCCCGCGCCCTCGCCCGCGCCGCCCCCGTCGCCAACTCGCTCGCCCTCGTGG
TGGAGCTGGTGCGCGACCCCGCGGTCGCCGCCGCCGCCGTGGCCGCGGTGGCGGAGGTGCCGTGG
ACGCTGCGGCTCGTGTGCGCGGTGGAGCGCGCCGTGGCCACCGCGGGCCCTGCCCTCGCCCCCGG
GGCCCGCGCCCGCGTGGTGGCGCGCGCCACCGCCGAGTTGGCGCTGGTGGTGCACGAAACGCGCG
CCGCGGCGTTGGCGCTCTTGCCCCGCGCCGGGGTGGACTCGCCGCTCGTGGCCACCATGGCGGTG
GTGGAGCTGGTGCCGTTGCTGTTGGACACCGCCCGCGACGTCGAGCAGCGGCTGCGGCTGTTGGC
GCTCGACGTGGCCAACGGGCAGTGGCTGGCGCACGAGCACACGAT
Found at i:22609 original size:6 final size:6
Alignment explanation
Indices: 22598--22628 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
22588 GGAGAACGGG
*
22598 GAGACT GAGACT GAGATT GAGACT GAGACT G
1 GAGACT GAGACT GAGACT GAGACT GAGACT G
22629 GTAAGACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.19
Consensus pattern (6 bp):
GAGACT
Left flanking sequence: Indices 22098 -- 22597
CCGTGGCCGCGGTGGCGGAGGTGCCGTGGACGCTGCGGCTCGTGTGCGCGGTGGAGCGCGCCGTG
GCCACCGCGGGCCCTGCCCTCGCCCCCGGGGCCCGCGCCCGCGTGGTGGCGCGCGCCACCGCCGA
GTTGGCGCTGGTGGTGCACGAAACGCGCGCCGCGGCGTTGGCGCTCTTGCCCCGCGCCGGGGTGG
ACTCGCCGCTCGTGGCCACCATGGCGGTGGTGGAGCTGGTGCCGTTGCTGTTGGACACCGCCCGC
GACGTCGAGCAGCGGCTGCGGCTGTTGGCGCTCGACGTGGCCAACGGGCAGTGGCTGGCGCACGA
GCACACGATGGTGGCCAACTGGTTTGTGGGCCAGTTGCTGAACAAGTTCAAGCCGAGTTGGCTGG
CGGTGTACGAGGCGTGGCCCAAGGTCGGGGTGGAGTGGGGCGTGCTCGAGTGGTACTTGACGGAG
GAGGGGCGAGAGGAGGGGGATGAGGGGGATGAGGAGGAGAACGGG
Right flanking sequence: Indices 22629 -- 23128
GTAAGACTAAGTCTGAGTCTGATAAGACTAATGAGAAGACTGGTAAGTCTAAGTCCAAGTCTACT
TCTGACTTTAAGTCTGACTCCATGTCTAAGTCTACCAAGTCCAAGCCTACTCCCTCCAAGTCCCG
CTCCCTCTCGTTCACCGAGTTCGACTCCGAACCCTTGCATGCCCCCGGCACCCCCGCGGGCCCTC
CCTCCGCTGAGGCTGACAACATCACTGACTCAGCTGACACAATCACTGACTCAGCGACCACCGCT
GACTCAGCTGCTGACACAATCTCTGACTCAGCATCCACCAACCTTCTCCCCACCGAGCCCCGGTT
CGTGCTGGCGTACAACGCCATGGCCGACCACGCCCACCCGTACCACCTCGTGGACGAGCTGCTTG
CGCTCGCCCGCGCCGGCGCGTGGGAACTGCCGCTGGTGGAGTCGATGCGCACCCAGGTGCTCCGG
GGCCTCGTCCAGGTGCCCCTGGTGGCCTCGGACCACTTGGACACC
Found at i:22675 original size:21 final size:21
Alignment explanation
Indices: 22622--22683 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
22612 GATTGAGACT
*
22622 GAGACTGGTAAGACTAAGTCT
1 GAGACTGGTAAGACTAAGTCA
* * *
22643 GAGTCTGATAAGACTAA-TGA
1 GAGACTGGTAAGACTAAGTCA
*
22663 GAAGACTGGTAAGTCTAAGTC
1 G-AGACTGGTAAGACTAAGTC
22684 CAAGTCTACT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.06
21 28 0.90
22 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.24
Consensus pattern (21 bp):
GAGACTGGTAAGACTAAGTCA
Left flanking sequence: Indices 22122 -- 22621
CGTGGACGCTGCGGCTCGTGTGCGCGGTGGAGCGCGCCGTGGCCACCGCGGGCCCTGCCCTCGCC
CCCGGGGCCCGCGCCCGCGTGGTGGCGCGCGCCACCGCCGAGTTGGCGCTGGTGGTGCACGAAAC
GCGCGCCGCGGCGTTGGCGCTCTTGCCCCGCGCCGGGGTGGACTCGCCGCTCGTGGCCACCATGG
CGGTGGTGGAGCTGGTGCCGTTGCTGTTGGACACCGCCCGCGACGTCGAGCAGCGGCTGCGGCTG
TTGGCGCTCGACGTGGCCAACGGGCAGTGGCTGGCGCACGAGCACACGATGGTGGCCAACTGGTT
TGTGGGCCAGTTGCTGAACAAGTTCAAGCCGAGTTGGCTGGCGGTGTACGAGGCGTGGCCCAAGG
TCGGGGTGGAGTGGGGCGTGCTCGAGTGGTACTTGACGGAGGAGGGGCGAGAGGAGGGGGATGAG
GGGGATGAGGAGGAGAACGGGGAGACTGAGACTGAGATTGAGACT
Right flanking sequence: Indices 22684 -- 23183
CAAGTCTACTTCTGACTTTAAGTCTGACTCCATGTCTAAGTCTACCAAGTCCAAGCCTACTCCCT
CCAAGTCCCGCTCCCTCTCGTTCACCGAGTTCGACTCCGAACCCTTGCATGCCCCCGGCACCCCC
GCGGGCCCTCCCTCCGCTGAGGCTGACAACATCACTGACTCAGCTGACACAATCACTGACTCAGC
GACCACCGCTGACTCAGCTGCTGACACAATCTCTGACTCAGCATCCACCAACCTTCTCCCCACCG
AGCCCCGGTTCGTGCTGGCGTACAACGCCATGGCCGACCACGCCCACCCGTACCACCTCGTGGAC
GAGCTGCTTGCGCTCGCCCGCGCCGGCGCGTGGGAACTGCCGCTGGTGGAGTCGATGCGCACCCA
GGTGCTCCGGGGCCTCGTCCAGGTGCCCCTGGTGGCCTCGGACCACTTGGACACCCTTGTGGCCC
TCGTGGACGCCCCGTGGCCCACCCCGCAGCGCAACTTGCTCTTGG
Found at i:22859 original size:21 final size:20
Alignment explanation
Indices: 22835--22898 Score: 78
Period size: 21 Copynumber: 3.2 Consensus size: 20
22825 CTCCGCTGAG
22835 GCTGACAACATCACTGACTCA
1 GCTGAC-ACATCACTGACTCA
22856 GCTGACACAATCACTGACTCA
1 GCTGACAC-ATCACTGACTCA
* *
22877 GC-GAC-CACCGCTGACTCA
1 GCTGACACATCACTGACTCA
22895 GCTG
1 GCTG
22899 CTGACACAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
18 12 0.31
19 2 0.05
20 5 0.13
21 20 0.51
ACGTcount: A:0.28, C:0.36, G:0.19, T:0.17
Consensus pattern (20 bp):
GCTGACACATCACTGACTCA
Left flanking sequence: Indices 22335 -- 22834
CGTTGCTGTTGGACACCGCCCGCGACGTCGAGCAGCGGCTGCGGCTGTTGGCGCTCGACGTGGCC
AACGGGCAGTGGCTGGCGCACGAGCACACGATGGTGGCCAACTGGTTTGTGGGCCAGTTGCTGAA
CAAGTTCAAGCCGAGTTGGCTGGCGGTGTACGAGGCGTGGCCCAAGGTCGGGGTGGAGTGGGGCG
TGCTCGAGTGGTACTTGACGGAGGAGGGGCGAGAGGAGGGGGATGAGGGGGATGAGGAGGAGAAC
GGGGAGACTGAGACTGAGATTGAGACTGAGACTGGTAAGACTAAGTCTGAGTCTGATAAGACTAA
TGAGAAGACTGGTAAGTCTAAGTCCAAGTCTACTTCTGACTTTAAGTCTGACTCCATGTCTAAGT
CTACCAAGTCCAAGCCTACTCCCTCCAAGTCCCGCTCCCTCTCGTTCACCGAGTTCGACTCCGAA
CCCTTGCATGCCCCCGGCACCCCCGCGGGCCCTCCCTCCGCTGAG
Right flanking sequence: Indices 22899 -- 23398
CTGACACAATCTCTGACTCAGCATCCACCAACCTTCTCCCCACCGAGCCCCGGTTCGTGCTGGCG
TACAACGCCATGGCCGACCACGCCCACCCGTACCACCTCGTGGACGAGCTGCTTGCGCTCGCCCG
CGCCGGCGCGTGGGAACTGCCGCTGGTGGAGTCGATGCGCACCCAGGTGCTCCGGGGCCTCGTCC
AGGTGCCCCTGGTGGCCTCGGACCACTTGGACACCCTTGTGGCCCTCGTGGACGCCCCGTGGCCC
ACCCCGCAGCGCAACTTGCTCTTGGAGGCGCTCGCCAAGCACAAGCTGTTGGCCCAGACCGCCGG
GGCCGCCCACTTGAAGGCGGTGGCCACCCAGTTGTTGGGCCACGTGCACCGCGGGACCCAGAAGC
TTGCGTTGGAGGTGCTCTCGGCGTTCCTGGACCTTGGGATTCTTCGCAAGTACCAGGACTTGATG
CGGGGCCTCCTCGACGACCAGCTCTTCCGCGACCAGATGGCCCAG
Found at i:23095 original size:21 final size:23
Alignment explanation
Indices: 23071--23113 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
23061 CGATGCGCAC
*
23071 CCAGGTGCTCC-GG-GGCCTCGT
1 CCAGGTGCCCCTGGTGGCCTCGT
23092 CCAGGTGCCCCTGGTGGCCTCG
1 CCAGGTGCCCCTGGTGGCCTCG
23114 GACCACTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 2 0.11
23 7 0.37
ACGTcount: A:0.05, C:0.40, G:0.37, T:0.19
Consensus pattern (23 bp):
CCAGGTGCCCCTGGTGGCCTCGT
Left flanking sequence: Indices 22571 -- 23070
GATGAGGGGGATGAGGAGGAGAACGGGGAGACTGAGACTGAGATTGAGACTGAGACTGGTAAGAC
TAAGTCTGAGTCTGATAAGACTAATGAGAAGACTGGTAAGTCTAAGTCCAAGTCTACTTCTGACT
TTAAGTCTGACTCCATGTCTAAGTCTACCAAGTCCAAGCCTACTCCCTCCAAGTCCCGCTCCCTC
TCGTTCACCGAGTTCGACTCCGAACCCTTGCATGCCCCCGGCACCCCCGCGGGCCCTCCCTCCGC
TGAGGCTGACAACATCACTGACTCAGCTGACACAATCACTGACTCAGCGACCACCGCTGACTCAG
CTGCTGACACAATCTCTGACTCAGCATCCACCAACCTTCTCCCCACCGAGCCCCGGTTCGTGCTG
GCGTACAACGCCATGGCCGACCACGCCCACCCGTACCACCTCGTGGACGAGCTGCTTGCGCTCGC
CCGCGCCGGCGCGTGGGAACTGCCGCTGGTGGAGTCGATGCGCAC
Right flanking sequence: Indices 23114 -- 23613
GACCACTTGGACACCCTTGTGGCCCTCGTGGACGCCCCGTGGCCCACCCCGCAGCGCAACTTGCT
CTTGGAGGCGCTCGCCAAGCACAAGCTGTTGGCCCAGACCGCCGGGGCCGCCCACTTGAAGGCGG
TGGCCACCCAGTTGTTGGGCCACGTGCACCGCGGGACCCAGAAGCTTGCGTTGGAGGTGCTCTCG
GCGTTCCTGGACCTTGGGATTCTTCGCAAGTACCAGGACTTGATGCGGGGCCTCCTCGACGACCA
GCTCTTCCGCGACCAGATGGCCCAGATGGCGTTTGCCGCGGGCGACGAGGCCAAGGCGATGCCGT
ACGTGCTCCGGGTGTTGTTTGGGCGTGTGCAGGGCCGGGTGGCCAAGCTGGCGACCCTGCGCAAC
GCCGTGCTCCAGTTCCTTCCGAAGCTCTCCGATGAGAATTTGGAGCGGTTCTTGGCGATTGCTGC
CGAGGCCACGGGCCACGACGGTGGTAGTGAGGTGGCTGGGGCGGT
Found at i:23737 original size:21 final size:21
Alignment explanation
Indices: 23698--23738 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23688 TGTACAAGCT
*
23698 GGTGCTGGTGCCCGGGTTGGC
1 GGTGCTGGTGCCCGCGTTGGC
23719 GGTGCTGGTG-CCGCCGTTGG
1 GGTGCTGGTGCCCG-CGTTGG
23739 TGGCGGTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.00, C:0.24, G:0.51, T:0.24
Consensus pattern (21 bp):
GGTGCTGGTGCCCGCGTTGGC
Left flanking sequence: Indices 23198 -- 23697
CACAAGCTGTTGGCCCAGACCGCCGGGGCCGCCCACTTGAAGGCGGTGGCCACCCAGTTGTTGGG
CCACGTGCACCGCGGGACCCAGAAGCTTGCGTTGGAGGTGCTCTCGGCGTTCCTGGACCTTGGGA
TTCTTCGCAAGTACCAGGACTTGATGCGGGGCCTCCTCGACGACCAGCTCTTCCGCGACCAGATG
GCCCAGATGGCGTTTGCCGCGGGCGACGAGGCCAAGGCGATGCCGTACGTGCTCCGGGTGTTGTT
TGGGCGTGTGCAGGGCCGGGTGGCCAAGCTGGCGACCCTGCGCAACGCCGTGCTCCAGTTCCTTC
CGAAGCTCTCCGATGAGAATTTGGAGCGGTTCTTGGCGATTGCTGCCGAGGCCACGGGCCACGAC
GGTGGTAGTGAGGTGGCTGGGGCGGTGGACGTGGACGTGGAGACCGTGGACGTGCGCCAGTTGAA
GCGGTTGCGTGCGTACACCCTGCTTTTATTTGATGTGTACAAGCT
Right flanking sequence: Indices 23739 -- 24238
TGGCGGTGGTGCAGACGGCGGAGGCGGTGTGCGAAGCAGAGGGAGAGGAGGGAGGAGAGGTGGAG
GGAGAAGAAGAAGAAGAAGCTGAGGTAATGGAGGATGTGGTAATGGAGGGAGAGGAAGAAGAGGT
TTTGGAGGCTATGGAAGTGGACGAGACTGAGAAGTCTACGAAGTCTAAGTCTGAGAAGTCTAAGT
CTAATGCTGACACCGAAGACATTGCCATTGAAAACAATGCCATCGACACCACCCACACCACCCAC
ACCCCCTCTCGCCTCCTCCACTCCGCACAGCTCACCCGTGCCTCCGCCCTCAAGGCGTTCGCACG
CCTCCTCACCACCATCGACCACGACTGGACCGACGCTGCCAACGCCGTGGCCGCCGCGGTGGCCC
CGCTCTGGCCCGGGTTCTCCCGCGACAACGCCACCACCCCCACCCCGCTCTTTGCCCTCGTGGAG
GCCGCGGTCGACGCCCCGCTGCCGCTGGCACGCACCCTCCTCTAC
Found at i:23920 original size:15 final size:14
Alignment explanation
Indices: 23900--23936 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
23890 CGAGACTGAG
23900 AAGTCTACGAAGTCT
1 AAGTCTA-GAAGTCT
23915 AAGTCTGAGAAGTCT
1 AAGTCT-AGAAGTCT
23930 AAGTCTA
1 AAGTCTA
23937 ATGCTGACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (14 bp):
AAGTCTAGAAGTCT
Left flanking sequence: Indices 23400 -- 23899
TGGCGTTTGCCGCGGGCGACGAGGCCAAGGCGATGCCGTACGTGCTCCGGGTGTTGTTTGGGCGT
GTGCAGGGCCGGGTGGCCAAGCTGGCGACCCTGCGCAACGCCGTGCTCCAGTTCCTTCCGAAGCT
CTCCGATGAGAATTTGGAGCGGTTCTTGGCGATTGCTGCCGAGGCCACGGGCCACGACGGTGGTA
GTGAGGTGGCTGGGGCGGTGGACGTGGACGTGGAGACCGTGGACGTGCGCCAGTTGAAGCGGTTG
CGTGCGTACACCCTGCTTTTATTTGATGTGTACAAGCTGGTGCTGGTGCCCGGGTTGGCGGTGCT
GGTGCCGCCGTTGGTGGCGGTGGTGCAGACGGCGGAGGCGGTGTGCGAAGCAGAGGGAGAGGAGG
GAGGAGAGGTGGAGGGAGAAGAAGAAGAAGAAGCTGAGGTAATGGAGGATGTGGTAATGGAGGGA
GAGGAAGAAGAGGTTTTGGAGGCTATGGAAGTGGACGAGACTGAG
Right flanking sequence: Indices 23937 -- 24436
ATGCTGACACCGAAGACATTGCCATTGAAAACAATGCCATCGACACCACCCACACCACCCACACC
CCCTCTCGCCTCCTCCACTCCGCACAGCTCACCCGTGCCTCCGCCCTCAAGGCGTTCGCACGCCT
CCTCACCACCATCGACCACGACTGGACCGACGCTGCCAACGCCGTGGCCGCCGCGGTGGCCCCGC
TCTGGCCCGGGTTCTCCCGCGACAACGCCACCACCCCCACCCCGCTCTTTGCCCTCGTGGAGGCC
GCGGTCGACGCCCCGCTGCCGCTGGCACGCACCCTCCTCTACCCCGGGGGGTTCGCCCCGGTGCA
CGCGATGCTCGCACTCCTCACCAGTGCGCGCACCTCCCCCGCGGTCGCCGCCGCCGCCATGCGCT
GGTGCCAGCGGGTGCTCACCGCGCCCGCCCCGGACGACCGGTGGTACGAGGTGGTGGCCCACGTG
GTGACGGCGCTCGTGGCACACTTGCCCGCGGTGATCCGCCGCATG
Found at i:28289 original size:14 final size:15
Alignment explanation
Indices: 28269--28302 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
28259 CGGGTGAAGA
28269 AGAAGCGGAGAGTTT
1 AGAAGCGGAGAGTTT
28284 -GAAGCGGAGAGTTT
1 AGAAGCGGAGAGTTT
28298 AGAAG
1 AGAAG
28303 AAGGAGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.35, C:0.06, G:0.41, T:0.18
Consensus pattern (15 bp):
AGAAGCGGAGAGTTT
Left flanking sequence: Indices 27769 -- 28268
ACACAACCTGGCGTACGTGGCGGACGAGGAGCTGGACCAGCAGTTTGGCCTGGCCATGGAGTTCT
TGATGCACCGGGCCACCGGCATTTTGCGCAAACACCCGCAGAAGGAGCTGCTTTTCACCCTGAAA
AAGGCGGTGATGAAGCTCGTGGCGATGTTGATCCAGATTGTGCCCGCGGAGCAGCTCGAGAAGCC
GGCGGAGGCGGTGATCATTGCGTTGAACACCTACATCGAGACCGACGACACCGAGTTGCGCCCGT
TGGCGCTCGAGGTGCAGCTGGTGCTTGAGCTGAAGCTTGGGATGAGCGAGTTTTCGCGGATCCAC
GCCCACACCTACCAGCAGATCCACCAGCGGCGGGTGGACCGCCGGGCCAAGCGGGCGCAGTTGGC
GATCGACGCCCCCGACGTGGCTGCCGCCAACCGGGTCAAGAAACACATCAAGGACCGCAAGCGGC
GCAAGGTGAACGACAAGGACGAGAACGGGTTGTTCCGGGTGAAGA
Right flanking sequence: Indices 28303 -- 28802
AAGGAGAATTTAGCATGTATTATAGAGCATTGATAAACATTCGAATACTATTTTGGCTGCAAGAA
GTAGTAAAACGAGGCTGCAAAAAGTGGCTGCAAAAAGGCTGCTTGGCAGAACTACGCCTAAAAGG
AAGAGTTTTTGTAGGGAAGCTGAGATAATCGTATAACACGGAAAGCTGAAGGACACGGCAAGCTG
TTTTTTCAAGTTAGACAATTTATTGGTTGGTAGCTAGTTAGCTTTGTCTTAATTATAATTTTGAT
AGTGTCATGTGATGTCAGGTCACGTGACTTTTTCCATCCCGACAGAGGTTAGCCTGGGGCCTGTT
TTCCCGAAATTTTTTTCAGCGTCGTAGCAGCGTCAGAATGCCGGTTGGGTCTATTTCAATTGGTT
TCGTTGGACTTTACCCCTCTGGTGTGACCCAGACGGCAACCACAAAGAAATCAGCTTATATGCAC
TACCTTTACCAATAACAAGGCGATAGCGTGGTGGCTGGAGGAGAA
Found at i:28396 original size:13 final size:13
Alignment explanation
Indices: 28380--28404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28370 AGTAAAACGA
28380 GGCTGCAAAAAGT
1 GGCTGCAAAAAGT
28393 GGCTGCAAAAAG
1 GGCTGCAAAAAG
28405 GCTGCTTGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.32, T:0.12
Consensus pattern (13 bp):
GGCTGCAAAAAGT
Left flanking sequence: Indices 27880 -- 28379
GCTGCTTTTCACCCTGAAAAAGGCGGTGATGAAGCTCGTGGCGATGTTGATCCAGATTGTGCCCG
CGGAGCAGCTCGAGAAGCCGGCGGAGGCGGTGATCATTGCGTTGAACACCTACATCGAGACCGAC
GACACCGAGTTGCGCCCGTTGGCGCTCGAGGTGCAGCTGGTGCTTGAGCTGAAGCTTGGGATGAG
CGAGTTTTCGCGGATCCACGCCCACACCTACCAGCAGATCCACCAGCGGCGGGTGGACCGCCGGG
CCAAGCGGGCGCAGTTGGCGATCGACGCCCCCGACGTGGCTGCCGCCAACCGGGTCAAGAAACAC
ATCAAGGACCGCAAGCGGCGCAAGGTGAACGACAAGGACGAGAACGGGTTGTTCCGGGTGAAGAA
GAAGCGGAGAGTTTGAAGCGGAGAGTTTAGAAGAAGGAGAATTTAGCATGTATTATAGAGCATTG
ATAAACATTCGAATACTATTTTGGCTGCAAGAAGTAGTAAAACGA
Right flanking sequence: Indices 28405 -- 28904
GCTGCTTGGCAGAACTACGCCTAAAAGGAAGAGTTTTTGTAGGGAAGCTGAGATAATCGTATAAC
ACGGAAAGCTGAAGGACACGGCAAGCTGTTTTTTCAAGTTAGACAATTTATTGGTTGGTAGCTAG
TTAGCTTTGTCTTAATTATAATTTTGATAGTGTCATGTGATGTCAGGTCACGTGACTTTTTCCAT
CCCGACAGAGGTTAGCCTGGGGCCTGTTTTCCCGAAATTTTTTTCAGCGTCGTAGCAGCGTCAGA
ATGCCGGTTGGGTCTATTTCAATTGGTTTCGTTGGACTTTACCCCTCTGGTGTGACCCAGACGGC
AACCACAAAGAAATCAGCTTATATGCACTACCTTTACCAATAACAAGGCGATAGCGTGGTGGCTG
GAGGAGAAAACCCGGGAAATCAACCTAAAACTCCTCCAGCGGGGTGTGGCCAGTAGTGCGGGCAT
TTTTTGGGATCAATTTGGGGGACTCTAGACTCAGCGCCCTGATCA
Found at i:29831 original size:16 final size:16
Alignment explanation
Indices: 29795--29831 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
29785 AACCCCTTCG
*
29795 CCAACACATACCGGTT
1 CCAACACATACCGCTT
*
29811 TCAACACATACCGCTT
1 CCAACACATACCGCTT
29827 CCAAC
1 CCAAC
29832 CAAGGCTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.41, G:0.08, T:0.19
Consensus pattern (16 bp):
CCAACACATACCGCTT
Left flanking sequence: Indices 29295 -- 29794
AACTAGGGTGCCTCGGGTCATCAAAATTGCTTCAACTCCCTTCTCTACACTATGAGTCGACTGAT
ACTAGTTTTACGGTAGGGTAAAAAAATTAAACACGCCCTCTACCAGGTACCTTCTGCACTGCCCT
TGTTCCACCTACGCCGGTGCCTAGCAACCCCTGACGTGTCGCTTAGTAATGAGACACATTCACAA
TAGCCCGCTACGTCCTCGTGTTTAGTTGCCTATTTCGCTTGTTTTTGTGGCCGGTGGCTTATCAA
TGTCTCCACCGTTATGTCTCCTATGTCTCGATGTCTCCCGTTGTCCCTCGCTTATGCACCCAATA
TACGAATAGCCGCTTGCCCCCCATCGCCCATCAGACCAATCGTCAAGTCGATACGGGCGGCTAGC
TCGCTGCCACATTTCATCGATCGCCAAAGTCTATTGCTCAACTCTAATTTGCCCTATTTGAGAAC
TGGTTATGAACTTGCTAAGAAACATTTTCACCGTAAACCCCTTCG
Right flanking sequence: Indices 29832 -- 30331
CAAGGCTTAGTCCTTATGCTCGTCTCCCCATTCCTTATGCTCGTCTCCCCCGTTTCTGTTCCTGT
CCGTCGGTTTTAGGGCCTCCATACCAACCTCCGACACCCCGCTCGAGCCGGTAGACCAAAACAAT
AGTCCTCGACAATAGTCTTGAAAACAGTCCTGACAATAGTCCCACCTTATCGGGGCAAGCACCGG
ACCGCCGGAACCGTAAATGTCTGAAAACCTTCCCGTTTGACATGATAACGCCAAGATAACAATCC
CGCTTACGTGACCGATGGCCACAAAACGGCTACCCCACAAGCGGGCAGCCACAAAGCGCACTCCA
TTACGTGTACCCCGGGCTCGAACGTCGGTCCTGCTTCGAACAATCGCCCAACCCACCCGCCTCGC
GGAACCCCGAGTGTAGGGCGCCTCCAAACACTTGTGGGCGCCTCCTGGCAGCTGGAGTCCACCAC
ACGAGCGATAGTCGAGCATTGTGCCTCAGACACAAAACTGACAAC
Found at i:29868 original size:21 final size:21
Alignment explanation
Indices: 29842--29881 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
29832 CAAGGCTTAG
29842 TCCTTATGCTCGTCTCCCCAT
1 TCCTTATGCTCGTCTCCCCAT
29863 TCCTTATGCTCGTCTCCCC
1 TCCTTATGCTCGTCTCCCC
29882 CGTTTCTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.45, G:0.10, T:0.38
Consensus pattern (21 bp):
TCCTTATGCTCGTCTCCCCAT
Left flanking sequence: Indices 29342 -- 29841
CACTATGAGTCGACTGATACTAGTTTTACGGTAGGGTAAAAAAATTAAACACGCCCTCTACCAGG
TACCTTCTGCACTGCCCTTGTTCCACCTACGCCGGTGCCTAGCAACCCCTGACGTGTCGCTTAGT
AATGAGACACATTCACAATAGCCCGCTACGTCCTCGTGTTTAGTTGCCTATTTCGCTTGTTTTTG
TGGCCGGTGGCTTATCAATGTCTCCACCGTTATGTCTCCTATGTCTCGATGTCTCCCGTTGTCCC
TCGCTTATGCACCCAATATACGAATAGCCGCTTGCCCCCCATCGCCCATCAGACCAATCGTCAAG
TCGATACGGGCGGCTAGCTCGCTGCCACATTTCATCGATCGCCAAAGTCTATTGCTCAACTCTAA
TTTGCCCTATTTGAGAACTGGTTATGAACTTGCTAAGAAACATTTTCACCGTAAACCCCTTCGCC
AACACATACCGGTTTCAACACATACCGCTTCCAACCAAGGCTTAG
Right flanking sequence: Indices 29882 -- 30381
CGTTTCTGTTCCTGTCCGTCGGTTTTAGGGCCTCCATACCAACCTCCGACACCCCGCTCGAGCCG
GTAGACCAAAACAATAGTCCTCGACAATAGTCTTGAAAACAGTCCTGACAATAGTCCCACCTTAT
CGGGGCAAGCACCGGACCGCCGGAACCGTAAATGTCTGAAAACCTTCCCGTTTGACATGATAACG
CCAAGATAACAATCCCGCTTACGTGACCGATGGCCACAAAACGGCTACCCCACAAGCGGGCAGCC
ACAAAGCGCACTCCATTACGTGTACCCCGGGCTCGAACGTCGGTCCTGCTTCGAACAATCGCCCA
ACCCACCCGCCTCGCGGAACCCCGAGTGTAGGGCGCCTCCAAACACTTGTGGGCGCCTCCTGGCA
GCTGGAGTCCACCACACGAGCGATAGTCGAGCATTGTGCCTCAGACACAAAACTGACAACTACTT
GACACGACAATGGGGCCAGACCCGTCTAATTCAGCATTAGCTCCA
Found at i:30002 original size:12 final size:12
Alignment explanation
Indices: 29957--30003 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
29947 GTAGACCAAA
29957 ACAATAGTCCTCG
1 ACAATAGTCCT-G
*
29970 ACAATAGTCTTG
1 ACAATAGTCCTG
* *
29982 AAAACAGTCCTG
1 ACAATAGTCCTG
29994 ACAATAGTCC
1 ACAATAGTCC
30004 CACCTTATCG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
12 18 0.64
13 10 0.36
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (12 bp):
ACAATAGTCCTG
Left flanking sequence: Indices 29457 -- 29956
GACGTGTCGCTTAGTAATGAGACACATTCACAATAGCCCGCTACGTCCTCGTGTTTAGTTGCCTA
TTTCGCTTGTTTTTGTGGCCGGTGGCTTATCAATGTCTCCACCGTTATGTCTCCTATGTCTCGAT
GTCTCCCGTTGTCCCTCGCTTATGCACCCAATATACGAATAGCCGCTTGCCCCCCATCGCCCATC
AGACCAATCGTCAAGTCGATACGGGCGGCTAGCTCGCTGCCACATTTCATCGATCGCCAAAGTCT
ATTGCTCAACTCTAATTTGCCCTATTTGAGAACTGGTTATGAACTTGCTAAGAAACATTTTCACC
GTAAACCCCTTCGCCAACACATACCGGTTTCAACACATACCGCTTCCAACCAAGGCTTAGTCCTT
ATGCTCGTCTCCCCATTCCTTATGCTCGTCTCCCCCGTTTCTGTTCCTGTCCGTCGGTTTTAGGG
CCTCCATACCAACCTCCGACACCCCGCTCGAGCCGGTAGACCAAA
Right flanking sequence: Indices 30004 -- 30503
CACCTTATCGGGGCAAGCACCGGACCGCCGGAACCGTAAATGTCTGAAAACCTTCCCGTTTGACA
TGATAACGCCAAGATAACAATCCCGCTTACGTGACCGATGGCCACAAAACGGCTACCCCACAAGC
GGGCAGCCACAAAGCGCACTCCATTACGTGTACCCCGGGCTCGAACGTCGGTCCTGCTTCGAACA
ATCGCCCAACCCACCCGCCTCGCGGAACCCCGAGTGTAGGGCGCCTCCAAACACTTGTGGGCGCC
TCCTGGCAGCTGGAGTCCACCACACGAGCGATAGTCGAGCATTGTGCCTCAGACACAAAACTGAC
AACTACTTGACACGACAATGGGGCCAGACCCGTCTAATTCAGCATTAGCTCCACACCCACCATTA
GTGGGCTGTCCATGCACCATCGCCGATCACTGACACTCATCACTGACACACCAATAACAATGCCC
GTTTACGCTATCGTCAACTACTTTTCTTGGCCTTGCTCCATTGTT
Found at i:31105 original size:21 final size:21
Alignment explanation
Indices: 31080--31128 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
31070 TCTACCGTTT
* *
31080 TCTACTTTCTCGTTTTCGTCC
1 TCTACTTTATCGTTCTCGTCC
* *
31101 TCTACGTTATCGTTCTCGTTC
1 TCTACTTTATCGTTCTCGTCC
*
31122 TCCACTT
1 TCTACTT
31129 CTCTATTTTC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.08, C:0.33, G:0.10, T:0.49
Consensus pattern (21 bp):
TCTACTTTATCGTTCTCGTCC
Left flanking sequence: Indices 30580 -- 31079
CCCAACACGGCCCCAGCGGGCCCAGAGTCCGCCGTCCACCCGCGCTCGCCTCGTAGCCCGCAATT
ACCGCTGTTTCGATCTACCCCAGCCGCGATTACCCCTGATATCACCACCCAATCACGCCTCACGC
CTCATGGTGAATAATAATAGTGAAAAAAAAAAATAAACCAACAATAGTAACCCAACAGAAGAGAG
CAACGGTAGCCAGGAAGCCAGAGAGCCAGCGACCTACTAAACCCCACGCCAATTGCACCAGCTGT
CGCACGGCTGGAGCACTGCGGCTATCTGCGTTCGCGCTGAGCGCCAACGGCCCGTTGACTGATTT
AGGTTCCACCTCGGTCTTGGCATCCTAAAAAAAGCCCGCAACCACCATGCTAAAAAAAGGGGAAC
AATCAGGATAGTGCTTAGGCTATGTCAGGTAGACGTGGTGGGCGTGGTAGGCGACCTGGAGAGCT
CGGTTATCCGTTTTCCCTTGTCAATATTCCTATTCTCTACCGTTT
Right flanking sequence: Indices 31129 -- 31628
CTCTATTTTCTTGTCCTGCCTAACGCACTTGGGCTGCCTGATCGCTAGCGCTGAAGCAAGGAGAA
TTCTGCAGTTCAGATTCGCCAAGGCCAGCAGCACAGAGCCAGGACGCAGCCAGCATGCAACCAGG
ACCCCTATCCGAGTGTCGTCGAGTCTACCTGTGCCCTACGTCCCCTCCTGGCGCTTTTTTCCGTC
CCCCTTCTCCGACCCCTTTTCTCGTAACTTTGATTATCACTGATCGGAAATCTCCCGGTAAACAC
CAGACGCGTCCGAAGTGCGTTTACTGGCCTGGAACGGAGTGAAACCCGTCAAAAACACCGTAGCG
CTTACCCAGCAACCGCGTGCTGTGACCTACGCCTCTCCCTACGCCTCTCCGCTACGTCACTAAGC
CGCCCACCCCTTCGCTTCGCAGCCATCGTACACAAAGACTAGCCTATGTTGTGAGCCGCAGCACA
TTGCGTATACTTTTTAGCCCGCGTAAAAACCTTAAACCACGCACG
Found at i:31496 original size:12 final size:12
Alignment explanation
Indices: 31479--31509 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
31469 CGTGCTGTGA
31479 CCTACGCCTCTC
1 CCTACGCCTCTC
31491 CCTACGCCTCTC
1 CCTACGCCTCTC
31503 CGCTACG
1 C-CTACG
31510 TCACTAAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.10, C:0.55, G:0.13, T:0.23
Consensus pattern (12 bp):
CCTACGCCTCTC
Left flanking sequence: Indices 30979 -- 31478
AGTGCTTAGGCTATGTCAGGTAGACGTGGTGGGCGTGGTAGGCGACCTGGAGAGCTCGGTTATCC
GTTTTCCCTTGTCAATATTCCTATTCTCTACCGTTTTCTACTTTCTCGTTTTCGTCCTCTACGTT
ATCGTTCTCGTTCTCCACTTCTCTATTTTCTTGTCCTGCCTAACGCACTTGGGCTGCCTGATCGC
TAGCGCTGAAGCAAGGAGAATTCTGCAGTTCAGATTCGCCAAGGCCAGCAGCACAGAGCCAGGAC
GCAGCCAGCATGCAACCAGGACCCCTATCCGAGTGTCGTCGAGTCTACCTGTGCCCTACGTCCCC
TCCTGGCGCTTTTTTCCGTCCCCCTTCTCCGACCCCTTTTCTCGTAACTTTGATTATCACTGATC
GGAAATCTCCCGGTAAACACCAGACGCGTCCGAAGTGCGTTTACTGGCCTGGAACGGAGTGAAAC
CCGTCAAAAACACCGTAGCGCTTACCCAGCAACCGCGTGCTGTGA
Right flanking sequence: Indices 31510 -- 32009
TCACTAAGCCGCCCACCCCTTCGCTTCGCAGCCATCGTACACAAAGACTAGCCTATGTTGTGAGC
CGCAGCACATTGCGTATACTTTTTAGCCCGCGTAAAAACCTTAAACCACGCACGTCGGTAAACAA
CCCCAATAGCCAATGGGGCCAGCTACCGAGCGAGCCCGCTAACCGACAGCCCCCATTGCCATTGG
ACCGCTCCCGCTACCGCCCCGCAGCCCCTCAGCCTCGGTTCCCCACCACCTCCTCCGCCACCGCG
CGTCCAGCCCGCATACCTCTGTTTCACCTAAACGGCGCCAAACAATAGCCATGCACAGTGGGAAT
TTTGCCCAATCGAGACATTTTACCCCTTCAGCTCGACCGGGACTACGCAACCAGAGCCTAAATGG
CGGGCGATGGGGTGATTACGAAACGCCATGCACGTAATCTACTGGGGGGATTGTTGTACTGTGCC
CGCGACGCGGTGGAAAGGGTTCGCATTGTCCACCGACATACGGCA
Found at i:32045 original size:13 final size:13
Alignment explanation
Indices: 32016--32061 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
32006 GGCAACTGTA
32016 CCCGTTTGGTCCTG
1 CCCGTTT-GTCCTG
*
32030 CCCGTTTGTTCTG
1 CCCGTTTGTCCTG
32043 CCCGTTTGTCCTG
1 CCCGTTTGTCCTG
32056 CCCGTT
1 CCCGTT
32062 AGACCCTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 23 0.77
14 7 0.23
ACGTcount: A:0.00, C:0.37, G:0.24, T:0.39
Consensus pattern (13 bp):
CCCGTTTGTCCTG
Left flanking sequence: Indices 31516 -- 32015
AGCCGCCCACCCCTTCGCTTCGCAGCCATCGTACACAAAGACTAGCCTATGTTGTGAGCCGCAGC
ACATTGCGTATACTTTTTAGCCCGCGTAAAAACCTTAAACCACGCACGTCGGTAAACAACCCCAA
TAGCCAATGGGGCCAGCTACCGAGCGAGCCCGCTAACCGACAGCCCCCATTGCCATTGGACCGCT
CCCGCTACCGCCCCGCAGCCCCTCAGCCTCGGTTCCCCACCACCTCCTCCGCCACCGCGCGTCCA
GCCCGCATACCTCTGTTTCACCTAAACGGCGCCAAACAATAGCCATGCACAGTGGGAATTTTGCC
CAATCGAGACATTTTACCCCTTCAGCTCGACCGGGACTACGCAACCAGAGCCTAAATGGCGGGCG
ATGGGGTGATTACGAAACGCCATGCACGTAATCTACTGGGGGGATTGTTGTACTGTGCCCGCGAC
GCGGTGGAAAGGGTTCGCATTGTCCACCGACATACGGCAACTGTA
Right flanking sequence: Indices 32062 -- 32561
AGACCCTATCAGTCGTCAACTATAGCCGTGGGGTAATTGCAAAATGGTCGGAAACCACCACCAGC
TGGGACGACCGAGGCTACTAACCCACGACACCCAACACCAGTGTCTGTCTGCGGTTTGTGCCCTG
CCCGGTTTGTGCCCTGGTGCCAGTGTTTGCCCCGCACTGGGACGGGCCCGATCTCAGGATATGCA
CGAACCCTCCTTACTGCTGCCAGGCCCAAACACATATAAATGGCCGGGGGTGCCCTGCAGAGACC
AACGAGACCAACGATGGACCACGAGATCCCCACTGAGCACATAACGGTGATTCTGGCCGCGTGGA
CGGCGCTCACCCTGGACGACCTGGTGCGGTTCCAGGCCCTGGTCGCAGACGCTATCTACACACAA
AACTACGGGAGAGAAGAACGCACCACCGACGTGTTTGGGGTGTTCCAGGAGTTCCAGCTCGCAGA
GACGCTCGCAGCCATCACCATGGTCATCCGCCGGCTCGAGGTGTC
Found at i:33403 original size:12 final size:12
Alignment explanation
Indices: 33376--33419 Score: 81
Period size: 12 Copynumber: 3.8 Consensus size: 12
33366 GTGGCTAGGA
33376 GTCCAGACGT-G
1 GTCCAGACGTGG
33387 GTCCAGACGTGG
1 GTCCAGACGTGG
33399 GTCCAGACGTGG
1 GTCCAGACGTGG
33411 GTCCAGACG
1 GTCCAGACG
33420 CGTCAGTCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.18, C:0.27, G:0.39, T:0.16
Consensus pattern (12 bp):
GTCCAGACGTGG
Left flanking sequence: Indices 32876 -- 33375
TTCTGTTGGTGGAGCTGACCACCACCGTGGCCACGGAAGCGATGGACGCGGAGCCCCCGAAAAAA
CGCCGGGCGTTGTCGGAGCTGCCCAAGGAGAAAAAGCACGCGGGCAAGGTGGTGACCAACGAGCT
GATGAAAAAGACCATCTGCGAGCCCAACGAGTTGCAGCACACCGAGTTTGGCGACGACCTGTACG
ACTTGATCAACTGTTTTGACATCCACGAGGCCGCTCCCGTGACCCCTCCCAAGGCGGTGCGCATG
CGCAAGCCGCTGTTGACGCGGATGAGAACGAACGACTCGGTGCGGAGCAGAAAGAAGAACCTCGT
CGAGCCCTACCTGTGTGTCATCGTCTGAAAATCAGGTGGAAATTACGGTATGTCTACTCGGAATG
ACCACCCGGTACGATACTCGGGTTTGGATAGCGCCACCCGGCCCAAACAGGCAATGCGGGGCATG
CACCCGGGGTACAGACCAGAGACGCACGACGGAATGTGGCTAGGA
Right flanking sequence: Indices 33420 -- 33919
CGTCAGTCGGGTCCAGACGTGATCTTCGTCAAACGTCAACCCCGGTTTGCGATCAAAAGCTGTTT
TGCCTGGTCCGACCAGCCAGGTTACAGCTACGCTCGTGTTATATATTCACGCTATATAGGCTCTG
CAGGCAGCAGCCAATCAACGTTTTCATGGTATGGAAGTAGGCGATTGTAGTATGGTAGGGGTTTG
TTACCTGACCACCATTCAATGACTTCGGTTGTTTAGCATACCACCATTCAACCAGTTGTTTAGCA
TTACTACCATTCAATGACCAGTTGTTTAGCATTTTAACCATTCAATGGCATCAGTTGGTGGTTAG
TATTACCATTGAATGTAGTAATGGTCTCGTGAAAGCTAATCACGTATGCAACAGTCACCAGGAAC
GTATCCCGGAGTCATTGCCCCTTTGAAAGCCAACCATTCCAGTCACCTCACATATAGCCACTTAC
TCTGCCACTCTAGTACTCTACCGCTCTCCATTCCACCACTCACCA
Found at i:33700 original size:31 final size:31
Alignment explanation
Indices: 33625--33726 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
33615 TTACCTGACC
* *
33625 ACCATTCAATGACTTCGGTTGTTTAGCA-TACC
1 ACCATTCAATGAC--CAGTTGTTTAGCATTACT
33657 ACCATTC-A--ACCAGTTGTTTAGCATTACT
1 ACCATTCAATGACCAGTTGTTTAGCATTACT
*
33685 ACCATTCAATGACCAGTTGTTTAGCATT-TT
1 ACCATTCAATGACCAGTTGTTTAGCATTACT
33715 AACCATTCAATG
1 -ACCATTCAATG
33727 GCATCAGTTG
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
27 12 0.19
28 10 0.16
29 3 0.05
30 1 0.02
31 29 0.47
32 7 0.11
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (31 bp):
ACCATTCAATGACCAGTTGTTTAGCATTACT
Left flanking sequence: Indices 33125 -- 33624
CGGTGCGCATGCGCAAGCCGCTGTTGACGCGGATGAGAACGAACGACTCGGTGCGGAGCAGAAAG
AAGAACCTCGTCGAGCCCTACCTGTGTGTCATCGTCTGAAAATCAGGTGGAAATTACGGTATGTC
TACTCGGAATGACCACCCGGTACGATACTCGGGTTTGGATAGCGCCACCCGGCCCAAACAGGCAA
TGCGGGGCATGCACCCGGGGTACAGACCAGAGACGCACGACGGAATGTGGCTAGGAGTCCAGACG
TGGTCCAGACGTGGGTCCAGACGTGGGTCCAGACGCGTCAGTCGGGTCCAGACGTGATCTTCGTC
AAACGTCAACCCCGGTTTGCGATCAAAAGCTGTTTTGCCTGGTCCGACCAGCCAGGTTACAGCTA
CGCTCGTGTTATATATTCACGCTATATAGGCTCTGCAGGCAGCAGCCAATCAACGTTTTCATGGT
ATGGAAGTAGGCGATTGTAGTATGGTAGGGGTTTGTTACCTGACC
Right flanking sequence: Indices 33727 -- 34226
GCATCAGTTGGTGGTTAGTATTACCATTGAATGTAGTAATGGTCTCGTGAAAGCTAATCACGTAT
GCAACAGTCACCAGGAACGTATCCCGGAGTCATTGCCCCTTTGAAAGCCAACCATTCCAGTCACC
TCACATATAGCCACTTACTCTGCCACTCTAGTACTCTACCGCTCTCCATTCCACCACTCACCACT
CTACCACTTACTACTATTCACTCACCACTCTACCAGTCTACTACCCCACCACTCACCACTCTACC
ACTTACTACCCCACCACAAGAACCCACCACTCGTCCACTCTCAACTCTTCCTTCTTCCACTCACC
ACTCTACCACTCTACAACCCACAAGCAATCAAGCAATCTAACGTCTATTCATCCACCCTCTATGT
GTTTGTCCACCATCTATTCCTCCACCCACCATATTCATCCACCTACATTGTTCATCACCTATCCA
CCTGTTACCTTGTTATCCACCTATCCATCCTTCCTTCTTCTTTGT
Found at i:33929 original size:8 final size:8
Alignment explanation
Indices: 33873--33989 Score: 75
Period size: 8 Copynumber: 15.4 Consensus size: 8
33863 ATAGCCACTT
*
33873 ACTCTGCC
1 ACTCTACC
**
33881 ACTCTAGT
1 ACTCTACC
33889 ACTCTACC
1 ACTCTACC
*
33897 GCTCT-CC
1 ACTCTACC
* *
33904 ATTCCACC
1 ACTCTACC
33912 ACTC-ACC
1 ACTCTACC
33919 ACTCTACC
1 ACTCTACC
*
33927 ACT-TACT
1 ACTCTACC
* *
33934 ACTAT-TC
1 ACTCTACC
33941 ACTC-ACC
1 ACTCTACC
33948 ACTCTACC
1 ACTCTACC
* *
33956 AGTCTACT
1 ACTCTACC
* *
33964 ACCCCACC
1 ACTCTACC
33972 ACTC-ACC
1 ACTCTACC
33979 ACTCTACC
1 ACTCTACC
33987 ACT
1 ACT
33990 TACTACCCCA
Statistics
Matches: 81, Mismatches: 22, Indels: 12
0.70 0.19 0.10
Matches are distributed among these distances:
7 32 0.40
8 49 0.60
ACGTcount: A:0.24, C:0.47, G:0.03, T:0.26
Consensus pattern (8 bp):
ACTCTACC
Left flanking sequence: Indices 33373 -- 33872
GGAGTCCAGACGTGGTCCAGACGTGGGTCCAGACGTGGGTCCAGACGCGTCAGTCGGGTCCAGAC
GTGATCTTCGTCAAACGTCAACCCCGGTTTGCGATCAAAAGCTGTTTTGCCTGGTCCGACCAGCC
AGGTTACAGCTACGCTCGTGTTATATATTCACGCTATATAGGCTCTGCAGGCAGCAGCCAATCAA
CGTTTTCATGGTATGGAAGTAGGCGATTGTAGTATGGTAGGGGTTTGTTACCTGACCACCATTCA
ATGACTTCGGTTGTTTAGCATACCACCATTCAACCAGTTGTTTAGCATTACTACCATTCAATGAC
CAGTTGTTTAGCATTTTAACCATTCAATGGCATCAGTTGGTGGTTAGTATTACCATTGAATGTAG
TAATGGTCTCGTGAAAGCTAATCACGTATGCAACAGTCACCAGGAACGTATCCCGGAGTCATTGC
CCCTTTGAAAGCCAACCATTCCAGTCACCTCACATATAGCCACTT
Right flanking sequence: Indices 33990 -- 34489
TACTACCCCACCACAAGAACCCACCACTCGTCCACTCTCAACTCTTCCTTCTTCCACTCACCACT
CTACCACTCTACAACCCACAAGCAATCAAGCAATCTAACGTCTATTCATCCACCCTCTATGTGTT
TGTCCACCATCTATTCCTCCACCCACCATATTCATCCACCTACATTGTTCATCACCTATCCACCT
GTTACCTTGTTATCCACCTATCCATCCTTCCTTCTTCTTTGTTCATCCACTATCCACCCCACCTT
CTTCTTTCCACCCTCCTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCT
ACTTACAGTTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTGTGCGACTGG
CCATACGAGTCCGCCAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACTCCGGCTGCACCGTCAC
CAGGTGCACCCCGTACCGGTGCAAGATCTCGCGCACAGAGCCCAC
Found at i:33929 original size:15 final size:15
Alignment explanation
Indices: 33889--33989 Score: 78
Period size: 15 Copynumber: 6.7 Consensus size: 15
33879 CCACTCTAGT
* *
33889 ACTCTACCGCTCTCC
1 ACTCTACCACTCACC
* *
33904 ATTCCACCACTCACC
1 ACTCTACCACTCACC
* *
33919 ACTCTACCACTTACT
1 ACTCTACCACTCACC
* *
33934 ACTAT-TCACTCACC
1 ACTCTACCACTCACC
* *
33948 ACTCTACCAGTCTACT
1 ACTCTACCACTC-ACC
* *
33964 ACCCCACCACTCACC
1 ACTCTACCACTCACC
33979 ACTCTACCACT
1 ACTCTACCACT
33990 TACTACCCCA
Statistics
Matches: 62, Mismatches: 22, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
14 10 0.16
15 41 0.66
16 11 0.18
ACGTcount: A:0.25, C:0.49, G:0.02, T:0.25
Consensus pattern (15 bp):
ACTCTACCACTCACC
Left flanking sequence: Indices 33389 -- 33888
CCAGACGTGGGTCCAGACGTGGGTCCAGACGCGTCAGTCGGGTCCAGACGTGATCTTCGTCAAAC
GTCAACCCCGGTTTGCGATCAAAAGCTGTTTTGCCTGGTCCGACCAGCCAGGTTACAGCTACGCT
CGTGTTATATATTCACGCTATATAGGCTCTGCAGGCAGCAGCCAATCAACGTTTTCATGGTATGG
AAGTAGGCGATTGTAGTATGGTAGGGGTTTGTTACCTGACCACCATTCAATGACTTCGGTTGTTT
AGCATACCACCATTCAACCAGTTGTTTAGCATTACTACCATTCAATGACCAGTTGTTTAGCATTT
TAACCATTCAATGGCATCAGTTGGTGGTTAGTATTACCATTGAATGTAGTAATGGTCTCGTGAAA
GCTAATCACGTATGCAACAGTCACCAGGAACGTATCCCGGAGTCATTGCCCCTTTGAAAGCCAAC
CATTCCAGTCACCTCACATATAGCCACTTACTCTGCCACTCTAGT
Right flanking sequence: Indices 33990 -- 34489
TACTACCCCACCACAAGAACCCACCACTCGTCCACTCTCAACTCTTCCTTCTTCCACTCACCACT
CTACCACTCTACAACCCACAAGCAATCAAGCAATCTAACGTCTATTCATCCACCCTCTATGTGTT
TGTCCACCATCTATTCCTCCACCCACCATATTCATCCACCTACATTGTTCATCACCTATCCACCT
GTTACCTTGTTATCCACCTATCCATCCTTCCTTCTTCTTTGTTCATCCACTATCCACCCCACCTT
CTTCTTTCCACCCTCCTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCT
ACTTACAGTTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTGTGCGACTGG
CCATACGAGTCCGCCAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACTCCGGCTGCACCGTCAC
CAGGTGCACCCCGTACCGGTGCAAGATCTCGCGCACAGAGCCCAC
Found at i:34002 original size:15 final size:15
Alignment explanation
Indices: 33960--34003 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
33950 TCTACCAGTC
33960 TACTACCCCACCACT
1 TACTACCCCACCACT
* * * *
33975 CACCACTCTACCACT
1 TACTACCCCACCACT
33990 TACTACCCCACCAC
1 TACTACCCCACCAC
34004 AAGAACCCAC
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.27, C:0.55, G:0.00, T:0.18
Consensus pattern (15 bp):
TACTACCCCACCACT
Left flanking sequence: Indices 33460 -- 33959
CCCGGTTTGCGATCAAAAGCTGTTTTGCCTGGTCCGACCAGCCAGGTTACAGCTACGCTCGTGTT
ATATATTCACGCTATATAGGCTCTGCAGGCAGCAGCCAATCAACGTTTTCATGGTATGGAAGTAG
GCGATTGTAGTATGGTAGGGGTTTGTTACCTGACCACCATTCAATGACTTCGGTTGTTTAGCATA
CCACCATTCAACCAGTTGTTTAGCATTACTACCATTCAATGACCAGTTGTTTAGCATTTTAACCA
TTCAATGGCATCAGTTGGTGGTTAGTATTACCATTGAATGTAGTAATGGTCTCGTGAAAGCTAAT
CACGTATGCAACAGTCACCAGGAACGTATCCCGGAGTCATTGCCCCTTTGAAAGCCAACCATTCC
AGTCACCTCACATATAGCCACTTACTCTGCCACTCTAGTACTCTACCGCTCTCCATTCCACCACT
CACCACTCTACCACTTACTACTATTCACTCACCACTCTACCAGTC
Right flanking sequence: Indices 34004 -- 34503
AAGAACCCACCACTCGTCCACTCTCAACTCTTCCTTCTTCCACTCACCACTCTACCACTCTACAA
CCCACAAGCAATCAAGCAATCTAACGTCTATTCATCCACCCTCTATGTGTTTGTCCACCATCTAT
TCCTCCACCCACCATATTCATCCACCTACATTGTTCATCACCTATCCACCTGTTACCTTGTTATC
CACCTATCCATCCTTCCTTCTTCTTTGTTCATCCACTATCCACCCCACCTTCTTCTTTCCACCCT
CCTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCTACTTACAGTTGGTG
GTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTGTGCGACTGGCCATACGAGTCCGC
CAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACTCCGGCTGCACCGTCACCAGGTGCACCCCGT
ACCGGTGCAAGATCTCGCGCACAGAGCCCACCACCTGGGTGAACG
Found at i:34238 original size:32 final size:32
Alignment explanation
Indices: 34191--34256 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
34181 ACCTGTTACC
* **
34191 TTGTTATCCACCTATCCATCCTTCCTTCTTCT
1 TTGTTATCCACCTATCCACCCCACCTTCTTCT
34223 TTGTTCATCCA-CTATCCACCCCACCTTCTTCT
1 TTGTT-ATCCACCTATCCACCCCACCTTCTTCT
34255 TT
1 TT
34257 CCACCCTCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 25 0.83
33 5 0.17
ACGTcount: A:0.14, C:0.39, G:0.03, T:0.44
Consensus pattern (32 bp):
TTGTTATCCACCTATCCACCCCACCTTCTTCT
Left flanking sequence: Indices 33691 -- 34190
CAATGACCAGTTGTTTAGCATTTTAACCATTCAATGGCATCAGTTGGTGGTTAGTATTACCATTG
AATGTAGTAATGGTCTCGTGAAAGCTAATCACGTATGCAACAGTCACCAGGAACGTATCCCGGAG
TCATTGCCCCTTTGAAAGCCAACCATTCCAGTCACCTCACATATAGCCACTTACTCTGCCACTCT
AGTACTCTACCGCTCTCCATTCCACCACTCACCACTCTACCACTTACTACTATTCACTCACCACT
CTACCAGTCTACTACCCCACCACTCACCACTCTACCACTTACTACCCCACCACAAGAACCCACCA
CTCGTCCACTCTCAACTCTTCCTTCTTCCACTCACCACTCTACCACTCTACAACCCACAAGCAAT
CAAGCAATCTAACGTCTATTCATCCACCCTCTATGTGTTTGTCCACCATCTATTCCTCCACCCAC
CATATTCATCCACCTACATTGTTCATCACCTATCCACCTGTTACC
Right flanking sequence: Indices 34257 -- 34756
CCACCCTCCTTACCTCTGTTCATTCCTATAAGCCCGCTAGTGTTTATATCGGCCACCTACTTACA
GTTGGTGGTGTCGCAGTTGGCCATCTCGTCCACCGCACACACCCCCTTGTGCGACTGGCCATACG
AGTCCGCCAACTCGGTCGCCGGCAGCGAAATGTCGGCAAACTCCGGCTGCACCGTCACCAGGTGC
ACCCCGTACCGGTGCAAGATCTCGCGCACAGAGCCCACCACCTGGGTGAACGCCTTCTGGTTCAA
CTCGCCGGGCGCACAGTCGTCCACCAATTGCAAGTGCAACAGCGCGATCAAAATGTCCTCGTTCA
AGTTCCAGATGTGGAAGTCGTGCACCAGCTTCACCTGGGGAATCTGCAAGATCTTCTGTAAGATG
GCGTTCAGGTCGACGTTGGGCGGGGTCGCCTGCAACAAGATCTTCAGCGCCTTGCGGCAGAGCGG
CAACGCCAGCGAGAAGATGATCGCGGTGATCACGAGTGACGTCAC
Found at i:36248 original size:14 final size:14
Alignment explanation
Indices: 36229--36280 Score: 77
Period size: 14 Copynumber: 3.7 Consensus size: 14
36219 GCTTAGACAG
*
36229 TCTCGGTGGGGCAA
1 TCTCGGTGAGGCAA
36243 TCTCGGTGAGGCAA
1 TCTCGGTGAGGCAA
**
36257 TCTCGGTGAGGCTG
1 TCTCGGTGAGGCAA
36271 TCTCGGTGAG
1 TCTCGGTGAG
36281 AATGTCTCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.13, C:0.21, G:0.40, T:0.25
Consensus pattern (14 bp):
TCTCGGTGAGGCAA
Left flanking sequence: Indices 35729 -- 36228
TACGTATCTGTAGCTAAGCCGTTATTTAGGGTTTGGCAACATAAGCTTCCGAGCAGCCGGTTTGT
GTCACAAACGGTGGGCGTGGCAGCAACCGATTGTTGACGCAGGCTTAGCTCGGGTTGGCCGTTTG
CAGTAGGCAATTTTCGTAGCGCTAGGTGGTTGCAAACGGCTGTCACTGTGGGGTGCACCTGCCGG
CCCGGTTTCGCAGTGTAGGAGATGCGTGCTTAACCCCGAGACTGGGCAAGCCCCATTTGGCACGC
CTCATTTGTGGACGGAAGTCCACCCCAGTGTGGTGGCCCGGCTCGACGCACTGCGTGACGGCCAC
CATTGTCTGGCGTGCATCGATTCCGTCCGATGGTGCGTGCGATCACCTGGCAGTGATCTGAAACA
CGCCCGGAGCGAGTGTGACAGCCGGGTCGGCCCGACCTGGTGGGGGCGGTGTGGGGCCACTACGC
TAGCGCTAGTCCCGTTCGGGCACGTGGCTTTTAATGCTTAGACAG
Right flanking sequence: Indices 36281 -- 36780
AATGTCTCGGTGAGGCTGTTTCACGTCGGAGTAAAATCAGTCAAAAATAAGGGGAACATCAGTGG
GGGAACATCCGTGGGGGTATACAATGGGAGTTTTGATTATATGAAACTGTAACGGAGAGGCAGAC
GTGAAACAGAGACGAGGTGGAGGTGGCAGTGTCTGTTCCCCGCTAATTATGGGGCCATCGGTGGG
GTGATGCTGAGACGAGGCTGATAGACGAGCGCACAATCTGGTGTGCATTTCCGTAACGAGCCAGA
ATGCAGGGTAAACGGGTTGAAAGGGGAAGGGAGCTCGTAGCGGGGGATTCGTAGCGGGACCGATA
GCGGTTCTTTTCGTGGCATTCTACGTGGGATCGGATTACCCAATATTGCAAACGCCTCGAATTGC
GCATCTGCGTCATTAGCCGTATGGCTTAGAGGCTAGATAGTGGATGAACCTTTTAGACTGACTAA
AGGAACCGAGAAACGAGATACCAGAGGAACAAGTAAAAGGGATAC
Found at i:36286 original size:14 final size:14
Alignment explanation
Indices: 36257--36294 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
36247 GGTGAGGCAA
**
36257 TCTCGGTGAGGCTG
1 TCTCGGTGAGAATG
36271 TCTCGGTGAGAATG
1 TCTCGGTGAGAATG
36285 TCTCGGTGAG
1 TCTCGGTGAG
36295 GCTGTTTCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.13, C:0.18, G:0.39, T:0.29
Consensus pattern (14 bp):
TCTCGGTGAGAATG
Left flanking sequence: Indices 35757 -- 36256
GGGTTTGGCAACATAAGCTTCCGAGCAGCCGGTTTGTGTCACAAACGGTGGGCGTGGCAGCAACC
GATTGTTGACGCAGGCTTAGCTCGGGTTGGCCGTTTGCAGTAGGCAATTTTCGTAGCGCTAGGTG
GTTGCAAACGGCTGTCACTGTGGGGTGCACCTGCCGGCCCGGTTTCGCAGTGTAGGAGATGCGTG
CTTAACCCCGAGACTGGGCAAGCCCCATTTGGCACGCCTCATTTGTGGACGGAAGTCCACCCCAG
TGTGGTGGCCCGGCTCGACGCACTGCGTGACGGCCACCATTGTCTGGCGTGCATCGATTCCGTCC
GATGGTGCGTGCGATCACCTGGCAGTGATCTGAAACACGCCCGGAGCGAGTGTGACAGCCGGGTC
GGCCCGACCTGGTGGGGGCGGTGTGGGGCCACTACGCTAGCGCTAGTCCCGTTCGGGCACGTGGC
TTTTAATGCTTAGACAGTCTCGGTGGGGCAATCTCGGTGAGGCAA
Right flanking sequence: Indices 36295 -- 36794
GCTGTTTCACGTCGGAGTAAAATCAGTCAAAAATAAGGGGAACATCAGTGGGGGAACATCCGTGG
GGGTATACAATGGGAGTTTTGATTATATGAAACTGTAACGGAGAGGCAGACGTGAAACAGAGACG
AGGTGGAGGTGGCAGTGTCTGTTCCCCGCTAATTATGGGGCCATCGGTGGGGTGATGCTGAGACG
AGGCTGATAGACGAGCGCACAATCTGGTGTGCATTTCCGTAACGAGCCAGAATGCAGGGTAAACG
GGTTGAAAGGGGAAGGGAGCTCGTAGCGGGGGATTCGTAGCGGGACCGATAGCGGTTCTTTTCGT
GGCATTCTACGTGGGATCGGATTACCCAATATTGCAAACGCCTCGAATTGCGCATCTGCGTCATT
AGCCGTATGGCTTAGAGGCTAGATAGTGGATGAACCTTTTAGACTGACTAAAGGAACCGAGAAAC
GAGATACCAGAGGAACAAGTAAAAGGGATACAAGAACGAGAGAAA
Found at i:36361 original size:13 final size:14
Alignment explanation
Indices: 36331--36362 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
36321 TCAAAAATAA
36331 GGGGAACATCAGTG
1 GGGGAACATCAGTG
*
36345 GGGGAACATCCGTG
1 GGGGAACATCAGTG
36359 GGGG
1 GGGG
36363 TATACAATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.50, T:0.12
Consensus pattern (14 bp):
GGGGAACATCAGTG
Left flanking sequence: Indices 35831 -- 36330
CGCAGGCTTAGCTCGGGTTGGCCGTTTGCAGTAGGCAATTTTCGTAGCGCTAGGTGGTTGCAAAC
GGCTGTCACTGTGGGGTGCACCTGCCGGCCCGGTTTCGCAGTGTAGGAGATGCGTGCTTAACCCC
GAGACTGGGCAAGCCCCATTTGGCACGCCTCATTTGTGGACGGAAGTCCACCCCAGTGTGGTGGC
CCGGCTCGACGCACTGCGTGACGGCCACCATTGTCTGGCGTGCATCGATTCCGTCCGATGGTGCG
TGCGATCACCTGGCAGTGATCTGAAACACGCCCGGAGCGAGTGTGACAGCCGGGTCGGCCCGACC
TGGTGGGGGCGGTGTGGGGCCACTACGCTAGCGCTAGTCCCGTTCGGGCACGTGGCTTTTAATGC
TTAGACAGTCTCGGTGGGGCAATCTCGGTGAGGCAATCTCGGTGAGGCTGTCTCGGTGAGAATGT
CTCGGTGAGGCTGTTTCACGTCGGAGTAAAATCAGTCAAAAATAA
Right flanking sequence: Indices 36363 -- 36862
TATACAATGGGAGTTTTGATTATATGAAACTGTAACGGAGAGGCAGACGTGAAACAGAGACGAGG
TGGAGGTGGCAGTGTCTGTTCCCCGCTAATTATGGGGCCATCGGTGGGGTGATGCTGAGACGAGG
CTGATAGACGAGCGCACAATCTGGTGTGCATTTCCGTAACGAGCCAGAATGCAGGGTAAACGGGT
TGAAAGGGGAAGGGAGCTCGTAGCGGGGGATTCGTAGCGGGACCGATAGCGGTTCTTTTCGTGGC
ATTCTACGTGGGATCGGATTACCCAATATTGCAAACGCCTCGAATTGCGCATCTGCGTCATTAGC
CGTATGGCTTAGAGGCTAGATAGTGGATGAACCTTTTAGACTGACTAAAGGAACCGAGAAACGAG
ATACCAGAGGAACAAGTAAAAGGGATACAAGAACGAGAGAAACAAGAGAAACAAAAGAAAGGGGA
TAAACAAGAGAAACATAAGAAACTAGGACAAGAGAAACAAAAACA
Found at i:36810 original size:11 final size:9
Alignment explanation
Indices: 36788--36921 Score: 52
Period size: 9 Copynumber: 15.2 Consensus size: 9
36778 TACAAGAACG
36788 AGAGAAACA
1 AGAGAAACA
36797 AGAGAAACA
1 AGAGAAACA
* **
36806 AAAGAAAGG
1 AGAGAAACA
* *
36815 GGATAAACA
1 AGAGAAACA
36824 AGAGAAACA
1 AGAGAAACA
*
36833 TA-AGAAACT
1 -AGAGAAACA
36842 AG-G--ACA
1 AGAGAAACA
36848 AGAGAAACA
1 AGAGAAACA
* *
36857 A-AAACAAGA
1 AGAGA-AACA
* *
36866 AAACGAAACT
1 AGA-GAAACA
36876 AGAGAAAC-
1 AGAGAAACA
36884 --A-AAACA
1 AGAGAAACA
36890 AGAGAAACAAA
1 AGAGAAAC--A
*
36901 ACTAGAAACA
1 A-GAGAAACA
36911 AGAGAAACA
1 AGAGAAACA
36920 AG
1 AG
36922 GACAGGGAAA
Statistics
Matches: 90, Mismatches: 20, Indels: 30
0.64 0.14 0.21
Matches are distributed among these distances:
5 4 0.04
6 5 0.06
7 1 0.01
8 5 0.06
9 58 0.64
10 8 0.09
11 3 0.03
12 6 0.07
ACGTcount: A:0.65, C:0.12, G:0.19, T:0.04
Consensus pattern (9 bp):
AGAGAAACA
Left flanking sequence: Indices 36288 -- 36787
CGGTGAGGCTGTTTCACGTCGGAGTAAAATCAGTCAAAAATAAGGGGAACATCAGTGGGGGAACA
TCCGTGGGGGTATACAATGGGAGTTTTGATTATATGAAACTGTAACGGAGAGGCAGACGTGAAAC
AGAGACGAGGTGGAGGTGGCAGTGTCTGTTCCCCGCTAATTATGGGGCCATCGGTGGGGTGATGC
TGAGACGAGGCTGATAGACGAGCGCACAATCTGGTGTGCATTTCCGTAACGAGCCAGAATGCAGG
GTAAACGGGTTGAAAGGGGAAGGGAGCTCGTAGCGGGGGATTCGTAGCGGGACCGATAGCGGTTC
TTTTCGTGGCATTCTACGTGGGATCGGATTACCCAATATTGCAAACGCCTCGAATTGCGCATCTG
CGTCATTAGCCGTATGGCTTAGAGGCTAGATAGTGGATGAACCTTTTAGACTGACTAAAGGAACC
GAGAAACGAGATACCAGAGGAACAAGTAAAAGGGATACAAGAACG
Right flanking sequence: Indices 36922 -- 37421
GACAGGGAAACAAAGAGAACCCTGAAAACCCAAACAAACCTGAAAATCCAGTTGTATGCTTAAAC
GTTGCATTGGACTGCAAAACACTGCAACCCGGCTAAACAGGCGCTGGGTGTACTTGTGGAGCATA
CTTTAAGCCCCTTTATCACTGTGGCGCTCAATGCCCCTGAAGTCACTTGGAGTCTTCTGGGTAGT
CGCTACCCTAGACAATCCCCCAGATGCATTGAGTCCCTACGAACAGTTCTATACCCACAACCATG
ACAATCGCACTGGAGTCGCGCTACTCTCCATTCCGTTCCACTCCTCCAGTAACCACCTAATTTCC
ACAGGCTCTCTACAATCCATTCTTCCACCCTCACCCAGCTATCATTGGAACCATGACTCTCAACC
CATCACGCTAGTCCCCATACGTTCGCACTAGTCTCCACCATCACGCTTATCTTCGCACTAGACTA
CTTCATCCATTACTCTCCAATCCGTACCAGTCTCAATCCGTTCCT
Found at i:36879 original size:28 final size:28
Alignment explanation
Indices: 36848--36906 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
36838 AACTAGGACA
*
36848 AGAGAAACAAAAACAAGA-AAACGAAACT
1 AGAGAAAC-AAAACAAGAGAAACAAAACT
36876 AGAGAAACAAAACAAGAGAAACAAAACT
1 AGAGAAACAAAACAAGAGAAACAAAACT
36904 AGA
1 AGA
36907 AACAAGAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 9 0.31
28 20 0.69
ACGTcount: A:0.68, C:0.14, G:0.15, T:0.03
Consensus pattern (28 bp):
AGAGAAACAAAACAAGAGAAACAAAACT
Left flanking sequence: Indices 36348 -- 36847
GAACATCCGTGGGGGTATACAATGGGAGTTTTGATTATATGAAACTGTAACGGAGAGGCAGACGT
GAAACAGAGACGAGGTGGAGGTGGCAGTGTCTGTTCCCCGCTAATTATGGGGCCATCGGTGGGGT
GATGCTGAGACGAGGCTGATAGACGAGCGCACAATCTGGTGTGCATTTCCGTAACGAGCCAGAAT
GCAGGGTAAACGGGTTGAAAGGGGAAGGGAGCTCGTAGCGGGGGATTCGTAGCGGGACCGATAGC
GGTTCTTTTCGTGGCATTCTACGTGGGATCGGATTACCCAATATTGCAAACGCCTCGAATTGCGC
ATCTGCGTCATTAGCCGTATGGCTTAGAGGCTAGATAGTGGATGAACCTTTTAGACTGACTAAAG
GAACCGAGAAACGAGATACCAGAGGAACAAGTAAAAGGGATACAAGAACGAGAGAAACAAGAGAA
ACAAAAGAAAGGGGATAAACAAGAGAAACATAAGAAACTAGGACA
Right flanking sequence: Indices 36907 -- 37406
AACAAGAGAAACAAGGACAGGGAAACAAAGAGAACCCTGAAAACCCAAACAAACCTGAAAATCCA
GTTGTATGCTTAAACGTTGCATTGGACTGCAAAACACTGCAACCCGGCTAAACAGGCGCTGGGTG
TACTTGTGGAGCATACTTTAAGCCCCTTTATCACTGTGGCGCTCAATGCCCCTGAAGTCACTTGG
AGTCTTCTGGGTAGTCGCTACCCTAGACAATCCCCCAGATGCATTGAGTCCCTACGAACAGTTCT
ATACCCACAACCATGACAATCGCACTGGAGTCGCGCTACTCTCCATTCCGTTCCACTCCTCCAGT
AACCACCTAATTTCCACAGGCTCTCTACAATCCATTCTTCCACCCTCACCCAGCTATCATTGGAA
CCATGACTCTCAACCCATCACGCTAGTCCCCATACGTTCGCACTAGTCTCCACCATCACGCTTAT
CTTCGCACTAGACTACTTCATCCATTACTCTCCAATCCGTACCAG
Found at i:36883 original size:14 final size:14
Alignment explanation
Indices: 36845--36902 Score: 82
Period size: 14 Copynumber: 4.1 Consensus size: 14
36835 AGAAACTAGG
36845 ACAAGAGAAACAAAA
1 ACAAGAGAAAC-AAA
*
36860 ACAAGA-AAACGAA
1 ACAAGAGAAACAAA
*
36873 ACTAGAGAAACAAA
1 ACAAGAGAAACAAA
36887 ACAAGAGAAACAAA
1 ACAAGAGAAACAAA
36901 AC
1 AC
36903 TAGAAACAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
13 7 0.18
14 25 0.66
15 6 0.16
ACGTcount: A:0.69, C:0.16, G:0.14, T:0.02
Consensus pattern (14 bp):
ACAAGAGAAACAAA
Left flanking sequence: Indices 36345 -- 36844
GGGGAACATCCGTGGGGGTATACAATGGGAGTTTTGATTATATGAAACTGTAACGGAGAGGCAGA
CGTGAAACAGAGACGAGGTGGAGGTGGCAGTGTCTGTTCCCCGCTAATTATGGGGCCATCGGTGG
GGTGATGCTGAGACGAGGCTGATAGACGAGCGCACAATCTGGTGTGCATTTCCGTAACGAGCCAG
AATGCAGGGTAAACGGGTTGAAAGGGGAAGGGAGCTCGTAGCGGGGGATTCGTAGCGGGACCGAT
AGCGGTTCTTTTCGTGGCATTCTACGTGGGATCGGATTACCCAATATTGCAAACGCCTCGAATTG
CGCATCTGCGTCATTAGCCGTATGGCTTAGAGGCTAGATAGTGGATGAACCTTTTAGACTGACTA
AAGGAACCGAGAAACGAGATACCAGAGGAACAAGTAAAAGGGATACAAGAACGAGAGAAACAAGA
GAAACAAAAGAAAGGGGATAAACAAGAGAAACATAAGAAACTAGG
Right flanking sequence: Indices 36903 -- 37402
TAGAAACAAGAGAAACAAGGACAGGGAAACAAAGAGAACCCTGAAAACCCAAACAAACCTGAAAA
TCCAGTTGTATGCTTAAACGTTGCATTGGACTGCAAAACACTGCAACCCGGCTAAACAGGCGCTG
GGTGTACTTGTGGAGCATACTTTAAGCCCCTTTATCACTGTGGCGCTCAATGCCCCTGAAGTCAC
TTGGAGTCTTCTGGGTAGTCGCTACCCTAGACAATCCCCCAGATGCATTGAGTCCCTACGAACAG
TTCTATACCCACAACCATGACAATCGCACTGGAGTCGCGCTACTCTCCATTCCGTTCCACTCCTC
CAGTAACCACCTAATTTCCACAGGCTCTCTACAATCCATTCTTCCACCCTCACCCAGCTATCATT
GGAACCATGACTCTCAACCCATCACGCTAGTCCCCATACGTTCGCACTAGTCTCCACCATCACGC
TTATCTTCGCACTAGACTACTTCATCCATTACTCTCCAATCCGTA
Found at i:37672 original size:13 final size:14
Alignment explanation
Indices: 37647--37676 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
37637 CTTCACGGCT
37647 AAAGCCAAAAAAAA
1 AAAGCCAAAAAAAA
37661 AAAGCCAAAAAAAA
1 AAAGCCAAAAAAAA
37675 AA
1 AA
37677 TGGAGCGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.80, C:0.13, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAGCCAAAAAAAA
Left flanking sequence: Indices 37147 -- 37646
GAGTCCCTACGAACAGTTCTATACCCACAACCATGACAATCGCACTGGAGTCGCGCTACTCTCCA
TTCCGTTCCACTCCTCCAGTAACCACCTAATTTCCACAGGCTCTCTACAATCCATTCTTCCACCC
TCACCCAGCTATCATTGGAACCATGACTCTCAACCCATCACGCTAGTCCCCATACGTTCGCACTA
GTCTCCACCATCACGCTTATCTTCGCACTAGACTACTTCATCCATTACTCTCCAATCCGTACCAG
TCTCAATCCGTTCCTCTGATCTAAAAGCGGCCTGTTTCTCTCCTTCGCACTAGTCCATTCCTACT
CTTCGCACTAGTCTCTATTCTCCACTCTCTTCCATTCCACTCTTCGCACTCATTCCTTCTTACTT
CTCCTCCACACTAGTCTTCTCTACTCTCTAACCGCGAACTTCTATTATAAAAATGTCTCTATAAA
AACCCAGTTTCATAAGGAGGCAACAACCAAAGCGTCTTCACGGCT
Right flanking sequence: Indices 37677 -- 38176
TGGAGCGTCAAGGTAGCAGGTCCCCTACAGTAACCCAAAGGGGCACCTAGGGACCTACGGGCTTA
CTTCGACGACCCGATGAGGTCGGAAAACGAGATTTTCTGGCCTTGGGGCACCACCGGAGCGGCGT
AGGGGGGCGGGTGTTGGAAGTGGGTCACGTAGGGCACCGCGCCCGCGGGCCCAGCACCAGGCTGG
GGCGGGTACATGATGTAGCCCTGCGGGTTGACCTGGTAGGTGAACCCCGACTGGATGTTGGCGGG
CATGTTGGGCACCATCATCGGGGGCATCATCGGGTACGCCCCCATCGCCGGGTTGGGAGCCATGG
GCATCGCCCCGTTGGGAGCCCGGCTCGCCTGGGGGGTCAGCTGGTGGGGGGTGGCGGGCACCGAC
CCCAGCGGGTAGGCGGTGACGGCGTTTTTGGGGGGCAGCTTCGAAAACAGCGGTTTCGGGAGCGC
CACCGCCTCGGGCAGCAGGTGGAACAGCCCGCCGGCGTACAGGTC
Found at i:39093 original size:11 final size:11
Alignment explanation
Indices: 39079--39106 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
39069 CGTGGGGTTG
39079 GGTGCAACCCA
1 GGTGCAACCCA
39090 GGTGCAACCCA
1 GGTGCAACCCA
39101 GGTGCA
1 GGTGCA
39107 CCTATTGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.32, G:0.32, T:0.11
Consensus pattern (11 bp):
GGTGCAACCCA
Left flanking sequence: Indices 38579 -- 39078
CGGGCATTGGGGGCCCGGGCGGGTGGTTCCACGGTGTTTTGGGGGGGTTGGGTGGTGCGGGTGCG
GTGCTGGCGGGGTGGCTTTGTGGGCGCTACGTGGTTTCGTTTGTTGTTGTTTGTGACTAATCGGT
TGCAAAATGGCTGCAAATCCACCATCGCGCACAGGGCACACGCACACGCACGGCACCGCCGTCGC
GCCGGTGGGAGAAGCTACGGGGGCCGATACAGTGGTCTACGGGGTTGTGTATGGTGGCTGGGGTG
TCACGCCGTCCGGTGGGGGCGGCTCGCCACCCGGGAGCCTGCCCGGTGACTCAATGGTGCTTATC
ATATGACATTTATAGGGGTAGTGTAAACACGTTGCACGCACTGCGTGGGTGCGTTTTGAATGACT
CCTGCGCCCCATGGGGCCACTGACGGTGGCAACTGCTGCTACGACAGACGGACAACTACTGGCGG
TGTTTATTGAATGCATGCTTGCAAGGTGGGTGATACGTGGGGTTG
Right flanking sequence: Indices 39107 -- 39606
CCTATTGTGCAAGGCGCGGCACGCATGATCACCAATGCAAGAGAAGGTGGTGGTGGATCGGTCGA
AAAGGTACGTAAGTAGTTTTGTTTGTTCTGAAAGCGGTTGGGTGGTGTGGGTGGTGTGGGAGGTA
GGGAGGTGAAGTGAAGGAATGGGTCAATTGTTTTGTGAGCCAATGATACCAAGGGGATGAGCCAA
TGGTTGGTGGAGAGTGGAAAAGAACAAGTTAAGGAAGGGGGGTTAGTGAATTGAATTAGTGTGTG
AGACGTGCGAGTTGGTAAAGTGGCCATTGACAACCATAGTAGCCATTGGCCACCGTAGTAGTCAT
TGACCACCGTAGTAGCCATTGGCCACCGTAGTAGCCATTGACCACAGCACACGCACTGCACCCGC
ACCACACCCACACCACACCCACCACTTACGACACATAGATCCCAGAAACACCAATCATCCCCATC
CCAACACAACACCAAACCATCGCCCGGTTAAGCAGCCCCCCGAAA
Found at i:39413 original size:19 final size:19
Alignment explanation
Indices: 39389--39476 Score: 131
Period size: 19 Copynumber: 4.6 Consensus size: 19
39379 TGGTAAAGTG
* *
39389 GCCATTGACAACCATAGTA
1 GCCATTGACCACCGTAGTA
*
39408 GCCATTGGCCACCGTAGTA
1 GCCATTGACCACCGTAGTA
*
39427 GTCATTGACCACCGTAGTA
1 GCCATTGACCACCGTAGTA
*
39446 GCCATTGGCCACCGTAGTA
1 GCCATTGACCACCGTAGTA
39465 GCCATTGACCAC
1 GCCATTGACCAC
39477 AGCACACGCA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 61 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (19 bp):
GCCATTGACCACCGTAGTA
Left flanking sequence: Indices 38889 -- 39388
TCAATGGTGCTTATCATATGACATTTATAGGGGTAGTGTAAACACGTTGCACGCACTGCGTGGGT
GCGTTTTGAATGACTCCTGCGCCCCATGGGGCCACTGACGGTGGCAACTGCTGCTACGACAGACG
GACAACTACTGGCGGTGTTTATTGAATGCATGCTTGCAAGGTGGGTGATACGTGGGGTTGGGTGC
AACCCAGGTGCAACCCAGGTGCACCTATTGTGCAAGGCGCGGCACGCATGATCACCAATGCAAGA
GAAGGTGGTGGTGGATCGGTCGAAAAGGTACGTAAGTAGTTTTGTTTGTTCTGAAAGCGGTTGGG
TGGTGTGGGTGGTGTGGGAGGTAGGGAGGTGAAGTGAAGGAATGGGTCAATTGTTTTGTGAGCCA
ATGATACCAAGGGGATGAGCCAATGGTTGGTGGAGAGTGGAAAAGAACAAGTTAAGGAAGGGGGG
TTAGTGAATTGAATTAGTGTGTGAGACGTGCGAGTTGGTAAAGTG
Right flanking sequence: Indices 39477 -- 39976
AGCACACGCACTGCACCCGCACCACACCCACACCACACCCACCACTTACGACACATAGATCCCAG
AAACACCAATCATCCCCATCCCAACACAACACCAAACCATCGCCCGGTTAAGCAGCCCCCCGAAA
CTCACAGTCAGCCCAAACAACTGGAGCCCGACCACAGTCAAAAACCCCGCGGTCACCGCAAGCGT
AAGCCCAAAAATCCAGTTCAAGTGGCCCTCGTACCCAGACCGGTTAGAGTTGTACCGCAAGAAAA
GCAGCCCAGCAAGCGCACCCAACGGCTGGGAGAACCCACCCAACACCGCCAGAATCAGCGCAGCC
TTGAGCTTGGCCCACCGCGGGTGCGGGCCAGCATTGAAACTGTAGTAGAGGGGCATGCACATGGT
GAACCCCTCAGTCAAGTTGTGGGCCAAAAGCGACAAAAAGATCAGAAGCCCCAACGTGGGGTCGG
TTTGCAGAGTCACGTAGGTGATGAACCCCTCGGGAAACTTGTGGA
Found at i:39474 original size:38 final size:38
Alignment explanation
Indices: 39389--39476 Score: 149
Period size: 38 Copynumber: 2.3 Consensus size: 38
39379 TGGTAAAGTG
*
39389 GCCATTGACAACCATAGTAGCCATTGGCCACCGTAGTA
1 GCCATTGACCACCATAGTAGCCATTGGCCACCGTAGTA
* *
39427 GTCATTGACCACCGTAGTAGCCATTGGCCACCGTAGTA
1 GCCATTGACCACCATAGTAGCCATTGGCCACCGTAGTA
39465 GCCATTGACCAC
1 GCCATTGACCAC
39477 AGCACACGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (38 bp):
GCCATTGACCACCATAGTAGCCATTGGCCACCGTAGTA
Left flanking sequence: Indices 38889 -- 39388
TCAATGGTGCTTATCATATGACATTTATAGGGGTAGTGTAAACACGTTGCACGCACTGCGTGGGT
GCGTTTTGAATGACTCCTGCGCCCCATGGGGCCACTGACGGTGGCAACTGCTGCTACGACAGACG
GACAACTACTGGCGGTGTTTATTGAATGCATGCTTGCAAGGTGGGTGATACGTGGGGTTGGGTGC
AACCCAGGTGCAACCCAGGTGCACCTATTGTGCAAGGCGCGGCACGCATGATCACCAATGCAAGA
GAAGGTGGTGGTGGATCGGTCGAAAAGGTACGTAAGTAGTTTTGTTTGTTCTGAAAGCGGTTGGG
TGGTGTGGGTGGTGTGGGAGGTAGGGAGGTGAAGTGAAGGAATGGGTCAATTGTTTTGTGAGCCA
ATGATACCAAGGGGATGAGCCAATGGTTGGTGGAGAGTGGAAAAGAACAAGTTAAGGAAGGGGGG
TTAGTGAATTGAATTAGTGTGTGAGACGTGCGAGTTGGTAAAGTG
Right flanking sequence: Indices 39477 -- 39976
AGCACACGCACTGCACCCGCACCACACCCACACCACACCCACCACTTACGACACATAGATCCCAG
AAACACCAATCATCCCCATCCCAACACAACACCAAACCATCGCCCGGTTAAGCAGCCCCCCGAAA
CTCACAGTCAGCCCAAACAACTGGAGCCCGACCACAGTCAAAAACCCCGCGGTCACCGCAAGCGT
AAGCCCAAAAATCCAGTTCAAGTGGCCCTCGTACCCAGACCGGTTAGAGTTGTACCGCAAGAAAA
GCAGCCCAGCAAGCGCACCCAACGGCTGGGAGAACCCACCCAACACCGCCAGAATCAGCGCAGCC
TTGAGCTTGGCCCACCGCGGGTGCGGGCCAGCATTGAAACTGTAGTAGAGGGGCATGCACATGGT
GAACCCCTCAGTCAAGTTGTGGGCCAAAAGCGACAAAAAGATCAGAAGCCCCAACGTGGGGTCGG
TTTGCAGAGTCACGTAGGTGATGAACCCCTCGGGAAACTTGTGGA
Found at i:40985 original size:21 final size:21
Alignment explanation
Indices: 40955--41030 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
40945 GTTATGTGCC
* * *
40955 GGAGGTGGGGGAGAGGAGATG
1 GGAGGCGGGGGAGAAGCGATG
** *
40976 GGAGGCGGGGGCCACGCGATG
1 GGAGGCGGGGGAGAAGCGATG
40997 GGAGGCGGGGGAGAAAGCGA-G
1 GGAGGCGGGGGAG-AAGCGATG
41018 GGAGGCGGGGGAG
1 GGAGGCGGGGGAG
41031 GTGTTGGCAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
21 41 0.89
22 5 0.11
ACGTcount: A:0.21, C:0.11, G:0.64, T:0.04
Consensus pattern (21 bp):
GGAGGCGGGGGAGAAGCGATG
Left flanking sequence: Indices 40455 -- 40954
AACATCGAGCCCGTGGGAACAGTGTACCACCAGCTCGGACGTGAGCAAATGGAGCAAGTACGAGA
AGCCAAGGTAGACAACCACCCCGCTGAAGTACGCACCAATCAACGCCAACTCCACCCGGCGCTCA
GGCGGCGGCTTGGCCCCAGACTCCGAGTGTTCGTCGTCCCATCCCGCCCGCAAAAACAGCTGGGC
CTCGGGGAGCAACCGAAACAACAGGGTAAAGAGAAGCCCGCCACTGGAGAACGCCATGGCGTTGG
TCATGAACAGGTAGTTCCGTTCGAGCTTCAACGGCCACCGGCGGGTGATGGCCCGGGGAAGCAAC
CATTGGTAGATATTTTCCACGTAGATCAAGAGGGTGCCCGTGACGCACAAGAGCGAGCTGAGGAT
GGTGAGCGTCCACCCCTGATTGTTTTCAAACAACATTGGATCAGGTGGTGGGGGCAGACAACGTG
GGTTTTATCGACTGCTACCTTGACGGTTAATGTCGGTTATGTGCC
Right flanking sequence: Indices 41031 -- 41530
GTGTTGGCATAGGGGAGATGTGCTCTGTTAGCTGGCTACGTGGTGGGGTGGTTGGCATCGGGGTT
CGTTGACACAGCCCGGTGCTGTCAATTCCCGATCAAGAGCCGTGCATGGCGGCGCGCGGATGTCT
CCCCGACGTGTTTGTGAAGAGATGTTGCAACGGGGAGTGAAACGATGATTTTGTGTAAGGGCTAG
CCCCTCGTAGCTGGGCTTGCTCGGTGGTTTCTACGGGTGTCTTTTGTTTTGGGCGATTTTTCACC
GTTTCTGGCGGGATAGTCCGGGGTAGCCCGCCGATCACGTCACGGTCGCGTGCTAGTGGTTACCA
CGACCGTCACAGTTATGCGTCGTGTTGACGGGCTTTTCACATAATTTGCTCTGGGCCCCGATTCA
CCCGTCAGTTGATCTATTGTTCGCTGCGTGGAGGCTTGGCCAGGGCACGGGAGCCAATAGAGACG
AGACAATAGGTGATGTGGGTGATGAAAGCCTGATTTTGTGTCGGT
Found at i:42098 original size:13 final size:13
Alignment explanation
Indices: 42082--42121 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
42072 AGCCCATCAG
42082 ATAACCCCATACA
1 ATAACCCCATACA
* *
42095 ATAACCCCTTACG
1 ATAACCCCATACA
*
42108 ATAACCCCGTACA
1 ATAACCCCATACA
42121 A
1 A
42122 CCCCATACGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.40, C:0.38, G:0.05, T:0.17
Consensus pattern (13 bp):
ATAACCCCATACA
Left flanking sequence: Indices 41582 -- 42081
GTCGTGAGGAGCTGCCGTGGCGACGGGGTTTTTGACGTGTAGCAGACGTGGGACCGCAGCCGTGT
GGCCGTTTATAGCTGCCTTCGGGTGAGAAGGAAGGGTTGATGAGCGAGAGGTTTTTACGAGCTTG
GGGTCGAGTCAGCAGCCCACTGAATTGGGGGAGAAAGATCTAGGGACGTTGATGATAAGGAACAG
TCAGATGAAACTGGAGATGTGGATCTGGTGACACCATCGTATTGTGTGCTGTGGCACGATGTTAC
CAATTCACATTTTCCAGATTCGGTGAAATTGGTGAAAAATTGTTAAAAGTACGGAGTCAGGGTTA
GAGAAGGGGAAGAACACGGACGTATGCGGTTCGAATCCAGACCACAGCATGGTGTTAGCACGTAA
ACCCCAAAACCCACTCAATTGACTAGCACGGCTGTTTGTACCGCGCGGTCCCTTTCACTAAGTCG
AGTCGAGACCTACGTGATAGATCAAATAGCCAAGAAGCCCATCAG
Right flanking sequence: Indices 42122 -- 42621
CCCCATACGACAACCCGTACCACACCCCCTACAATAACCTCTCAGAACAACTCATGAGCCCAATT
TTTCACCCCTTCCCGTCCGATCAGATCTCGTATATTCCCCGATCGAGCCAAACCCCGGTCCACCA
CCCTACGTCCAATTGAAACACCACTAACCGACCAAGCCCCATTCCACCTAAGCCCCACAACCTCC
CCCCACTTTCCCACGTCCCACGTCCCACGTCCCACGTCTCCACCTCCCCACTACCCTACTTCAAC
CACCCTACTCCCTTCGCGTCTTCCCCACCTTTGATCCCCATTACGTCATCACAATACCACCACCA
CCACCACCCACCCACCGCATTCCCGGCCCCCCACCGCCGCCAAGCCACCNCCCCACCGCCGCCAA
GCCACCCAGCCACCGGGCCACCCACCCAAACCACCCGCCCAAACCACCCACCGCCCAATTGACCG
CCGCGAGCCCGTGCCTCGCCCCCTTGCGGCTTTTTGCCACCCACC
Found at i:42130 original size:23 final size:24
Alignment explanation
Indices: 42097--42160 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
42087 CCCATACAAT
*
42097 AACCCCTTACGATAACCCCGTA-C
1 AACCCCATACGATAACCCCGTACC
*
42120 AACCCCATACGACAA-CCCGTACC
1 AACCCCATACGATAACCCCGTACC
* *
42143 ACACCCCCTACAATAACC
1 A-ACCCCATACGATAACC
42161 TCTCAGAACA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 6 0.18
23 15 0.45
24 11 0.33
25 1 0.03
ACGTcount: A:0.34, C:0.47, G:0.06, T:0.12
Consensus pattern (24 bp):
AACCCCATACGATAACCCCGTACC
Left flanking sequence: Indices 41597 -- 42096
CGTGGCGACGGGGTTTTTGACGTGTAGCAGACGTGGGACCGCAGCCGTGTGGCCGTTTATAGCTG
CCTTCGGGTGAGAAGGAAGGGTTGATGAGCGAGAGGTTTTTACGAGCTTGGGGTCGAGTCAGCAG
CCCACTGAATTGGGGGAGAAAGATCTAGGGACGTTGATGATAAGGAACAGTCAGATGAAACTGGA
GATGTGGATCTGGTGACACCATCGTATTGTGTGCTGTGGCACGATGTTACCAATTCACATTTTCC
AGATTCGGTGAAATTGGTGAAAAATTGTTAAAAGTACGGAGTCAGGGTTAGAGAAGGGGAAGAAC
ACGGACGTATGCGGTTCGAATCCAGACCACAGCATGGTGTTAGCACGTAAACCCCAAAACCCACT
CAATTGACTAGCACGGCTGTTTGTACCGCGCGGTCCCTTTCACTAAGTCGAGTCGAGACCTACGT
GATAGATCAAATAGCCAAGAAGCCCATCAGATAACCCCATACAAT
Right flanking sequence: Indices 42161 -- 42660
TCTCAGAACAACTCATGAGCCCAATTTTTCACCCCTTCCCGTCCGATCAGATCTCGTATATTCCC
CGATCGAGCCAAACCCCGGTCCACCACCCTACGTCCAATTGAAACACCACTAACCGACCAAGCCC
CATTCCACCTAAGCCCCACAACCTCCCCCCACTTTCCCACGTCCCACGTCCCACGTCCCACGTCT
CCACCTCCCCACTACCCTACTTCAACCACCCTACTCCCTTCGCGTCTTCCCCACCTTTGATCCCC
ATTACGTCATCACAATACCACCACCACCACCACCCACCCACCGCATTCCCGGCCCCCCACCGCCG
CCAAGCCACCNCCCCACCGCCGCCAAGCCACCCAGCCACCGGGCCACCCACCCAAACCACCCGCC
CAAACCACCCACCGCCCAATTGACCGCCGCGAGCCCGTGCCTCGCCCCCTTGCGGCTTTTTGCCA
CCCACCGGTAAGGCTTTTTTTCCCCCCTATATAAACAGCGCGGAC
Found at i:42337 original size:7 final size:7
Alignment explanation
Indices: 42325--42364 Score: 62
Period size: 7 Copynumber: 5.6 Consensus size: 7
42315 CCCCCCACTT
42325 TCCCACG
1 TCCCACG
42332 TCCCACG
1 TCCCACG
42339 TCCCACG
1 TCCCACG
42346 TCCCACG
1 TCCCACG
*
42353 TCTCCACC
1 TC-CCACG
42361 TCCC
1 TCCC
42365 CACTACCCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 25 0.81
8 6 0.19
ACGTcount: A:0.12, C:0.60, G:0.10, T:0.17
Consensus pattern (7 bp):
TCCCACG
Left flanking sequence: Indices 41825 -- 42324
CTGTGGCACGATGTTACCAATTCACATTTTCCAGATTCGGTGAAATTGGTGAAAAATTGTTAAAA
GTACGGAGTCAGGGTTAGAGAAGGGGAAGAACACGGACGTATGCGGTTCGAATCCAGACCACAGC
ATGGTGTTAGCACGTAAACCCCAAAACCCACTCAATTGACTAGCACGGCTGTTTGTACCGCGCGG
TCCCTTTCACTAAGTCGAGTCGAGACCTACGTGATAGATCAAATAGCCAAGAAGCCCATCAGATA
ACCCCATACAATAACCCCTTACGATAACCCCGTACAACCCCATACGACAACCCGTACCACACCCC
CTACAATAACCTCTCAGAACAACTCATGAGCCCAATTTTTCACCCCTTCCCGTCCGATCAGATCT
CGTATATTCCCCGATCGAGCCAAACCCCGGTCCACCACCCTACGTCCAATTGAAACACCACTAAC
CGACCAAGCCCCATTCCACCTAAGCCCCACAACCTCCCCCCACTT
Right flanking sequence: Indices 42365 -- 42864
CACTACCCTACTTCAACCACCCTACTCCCTTCGCGTCTTCCCCACCTTTGATCCCCATTACGTCA
TCACAATACCACCACCACCACCACCCACCCACCGCATTCCCGGCCCCCCACCGCCGCCAAGCCAC
CNCCCCACCGCCGCCAAGCCACCCAGCCACCGGGCCACCCACCCAAACCACCCGCCCAAACCACC
CACCGCCCAATTGACCGCCGCGAGCCCGTGCCTCGCCCCCTTGCGGCTTTTTGCCACCCACCGGT
AAGGCTTTTTTTCCCCCCTATATAAACAGCGCGGACATGTGGCGGCGAACACTATTGCAACCGCT
CCGTTTCTGTCTGTACCGGTCGAACATGTGTCGCTACGCCAACGCTGCTGCCACCAGCTTGCCCG
GGAAGGAGGTGCTCCCCTCCAACGTCAAGCCCCTCCACTACCACTTGCGTTTGGAGCCCCTCTTC
TCCAACTTCACCTTCAAGGGTGAGGAGACCATTGAGTTCGACGTC
Found at i:42500 original size:22 final size:21
Alignment explanation
Indices: 42473--42518 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 21
42463 GCATTCCCGG
42473 CCCCCCACCGCCGCCAAGCCA
1 CCCCCCACCGCCGCCAAGCCA
42494 CCNCCCCACCGCCGCCAAGCCA
1 CC-CCCCACCGCCGCCAAGCCA
42516 CCC
1 CCC
42519 AGCCACCGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.17, C:0.67, G:0.13, T:0.00
Consensus pattern (21 bp):
CCCCCCACCGCCGCCAAGCCA
Left flanking sequence: Indices 41973 -- 42472
CCCCAAAACCCACTCAATTGACTAGCACGGCTGTTTGTACCGCGCGGTCCCTTTCACTAAGTCGA
GTCGAGACCTACGTGATAGATCAAATAGCCAAGAAGCCCATCAGATAACCCCATACAATAACCCC
TTACGATAACCCCGTACAACCCCATACGACAACCCGTACCACACCCCCTACAATAACCTCTCAGA
ACAACTCATGAGCCCAATTTTTCACCCCTTCCCGTCCGATCAGATCTCGTATATTCCCCGATCGA
GCCAAACCCCGGTCCACCACCCTACGTCCAATTGAAACACCACTAACCGACCAAGCCCCATTCCA
CCTAAGCCCCACAACCTCCCCCCACTTTCCCACGTCCCACGTCCCACGTCCCACGTCTCCACCTC
CCCACTACCCTACTTCAACCACCCTACTCCCTTCGCGTCTTCCCCACCTTTGATCCCCATTACGT
CATCACAATACCACCACCACCACCACCCACCCACCGCATTCCCGG
Right flanking sequence: Indices 42519 -- 43018
AGCCACCGGGCCACCCACCCAAACCACCCGCCCAAACCACCCACCGCCCAATTGACCGCCGCGAG
CCCGTGCCTCGCCCCCTTGCGGCTTTTTGCCACCCACCGGTAAGGCTTTTTTTCCCCCCTATATA
AACAGCGCGGACATGTGGCGGCGAACACTATTGCAACCGCTCCGTTTCTGTCTGTACCGGTCGAA
CATGTGTCGCTACGCCAACGCTGCTGCCACCAGCTTGCCCGGGAAGGAGGTGCTCCCCTCCAACG
TCAAGCCCCTCCACTACCACTTGCGTTTGGAGCCCCTCTTCTCCAACTTCACCTTCAAGGGTGAG
GAGACCATTGAGTTCGACGTCAACGAGGACACCGACTACATCACGTTGAACCTGTTGGAGATCAA
GGTCAACTCGGCCGCGCTCAATGAGGTGCCCGTCAAGGACATCTCGTTCGACGAGGACAAGCAGA
CCGTCACCTTCCAGTTGGCGGACGCCCTCAAGAAGGGGTCCAAGG
Found at i:42547 original size:13 final size:13
Alignment explanation
Indices: 42529--42563 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
42519 AGCCACCGGG
42529 CCACCCACCCAAA
1 CCACCCACCCAAA
*
42542 CCACCCGCCCAAA
1 CCACCCACCCAAA
42555 CCACCCACC
1 CCACCCACC
42564 GCCCAATTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.31, C:0.66, G:0.03, T:0.00
Consensus pattern (13 bp):
CCACCCACCCAAA
Left flanking sequence: Indices 42029 -- 42528
CTAAGTCGAGTCGAGACCTACGTGATAGATCAAATAGCCAAGAAGCCCATCAGATAACCCCATAC
AATAACCCCTTACGATAACCCCGTACAACCCCATACGACAACCCGTACCACACCCCCTACAATAA
CCTCTCAGAACAACTCATGAGCCCAATTTTTCACCCCTTCCCGTCCGATCAGATCTCGTATATTC
CCCGATCGAGCCAAACCCCGGTCCACCACCCTACGTCCAATTGAAACACCACTAACCGACCAAGC
CCCATTCCACCTAAGCCCCACAACCTCCCCCCACTTTCCCACGTCCCACGTCCCACGTCCCACGT
CTCCACCTCCCCACTACCCTACTTCAACCACCCTACTCCCTTCGCGTCTTCCCCACCTTTGATCC
CCATTACGTCATCACAATACCACCACCACCACCACCCACCCACCGCATTCCCGGCCCCCCACCGC
CGCCAAGCCACCNCCCCACCGCCGCCAAGCCACCCAGCCACCGGG
Right flanking sequence: Indices 42564 -- 43063
GCCCAATTGACCGCCGCGAGCCCGTGCCTCGCCCCCTTGCGGCTTTTTGCCACCCACCGGTAAGG
CTTTTTTTCCCCCCTATATAAACAGCGCGGACATGTGGCGGCGAACACTATTGCAACCGCTCCGT
TTCTGTCTGTACCGGTCGAACATGTGTCGCTACGCCAACGCTGCTGCCACCAGCTTGCCCGGGAA
GGAGGTGCTCCCCTCCAACGTCAAGCCCCTCCACTACCACTTGCGTTTGGAGCCCCTCTTCTCCA
ACTTCACCTTCAAGGGTGAGGAGACCATTGAGTTCGACGTCAACGAGGACACCGACTACATCACG
TTGAACCTGTTGGAGATCAAGGTCAACTCGGCCGCGCTCAATGAGGTGCCCGTCAAGGACATCTC
GTTCGACGAGGACAAGCAGACCGTCACCTTCCAGTTGGCGGACGCCCTCAAGAAGGGGTCCAAGG
CCAGCCTCGCGCTCGACTTTGTCGGCGAGCTCAACGACAAGATGG
Found at i:45374 original size:35 final size:36
Alignment explanation
Indices: 45322--45392 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
45312 AAAGTAGAGT
*
45322 AGATAGAACAAGGATATGGTTT-GA-GAGGTGTAGG
1 AGATAGAACAAGGATATGGTTTAGACGACGTGTAGG
**
45356 AGATAGAAACAATTATATGGTTTAGACGACGTGTAGG
1 AGATAG-AACAAGGATATGGTTTAGACGACGTGTAGG
45393 GGTGAAGAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
34 6 0.19
35 14 0.45
36 2 0.06
37 9 0.29
ACGTcount: A:0.37, C:0.06, G:0.32, T:0.25
Consensus pattern (36 bp):
AGATAGAACAAGGATATGGTTTAGACGACGTGTAGG
Left flanking sequence: Indices 44822 -- 45321
AGCAGGGCGGGGCCCAGGAGTACGAGCAGTTGTTCCACATCTACACCCACCCCAACAACACCGAG
GAGAAGATTGCCGCGTTGCGGGCGTTGGGGCGGTTCACCGACGACGCCATCCTCGACAAGGTGTG
CGGGCTCTTGCTCCAGACCGACGTGGTCAAGCAGCAGGACATCTACATTCCCATGCAGGGGTTGC
GTGCCCACCGCAAGGGGATTGAGAAGTTGTGGAGCTGGTTGCAGGAGAACTGGGCCAAGGTGTAC
GAGTTGTTGCCTCCCGGGTTGCTGATGTTGGGGTCGGTGGTGACCATTGCCACGCTGGGGTTCAC
CAAGGAGGAGCAGAAGAAGGAGGTCGAGGCGTACTTTGCCAAGATCGACACCAAGGGGTTCGACC
AGGGGTTGGCGCAGTCGTTGGACGTGATCACCTCGAAGGCCAACTGGTCGTCGCGCGACTACGAC
GTGATTGCGAAGTGGTTGGGTGAGAACGGGTACAAAAAGTAGAGT
Right flanking sequence: Indices 45393 -- 45892
GGTGAAGAGTGGTATTGCGATGGGAGAGTCTTGTGACGGGTAGTATAGCGATGAGTGGTATTGAG
TGGTATTGCGATTTGGGAGAGTATTGCGTTGGGAGTGTATTGCGATACGAGTGTCTGGCGGTTTG
GGAGTGTATTGAAAATGTTAAGAAATCTATGTTACTTGGGTATTATGAAACTTTTAACCGAAATA
CAGCCACCAATTGCCACTTATTGGCAGGCGATTGATTCCAATAAACCTGGTTCGAAATTTCTAAA
ATCTCAGACTTTGATTTGACAATTAACGGTGGCTTCGTTTCAGGTTTCTGTGCACTGGCACCACG
TGTAATCAAATAAATCACCGTTTCAAACGTACAATTTACGGGAAAGAATATTGCGACAATGGGAG
AAACGCACTCTCCGATCACGAAATTTCACCTACCGGAGGGCATTACTCAGCTGAAAAGTCAATTC
TACGGCCTTACAGTCTCCCACCCTCCTCCCACCAGCCTCCCCAGT
Found at i:45483 original size:18 final size:18
Alignment explanation
Indices: 45460--45503 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 18
45450 GTATTGAGTG
45460 GTATTGCGATTTGGGAGA
1 GTATTGCGATTTGGGAGA
*
45478 GTATTGCG--TTGGGAGT
1 GTATTGCGATTTGGGAGA
45494 GTATTGCGAT
1 GTATTGCGAT
45504 ACGAGTGTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 15 0.65
18 8 0.35
ACGTcount: A:0.18, C:0.07, G:0.39, T:0.36
Consensus pattern (18 bp):
GTATTGCGATTTGGGAGA
Left flanking sequence: Indices 44960 -- 45459
TGCTCCAGACCGACGTGGTCAAGCAGCAGGACATCTACATTCCCATGCAGGGGTTGCGTGCCCAC
CGCAAGGGGATTGAGAAGTTGTGGAGCTGGTTGCAGGAGAACTGGGCCAAGGTGTACGAGTTGTT
GCCTCCCGGGTTGCTGATGTTGGGGTCGGTGGTGACCATTGCCACGCTGGGGTTCACCAAGGAGG
AGCAGAAGAAGGAGGTCGAGGCGTACTTTGCCAAGATCGACACCAAGGGGTTCGACCAGGGGTTG
GCGCAGTCGTTGGACGTGATCACCTCGAAGGCCAACTGGTCGTCGCGCGACTACGACGTGATTGC
GAAGTGGTTGGGTGAGAACGGGTACAAAAAGTAGAGTAGATAGAACAAGGATATGGTTTGAGAGG
TGTAGGAGATAGAAACAATTATATGGTTTAGACGACGTGTAGGGGTGAAGAGTGGTATTGCGATG
GGAGAGTCTTGTGACGGGTAGTATAGCGATGAGTGGTATTGAGTG
Right flanking sequence: Indices 45504 -- 46003
ACGAGTGTCTGGCGGTTTGGGAGTGTATTGAAAATGTTAAGAAATCTATGTTACTTGGGTATTAT
GAAACTTTTAACCGAAATACAGCCACCAATTGCCACTTATTGGCAGGCGATTGATTCCAATAAAC
CTGGTTCGAAATTTCTAAAATCTCAGACTTTGATTTGACAATTAACGGTGGCTTCGTTTCAGGTT
TCTGTGCACTGGCACCACGTGTAATCAAATAAATCACCGTTTCAAACGTACAATTTACGGGAAAG
AATATTGCGACAATGGGAGAAACGCACTCTCCGATCACGAAATTTCACCTACCGGAGGGCATTAC
TCAGCTGAAAAGTCAATTCTACGGCCTTACAGTCTCCCACCCTCCTCCCACCAGCCTCCCCAGTA
GCCTGCTCCCGTATCAGACCACAATTGCCAACGTGCCCGGTACCGAGGATGGCATTTGTCAGCCA
TGCGTCCCTTTTCGTTCCGGCAACACACAGATCCGAGCGGAAAAG
Found at i:48128 original size:11 final size:11
Alignment explanation
Indices: 48112--48158 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
48102 TCCTACGACT
48112 ACAAGCAAACA
1 ACAAGCAAACA
*
48123 ACAAGCAAACG
1 ACAAGCAAACA
* *
48134 ACAAGGAAATA
1 ACAAGCAAACA
*
48145 ACAA-CCAACA
1 ACAAGCAAACA
48155 ACAA
1 ACAA
48159 CCAATATCAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
10 7 0.24
11 22 0.76
ACGTcount: A:0.62, C:0.26, G:0.11, T:0.02
Consensus pattern (11 bp):
ACAAGCAAACA
Left flanking sequence: Indices 47612 -- 48111
AGTAGTGCATCTAGAACGTTTCACTGGTAGGTGGTGACAAGCGATTGTCTAGGCGAAACGATCGT
CGTTCCAGGACGATCGCTAAGGGATTTGGGTTTGTGTCACAACAACGATCGCGACCAGATCTACG
TGTGGATTACAAGGCGGGAGGGCGGTGGAAAGTGAGCCCACACCTGCGGATACGAGGATTGCTGT
GGCAGCCAGGGTGTATAAGGCACAAAAAATAGAAGGGTGGGGACGCCAAGTGCACGCGAAGGAGA
AAATAATGGGGAGGACAATGGGAAAGGGAACAGCTGACCAGGAGTGTTTTGAAACTGCTTGTTTG
ATGTGGGCTGTGGATGATGCCCAGCTTCGCTCAAACCAGGCAAAAACCCGGAGGGGTGGCCAGGC
AAAACACGGGTCGAGAACCCGGCGAAAACCCGATCGGTTGACCAAAGCGACCTAAACCCGACCAA
TAGAATAGCGCAAATCAACTAACTTAGACGCCTAATCCTACGACT
Right flanking sequence: Indices 48159 -- 48658
CCAATATCAACAGAAATAACCAATAACAACCAATAACAACCAATAACAACCAATAACAACCAATA
ACAACCAAAAAACTAAACCAATAAACCGAAAAATCCAAATAACAACCAATAAAACCAAATAACAA
GAATCCCCTAAAAACCACAGAATAACTACCTATTCTCTACATGAAACCACCTACTACTACCATCA
CATCTACAACCACTTAAATCCCATACCCACCTAGGCCCACCACCTAAGCCCACCACCACCTAACC
CACCAAACCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATACCCACCAC
GCGTCAATGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATGCATCGGAA
TGGAAGCCCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGGGATCCGCG
TACGGACCCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCC
Found at i:48159 original size:10 final size:10
Alignment explanation
Indices: 48141--48288 Score: 139
Period size: 10 Copynumber: 14.8 Consensus size: 10
48131 ACGACAAGGA
48141 AATAACAACC
1 AATAACAACC
*
48151 AACAACAACC
1 AATAACAACC
*
48161 AATATCAA-C
1 AATAACAACC
*
48170 AGA-AATAACC
1 A-ATAACAACC
48180 AATAACAACC
1 AATAACAACC
48190 AATAACAACC
1 AATAACAACC
48200 AATAACAACC
1 AATAACAACC
48210 AATAACAACC
1 AATAACAACC
48220 AATAACAACC
1 AATAACAACC
*
48230 AAAAAACTAAACC
1 -AATAAC--AACC
48243 AAT-A-AACC
1 AATAACAACC
*
48251 GAA-AA-ATCC
1 -AATAACAACC
48260 AAATAACAACC
1 -AATAACAACC
48271 AATAA-AACC
1 AATAACAACC
48280 AAATAACAA
1 -AATAACAA
48289 GAATCCCCTA
Statistics
Matches: 115, Mismatches: 11, Indels: 23
0.77 0.07 0.15
Matches are distributed among these distances:
8 4 0.03
9 18 0.16
10 76 0.66
11 11 0.10
12 2 0.02
13 4 0.03
ACGTcount: A:0.62, C:0.26, G:0.01, T:0.10
Consensus pattern (10 bp):
AATAACAACC
Left flanking sequence: Indices 47641 -- 48140
GGTGGTGACAAGCGATTGTCTAGGCGAAACGATCGTCGTTCCAGGACGATCGCTAAGGGATTTGG
GTTTGTGTCACAACAACGATCGCGACCAGATCTACGTGTGGATTACAAGGCGGGAGGGCGGTGGA
AAGTGAGCCCACACCTGCGGATACGAGGATTGCTGTGGCAGCCAGGGTGTATAAGGCACAAAAAA
TAGAAGGGTGGGGACGCCAAGTGCACGCGAAGGAGAAAATAATGGGGAGGACAATGGGAAAGGGA
ACAGCTGACCAGGAGTGTTTTGAAACTGCTTGTTTGATGTGGGCTGTGGATGATGCCCAGCTTCG
CTCAAACCAGGCAAAAACCCGGAGGGGTGGCCAGGCAAAACACGGGTCGAGAACCCGGCGAAAAC
CCGATCGGTTGACCAAAGCGACCTAAACCCGACCAATAGAATAGCGCAAATCAACTAACTTAGAC
GCCTAATCCTACGACTACAAGCAAACAACAAGCAAACGACAAGGA
Right flanking sequence: Indices 48289 -- 48788
GAATCCCCTAAAAACCACAGAATAACTACCTATTCTCTACATGAAACCACCTACTACTACCATCA
CATCTACAACCACTTAAATCCCATACCCACCTAGGCCCACCACCTAAGCCCACCACCACCTAACC
CACCAAACCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATACCCACCAC
GCGTCAATGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATGCATCGGAA
TGGAAGCCCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGGGATCCGCG
TACGGACCCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCCGTCTGCCTCACCCCACCAGA
TCTCCCGACACTCCCGTTACAGCAATTTGTGCCCGAAATTGTCACCGATGGCCATTGTTTTGCTG
TGGGCATTTTGTAAACAAACACCCTGCAGATGTCCCGCGTGCATC
Found at i:48398 original size:13 final size:13
Alignment explanation
Indices: 48380--48410 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
48370 AATCCCATAC
*
48380 CCACCTAGGCCCA
1 CCACCTAAGCCCA
48393 CCACCTAAGCCCA
1 CCACCTAAGCCCA
48406 CCACC
1 CCACC
48411 ACCTAACCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.58, G:0.10, T:0.06
Consensus pattern (13 bp):
CCACCTAAGCCCA
Left flanking sequence: Indices 47880 -- 48379
GGGAGGACAATGGGAAAGGGAACAGCTGACCAGGAGTGTTTTGAAACTGCTTGTTTGATGTGGGC
TGTGGATGATGCCCAGCTTCGCTCAAACCAGGCAAAAACCCGGAGGGGTGGCCAGGCAAAACACG
GGTCGAGAACCCGGCGAAAACCCGATCGGTTGACCAAAGCGACCTAAACCCGACCAATAGAATAG
CGCAAATCAACTAACTTAGACGCCTAATCCTACGACTACAAGCAAACAACAAGCAAACGACAAGG
AAATAACAACCAACAACAACCAATATCAACAGAAATAACCAATAACAACCAATAACAACCAATAA
CAACCAATAACAACCAATAACAACCAAAAAACTAAACCAATAAACCGAAAAATCCAAATAACAAC
CAATAAAACCAAATAACAAGAATCCCCTAAAAACCACAGAATAACTACCTATTCTCTACATGAAA
CCACCTACTACTACCATCACATCTACAACCACTTAAATCCCATAC
Right flanking sequence: Indices 48411 -- 48910
ACCTAACCCACCAAACCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATA
CCCACCACGCGTCAATGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATG
CATCGGAATGGAAGCCCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGG
GATCCGCGTACGGACCCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCCGTCTGCCTCACC
CCACCAGATCTCCCGACACTCCCGTTACAGCAATTTGTGCCCGAAATTGTCACCGATGGCCATTG
TTTTGCTGTGGGCATTTTGTAAACAAACACCCTGCAGATGTCCCGCGTGCATCGCCAGCGACATG
GAGTTCATGGGGTACGCGTCCGCAGGGCCAGGCCCCGCCCACCACCGCCGTAGACCCATCCCCCT
GTAGCCCGTTGACACCCGCCCGCGCCGTTGCACAATCCTGTCACC
Found at i:48409 original size:16 final size:15
Alignment explanation
Indices: 48390--48423 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
48380 CCACCTAGGC
48390 CCACCACCTAAGCCCA
1 CCACCACCTAA-CCCA
48406 CCACCACCTAACCCA
1 CCACCACCTAACCCA
48421 CCA
1 CCA
48424 AACCACCCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.32, C:0.59, G:0.03, T:0.06
Consensus pattern (15 bp):
CCACCACCTAACCCA
Left flanking sequence: Indices 47890 -- 48389
TGGGAAAGGGAACAGCTGACCAGGAGTGTTTTGAAACTGCTTGTTTGATGTGGGCTGTGGATGAT
GCCCAGCTTCGCTCAAACCAGGCAAAAACCCGGAGGGGTGGCCAGGCAAAACACGGGTCGAGAAC
CCGGCGAAAACCCGATCGGTTGACCAAAGCGACCTAAACCCGACCAATAGAATAGCGCAAATCAA
CTAACTTAGACGCCTAATCCTACGACTACAAGCAAACAACAAGCAAACGACAAGGAAATAACAAC
CAACAACAACCAATATCAACAGAAATAACCAATAACAACCAATAACAACCAATAACAACCAATAA
CAACCAATAACAACCAAAAAACTAAACCAATAAACCGAAAAATCCAAATAACAACCAATAAAACC
AAATAACAAGAATCCCCTAAAAACCACAGAATAACTACCTATTCTCTACATGAAACCACCTACTA
CTACCATCACATCTACAACCACTTAAATCCCATACCCACCTAGGC
Right flanking sequence: Indices 48424 -- 48923
AACCACCCCTACTCCCCTCGTAACCACCAACCCACCCCTCCACCCCGACATACCCACCACGCGTC
AATGCCATCGCAATAACCCTTCAACCTTATTTCCGGGCCGCAATCGTAGATGCATCGGAATGGAA
GCCCTGGTCGCGAATCACTACGCGACGCACCCACCCCCCGTCGCCCCTGGGGGATCCGCGTACGG
ACCCGCCCCTCCCAATCGGGCACATCCCCCGCCTGCTGCCGTCTGCCTCACCCCACCAGATCTCC
CGACACTCCCGTTACAGCAATTTGTGCCCGAAATTGTCACCGATGGCCATTGTTTTGCTGTGGGC
ATTTTGTAAACAAACACCCTGCAGATGTCCCGCGTGCATCGCCAGCGACATGGAGTTCATGGGGT
ACGCGTCCGCAGGGCCAGGCCCCGCCCACCACCGCCGTAGACCCATCCCCCTGTAGCCCGTTGAC
ACCCGCCCGCGCCGTTGCACAATCCTGTCACCATCCTTCGCAGCA
Found at i:50139 original size:12 final size:12
Alignment explanation
Indices: 50122--50149 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
50112 CGTCACGGTA
50122 CCGCGGGACTTG
1 CCGCGGGACTTG
50134 CCGCGGGACTTG
1 CCGCGGGACTTG
50146 CCGC
1 CCGC
50150 TGGCGACCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.39, G:0.39, T:0.14
Consensus pattern (12 bp):
CCGCGGGACTTG
Left flanking sequence: Indices 49622 -- 50121
GCGACAGCACCGACTTGGACGCGTTGGAGCGGTCCAAGCTGATTGCGCTGGTGTTCACCACGTTC
TCCACGGGCACGGGCAGCGCCACCCCCGTGCGGCTCGCGGCGGTGGCGGAAAGCGACGCCGAGGA
CGCTCCGCAGGCGGGGCGCGACGGGTTGTTGCCCGCGTGCGAGATCGAGCCCGAGAAGCTGCCGT
TGGCGGTGGACACGCGGGCCAGGACGGCGCTGGGGGTGGTGTTCGGGTCCGAGCTCGTTTCGCCG
GTGGAAAAACTGGTTTCTCCGGTGGACAACGGGCACTTTGCGAGCCCCCCGGAAAACAGCGAAAA
CGCCGGTGAAAAACTTGAAAATCTTGAAAAACCGAGCTCTCCGGGCTCTCCGGTGGACCCGGGCG
ACACCCACGACCCCGCGAGAGCACCGCTGACCGACCCCACCGACATCAGCATCACCAACCCGCAC
ATCGAGGCGTACCAGCCCGCACCGAAGCCGCAGATCGTCACGGTA
Right flanking sequence: Indices 50150 -- 50649
TGGCGACCCCGCTGACGGTGGAGGACGTGTACCGCGACGCGTACATGCTGTTGATGGACCACCAC
CAGGCGGTGGTGGACCGCCAGCGGCGCGACATCGCCCAGTTGCAGCGCCAGTTGCAGCACGAGCG
CGACCGCAACCGCGACTTGCTCAACATGGTGACGCTGAAGAAGCTGGCGGAGCTGCCGGCGCCGC
TCAAGCCGTTCCGCAACAAGTTCATTGTGCCGATGAAGATCGTCAACCTGCCGCAGGCACACGAC
GCGGTGGAGCTCGATCCCGTGGACGCCGACGTGCCCACGCTGACGCCGATGACGCTGTTTGCCCG
CGACGACGACAAGCGGCTGACGGCGTTCTATCTGTGCAAGCTGGTGCTTGACGACCTGGGGGTGT
TTGAGGAGATTCCGTTTGAGCCGTTTGTGGGCCACCGGCTCGACGCGCTGGTGGAGGAGGTGGGA
GCCCACGCCGGCTACGAGGTGGCGAAGGAGGTGGAGGTTCACGCA
Found at i:51292 original size:15 final size:15
Alignment explanation
Indices: 51254--51365 Score: 56
Period size: 15 Copynumber: 7.5 Consensus size: 15
51244 ATTGGGTAGA
*
51254 GATCGAGGTAGAGACT
1 GATC-AGGTAGAGATT
** * *
51270 GAGAAGGTTGAGGTT
1 GATCAGGTAGAGATT
51285 GATCAGGTAGAGATT
1 GATCAGGTAGAGATT
**
51300 GATTGGGTAGAAGATT
1 GATCAGGTAG-AGATT
51316 GATC-GAG-AGAGATT
1 GATCAG-GTAGAGATT
*
51330 G-TCTAGGGAGTAGA--
1 GATC-AGGTAG-AGATT
*
51344 GAT-TGGTAGAGATT
1 GATCAGGTAGAGATT
51358 GATCAGGT
1 GATCAGGT
51366 TGGCAAGATT
Statistics
Matches: 71, Mismatches: 15, Indels: 21
0.66 0.14 0.20
Matches are distributed among these distances:
12 3 0.04
13 6 0.08
14 11 0.15
15 37 0.52
16 14 0.20
ACGTcount: A:0.30, C:0.05, G:0.38, T:0.26
Consensus pattern (15 bp):
GATCAGGTAGAGATT
Left flanking sequence: Indices 50754 -- 51253
CTACCCGGACGAGATCGGAGCCCACGAGGTCGAGGTCGAGGCCCACGACTACCTGGACGAGGCGC
TGGCGCCCGGAAACCTGATGGCGCTGGCCCCCCACCTGCCGCAGGACGTCACCACCCCCACCATC
GTGCTGGTGCCCGAGTTTGCCAGCAACAACCCGTTCAAGGACATGCCGCTCGACGAGCTGCTGCC
CCAGGAGGCGCTGCCCGCGGCGCTGCTGGTGTATCTGCCGGTGAAGGAGGTGAGACGCTCGCGGT
TCCTCGACATCATGGAGGTGGCGCGTGCGTACGACGCCGAGGTCAACTCGGTGGACGACGACGTG
TTTGACTTTGAGCCCCCCGTGGAGCCGGTGTCGAGCATGACCACCCCGGGCGTGGCCCACCACGA
CAAGTTCTAATGCATTGCACGCGAGTGCTGGTTAATATAGAAGACACAGTCTAATTAATATCGAC
AATGAGAGAGAGAGATGGGTGGGGATGGAGTAGGGATTGGGTAGA
Right flanking sequence: Indices 51366 -- 51865
TGGCAAGATTGATCGAGAGCGATTGTAGAAATATCGGGTAGAGAGATTGATCGCGTAGAGAGATT
GTCTTGAAGAGATTGACCGAGATTCATCTTGAGACTAGATTGACGCTGTGCTGACGGGTATTGTT
CGTGAGCAAATAAGGTTGGTGGTCGTAAACGGAGATCACATGGGTGGGACAAGTGTCTGCGTCTG
TGTGGGGCTGCCTCGAAGGTCGCGCGCGCGGTGGGTTGATGGGGTTGGTGTGGGTTGGTATGTGG
GTGAGTATACGTGGTGTTTTCAGAGCTTTTGGCTACGTAGCATTAAGCAGTGGAACAGCGGTTGG
TGACCGCATGAGCCCAAATGGGAAGCGTGATCTGGACGCGGACAGCTGTACGAATCATGAGATGC
TGCGATAAGGGTTCAGACAGTCAGCGCGAGGAGTGGAGCAGCCCAAAGCGGCACAGAGGGTGCAT
TTAGGGTGGAGCAGGTCTAGGCCCGATTGGGAAATAATGCCCAAT
Found at i:51423 original size:17 final size:17
Alignment explanation
Indices: 51398--51431 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51388 TTGTAGAAAT
*
51398 ATCGGGTAGAGAGATTG
1 ATCGCGTAGAGAGATTG
51415 ATCGCGTAGAGAGATTG
1 ATCGCGTAGAGAGATTG
51432 TCTTGAAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.38, T:0.24
Consensus pattern (17 bp):
ATCGCGTAGAGAGATTG
Left flanking sequence: Indices 50898 -- 51397
GTTTGCCAGCAACAACCCGTTCAAGGACATGCCGCTCGACGAGCTGCTGCCCCAGGAGGCGCTGC
CCGCGGCGCTGCTGGTGTATCTGCCGGTGAAGGAGGTGAGACGCTCGCGGTTCCTCGACATCATG
GAGGTGGCGCGTGCGTACGACGCCGAGGTCAACTCGGTGGACGACGACGTGTTTGACTTTGAGCC
CCCCGTGGAGCCGGTGTCGAGCATGACCACCCCGGGCGTGGCCCACCACGACAAGTTCTAATGCA
TTGCACGCGAGTGCTGGTTAATATAGAAGACACAGTCTAATTAATATCGACAATGAGAGAGAGAG
ATGGGTGGGGATGGAGTAGGGATTGGGTAGAGATCGAGGTAGAGACTGAGAAGGTTGAGGTTGAT
CAGGTAGAGATTGATTGGGTAGAAGATTGATCGAGAGAGATTGTCTAGGGAGTAGAGATTGGTAG
AGATTGATCAGGTTGGCAAGATTGATCGAGAGCGATTGTAGAAAT
Right flanking sequence: Indices 51432 -- 51931
TCTTGAAGAGATTGACCGAGATTCATCTTGAGACTAGATTGACGCTGTGCTGACGGGTATTGTTC
GTGAGCAAATAAGGTTGGTGGTCGTAAACGGAGATCACATGGGTGGGACAAGTGTCTGCGTCTGT
GTGGGGCTGCCTCGAAGGTCGCGCGCGCGGTGGGTTGATGGGGTTGGTGTGGGTTGGTATGTGGG
TGAGTATACGTGGTGTTTTCAGAGCTTTTGGCTACGTAGCATTAAGCAGTGGAACAGCGGTTGGT
GACCGCATGAGCCCAAATGGGAAGCGTGATCTGGACGCGGACAGCTGTACGAATCATGAGATGCT
GCGATAAGGGTTCAGACAGTCAGCGCGAGGAGTGGAGCAGCCCAAAGCGGCACAGAGGGTGCATT
TAGGGTGGAGCAGGTCTAGGCCCGATTGGGAAATAATGCCCAATATCGAACCACAAGGGAGAGGT
GGTGAAAAGGGGTGGAATTTAGTCTCAAGAGGAAAAAAAAGGGGT
Found at i:52110 original size:21 final size:21
Alignment explanation
Indices: 52080--52183 Score: 73
Period size: 21 Copynumber: 4.7 Consensus size: 21
52070 AAAATGGTCA
*
52080 CCAAAGTGGTTGCAAATGCCT
1 CCAAAATGGTTGCAAATGCCT
** * * *
52101 CCAAAATGGTCACCAGATTGGTCA
1 CCAAAATGGT-TGCA-AAT-GCCT
* *
52125 CCAATATGGTTTCAAATATGCCT
1 CCAAAATGGTTGC-AA-ATGCCT
*
52148 CCAAAGTGGTTGCAAATGCCT
1 CCAAAATGGTTGCAAATGCCT
*
52169 CCAAAATGGCTGCAA
1 CCAAAATGGTTGCAA
52184 TACTTGCAAT
Statistics
Matches: 61, Mismatches: 17, Indels: 10
0.69 0.19 0.11
Matches are distributed among these distances:
21 28 0.46
22 4 0.07
23 16 0.26
24 13 0.21
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (21 bp):
CCAAAATGGTTGCAAATGCCT
Left flanking sequence: Indices 51580 -- 52079
TCGCGCGCGCGGTGGGTTGATGGGGTTGGTGTGGGTTGGTATGTGGGTGAGTATACGTGGTGTTT
TCAGAGCTTTTGGCTACGTAGCATTAAGCAGTGGAACAGCGGTTGGTGACCGCATGAGCCCAAAT
GGGAAGCGTGATCTGGACGCGGACAGCTGTACGAATCATGAGATGCTGCGATAAGGGTTCAGACA
GTCAGCGCGAGGAGTGGAGCAGCCCAAAGCGGCACAGAGGGTGCATTTAGGGTGGAGCAGGTCTA
GGCCCGATTGGGAAATAATGCCCAATATCGAACCACAAGGGAGAGGTGGTGAAAAGGGGTGGAAT
TTAGTCTCAAGAGGAAAAAAAAGGGGTTTTCCGTGTATTTCCTGTCTTTCGAAAAACCACAACCA
CTTTTTTAACCACCCCACGCCCCTGGGAGCGCTCTACGTTGGGACCATGTTTCCTTGAGTCTCGC
GTCCTGCATATAATTTGGCTGCAAAAATGGTTGCAAAAATGGTCA
Right flanking sequence: Indices 52184 -- 52683
TACTTGCAATGGTTACAAATGCTTGCAATGGTCACAGGTTATGCACCTTAATCCATTCCCTACGC
CATCCAACCCCTCTCCTCTCATCGTCTACTTTATTACTGTACATCACGCGGGCGAAAACTCCTTG
ATCTCGTTCTCGTCCGCCACAAGACCCATCACGTTCAAGAACATGTTCATGTTGTTCAACAAGTT
CAGCTTGCGGTACGCCTGCTGCGGGTCCAGCGCGTCCAACGCCTTGGCCCGCTTCATGGTGCCAA
AGATCTCGTCGCGCACCTCGTCGACAAGAATCCGCTGGTGGTTCAACTTGCCGCCGCAGCACAAC
GTGGCCAAAAACTGCCAGATGTAGTTCTCCAGCGTCAGCCCGTCGTCCACGTCCTCGGGATGCGG
CGGGAAGATCTGGGCAATCTTCAGCTCAAGCAGCGTGAACAACTCGTCGTAGCACAGCTGCCACA
GCAGGAGCTCCGTGGCCAGCAACCGCAGCTCGCCGATGATCAACA
Found at i:52112 original size:33 final size:33
Alignment explanation
Indices: 52070--52177 Score: 101
Period size: 33 Copynumber: 3.2 Consensus size: 33
52060 AATGGTTGCA
52070 AAAATGGTCACCAAAGTGGTTGCAAATGCCTCC
1 AAAATGGTCACCAAAGTGGTTGCAAATGCCTCC
* * ** ** *
52103 AAAATGGTCACCAGATTGGTCACCAATATGGTTTC
1 AAAATGGTCACCAAAGTGGT-TGCAA-ATGCCTCC
* *
52138 AAATAT-GCCTCCAAAGTGGTTGCAAATGCCTCC
1 AAA-ATGGTCACCAAAGTGGTTGCAAATGCCTCC
52171 AAAATGG
1 AAAATGG
52178 CTGCAATACT
Statistics
Matches: 55, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
32 2 0.04
33 27 0.49
34 6 0.11
35 18 0.33
36 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (33 bp):
AAAATGGTCACCAAAGTGGTTGCAAATGCCTCC
Left flanking sequence: Indices 51570 -- 52069
GCCTCGAAGGTCGCGCGCGCGGTGGGTTGATGGGGTTGGTGTGGGTTGGTATGTGGGTGAGTATA
CGTGGTGTTTTCAGAGCTTTTGGCTACGTAGCATTAAGCAGTGGAACAGCGGTTGGTGACCGCAT
GAGCCCAAATGGGAAGCGTGATCTGGACGCGGACAGCTGTACGAATCATGAGATGCTGCGATAAG
GGTTCAGACAGTCAGCGCGAGGAGTGGAGCAGCCCAAAGCGGCACAGAGGGTGCATTTAGGGTGG
AGCAGGTCTAGGCCCGATTGGGAAATAATGCCCAATATCGAACCACAAGGGAGAGGTGGTGAAAA
GGGGTGGAATTTAGTCTCAAGAGGAAAAAAAAGGGGTTTTCCGTGTATTTCCTGTCTTTCGAAAA
ACCACAACCACTTTTTTAACCACCCCACGCCCCTGGGAGCGCTCTACGTTGGGACCATGTTTCCT
TGAGTCTCGCGTCCTGCATATAATTTGGCTGCAAAAATGGTTGCA
Right flanking sequence: Indices 52178 -- 52677
CTGCAATACTTGCAATGGTTACAAATGCTTGCAATGGTCACAGGTTATGCACCTTAATCCATTCC
CTACGCCATCCAACCCCTCTCCTCTCATCGTCTACTTTATTACTGTACATCACGCGGGCGAAAAC
TCCTTGATCTCGTTCTCGTCCGCCACAAGACCCATCACGTTCAAGAACATGTTCATGTTGTTCAA
CAAGTTCAGCTTGCGGTACGCCTGCTGCGGGTCCAGCGCGTCCAACGCCTTGGCCCGCTTCATGG
TGCCAAAGATCTCGTCGCGCACCTCGTCGACAAGAATCCGCTGGTGGTTCAACTTGCCGCCGCAG
CACAACGTGGCCAAAAACTGCCAGATGTAGTTCTCCAGCGTCAGCCCGTCGTCCACGTCCTCGGG
ATGCGGCGGGAAGATCTGGGCAATCTTCAGCTCAAGCAGCGTGAACAACTCGTCGTAGCACAGCT
GCCACAGCAGGAGCTCCGTGGCCAGCAACCGCAGCTCGCCGATGA
Found at i:54004 original size:30 final size:30
Alignment explanation
Indices: 53969--54063 Score: 136
Period size: 30 Copynumber: 3.2 Consensus size: 30
53959 GGCCGTGGGG
* *
53969 CTGGACGGGTTGGCCCTGGAGAGGTTGGCC
1 CTGGACGGGTTGGCCCTGGATAGGCTGGCC
*
53999 CTGGACGGGTTGGCCTTGGATAGGCTGGCC
1 CTGGACGGGTTGGCCCTGGATAGGCTGGCC
* * *
54029 CTGAACGGGTTGACCCTGGCTAGGCTGGCC
1 CTGGACGGGTTGGCCCTGGATAGGCTGGCC
54059 CTGGA
1 CTGGA
54064 TCTGCTGGCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.12, C:0.25, G:0.42, T:0.21
Consensus pattern (30 bp):
CTGGACGGGTTGGCCCTGGATAGGCTGGCC
Left flanking sequence: Indices 53469 -- 53968
TCCTTGGCCACGGTGACCGCCTTCTGGACCTGCTGCTGCATCCGCTGGAGCGCCACGTCCGCGCG
CTTGTGGCGGCCGCCAAGACGGTGGCCCAGCTGCTCGAGGTACGCCTGGGCAATCAGGTTGTGCT
CGTTCAGCTGGGTGGCGCCGTACGCGTTCTGCTTCGGGTGGATCACCTTGAACACCTGCGCGTAG
AAGTCCTCGTTGTAGGGGTCCTCGGTGACGATCTGCGACAACTGGAACCGGGTGACAAAGTCCTT
GTCCTTGGGGTTCATGATGCCCAGGTACTTCATGATGCGCGCCACCTTCTCCTGGCGCTTGTGGA
GCTTCTCCTGCTGCTCGGGGGTCAACTCGTCGAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCG
TGGCGCGCGGGCAGCGGCAGCGAGCCCTTGGCGGGCTTCAGACCAAGCACGGGGAACTGCGAGAG
GTCCGCCGGGGGGTGGAACTGCCCGGGAAGGGGCTGGCCGTGGGG
Right flanking sequence: Indices 54064 -- 54563
TCTGCTGGCCCTGAATGGGTTGGCCGGGCTGGCCCTGAGGCTGACCAGGCTGGCCTTGAATGGGC
TGACCGGGCTGGCCATGAACGGGCTGACCAGGTTGACCAGGTTGACCAGGCTGACCAGGCTGACC
AGGCTGACCCTGCGGCTGGCCTGGTTGAACCTGACCGGGCTGGCCAGGCTGTCCGGGCTGACCCT
GAGGCTGACCCTGACCGGGCTGACCAGGTCCCATAAACTGGCCCATGGGCATGAACGGGGGCATC
CCGGGCCCACCCGGACCACCGGGACCACCGGGCCCACCAGGCCCACCAGGAGCACCCATCCACTG
CTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAAACCCCTGCGGAGGCACCATGTACCCCA
TGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCC
TGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATG
Found at i:54087 original size:15 final size:15
Alignment explanation
Indices: 53969--54088 Score: 89
Period size: 15 Copynumber: 8.0 Consensus size: 15
53959 GGCCGTGGGG
*
53969 CTGGACGGGTTGGCC
1 CTGGATGGGTTGGCC
53984 CTGGA-GAGGTTGGCC
1 CTGGATG-GGTTGGCC
*
53999 CTGGACGGGTTGGCC
1 CTGGATGGGTTGGCC
* * *
54014 TTGGATAGGCTGGCC
1 CTGGATGGGTTGGCC
* * *
54029 CTGAACGGGTTGACC
1 CTGGATGGGTTGGCC
* * *
54044 CTGGCTAGGCTGGCC
1 CTGGATGGGTTGGCC
** *
54059 CTGGATCTGCTGGCC
1 CTGGATGGGTTGGCC
*
54074 CTGAATGGGTTGGCC
1 CTGGATGGGTTGGCC
54089 GGGCTGGCCC
Statistics
Matches: 80, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
14 1 0.01
15 78 0.98
16 1 0.01
ACGTcount: A:0.11, C:0.26, G:0.41, T:0.23
Consensus pattern (15 bp):
CTGGATGGGTTGGCC
Left flanking sequence: Indices 53469 -- 53968
TCCTTGGCCACGGTGACCGCCTTCTGGACCTGCTGCTGCATCCGCTGGAGCGCCACGTCCGCGCG
CTTGTGGCGGCCGCCAAGACGGTGGCCCAGCTGCTCGAGGTACGCCTGGGCAATCAGGTTGTGCT
CGTTCAGCTGGGTGGCGCCGTACGCGTTCTGCTTCGGGTGGATCACCTTGAACACCTGCGCGTAG
AAGTCCTCGTTGTAGGGGTCCTCGGTGACGATCTGCGACAACTGGAACCGGGTGACAAAGTCCTT
GTCCTTGGGGTTCATGATGCCCAGGTACTTCATGATGCGCGCCACCTTCTCCTGGCGCTTGTGGA
GCTTCTCCTGCTGCTCGGGGGTCAACTCGTCGAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCG
TGGCGCGCGGGCAGCGGCAGCGAGCCCTTGGCGGGCTTCAGACCAAGCACGGGGAACTGCGAGAG
GTCCGCCGGGGGGTGGAACTGCCCGGGAAGGGGCTGGCCGTGGGG
Right flanking sequence: Indices 54089 -- 54588
GGGCTGGCCCTGAGGCTGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCATGAACGGGCT
GACCAGGTTGACCAGGTTGACCAGGCTGACCAGGCTGACCAGGCTGACCCTGCGGCTGGCCTGGT
TGAACCTGACCGGGCTGGCCAGGCTGTCCGGGCTGACCCTGAGGCTGACCCTGACCGGGCTGACC
AGGTCCCATAAACTGGCCCATGGGCATGAACGGGGGCATCCCGGGCCCACCCGGACCACCGGGAC
CACCGGGCCCACCAGGCCCACCAGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCG
TACCCAGGCATAAACCCCTGCGGAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGG
GTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCT
CGATCTCCTCCAACAGCATGATCTTGCGGTCGCCACCCTCGGGCT
Found at i:54094 original size:24 final size:24
Alignment explanation
Indices: 54067--54157 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
54057 CCCTGGATCT
* *
54067 GCTGGCCCTGAATGGGTTGGCCGG
1 GCTGGCCCTGAATGGGCTGACCGG
*
54091 GCTGGCCCTG-A--GGCTGACCAG
1 GCTGGCCCTGAATGGGCTGACCGG
*
54112 GCTGGCCTTGAATGGGCTGACCGG
1 GCTGGCCCTGAATGGGCTGACCGG
* *
54136 GCTGGCCATGAACGGGCTGACC
1 GCTGGCCCTGAATGGGCTGACC
54158 AGGTTGACCA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
21 16 0.28
22 1 0.02
23 1 0.02
24 39 0.68
ACGTcount: A:0.13, C:0.29, G:0.41, T:0.18
Consensus pattern (24 bp):
GCTGGCCCTGAATGGGCTGACCGG
Left flanking sequence: Indices 53567 -- 54066
CTCGAGGTACGCCTGGGCAATCAGGTTGTGCTCGTTCAGCTGGGTGGCGCCGTACGCGTTCTGCT
TCGGGTGGATCACCTTGAACACCTGCGCGTAGAAGTCCTCGTTGTAGGGGTCCTCGGTGACGATC
TGCGACAACTGGAACCGGGTGACAAAGTCCTTGTCCTTGGGGTTCATGATGCCCAGGTACTTCAT
GATGCGCGCCACCTTCTCCTGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGGTCAACTCGTCGA
AGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTGGCG
GGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAGGGG
CTGGCCGTGGGGCTGGACGGGTTGGCCCTGGAGAGGTTGGCCCTGGACGGGTTGGCCTTGGATAG
GCTGGCCCTGAACGGGTTGACCCTGGCTAGGCTGGCCCTGGATCT
Right flanking sequence: Indices 54158 -- 54657
AGGTTGACCAGGTTGACCAGGCTGACCAGGCTGACCAGGCTGACCCTGCGGCTGGCCTGGTTGAA
CCTGACCGGGCTGGCCAGGCTGTCCGGGCTGACCCTGAGGCTGACCCTGACCGGGCTGACCAGGT
CCCATAAACTGGCCCATGGGCATGAACGGGGGCATCCCGGGCCCACCCGGACCACCGGGACCACC
GGGCCCACCAGGCCCACCAGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACC
CAGGCATAAACCCCTGCGGAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGC
GGTTGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGAT
CTCCTCCAACAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGG
CGTTGGACGAGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGA
Found at i:54116 original size:45 final size:47
Alignment explanation
Indices: 54067--54160 Score: 129
Period size: 45 Copynumber: 2.0 Consensus size: 47
54057 CCCTGGATCT
* * *
54067 GCTGGCCCTGAATGGGTTGGCCGGGCTGGCCCTG-A-GGCTGACCAG
1 GCTGGCCCTGAATGGGCTGACCGGGCTGGCCATGAACGGCTGACCAG
*
54112 GCTGGCCTTGAATGGGCTGACCGGGCTGGCCATGAACGGGCTGACCAG
1 GCTGGCCCTGAATGGGCTGACCGGGCTGGCCATGAAC-GGCTGACCAG
54160 G
1 G
54161 TTGACCAGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
45 30 0.71
46 1 0.02
48 11 0.26
ACGTcount: A:0.14, C:0.28, G:0.41, T:0.17
Consensus pattern (47 bp):
GCTGGCCCTGAATGGGCTGACCGGGCTGGCCATGAACGGCTGACCAG
Left flanking sequence: Indices 53567 -- 54066
CTCGAGGTACGCCTGGGCAATCAGGTTGTGCTCGTTCAGCTGGGTGGCGCCGTACGCGTTCTGCT
TCGGGTGGATCACCTTGAACACCTGCGCGTAGAAGTCCTCGTTGTAGGGGTCCTCGGTGACGATC
TGCGACAACTGGAACCGGGTGACAAAGTCCTTGTCCTTGGGGTTCATGATGCCCAGGTACTTCAT
GATGCGCGCCACCTTCTCCTGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGGTCAACTCGTCGA
AGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTGGCG
GGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAGGGG
CTGGCCGTGGGGCTGGACGGGTTGGCCCTGGAGAGGTTGGCCCTGGACGGGTTGGCCTTGGATAG
GCTGGCCCTGAACGGGTTGACCCTGGCTAGGCTGGCCCTGGATCT
Right flanking sequence: Indices 54161 -- 54660
TTGACCAGGTTGACCAGGCTGACCAGGCTGACCAGGCTGACCCTGCGGCTGGCCTGGTTGAACCT
GACCGGGCTGGCCAGGCTGTCCGGGCTGACCCTGAGGCTGACCCTGACCGGGCTGACCAGGTCCC
ATAAACTGGCCCATGGGCATGAACGGGGGCATCCCGGGCCCACCCGGACCACCGGGACCACCGGG
CCCACCAGGCCCACCAGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAG
GCATAAACCCCTGCGGAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGT
TGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTC
CTCCAACAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGT
TGGACGAGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGATGG
Found at i:54167 original size:9 final size:9
Alignment explanation
Indices: 54150--54202 Score: 88
Period size: 9 Copynumber: 5.9 Consensus size: 9
54140 GCCATGAACG
54150 GGCTGACCA
1 GGCTGACCA
*
54159 GGTTGACCA
1 GGCTGACCA
*
54168 GGTTGACCA
1 GGCTGACCA
54177 GGCTGACCA
1 GGCTGACCA
54186 GGCTGACCA
1 GGCTGACCA
54195 GGCTGACC
1 GGCTGACC
54203 CTGCGGCTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.21, C:0.30, G:0.34, T:0.15
Consensus pattern (9 bp):
GGCTGACCA
Left flanking sequence: Indices 53650 -- 54149
ACACCTGCGCGTAGAAGTCCTCGTTGTAGGGGTCCTCGGTGACGATCTGCGACAACTGGAACCGG
GTGACAAAGTCCTTGTCCTTGGGGTTCATGATGCCCAGGTACTTCATGATGCGCGCCACCTTCTC
CTGGCGCTTGTGGAGCTTCTCCTGCTGCTCGGGGGTCAACTCGTCGAAGTTGACCCGGTCGTGCG
ACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTGGCGGGCTTCAGACCAAGCACG
GGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAGGGGCTGGCCGTGGGGCTGGAC
GGGTTGGCCCTGGAGAGGTTGGCCCTGGACGGGTTGGCCTTGGATAGGCTGGCCCTGAACGGGTT
GACCCTGGCTAGGCTGGCCCTGGATCTGCTGGCCCTGAATGGGTTGGCCGGGCTGGCCCTGAGGC
TGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCATGAACG
Right flanking sequence: Indices 54203 -- 54702
CTGCGGCTGGCCTGGTTGAACCTGACCGGGCTGGCCAGGCTGTCCGGGCTGACCCTGAGGCTGAC
CCTGACCGGGCTGACCAGGTCCCATAAACTGGCCCATGGGCATGAACGGGGGCATCCCGGGCCCA
CCCGGACCACCGGGACCACCGGGCCCACCAGGCCCACCAGGAGCACCCATCCACTGCTGCGGCAT
CCCGGGAAACTGCCCGTACCCAGGCATAAACCCCTGCGGAGGCACCATGTACCCCATGGGCGGCA
CCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATC
GCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGG
GGACTTGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGA
TGGGCACCGCGGCCGCCAGCGCATACGACACCTGCTGGGGCGGCT
Found at i:54360 original size:18 final size:18
Alignment explanation
Indices: 54324--54370 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
54314 CGGGGGCATC
54324 CCGGGCCCACCCGGACCA
1 CCGGGCCCACCCGGACCA
* * *
54342 CCGGGACCACCGGGCCCA
1 CCGGGCCCACCCGGACCA
*
54360 CCAGGCCCACC
1 CCGGGCCCACC
54371 AGGAGCACCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.17, C:0.55, G:0.28, T:0.00
Consensus pattern (18 bp):
CCGGGCCCACCCGGACCA
Left flanking sequence: Indices 53824 -- 54323
CGAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTG
GCGGGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAG
GGGCTGGCCGTGGGGCTGGACGGGTTGGCCCTGGAGAGGTTGGCCCTGGACGGGTTGGCCTTGGA
TAGGCTGGCCCTGAACGGGTTGACCCTGGCTAGGCTGGCCCTGGATCTGCTGGCCCTGAATGGGT
TGGCCGGGCTGGCCCTGAGGCTGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCATGAAC
GGGCTGACCAGGTTGACCAGGTTGACCAGGCTGACCAGGCTGACCAGGCTGACCCTGCGGCTGGC
CTGGTTGAACCTGACCGGGCTGGCCAGGCTGTCCGGGCTGACCCTGAGGCTGACCCTGACCGGGC
TGACCAGGTCCCATAAACTGGCCCATGGGCATGAACGGGGGCATC
Right flanking sequence: Indices 54371 -- 54870
AGGAGCACCCATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAAACCCCTGCG
GAGGCACCATGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGC
GGCTGCGGAGGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATGAT
CTTGCGGTCGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGACGAGCCCCAGA
GATCCTCCATGAACTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCGCATACGACACCTGCTGG
GGCGGCTGCTGCGGGGCCTGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGTCGAGCTGGTCGGT
GCCCACGCCAAAGGTTTCGTCATTGAACTCGTCGTCGGCCTCCTTGAGGGTGTCGCCGAGCCCGT
CGTACGTCTCCTGGAAGTCGAGTGCTTCTTGTTTGGGCGCGCCGG
Found at i:54360 original size:27 final size:27
Alignment explanation
Indices: 54324--54379 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
54314 CGGGGGCATC
* *
54324 CCGGGCCCACCCGGACCACCGGGACCA
1 CCGGGCCCACCAGGACCACCAGGACCA
* *
54351 CCGGGCCCACCAGGCCCACCAGGAGCA
1 CCGGGCCCACCAGGACCACCAGGACCA
54378 CC
1 CC
54380 CATCCACTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.20, C:0.52, G:0.29, T:0.00
Consensus pattern (27 bp):
CCGGGCCCACCAGGACCACCAGGACCA
Left flanking sequence: Indices 53824 -- 54323
CGAAGTTGACCCGGTCGTGCGACGGGTGGTGCCCGTGGCGCGCGGGCAGCGGCAGCGAGCCCTTG
GCGGGCTTCAGACCAAGCACGGGGAACTGCGAGAGGTCCGCCGGGGGGTGGAACTGCCCGGGAAG
GGGCTGGCCGTGGGGCTGGACGGGTTGGCCCTGGAGAGGTTGGCCCTGGACGGGTTGGCCTTGGA
TAGGCTGGCCCTGAACGGGTTGACCCTGGCTAGGCTGGCCCTGGATCTGCTGGCCCTGAATGGGT
TGGCCGGGCTGGCCCTGAGGCTGACCAGGCTGGCCTTGAATGGGCTGACCGGGCTGGCCATGAAC
GGGCTGACCAGGTTGACCAGGTTGACCAGGCTGACCAGGCTGACCAGGCTGACCCTGCGGCTGGC
CTGGTTGAACCTGACCGGGCTGGCCAGGCTGTCCGGGCTGACCCTGAGGCTGACCCTGACCGGGC
TGACCAGGTCCCATAAACTGGCCCATGGGCATGAACGGGGGCATC
Right flanking sequence: Indices 54380 -- 54879
CATCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAAACCCCTGCGGAGGCACCA
TGTACCCCATGGGCGGCACCATGAACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGA
GGCACCCCCTGGTCGATCGCCGTCAACTGGGCCTCGATCTCCTCCAACAGCATGATCTTGCGGTC
GCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGATCCTCCA
TGAACTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCGCATACGACACCTGCTGGGGCGGCTGC
TGCGGGGCCTGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGTCGAGCTGGTCGGTGCCCACGCC
AAAGGTTTCGTCATTGAACTCGTCGTCGGCCTCCTTGAGGGTGTCGCCGAGCCCGTCGTACGTCT
CCTGGAAGTCGAGTGCTTCTTGTTTGGGCGCGCCGGAGGCGTCAA
Found at i:54452 original size:21 final size:21
Alignment explanation
Indices: 54427--54467 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
54417 CCAGGCATAA
54427 ACCCC-TGCGGAGGCACCATGT
1 ACCCCATG-GGAGGCACCATGT
*
54448 ACCCCATGGGCGGCACCATG
1 ACCCCATGGGAGGCACCATG
54468 AACTGGCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.20, C:0.39, G:0.29, T:0.12
Consensus pattern (21 bp):
ACCCCATGGGAGGCACCATGT
Left flanking sequence: Indices 53927 -- 54426
CGCCGGGGGGTGGAACTGCCCGGGAAGGGGCTGGCCGTGGGGCTGGACGGGTTGGCCCTGGAGAG
GTTGGCCCTGGACGGGTTGGCCTTGGATAGGCTGGCCCTGAACGGGTTGACCCTGGCTAGGCTGG
CCCTGGATCTGCTGGCCCTGAATGGGTTGGCCGGGCTGGCCCTGAGGCTGACCAGGCTGGCCTTG
AATGGGCTGACCGGGCTGGCCATGAACGGGCTGACCAGGTTGACCAGGTTGACCAGGCTGACCAG
GCTGACCAGGCTGACCCTGCGGCTGGCCTGGTTGAACCTGACCGGGCTGGCCAGGCTGTCCGGGC
TGACCCTGAGGCTGACCCTGACCGGGCTGACCAGGTCCCATAAACTGGCCCATGGGCATGAACGG
GGGCATCCCGGGCCCACCCGGACCACCGGGACCACCGGGCCCACCAGGCCCACCAGGAGCACCCA
TCCACTGCTGCGGCATCCCGGGAAACTGCCCGTACCCAGGCATAA
Right flanking sequence: Indices 54468 -- 54967
AACTGGCCGGGGTGCGGTTGCTGGCCAGGCTGCGGCTGCGGAGGCACCCCCTGGTCGATCGCCGT
CAACTGGGCCTCGATCTCCTCCAACAGCATGATCTTGCGGTCGCCACCCTCGGGCTGGGGGGACT
TGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGATCCTCCATGAACTGGTCGTCGTTGATGGGC
ACCGCGGCCGCCAGCGCATACGACACCTGCTGGGGCGGCTGCTGCGGGGCCTGTTGCGGCTGGCT
CAGGAACTGGAAGTTCCGGTCGAGCTGGTCGGTGCCCACGCCAAAGGTTTCGTCATTGAACTCGT
CGTCGGCCTCCTTGAGGGTGTCGCCGAGCCCGTCGTACGTCTCCTGGAAGTCGAGTGCTTCTTGT
TTGGGCGCGCCGGAGGCGTCAAACCCAAAGAACGACATGTTTGGTGGTTGCCGTTGGTAAAAAAG
ATTTTTATCGTCGACGCAGTGTGTGCAGGAGTGGTGGGGTGGTGG
Found at i:55097 original size:15 final size:15
Alignment explanation
Indices: 55074--55110 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
55064 GGTTGATTGG
* *
55074 GTTGGTTGTGGTTGC
1 GTTGTTTGTGGTTAC
55089 GTTGTTTGTGGTTAC
1 GTTGTTTGTGGTTAC
55104 GTTGTTT
1 GTTGTTT
55111 CACTGTGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.03, C:0.05, G:0.38, T:0.54
Consensus pattern (15 bp):
GTTGTTTGTGGTTAC
Left flanking sequence: Indices 54574 -- 55073
CGCCACCCTCGGGCTGGGGGGACTTGTTTTTGACGGGGGCGTTGGACGAGCCCCAGAGATCCTCC
ATGAACTGGTCGTCGTTGATGGGCACCGCGGCCGCCAGCGCATACGACACCTGCTGGGGCGGCTG
CTGCGGGGCCTGTTGCGGCTGGCTCAGGAACTGGAAGTTCCGGTCGAGCTGGTCGGTGCCCACGC
CAAAGGTTTCGTCATTGAACTCGTCGTCGGCCTCCTTGAGGGTGTCGCCGAGCCCGTCGTACGTC
TCCTGGAAGTCGAGTGCTTCTTGTTTGGGCGCGCCGGAGGCGTCAAACCCAAAGAACGACATGTT
TGGTGGTTGCCGTTGGTAAAAAAGATTTTTATCGTCGACGCAGTGTGTGCAGGAGTGGTGGGGTG
GTGGTGGTGGAGGGGGTGGAAGGTGAAAGGTGGGAAGGGTACGGCAATTGAGGAGTGGGAGATGG
ATGAAGGAGAGGGTTGATGGTGGGTTGGTTTGGTTGGTTGATTGG
Right flanking sequence: Indices 55111 -- 55610
CACTGTGGTTGGCTAGGTGGTTTGTTGTCTGTGCGGCTGCAACGGATCATAACAGAAGACGTGGA
GGTGGGGTTAATGTGGGGTGGTGGGGAGTGGGGAGTGGGGAATTGGGAATTGCGGTTATTTTAGG
TTAGTGTTACGGAGAGTGTTGGGTCGGAGGGGTGAGTTTGAGTGGTGTATAATATATGCCTGTTT
CGGAGTCTGCAGCCAAGCAGTGCCAAGGTATAGCGTTTGGTTACAGCACACTGATGTAGGAAATG
GTACTAGATGATGGGTTTTGCTTATAAGAACTTGTAACCTGTTCAATTGATGCTTGCTTACGTTA
GTCGTTCCGATCTCAAGCTAATTGTTCCTGGTGGACTCCATGGTGGAGAACACCTTATCTTGCGA
ACAGACTGGCTTTACTTCGTGTCGTCGGGCAATTCGATCACGTTCGCCGAATTGTTGCTAATGGG
GGATCAAACCTGTTCAATTGATCCTTGCCTTGTGAATTTTTCCAG
Found at i:55938 original size:24 final size:24
Alignment explanation
Indices: 55886--55947 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
55876 ATACTATTAC
*
55886 ACCAGATTGTTAACTCGGGACTGA
1 ACCAGATCGTTAACTCGGGACTGA
* * *
55910 ACCAGGTCGTTAACTTGGGACTGT
1 ACCAGATCGTTAACTCGGGACTGA
* *
55934 TCCAGATCGCTAAC
1 ACCAGATCGTTAAC
55948 CCGAGGCTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (24 bp):
ACCAGATCGTTAACTCGGGACTGA
Left flanking sequence: Indices 55386 -- 55885
TTTTGCTTATAAGAACTTGTAACCTGTTCAATTGATGCTTGCTTACGTTAGTCGTTCCGATCTCA
AGCTAATTGTTCCTGGTGGACTCCATGGTGGAGAACACCTTATCTTGCGAACAGACTGGCTTTAC
TTCGTGTCGTCGGGCAATTCGATCACGTTCGCCGAATTGTTGCTAATGGGGGATCAAACCTGTTC
AATTGATCCTTGCCTTGTGAATTTTTCCAGGTTCTGGCGTTGGACCGTAGCAATGGTGTAGTAGA
GATGATCGTTTCTGATCTCAAGCTGATTGTTCCGGTAGAATCCACGGTGGAGACCACTTCGTTTT
ACGAACAAACTGGCTGTAATTTGTATCGTTGGGCAATTACTCAGCGATTCGTTCGACGAATTGTT
CCAATCGCTACATTATCAGCAAACTACGTGGTCGTATAATCGAGACGAACCAACAAAACCGGACT
ACCTCCGCCCCTCCACAAGGACGACCAGCCATACAATACTATTAC
Right flanking sequence: Indices 55948 -- 56447
CCGAGGCTAATTTCCACAAGCCTCCCTACCTTCTATCGTCTATACGTTTACTCATCCCTCCCGCT
ACTCTATCTAAACGCGCTCGTAGCACAACACGTAGGCGTCCCGCGACGGGTGGGTGCGGTTGGGC
GTCTGCTGGCCCAACGGCACGTTCTCGTGCACCACACTGTCGTCGAAATTGCACCAGAACGGGTG
GTCAATGTTGTCCCGGTTGGTGGCCGTCTCCTGGTGGTAGGTCAGCTTGTTCACCGTGGCGGTGT
AGTGGCCCGACTTGAGATTGCCGTAGTGGTTGATGATCCCCGAGAGTTTGTAGGTGATTGTTGGC
GAAACGCTCAACAACGTGGGGATCTCAATCATCGTGTCGAGCTTGTCCGTCATCAGAAACATCAG
GAACCGGCTAAAGTGCATGAAAAGCACCTTGGGGTACTTGACCACGGTGATCTTCTTGGTGGACG
TCGCCGCCTTTGCTGCCTTGGCCAGTTTCTTGGTCTCCTTGGACG
Found at i:57510 original size:15 final size:15
Alignment explanation
Indices: 57490--57579 Score: 135
Period size: 15 Copynumber: 6.0 Consensus size: 15
57480 ACGTCTGTCG
57490 TGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
57505 TGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
*
57520 GGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
*
57535 CGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
57550 TGGTTGCGGGCGGTC
1 TGGTTGCGGGCGGTC
* * *
57565 AGGTGGAGGGCGGTC
1 TGGTTGCGGGCGGTC
57580 CCACGGCTGT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 69 1.00
ACGTcount: A:0.02, C:0.20, G:0.56, T:0.22
Consensus pattern (15 bp):
TGGTTGCGGGCGGTC
Left flanking sequence: Indices 56990 -- 57489
AACTTGGTGGGCGAGATCACCTGGCCCGCGTAGTTGGAGAACGTCTGGAGCAACGACGCGGTGGC
GTCGGAGAGCAAGAGCACGTCGCGCTTAACGTTGCGGTTGGCGAGCTCCTGCTGGAACTGCGGTC
GCCGGATGTAGTTGTGGTGGTCCTGGGCGAAAATGCGCTTGAAGTCGCCGATGCCAAAGAGCAAC
TGGATCGTCAGGTTGATGTAGCACGACACCCCGAGGTTGCGGAGGCCGCAGATGCGGTACGCCAC
CAGCGGCGGCGGCACGGGCTGGCCCTGGTACGTGGGCATGCGGTTGGTGCTCGACGGGCCGTACG
ACGCTAGCGCGGGCGGCGCGGGCGGGCCAGACACGGGCCCAGCGGCGTAGGGGCCGCCGAACGCG
GGCTGGCCGTGCGGTGTAGGCACCGGAGCGCGGTTGTACGCCTTGGGAGGCAGCGGGTAGTACGG
TTGCGGGGTTGACTGCACCTGGGGCGGGGCCGAGTACGTCTGTCG
Right flanking sequence: Indices 57580 -- 58079
CCACGGCTGTTTCAGCGGGCTCAGATACGGCTGGTACTGGCGGTTCTGGGGACTCTGGTGGGGTG
GGGTCAGGTCTACGCTGTAGCTGTGACCGTCGTGGCCAGCCTTGTTGCCGTTCGCGGCCAAGTTC
CGCAGCGGACTGCTGTGCTTCAACCCGTTGGAAAGAGCGCGGGCCGGGTGGTAGCCCCGTGGTCG
CGTGGGATCCCGCTGGGGCGGCTGGATGTAGTCGTCGTCCAAGTGCTCGTGGTCCGGGTACGGCG
CCACCACCGAGATCTTCGGGTTCATGGGCGGCAACAGCGGCATCTCCACCGCAGCGCGCTTGGGC
CGTAGCGGCAGCGTCACCTCGTAGTCGCCGGCAAACGTCGTCACCTCGGGCACCGCGGGGAACCG
CTGCTCAAACAGCGCCACCGAGTCGTCCGACCCCTCAAACGAGAACGCATCCAGGCGGTCGTTTG
GGTCGGGCCGGCCCCTATTTATATTTTTTGGCCCGTAGCGGTCGG
Found at i:57544 original size:45 final size:45
Alignment explanation
Indices: 57491--57580 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
57481 CGTCTGTCGT
* * *
57491 GGTTGCGGGCGGTCTGGTTGCGGGCGGTCGGGTTGCGGGCGGTCC
1 GGTTGCGGGCGGTCTGGTTGCGGGCGGTCAGGTGGAGGGCGGTCC
57536 GGTTGCGGGCGGTCTGGTTGCGGGCGGTCAGGTGGAGGGCGGTCC
1 GGTTGCGGGCGGTCTGGTTGCGGGCGGTCAGGTGGAGGGCGGTCC
57581 CACGGCTGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.02, C:0.21, G:0.56, T:0.21
Consensus pattern (45 bp):
GGTTGCGGGCGGTCTGGTTGCGGGCGGTCAGGTGGAGGGCGGTCC
Left flanking sequence: Indices 56991 -- 57490
ACTTGGTGGGCGAGATCACCTGGCCCGCGTAGTTGGAGAACGTCTGGAGCAACGACGCGGTGGCG
TCGGAGAGCAAGAGCACGTCGCGCTTAACGTTGCGGTTGGCGAGCTCCTGCTGGAACTGCGGTCG
CCGGATGTAGTTGTGGTGGTCCTGGGCGAAAATGCGCTTGAAGTCGCCGATGCCAAAGAGCAACT
GGATCGTCAGGTTGATGTAGCACGACACCCCGAGGTTGCGGAGGCCGCAGATGCGGTACGCCACC
AGCGGCGGCGGCACGGGCTGGCCCTGGTACGTGGGCATGCGGTTGGTGCTCGACGGGCCGTACGA
CGCTAGCGCGGGCGGCGCGGGCGGGCCAGACACGGGCCCAGCGGCGTAGGGGCCGCCGAACGCGG
GCTGGCCGTGCGGTGTAGGCACCGGAGCGCGGTTGTACGCCTTGGGAGGCAGCGGGTAGTACGGT
TGCGGGGTTGACTGCACCTGGGGCGGGGCCGAGTACGTCTGTCGT
Right flanking sequence: Indices 57581 -- 58080
CACGGCTGTTTCAGCGGGCTCAGATACGGCTGGTACTGGCGGTTCTGGGGACTCTGGTGGGGTGG
GGTCAGGTCTACGCTGTAGCTGTGACCGTCGTGGCCAGCCTTGTTGCCGTTCGCGGCCAAGTTCC
GCAGCGGACTGCTGTGCTTCAACCCGTTGGAAAGAGCGCGGGCCGGGTGGTAGCCCCGTGGTCGC
GTGGGATCCCGCTGGGGCGGCTGGATGTAGTCGTCGTCCAAGTGCTCGTGGTCCGGGTACGGCGC
CACCACCGAGATCTTCGGGTTCATGGGCGGCAACAGCGGCATCTCCACCGCAGCGCGCTTGGGCC
GTAGCGGCAGCGTCACCTCGTAGTCGCCGGCAAACGTCGTCACCTCGGGCACCGCGGGGAACCGC
TGCTCAAACAGCGCCACCGAGTCGTCCGACCCCTCAAACGAGAACGCATCCAGGCGGTCGTTTGG
GTCGGGCCGGCCCCTATTTATATTTTTTGGCCCGTAGCGGTCGGT
Found at i:59211 original size:8 final size:8
Alignment explanation
Indices: 59198--59258 Score: 113
Period size: 8 Copynumber: 7.6 Consensus size: 8
59188 CTGGTGGGAC
59198 GAGAGCGA
1 GAGAGCGA
59206 GAGAGCGA
1 GAGAGCGA
59214 GAGAGCGA
1 GAGAGCGA
59222 GAGAGCGA
1 GAGAGCGA
59230 GAGAGCGA
1 GAGAGCGA
*
59238 GAGAGAGA
1 GAGAGCGA
59246 GAGAGCGA
1 GAGAGCGA
59254 GAGAG
1 GAGAG
59259 AGAAGAGTGC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 51 1.00
ACGTcount: A:0.39, C:0.10, G:0.51, T:0.00
Consensus pattern (8 bp):
GAGAGCGA
Left flanking sequence: Indices 58698 -- 59197
CTTTTGTTGCGACCCGCGCGTGGAGATCGGAGGTGTACAGGGGTAGTGGCAGCTCCATCGAACAA
CGCGGACAGCGGACAAGCGGTGGCAGCGGGGGCGAGCGGGTGCCAGCAACGTAGTAGGTGCTGCG
ACGCCGCCCTGGTGCAGGGTCAACGTTCTCTGGGGGTTCCTTGGCAATCGGTCGCTTATGTAATT
AAACGAGGCGGAGGGGAGGCGAAGGTACGAGTTGAGAGGTTGCGGTCGTGACGAGCTGGCGCCGC
AGAGGGGCTGCTGGGGCCACCAGGGAGGGTACGTACCACCATAACGGGCGGGTTGCGCGGTCTTG
GCGGTCACGTTGGTGACGTCGAACGGCGAGAACCACCTCGCTACCGTAGGCTTCGAATGACCTTA
TGCGCGGAATAGCCACCGGGAATAAGGTGATATGTACGAGAACAGCGGGGACGGGCGGTTTCTTT
TCGTTAGGCGAAGTGACAGGACGGTAGAGGTATAGCTGGTGGGAC
Right flanking sequence: Indices 59259 -- 59758
AGAAGAGTGCGGATGGGAGAGAGGGAAGACTGTGTGGGACGACCATGAGTATTTCAGGTGTAATA
GTGTAGATCAACGTAGATCAATCGCTGGATGGCCTAGGCAATTCCGGTCGGGGAATTGGCGGCCC
GGTCGCGTGGTTACGTCACAGCCGGATTTAGACTTGGCAGCCACAGGGACATCATTTTAAGCTAT
ACGGCCAAGGGCTTAGTAGACCATTGCTCTTGTCTAGTTTGTGGCCCGCTGGTGAAAAATTTGAG
TACTTGGGCGGGTGGTGGCAGCTTCGAAGCCTCTAAGGCGATATTTTTAGGGTGGTCCATCAGCT
TATCCATGCTACCTGACGTATTTTGGTGTACCAAGTAACTGTGTTGCGTATTGGTATGTTACTTT
GAAGTTAGACAGCCAACCAGGTGACTATGGGCCACGCTCCCTTAGTCCCCGATCTACCCCCTTAC
AGCCGCTGGTAGGAGGAAGAATTTGCTATGTTCAAATTCGCTACC
Found at i:59259 original size:16 final size:16
Alignment explanation
Indices: 59198--59265 Score: 111
Period size: 16 Copynumber: 4.3 Consensus size: 16
59188 CTGGTGGGAC
*
59198 GAGAGCGAGAGAGCGA
1 GAGAGCGAGAGAGAGA
*
59214 GAGAGCGAGAGAGCGA
1 GAGAGCGAGAGAGAGA
59230 GAGAGCGAGAGAGAGA
1 GAGAGCGAGAGAGAGA
59246 GAGAGCGAGAGAGAGA
1 GAGAGCGAGAGAGAGA
59262 -AGAG
1 GAGAG
59266 TGCGGATGGG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
15 4 0.08
16 47 0.92
ACGTcount: A:0.41, C:0.09, G:0.50, T:0.00
Consensus pattern (16 bp):
GAGAGCGAGAGAGAGA
Left flanking sequence: Indices 58698 -- 59197
CTTTTGTTGCGACCCGCGCGTGGAGATCGGAGGTGTACAGGGGTAGTGGCAGCTCCATCGAACAA
CGCGGACAGCGGACAAGCGGTGGCAGCGGGGGCGAGCGGGTGCCAGCAACGTAGTAGGTGCTGCG
ACGCCGCCCTGGTGCAGGGTCAACGTTCTCTGGGGGTTCCTTGGCAATCGGTCGCTTATGTAATT
AAACGAGGCGGAGGGGAGGCGAAGGTACGAGTTGAGAGGTTGCGGTCGTGACGAGCTGGCGCCGC
AGAGGGGCTGCTGGGGCCACCAGGGAGGGTACGTACCACCATAACGGGCGGGTTGCGCGGTCTTG
GCGGTCACGTTGGTGACGTCGAACGGCGAGAACCACCTCGCTACCGTAGGCTTCGAATGACCTTA
TGCGCGGAATAGCCACCGGGAATAAGGTGATATGTACGAGAACAGCGGGGACGGGCGGTTTCTTT
TCGTTAGGCGAAGTGACAGGACGGTAGAGGTATAGCTGGTGGGAC
Right flanking sequence: Indices 59266 -- 59765
TGCGGATGGGAGAGAGGGAAGACTGTGTGGGACGACCATGAGTATTTCAGGTGTAATAGTGTAGA
TCAACGTAGATCAATCGCTGGATGGCCTAGGCAATTCCGGTCGGGGAATTGGCGGCCCGGTCGCG
TGGTTACGTCACAGCCGGATTTAGACTTGGCAGCCACAGGGACATCATTTTAAGCTATACGGCCA
AGGGCTTAGTAGACCATTGCTCTTGTCTAGTTTGTGGCCCGCTGGTGAAAAATTTGAGTACTTGG
GCGGGTGGTGGCAGCTTCGAAGCCTCTAAGGCGATATTTTTAGGGTGGTCCATCAGCTTATCCAT
GCTACCTGACGTATTTTGGTGTACCAAGTAACTGTGTTGCGTATTGGTATGTTACTTTGAAGTTA
GACAGCCAACCAGGTGACTATGGGCCACGCTCCCTTAGTCCCCGATCTACCCCCTTACAGCCGCT
GGTAGGAGGAAGAATTTGCTATGTTCAAATTCGCTACCCTCGCAC
Found at i:60066 original size:13 final size:13
Alignment explanation
Indices: 60048--60072 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60038 CTTTCCCCTC
60048 CTCTTTCTCCGTG
1 CTCTTTCTCCGTG
60061 CTCTTTCTCCGT
1 CTCTTTCTCCGT
60073 CTTCCACCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.12, T:0.48
Consensus pattern (13 bp):
CTCTTTCTCCGTG
Left flanking sequence: Indices 59548 -- 60047
CCTCTAAGGCGATATTTTTAGGGTGGTCCATCAGCTTATCCATGCTACCTGACGTATTTTGGTGT
ACCAAGTAACTGTGTTGCGTATTGGTATGTTACTTTGAAGTTAGACAGCCAACCAGGTGACTATG
GGCCACGCTCCCTTAGTCCCCGATCTACCCCCTTACAGCCGCTGGTAGGAGGAAGAATTTGCTAT
GTTCAAATTCGCTACCCTCGCACCATATTCGCTACCAAATCGGGCAAAGTATCTGATACACGGAG
TAACCCCTTAAACCACGCAAAACACCGCTTAAAGTGACCAGATCCCGACAATCCCTCCACAATCC
GAGGCATTTTCGGTCTCAACACCTCAAAACCCCTAATGAACCGTCTCGCTCCACAACCCACAGCC
GCTACAACACACTTTCAAACCCCGACAAATCCTCTCTCTTACCTCTATTACCCTTTACGGACCCA
TTTTATCAACACTCGCATCGCTCCCTCCTCCTCCTCTTTCCCCTC
Right flanking sequence: Indices 60073 -- 60572
CTTCCACCCACTTCATCACCGTTCCGATCGAACGCGACGCGTATGCAACGATGGCAGCGTGCCCG
CTATGTAACCAGGACGTCCCCGACGACGACCTAGAGCGTCACGTGAACCGGTGCCTCGACCAGCA
GGAGAGCCAGCCCGCAAAGAGGCCCCTCCGGACACTTGGATCCCAAAAGAAGAAGCCACAGGCCA
CCAAACGACGCCAGCCCCTGCTCACAAGCGCGTTGATCGCGACGAAACGACGGCTGGTCCAGAGC
GAGGACGATGATGTGACGGTTTTGCTGGTGAGGGAGACCTCCCCGGGAGAGACCGTGGTCAAAAT
AGAGGCCACTGACGCGGTGGCAGACGCAGCGACCCCGCAAAATGGACACGGGGACGCGTCTGGAG
CCGACTCCGAGGCGAAAAACGGGCCCGAAAGCAACCGGGAAGAGGCCAAAGATGGCTTTAGAGAC
TCCAAAGAACATACGAAGACAGAGACTCCCACCGGGCAGTCACAA
Found at i:62421 original size:14 final size:14
Alignment explanation
Indices: 62387--62456 Score: 88
Period size: 14 Copynumber: 5.1 Consensus size: 14
62377 TATGCGATAC
62387 GAATAGCATAA-CT
1 GAATAGCATAACCT
*
62400 GGATAGCATAACCT
1 GAATAGCATAACCT
*
62414 GAATAGCATAACAT
1 GAATAGCATAACCT
*
62428 GAAGAGCATAACCT
1 GAATAGCATAACCT
* *
62442 AAATAGCAGAACCT
1 GAATAGCATAACCT
62456 G
1 G
62457 TCAATTTTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
13 10 0.21
14 37 0.79
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (14 bp):
GAATAGCATAACCT
Left flanking sequence: Indices 61887 -- 62386
GGATACGGTGCTGACTACAAGTACAACCCGAACTACGAGCAGGGTCTCGTGGACCAGGAGTACTT
TGACGAGCAGATCGCCAAGGAGAAGCCCAAGTTCATGGACGATACCCACTTGAAACACGAGCGAG
ACCCTGCGGTGGACCCCGCGGAGTACCAGAAGGCTATTGACAAGGACCAGGAGTACCAGGAGTTC
AAGCAGGCCCAGCGCGAGGGGGTGCGGCAGCAGTATCTTTCGCTCTCGGAAGAGGAGCGGGCTAC
AGATGTGGATATTGACGAGGGGAAGGTCACCGACACCGAGGACGACGAACACTACGAGCTGGTGC
GGTACGACGACGGAGCGGTGTTTGAAGAGACGAACGCTAATGAAGACGAGAAAGAAGAGACCGAA
GAGGCACAATAACAAGAGTTCGACCTCTGACTCGATTAATGTAAATAATACAACTAATGCAACAC
TTTACAATGGCTGCAAATATGGCAGGTCATAAAAATATGCGATAC
Right flanking sequence: Indices 62457 -- 62956
TCAATTTTTTGATCAAAGGTACGAAATTAAAACCAAATACTTTTATATTAGTGAATCTATTCTAT
CCTAGACGGCCGACCGGCTGTACTGCTCCTTGGTAAGGTTCTTGAACAACTTCTTGCTCTTGCCA
ATCGTGTGCCGCCGGAACAACCGCTTGTAAAGGTGGGCCACCTTGACAAACCACTGGGACTCGCC
CATGAGCAATACGCCCAAGTTGAGCGCCGCTGCCACGAGAATCAACCAGTAGAACCCATGCGAGA
GGTTCGTCAACTGCATGAAGTCGCCCCACTTCAGCTTGCCGTCAATGGCAAACAAGCCAATGGAG
ATGGCGGTCGACACAAACAAGTTCACCATGTACGGCATGTTCTTCAGCATGGGCTCGCGGTAGGG
CGGACCCACCGAGAGCACCACAGACACGAGGATGTACTGGAAGTTGGTGAACAAAAAGAGCACCG
TGTTGTCACTCGACTTGACCTCATCATCACCGCCAGGCACCGGTT
Found at i:68655 original size:22 final size:22
Alignment explanation
Indices: 68630--68709 Score: 108
Period size: 22 Copynumber: 3.5 Consensus size: 22
68620 TCATAGGGTC
68630 CCCATCAACTCACACTCATCGA
1 CCCATCAACTCACACTCATCGA
*
68652 CCCAATGAACTCAACACTCATCGA
1 CCC-ATCAACTC-ACACTCATCGA
*
68676 CCTATCAACTCACACTCATCGA
1 CCCATCAACTCACACTCATCGA
68698 -CCACTCAACTCA
1 CCCA-TCAACTCA
68710 ACACCCACAC
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
21 2 0.04
22 22 0.43
23 14 0.27
24 13 0.25
ACGTcount: A:0.34, C:0.42, G:0.05, T:0.19
Consensus pattern (22 bp):
CCCATCAACTCACACTCATCGA
Left flanking sequence: Indices 68130 -- 68629
CTCGGGGCCGAGGACTTGGCGCTGGAGATCCCGGCCGAGATCTTGGCCAAGGGGGCCAACCGGCT
CCTGGTGGAGGAGTGGGACACGTTGTGGACGGCGTTCAGCAACTGGCCGTTTAAGCCGAGCGTGT
TGGATACCTACGACATGCTGATTGACGAGCGGCGGGTGTAGAGAGGTGTATTGCATTCGTTGTTG
TATTTTGATGGGCACCGGGTGTTTCAGGGTGGAAGTTCTGTGGGAGTCACTACGGTCCTATGGTT
AATACTATTGGCTCGTGTGGTCACAAATCCGGCCTATGGGCTATACCAGTGTCCAAGGTGTTAAC
AGAAGTTGATGTCACTGGTGATAACCGTTAATGGTATCACATACATCGGTACTCACATATCAATC
GCTGGGACCTTAGCTGATCAACCCGACTCAAAAGCACCCATAAACCAACACTCATCAATCCAGCA
TCACCAACACCACACATCGCTCATCAACTTAACATTCATAGGGTC
Right flanking sequence: Indices 68710 -- 69209
ACACCCACACCCACACCCACCCTACATAACTTAAATAACCTTGTATATATTACATCCTATCCACT
TTTCGTGTTCACGTTCGGAAGGTTGGCAAACATCTGCACCAACTTGCCCGGGTTGTAGCCACTGC
CATGGCCAAAATACAGCGAGTTCGGAAGCACCTTGAGCAAGTTGGTGATCGCCGGCGTGACAAAC
TGCGGCTCCTCGTCCACCACGGGGCTGTCGCGGACCCGGGCCTTCGCCCGGTCGTTGCGGGCCCG
CTCCACCGGCACCTCGGTCACCACCTTGATGGTCTTGCGGCGCTTGGGCTGGGCGTCGTCCTCCT
CGTCGTCGGAGTCCAACTCGTAGTGGTTGATGACGTTGGTGCCACCGTCGCTGCGGTAGCGGTCG
GTAAACAACTCGATGGGGTCGTCTCCGGGGAACAACTGCTCGTACTTCAGAATAAACAGGTCGGC
CACGTCCATCAGGAGGTACGCGTGCGCGTAGCGGATGTACTCCTT
Found at i:71002 original size:22 final size:21
Alignment explanation
Indices: 70957--70996 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
70947 AGAAGAGGAA
70957 GAAGGACGAAGAAGGGGGGAG
1 GAAGGACGAAGAAGGGGGGAG
70978 GAAGGA-G-AGAAGGAGGGGA
1 GAAGGACGAAGAAGG-GGGGA
70997 AGGGAATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.40, C:0.03, G:0.57, T:0.00
Consensus pattern (21 bp):
GAAGGACGAAGAAGGGGGGAG
Left flanking sequence: Indices 70457 -- 70956
AGTCGATCCCCACCAGCTTGACGGCGTACTCGAACGCCGCAATCACCACCCGGCGGGCGGTGTCG
CCCCCCGTGATCACGTCGTTGACCCGCCGCACGTACAGCACGTACAACCGGAGCACCTCCACCAG
CGCCACCTTCTCGAGGCAGCGGCCAAAGAGCTGTTCGACACGGGTGAACTCGCCCCGCGCAAGCT
CGTAGTTGATGTAGACACACCACTGCTTGCCGTCGTTCTTGAAGATGGCGAGGTACTTTTCAAAC
ACCCGTCGCACCTGCTCCTCCTTGTCCTTGGTTTTGACCGCAGCCAACAACTTTTCCCACTTGCC
CATGTCAAGCGGCAGTGTCTCCAACTCGTCCTCGAGACGCAGGATCACGTCGAGGTTGACCCGGG
ACATGTTGGTTGTTGAGGTTACTCGCGTGGTGATGAAGATTTCGCGCCGCGCTACCAGGTGGGTA
AGAAGGCATGGAGAGGGTATGGAGGAAGGCATGGAAGAAGAGGAA
Right flanking sequence: Indices 70997 -- 71496
AGGGAATTGGCTATGTGGCTAGTGGTGTTTGTGGTTACGGATTTGAATTGGGTTTGTTTTGGGTA
AAGGCTGGAAATGGGGCAGCTCGTTGGTAGTGTTAAGAGGTTTGCCATGAATTGAGAGTAACGCA
ATTGTGCTGTGTGTGTTATAGTAGATTACTGGTTTTTTTCTCGATGGGTAGTAACAACTTCAGAG
GTATATTGGAATATCTTACCGGAATTGTCTACGTCCGGAGATGTTACTAAATATGGCAATTGTGG
AAGCATCACCTTCACCTTCTTCTCTCATCCTCAACTCCCTCTCCGTCCTCTCCTCTACCTCTCTT
CTCCGACCTCCATTCCTCTCTCTCTCCTCCCATTCTCCTCCATTCTCCTCCCATTCTCCTCCCAT
CCACCTCTCTATCCATATCACCGCACAGTGCGGCTTTTTTCACCATGACTACCCTCTACGTGTGG
GGCCGAGAGGGCACCATCAGCTCGATCTTCCCGGAACTGCTAGCC
Found at i:71366 original size:10 final size:11
Alignment explanation
Indices: 71344--71386 Score: 79
Period size: 11 Copynumber: 4.0 Consensus size: 11
71334 TTCCTCTCTC
71344 TCTCCTCCCAT
1 TCTCCTCCCAT
71355 TCTCCT-CCAT
1 TCTCCTCCCAT
71365 TCTCCTCCCAT
1 TCTCCTCCCAT
71376 TCTCCTCCCAT
1 TCTCCTCCCAT
71387 CCACCTCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 10 0.32
11 21 0.68
ACGTcount: A:0.09, C:0.53, G:0.00, T:0.37
Consensus pattern (11 bp):
TCTCCTCCCAT
Left flanking sequence: Indices 70844 -- 71343
GGGACATGTTGGTTGTTGAGGTTACTCGCGTGGTGATGAAGATTTCGCGCCGCGCTACCAGGTGG
GTAAGAAGGCATGGAGAGGGTATGGAGGAAGGCATGGAAGAAGAGGAAGAAGGACGAAGAAGGGG
GGAGGAAGGAGAGAAGGAGGGGAAGGGAATTGGCTATGTGGCTAGTGGTGTTTGTGGTTACGGAT
TTGAATTGGGTTTGTTTTGGGTAAAGGCTGGAAATGGGGCAGCTCGTTGGTAGTGTTAAGAGGTT
TGCCATGAATTGAGAGTAACGCAATTGTGCTGTGTGTGTTATAGTAGATTACTGGTTTTTTTCTC
GATGGGTAGTAACAACTTCAGAGGTATATTGGAATATCTTACCGGAATTGTCTACGTCCGGAGAT
GTTACTAAATATGGCAATTGTGGAAGCATCACCTTCACCTTCTTCTCTCATCCTCAACTCCCTCT
CCGTCCTCTCCTCTACCTCTCTTCTCCGACCTCCATTCCTCTCTC
Right flanking sequence: Indices 71387 -- 71886
CCACCTCTCTATCCATATCACCGCACAGTGCGGCTTTTTTCACCATGACTACCCTCTACGTGTGG
GGCCGAGAGGGCACCATCAGCTCGATCTTCCCGGAACTGCTAGCCGCAGCGTGGGTGATGGCCGA
GTCCTCCCACCCGGTCACCGTGGTCACCGCCAACAACACCAACCTCTCGTCCATCGGCAAGCTCC
CCGTGCTTGTCACCCCGGAAGGCAAACTACAGGGCTACCGAGCCATTGCACGCTACGCCCGGGGC
AAGGGACCATCTGATCTTGTTGCCAGCGGCCAGTTGGCGATGATGGCCAACCAGTTCGACGCCCT
CACCAACTACGTGTACTTTGTCAACCTGCGCAACTACGAGGAGTACACCCGCAAGGTGTTTGGCA
ACTACTTCCCATTCCCGATGATGTACAACCAGCCCCTCCACTTCTACAACTGTGCCCAGCGCCAG
GCCCACTACCACGGGTTGAACCCAAACAAGGGCGGGCTCTTCTCG
Found at i:71370 original size:21 final size:21
Alignment explanation
Indices: 71344--71383 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
71334 TTCCTCTCTC
71344 TCTCCTCCCATTCTCCTCCAT
1 TCTCCTCCCATTCTCCTCCAT
71365 TCTCCTCCCATTCTCCTCC
1 TCTCCTCCCATTCTCCTCC
71384 CATCCACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.55, G:0.00, T:0.38
Consensus pattern (21 bp):
TCTCCTCCCATTCTCCTCCAT
Left flanking sequence: Indices 70844 -- 71343
GGGACATGTTGGTTGTTGAGGTTACTCGCGTGGTGATGAAGATTTCGCGCCGCGCTACCAGGTGG
GTAAGAAGGCATGGAGAGGGTATGGAGGAAGGCATGGAAGAAGAGGAAGAAGGACGAAGAAGGGG
GGAGGAAGGAGAGAAGGAGGGGAAGGGAATTGGCTATGTGGCTAGTGGTGTTTGTGGTTACGGAT
TTGAATTGGGTTTGTTTTGGGTAAAGGCTGGAAATGGGGCAGCTCGTTGGTAGTGTTAAGAGGTT
TGCCATGAATTGAGAGTAACGCAATTGTGCTGTGTGTGTTATAGTAGATTACTGGTTTTTTTCTC
GATGGGTAGTAACAACTTCAGAGGTATATTGGAATATCTTACCGGAATTGTCTACGTCCGGAGAT
GTTACTAAATATGGCAATTGTGGAAGCATCACCTTCACCTTCTTCTCTCATCCTCAACTCCCTCT
CCGTCCTCTCCTCTACCTCTCTTCTCCGACCTCCATTCCTCTCTC
Right flanking sequence: Indices 71384 -- 71883
CATCCACCTCTCTATCCATATCACCGCACAGTGCGGCTTTTTTCACCATGACTACCCTCTACGTG
TGGGGCCGAGAGGGCACCATCAGCTCGATCTTCCCGGAACTGCTAGCCGCAGCGTGGGTGATGGC
CGAGTCCTCCCACCCGGTCACCGTGGTCACCGCCAACAACACCAACCTCTCGTCCATCGGCAAGC
TCCCCGTGCTTGTCACCCCGGAAGGCAAACTACAGGGCTACCGAGCCATTGCACGCTACGCCCGG
GGCAAGGGACCATCTGATCTTGTTGCCAGCGGCCAGTTGGCGATGATGGCCAACCAGTTCGACGC
CCTCACCAACTACGTGTACTTTGTCAACCTGCGCAACTACGAGGAGTACACCCGCAAGGTGTTTG
GCAACTACTTCCCATTCCCGATGATGTACAACCAGCCCCTCCACTTCTACAACTGTGCCCAGCGC
CAGGCCCACTACCACGGGTTGAACCCAAACAAGGGCGGGCTCTTC
Found at i:72639 original size:15 final size:15
Alignment explanation
Indices: 72619--72648 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
72609 TCTAAACCAC
72619 TCTATACTCCTCTCT
1 TCTATACTCCTCTCT
72634 TCTATACTCCTCTCT
1 TCTATACTCCTCTCT
72649 ACACGTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.40, G:0.00, T:0.47
Consensus pattern (15 bp):
TCTATACTCCTCTCT
Left flanking sequence: Indices 72119 -- 72618
TGGCGTATATCCACGCGTTGACCAACCCTCACTTGGCCGACCACTTTATTGCCACCAACTTGGAG
GCCAACCACCCGGAGATGGTGGAGCGGATGCAGCTGGCAGCGAAGCGGTACCAGGGGCTTGCGTT
GGAGGTGAGAGCACCGGAGGGGTTGGAGAAGCCGACCCTTTTGAACGAGGTGAGGTACATGTTTG
GACAGTACGTGTAAATAGACAATAGATTAAACAAACCGAGCAAGTGGATTGGTAGTGGTTGTTGC
TTGAGGCACGAGTGGTGTGAGGACTCTCCTCGCATCAGCCTAAGGGTGAACACTGTTTTGTCTGA
GTAGTGCTGAGGATCGGAAGCTTTAAACAATATACATTGGCTTGATCCACCAGGGTACACAGGGT
ACAACTTGTTTGGTCCCTTTCTGCCTTGCCAAATCTACTCTCTATGGGGACATTGACATCCCAAT
AAATTTCTGATACGTCGTCATGTCCTCGGTACTCCTCTAAACCAC
Right flanking sequence: Indices 72649 -- 73148
ACACGTCTAAATGTTTTTCTCGCTCCTCCTTACTCTCACCTCATCAACCCCTCAATTCTAATTCT
GTACTTTTCCGCCTCACCCTTCTCTCCTCCTCCTGTCTACGTTCTCCCCTCTCGCTTCCTTTACC
CTATCCTCCCGGCACGGCTGCGGCTTTTTCCTGTATTAGCGCGGATATATACACACCTGGCCATC
GCCCACGGCCACCGCGCAAAAAAAACTCACCTATTTTCTATACGCCATTCTTGGCCTTTATAGTT
TCATTTGGTGATCTCCCGTACACTTAATGGTGGAAAACCTGGCCATATATCAATTCGACGGTAAC
GAACCATGCGGATGCGACCCTGTCCATGGGTGGCTCCCTTTCGCCATGTCTCGTAAGCGTCCCAC
ATCGTAATCAGATCAACAACGCGTTTCGCGGGAATTTCCATCCCTCTCTAGACTACGCCAACACC
CATCTACCCCACCGCTTCTACACCGCCCAGGGTGTCTCTACGCAC
Found at i:76909 original size:12 final size:12
Alignment explanation
Indices: 76889--76935 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
76879 TGCAGCAAAT
76889 ATGGCAACCACC
1 ATGGCAACCACC
*
76901 ATGGTAACCACC
1 ATGGCAACCACC
* *
76913 ACGACAACCACC
1 ATGGCAACCACC
76925 ATGGCAACCAC
1 ATGGCAACCAC
76936 TACGGCAGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.36, C:0.40, G:0.15, T:0.09
Consensus pattern (12 bp):
ATGGCAACCACC
Left flanking sequence: Indices 76389 -- 76888
CGTGTGGGTTGTATGTGGAAGGAACCTCAATGGCACGGTGAAAAATGCAACAAGCCAGGTGAGGG
TTTTAAATGTAGTGAAAAGAAATCCGATCTTAATAAAAAAACCGTAAAGGAAGTGTCCGACGCGG
GCCCTCCTGCACACAACCCGGTCATACCTACGTGCGGTTGCACTATTGTCAGCAACTTTTTTCGC
GCGGTTATTGGCTGTTGTGCCAGGGCCGAGTCCGGACGCCTCGTGCCCGCAGTTCGCACTTCAAA
GTGGCGTCAGGCCCAGCCAATAGACTGTGGGTCGATAGTAATGGTGCTTAATGTGGGGAACATCT
AAGCGAACGATGGCAGCGACATGTCAGTACCGGCAAAAGCACCGGGGCGATGCGCTGACCCATCA
CCTTAGTAGTCACGGGATGCGGGATTTGCGCCACCAGCAACCGTGACTGTTTTTTGTGTCGCGAT
CACCAGCGAGGTGAGATCGTCAGGCAGCAGGTGACTGCAGCAAAT
Right flanking sequence: Indices 76936 -- 77435
TACGGCAGGTGGTCAAGACGTAGATGACCAAAAGCACGGTGCCACGGCGATTTTCCCCGGAATGA
TTACTCAATTGTTGTAGACACGGCGCTCTATTATTCGCGGTCAATGATAACGACGACTACGCCGC
GTGGTCTAGACAACTGACAAGGCGCGGGGCTACAGTAGTGAACTCGGTACCAGACAAACGGTCTG
GTGACGTATCCGTCAGCCCTGCCACCGTTGCCAAAAAAAGCTTCGTGGGCTGGTGTTTACCATTC
GCCCCACTATTTTTAGAATTCGCGATTACAAATCAGGCGGCGGGCTGCGAACCAGAGCCCACCAC
GGGAGGTCAGCTTTCTTGGCCACCACGAAAACAGCGGCGCAGAAAGCGCCACAGTCGGCATCTCC
ACCGGCGAAACCCCAAGTTTTGTGCTTGTGTCCCGAGTTACAATTGACCGCCCACCTTCTCTGCA
GCGAACCCTGCGAAACACGCTAATCCGGTGGAAATTTTCATATAC
Found at i:76942 original size:12 final size:12
Alignment explanation
Indices: 76891--76942 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
76881 CAGCAAATAT
*
76891 GGCAACCACCAT
1 GGCAACCACCAC
*
76903 GGTAACCACCAC
1 GGCAACCACCAC
* *
76915 GACAACCACCAT
1 GGCAACCACCAC
*
76927 GGCAACCACTAC
1 GGCAACCACCAC
76939 GGCA
1 GGCA
76943 GGTGGTCAAG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.35, C:0.40, G:0.17, T:0.08
Consensus pattern (12 bp):
GGCAACCACCAC
Left flanking sequence: Indices 76391 -- 76890
TGTGGGTTGTATGTGGAAGGAACCTCAATGGCACGGTGAAAAATGCAACAAGCCAGGTGAGGGTT
TTAAATGTAGTGAAAAGAAATCCGATCTTAATAAAAAAACCGTAAAGGAAGTGTCCGACGCGGGC
CCTCCTGCACACAACCCGGTCATACCTACGTGCGGTTGCACTATTGTCAGCAACTTTTTTCGCGC
GGTTATTGGCTGTTGTGCCAGGGCCGAGTCCGGACGCCTCGTGCCCGCAGTTCGCACTTCAAAGT
GGCGTCAGGCCCAGCCAATAGACTGTGGGTCGATAGTAATGGTGCTTAATGTGGGGAACATCTAA
GCGAACGATGGCAGCGACATGTCAGTACCGGCAAAAGCACCGGGGCGATGCGCTGACCCATCACC
TTAGTAGTCACGGGATGCGGGATTTGCGCCACCAGCAACCGTGACTGTTTTTTGTGTCGCGATCA
CCAGCGAGGTGAGATCGTCAGGCAGCAGGTGACTGCAGCAAATAT
Right flanking sequence: Indices 76943 -- 77442
GGTGGTCAAGACGTAGATGACCAAAAGCACGGTGCCACGGCGATTTTCCCCGGAATGATTACTCA
ATTGTTGTAGACACGGCGCTCTATTATTCGCGGTCAATGATAACGACGACTACGCCGCGTGGTCT
AGACAACTGACAAGGCGCGGGGCTACAGTAGTGAACTCGGTACCAGACAAACGGTCTGGTGACGT
ATCCGTCAGCCCTGCCACCGTTGCCAAAAAAAGCTTCGTGGGCTGGTGTTTACCATTCGCCCCAC
TATTTTTAGAATTCGCGATTACAAATCAGGCGGCGGGCTGCGAACCAGAGCCCACCACGGGAGGT
CAGCTTTCTTGGCCACCACGAAAACAGCGGCGCAGAAAGCGCCACAGTCGGCATCTCCACCGGCG
AAACCCCAAGTTTTGTGCTTGTGTCCCGAGTTACAATTGACCGCCCACCTTCTCTGCAGCGAACC
CTGCGAAACACGCTAATCCGGTGGAAATTTTCATATACGAGCCCC
Found at i:93633 original size:12 final size:12
Alignment explanation
Indices: 93616--93642 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
93606 TATGATGACT
93616 ACCTCTTTCATC
1 ACCTCTTTCATC
93628 ACCTCTTTCATC
1 ACCTCTTTCATC
93640 ACC
1 ACC
93643 CATTAACGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.44, G:0.00, T:0.37
Consensus pattern (12 bp):
ACCTCTTTCATC
Left flanking sequence: Indices 93116 -- 93615
GTTACGGTCACGCCGTCTTGAGAAAGACCGACCCCAGATACACCGCCCAGAGAGAGTTTGCTCTC
AAGCACATGCCCGACTACGAGTTGTTCAAGTTGGTGTCTAACATCTACGAGGTCGCCCCCGGCGT
GTTGACCAAGCACGGTAAGACCAAGAACCCCTGGCCCAATGTGGACTCCCACTCCGGTGTCCTCT
TGCAGTACTACGGCTTGACCGAGGAGTCTTTCTACACCGTGTTGTTCGGTGTTTCCAGAGCCTTC
GGTGTGTTGCCTCAGTTGATCATCGACCGTGGTGTTGGTATGTCGATTGAGCGCCCCAAGTCTTT
CTCCACCGAGAAGTACATGGAGTTGGTCAAGAACCTCGGCAAGTAAATGGCTGATCCCTAGCATT
TTATTTATTTGGTACTATTTATTACGTAGTTATGTTGAAAACGATCTTGTATTTATTCAGAGTTT
GTAGTACATGAATTGGTTAATTAAGGAGTTGTAATTATGATGACT
Right flanking sequence: Indices 93643 -- 94142
CATTAACGTTTTACTGTTTTAGTATCGTTCATCCTTCCTTCGTACCGTGTAGTGAATCAACTCAG
TTTGAATTTTTCAGACGCGACACCATGGCTGACATCTCAGTGTACATCACCTCCGGGTTGACGTC
GAGCGAGCGGCGAATCAGCCCACAATGGGAGCTCGAGTACCTCAAGGAGCGTCTTGAGCTCATCA
CTGGCGTGGCTGCTGCCGACCAGCAGCTCCAGTACTATCCCCTGGACGACTCGTCGGAGTACGTG
GTGCTTACTCCTGAGGTGGCCACCGGGGGCACCACGGTTGAGGCGTTCAACATCCGCCCGTACTC
GCGGATCCACGTGGCTGACACCAACCCGGACTCCGAGGCGGCCAAGCTTGAGGCTGCCAATGGCG
ACACCGCGGAGTCGTACGACATGACCGAGGAGGAGTATGCCCAGCGCGGCGACACGGTGTTGCAG
TGGAAAAAGCAGAACCAGTTGGGCCGATTCGACCCTGCGGCTGAC
Found at i:96976 original size:14 final size:14
Alignment explanation
Indices: 96957--96986 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
96947 TAAAGACCAG
96957 CCCTCGAACGCCAA
1 CCCTCGAACGCCAA
96971 CCCTCGAACGCCAA
1 CCCTCGAACGCCAA
96985 CC
1 CC
96987 ACCAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.53, G:0.13, T:0.07
Consensus pattern (14 bp):
CCCTCGAACGCCAA
Left flanking sequence: Indices 96457 -- 96956
CCCGCTGGCGAAGGCTACCCGATTTTAAGCGACATCATTCGTTAAGAACCGATCCACGGGCTCGA
GTGCATTCCTCGATCGTGTATTACGAACCGAGAAATGTAATTTTCCTGTAGACCCGAGGAACAGC
TTGTAAACGGGACTGGCTATAACAGTCCCGATAATGCAACGTCGAGAGAATCTTCCGCGTCTGAT
TGTTTCCGGAAATACCGGCTCGAGCCCTTTGTGAGTCCCGAATAGGCAACTACCTAGGTTTCCTG
ATCCGTCAGCTATCAGCTTTCTGCTTGGCTGACAGACGCAGTAACGAAACTAAACCAACCACCAG
AGCGATCAAAATAGCCTGAATATGCGCATCTTTCAACTTAAAGTCCCACGTGGGCACCTCTGATG
GCTGGGGGGCCGCGAGCGGCGCCCCCCAAACCCCCCAACGCTTTCTTTTCGCAACCACATCTCCA
TTTCTTTCTCCCACTTCGCTCGAAGATCAACCCACTAAAGACCAG
Right flanking sequence: Indices 96987 -- 97486
ACCAACAACCACTGCCAGCCAGCAACTCCAACGTCCCAACAGGATACTATTATTCCCTTTATTAT
GTCTATAAATACCGTGTCATTAGTAAGGGCGGAACCGCTTCTTCTCCCGCATCGTCTGCACCCGC
TCCTGGTCCTCCTTGTACTTGCGCAACAAGTCGTTCATCTCCTCCTTCTTGCGCTGGCGCATCTG
GAACCGGTAGAAGTCGTCCTTCTCCTTTTTCTTCATCTTGGCCGATGCCTTGTCCGCCTCCACCG
TCTGCGCCAACTTCTGCTTACCAAGGATACCCAGCTTGGTCTTGCGGTTGGATCCGACCACCATG
GTGAAACCGTCCGCGTCCACGAGCGCCTCCTGGCGCAACGCCTGCTGCGAGCGGTGCTCGGCCTC
GTCAAACGCCGCCAAAGCGTCCAGCACCTCCAGCGCCAACGCCTCCGGGTCCTTGATCTGGCGCC
GGAGCTTGTCAGCGTAGTACTGGGCGGTAATCTGCGGCTGCGGCC
Found at i:101793 original size:19 final size:19
Alignment explanation
Indices: 101769--101805 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
101759 ACCAATCACG
*
101769 TCTGATTACCCATTCTCCT
1 TCTGATTACCCACTCTCCT
*
101788 TCTGATTATCCACTCTCC
1 TCTGATTACCCACTCTCC
101806 CTCCGTTGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.05, T:0.41
Consensus pattern (19 bp):
TCTGATTACCCACTCTCCT
Left flanking sequence: Indices 101269 -- 101768
GCGCCAGACGCCCATCGACGACGTCAACGTGTTTGAGGTGGTGGCCCGTGCGGTGGTGGAGATGA
AGCAGCTGGAGCCGCAAAAGTACGAGACGATCTTTGGCGACCTCGACGACTCCCACAAGCAGTTG
TTGCAGCTGGTGGTGTACAGCCAGAACCAGAAATAGTGATAGAGGCTATAGATTAATAAGGCAGC
GCCTAGGGAAGGTAACGGTTGGTGTAGAGGGGTTGAATATGGCTCCGACTTTGACACAGAAACAA
AAGGTAGGTCATGAGATGCAAAGACTTGTTTTGGGTCAACAGAGCTAGTCTAATGTAAATCTGAT
GCTGACTTTGGCTCAAATGAGCGCAGTTCTTGATCCCAATTGTTGGAGTCAATACAATCACTGTT
GCGCACTTCGGATCAGAAGACACAATATACAGCTATAACCCACCCTTTCAGCTAGTCAGTACAAT
TATAAAAACTCTACTACAATCCCCAAACGCTACAGACCAATCACG
Right flanking sequence: Indices 101806 -- 102305
CTCCGTTGTCCCCCTCTCCCTCTCCACTGTCTTTTCCTTATCATGCGCGTTGCCACAAAATCCAC
GGCAACCACTATGTTCTCAGGATTCGGAGGGATGTTTGGCGGGGGCTTCGGAATGCCCCAGGCCA
GCAACCACTTCGAGGACCACTTCCGGTGCTACCCCATTGCCATGATGAACGACACCATCCGCAAG
GACGACGCCAACTACGGTGACAAGATCTTTTTGCCACCTCTGACCCTCAACAAGTTGACGATGTT
GCACATCCGGTACCCGATGTTGTTCTCGTTGACCAACGAGACCGCCGGCAAGACCACCCACTCCG
GTGTGCTTGAGTTTGTTGCCGAGGAGGGCCGGGTGTACATCCCGCAGTGGATGATGGCCACCTTG
GGGGTCAACCCGGGCCAGATCATCAGTGTCACCAACTGCGACTTGCCCAACGGACAGTACGTCAA
GATCGAGCCCCAGCTGGTGGATTTCCTCGACATCTCCGACCCCAA
Found at i:103980 original size:10 final size:10
Alignment explanation
Indices: 103955--103990 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
103945 TTATTTGACA
103955 GGAGGCGA-G
1 GGAGGCGATG
*
103964 AGAGGCGATG
1 GGAGGCGATG
103974 GGAGGCGATG
1 GGAGGCGATG
103984 GGAGGCG
1 GGAGGCG
103991 GGGTAGCGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.22, C:0.11, G:0.61, T:0.06
Consensus pattern (10 bp):
GGAGGCGATG
Left flanking sequence: Indices 103455 -- 103954
TGCAAGGTGGTCCGGGTGTCGTCGACCTCGTCAATGATGAGCACGTTCTTGCCCACCAAGTCGAT
CCCCGACTGCTCGTAGTCGATCCACTGGGTTCTCACCACCTCGGTGCCCACGGTCTCGATGTCAG
CACCGGCAACCTCCTCGTACAACGACAAGATGACGGCGTAGATGCGAATGTTGGGCTGGCCGGGC
TTGCGGACAAACGTTCTCAACATTCTCGCGGGGATGAACCCACCACCGCCAATGGCGATGATCAA
GTCGGGGTTGAACTCCTTGATGGTCTCAGAGGCCTGCTGGCACAACTGATGGATGTTGTTGTACG
AAATGTACATTTTCTCGTCGGCGGCAGACATGGTTGGCTGGGGCTTTGGGTCGTTGGCTACGGTG
AGACCGAATAGAATTTTCTGGCGGGCAGCGGGCAATATATTTCGCAACTGCCGTTACATGCATTG
CGCGATGAGGATTAAATAATGGTGCATGACGGACGTTATTTGACA
Right flanking sequence: Indices 103991 -- 104490
GGGTAGCGGGGGAGAGGAGGTGGAGGAGGAGAATATGGGGTTTTGGATAAGGCCGGATTTGCGGA
TTTTTGGCACCAACCGGATATATCGTGGCAAGAGCGTGGTCGATTAGAAAAAAGAAATTCACCCC
AGGTGGCACTTCGTGCCCCGAAAGGAAGCCGTGTCGCGAATGGGGTAGGTGACGACGATTGGCCT
GTCCACGTGTATGGAGAAAGTAGACAAAAGAGTAGATAGGCATGTTTGTCCCAATCGAGTGGTTT
GTGGCAATAATCGCTTATCTGAGGTTTACAGCATCGGGTCAATTGAGACGAATGCAAACACGCAG
CGTGTACTGGCCACAAACAGAAAATACTAGTATTCTGTTAGACTGTACTACAATTACTCTCTAAG
CAATCATCAGCCCCTTGTCCTCAGCCACATTCTCCAGCCGTTCCCAAGCATTCGCCGGAAATCAA
CTGCCGGGGACCCGTTTGGTCTCCTTCTCACCCGTGCTCGTAACC
Found at i:115235 original size:25 final size:25
Alignment explanation
Indices: 115207--115300 Score: 143
Period size: 25 Copynumber: 3.8 Consensus size: 25
115197 GTAGAGGGAG
115207 AAGGTTGGGTTAATGGGTGGAAGAA
1 AAGGTTGGGTTAATGGGTGGAAGAA
115232 AAGGTTGGGTTAATGGGTGGAAGAA
1 AAGGTTGGGTTAATGGGTGGAAGAA
* *
115257 AAGATTGGGTTAATGGGTGGAAGTA
1 AAGGTTGGGTTAATGGGTGGAAGAA
* **
115282 AGGGTTGGACTAATGGGTG
1 AAGGTTGGGTTAATGGGTG
115301 TGAAAGGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.30, C:0.01, G:0.44, T:0.26
Consensus pattern (25 bp):
AAGGTTGGGTTAATGGGTGGAAGAA
Left flanking sequence: Indices 114707 -- 115206
TGTTTGAGCTTTTGACCGGCGATTACTTGTTCGACCCCCACGAGGGCAAGTGCTACGACAAGGAC
GAGGACCATCTCGCCCAGATCATCGAGTTGTTGGGAGAAATGCCGCTGGACCAGTACTTGGTGGA
CTGCAAGTACACGTCCAAGTTTTTCAAGATCGACGACAACCACCAGACGGCGCTCCGCCACATCG
ACAACTTGAAGATGTGGGGGTTGGCCGACGTGTTTGTCGAGAAATACAAGTTTGACCGTGGCGAC
GTCGCGCTCATGCTGGACTTTATTCTGAAGTGCTTGCAGTTTGAGTTGACCGAGCGGTACGACGC
CGCGCTGTTGTTGAACCACCCGTGGCTTACGGGCACCGACTCCACGTGCGAGAACAAATGTCATG
ACGTGCCAGGTTACTTTGGCACGTTCTAATGTTTTTATAATTTATTTGGGATACGGATGGTTTAG
GAAAATTACATGTTTAGTAGTGTAAGTGAGGTATGGTAGAGGGAG
Right flanking sequence: Indices 115301 -- 115800
TGAAAGGATTGGATAAGGCTGATGGGTGGGAGATCGATATGGGCTTGGTTGGGTTGATCAGAGTC
TTAGAGACCAGATATGCGGCTTGGGTGAAGAACGACTAGGGGTGTTGAGAGATTGGCAGTTTCAA
CAAAGAGTGGGTAGACAGAAAATTGTAGAATGAGTGTAAAATACAGAGCCACAGAGTAGGTGGTA
GTAGAGCCATTGATAGTAGCCCCTAAATGCTAATTCGCAGATCACTACTGACCGATAACCCCTAA
CAATAGCATGGCTAAAAGGGGCAGGCGTCTACTCATTGTCACGGTTGAACGGGTCTCCAGGCCAT
GGCACAAAAACCAACTGGCCAGACTGGCGGAACTCGAGGGCACCCCAAACGGACGACAGCAACCC
CAACCGACTCACTGAGGGGTACGGCTCGGGGGCTCGTGTCGTATCTCGGTTGCGACAAAGAGGGG
AGCACCTGGATGCATGCTTGCGCCCGTCCCTATTCGGAACCATTG
Found at i:117499 original size:8 final size:8
Alignment explanation
Indices: 117458--117546 Score: 63
Period size: 8 Copynumber: 11.2 Consensus size: 8
117448 ATGGGGGGTA
117458 GAGCAGTG
1 GAGCAGTG
* *
117466 GAGTATTG
1 GAGCAGTG
*
117474 TAGCAGTG
1 GAGCAGTG
* *
117482 GAGGATTG
1 GAGCAGTG
117490 GAGCAGTG
1 GAGCAGTG
*
117498 GAG-AGCG
1 GAGCAGTG
117505 GAGCAGTG
1 GAGCAGTG
* *
117513 AAGTAGTG
1 GAGCAGTG
* *
117521 GAGGAATG
1 GAGCAGTG
*
117529 GAGTAGTG
1 GAGCAGTG
*
117537 AAGCAGTG
1 GAGCAGTG
117545 GA
1 GA
117547 TCATTAAAGT
Statistics
Matches: 58, Mismatches: 22, Indels: 2
0.71 0.27 0.02
Matches are distributed among these distances:
7 6 0.10
8 52 0.90
ACGTcount: A:0.29, C:0.07, G:0.46, T:0.18
Consensus pattern (8 bp):
GAGCAGTG
Left flanking sequence: Indices 116958 -- 117457
TCAAGGAGAACTACAAGCGCGAGGTGATCGAGTACGACGAGTTGCTCGAATTGGTCAAGGACGGC
GCCATTGGCCGCGATTACGTGTTGTTTGACGCGCGGCCGCGCGAGCGGTTTGACGGCTCGGTGGC
CGAGCCTCGCGCCGGGTTGAAGCTGGGCCACATTCCCGGGTCGACCCTGGTGCCGTTCCCCACCG
TGCTCACTGCGGACAAGAACTTCAAGCTGAAGGCCGAGCTCCAGAAGGTGTTTGGCGACGCTGGG
TTCGACACCCTGCTGGCGCTGGCGTTTTTGGACGGCAAGAAGGGGGTGATTGTGTCGTGTGGGTC
TGGGACCACCGCGGTGGTGTTGCGGTTTGCCATCCAGCAGGTGTTGGGGTTGAACGTGCCCATCC
GGGTGTACGACGGGTCGTGGAGCGAGTGGGGCCACCGGGCGCCCGAGGAGTACGTGGAAAAGCTG
TAGAGTAGACAATAGCATAGACAGAGAGAGTATTGATGGGGGGTA
Right flanking sequence: Indices 117547 -- 118046
TCATTAAAGTGGGGTACCAGGGCTGTGTTCACTCCATTCACGGGCAACTTACTGGCCATTGGTCA
AGTCTTGTCATTAGTGAATAGAACGTATCTATCATGGTGGCTTTGTCAAAAGGGGTGATTACTGA
TAAGATGACATCATTGGAGGGGTGTAATTACGACAGCGACAAAATGAGGATTGTAATTGATGACA
TCATTGGGGAATGTGCCAAGACATCATTACGAGGCGTCGTTTGATTGTAATTAAGATGAGATGGG
GCGGGGAATGGAACGTGCTAATGGATAAGAAACAAGCGAATGTGAGGGGTAGTAAACCAGTCGCT
CGTAACACCAGAATATAGAGCATTCACCTGGTAGAGTGCCTACACTCGCGTTCAAGAACATCACC
GCATTGATTCGAAGTAGACAGACTCCGACTCTATCCACAGTTCCCACAGTACCCTTTCCCATCCC
TACACCTCATAACCAAAACCAGAAAAACCATTCTTCTACAGCCCA
Found at i:117509 original size:15 final size:16
Alignment explanation
Indices: 117475--117512 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
117465 GGAGTATTGT
**
117475 AGCAGTGGAGGATTGG
1 AGCAGTGGAGGAGCGG
117491 AGCAGTGGA-GAGCGG
1 AGCAGTGGAGGAGCGG
117506 AGCAGTG
1 AGCAGTG
117513 AAGTAGTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.26, C:0.11, G:0.50, T:0.13
Consensus pattern (16 bp):
AGCAGTGGAGGAGCGG
Left flanking sequence: Indices 116975 -- 117474
CGCGAGGTGATCGAGTACGACGAGTTGCTCGAATTGGTCAAGGACGGCGCCATTGGCCGCGATTA
CGTGTTGTTTGACGCGCGGCCGCGCGAGCGGTTTGACGGCTCGGTGGCCGAGCCTCGCGCCGGGT
TGAAGCTGGGCCACATTCCCGGGTCGACCCTGGTGCCGTTCCCCACCGTGCTCACTGCGGACAAG
AACTTCAAGCTGAAGGCCGAGCTCCAGAAGGTGTTTGGCGACGCTGGGTTCGACACCCTGCTGGC
GCTGGCGTTTTTGGACGGCAAGAAGGGGGTGATTGTGTCGTGTGGGTCTGGGACCACCGCGGTGG
TGTTGCGGTTTGCCATCCAGCAGGTGTTGGGGTTGAACGTGCCCATCCGGGTGTACGACGGGTCG
TGGAGCGAGTGGGGCCACCGGGCGCCCGAGGAGTACGTGGAAAAGCTGTAGAGTAGACAATAGCA
TAGACAGAGAGAGTATTGATGGGGGGTAGAGCAGTGGAGTATTGT
Right flanking sequence: Indices 117513 -- 118012
AAGTAGTGGAGGAATGGAGTAGTGAAGCAGTGGATCATTAAAGTGGGGTACCAGGGCTGTGTTCA
CTCCATTCACGGGCAACTTACTGGCCATTGGTCAAGTCTTGTCATTAGTGAATAGAACGTATCTA
TCATGGTGGCTTTGTCAAAAGGGGTGATTACTGATAAGATGACATCATTGGAGGGGTGTAATTAC
GACAGCGACAAAATGAGGATTGTAATTGATGACATCATTGGGGAATGTGCCAAGACATCATTACG
AGGCGTCGTTTGATTGTAATTAAGATGAGATGGGGCGGGGAATGGAACGTGCTAATGGATAAGAA
ACAAGCGAATGTGAGGGGTAGTAAACCAGTCGCTCGTAACACCAGAATATAGAGCATTCACCTGG
TAGAGTGCCTACACTCGCGTTCAAGAACATCACCGCATTGATTCGAAGTAGACAGACTCCGACTC
TATCCACAGTTCCCACAGTACCCTTTCCCATCCCTACACCTCATA
Found at i:117546 original size:16 final size:16
Alignment explanation
Indices: 117458--117546 Score: 90
Period size: 16 Copynumber: 5.6 Consensus size: 16
117448 ATGGGGGGTA
*
117458 GAGCAGTGGAGTATTG
1 GAGCAGTGGAGTAGTG
* * *
117474 TAGCAGTGGAGGATTG
1 GAGCAGTGGAGTAGTG
*
117490 GAGCAGTGGAG-AGCG
1 GAGCAGTGGAGTAGTG
*
117505 GAGCAGTGAAGTAGTG
1 GAGCAGTGGAGTAGTG
* *
117521 GAGGAATGGAGTAGTG
1 GAGCAGTGGAGTAGTG
*
117537 AAGCAGTGGA
1 GAGCAGTGGA
117547 TCATTAAAGT
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
15 12 0.20
16 47 0.80
ACGTcount: A:0.29, C:0.07, G:0.46, T:0.18
Consensus pattern (16 bp):
GAGCAGTGGAGTAGTG
Left flanking sequence: Indices 116958 -- 117457
TCAAGGAGAACTACAAGCGCGAGGTGATCGAGTACGACGAGTTGCTCGAATTGGTCAAGGACGGC
GCCATTGGCCGCGATTACGTGTTGTTTGACGCGCGGCCGCGCGAGCGGTTTGACGGCTCGGTGGC
CGAGCCTCGCGCCGGGTTGAAGCTGGGCCACATTCCCGGGTCGACCCTGGTGCCGTTCCCCACCG
TGCTCACTGCGGACAAGAACTTCAAGCTGAAGGCCGAGCTCCAGAAGGTGTTTGGCGACGCTGGG
TTCGACACCCTGCTGGCGCTGGCGTTTTTGGACGGCAAGAAGGGGGTGATTGTGTCGTGTGGGTC
TGGGACCACCGCGGTGGTGTTGCGGTTTGCCATCCAGCAGGTGTTGGGGTTGAACGTGCCCATCC
GGGTGTACGACGGGTCGTGGAGCGAGTGGGGCCACCGGGCGCCCGAGGAGTACGTGGAAAAGCTG
TAGAGTAGACAATAGCATAGACAGAGAGAGTATTGATGGGGGGTA
Right flanking sequence: Indices 117547 -- 118046
TCATTAAAGTGGGGTACCAGGGCTGTGTTCACTCCATTCACGGGCAACTTACTGGCCATTGGTCA
AGTCTTGTCATTAGTGAATAGAACGTATCTATCATGGTGGCTTTGTCAAAAGGGGTGATTACTGA
TAAGATGACATCATTGGAGGGGTGTAATTACGACAGCGACAAAATGAGGATTGTAATTGATGACA
TCATTGGGGAATGTGCCAAGACATCATTACGAGGCGTCGTTTGATTGTAATTAAGATGAGATGGG
GCGGGGAATGGAACGTGCTAATGGATAAGAAACAAGCGAATGTGAGGGGTAGTAAACCAGTCGCT
CGTAACACCAGAATATAGAGCATTCACCTGGTAGAGTGCCTACACTCGCGTTCAAGAACATCACC
GCATTGATTCGAAGTAGACAGACTCCGACTCTATCCACAGTTCCCACAGTACCCTTTCCCATCCC
TACACCTCATAACCAAAACCAGAAAAACCATTCTTCTACAGCCCA
Found at i:119569 original size:19 final size:19
Alignment explanation
Indices: 119545--119612 Score: 118
Period size: 19 Copynumber: 3.6 Consensus size: 19
119535 ACCAGCGACT
119545 GGGCCCGCGCACAGTGATC
1 GGGCCCGCGCACAGTGATC
119564 GGGCCCGCGCACAGTGATC
1 GGGCCCGCGCACAGTGATC
*
119583 GGGCCCGCGCACAGGGATC
1 GGGCCCGCGCACAGTGATC
*
119602 GGGCCCACGCA
1 GGGCCCGCGCA
119613 GTAGCGAACG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 47 1.00
ACGTcount: A:0.16, C:0.38, G:0.38, T:0.07
Consensus pattern (19 bp):
GGGCCCGCGCACAGTGATC
Left flanking sequence: Indices 119045 -- 119544
AGATATCACATGGTCTGCCACGGCTTCTGCCACCCCCTCGAACCGGGGGAACAGGTAGATTAAGG
GCACCTGTGTTGTCATACGAATCGGCATTTTTTTTTGCTACGCACGAATTTTGATAAGGTGGGGA
GGCGTGGTTCGCGGCAGCACGGGACGGCCACCACGCTGCGGGCGCGGGGAGGGGTGGGCAGCGAC
GGGTGGCGGTGGTGGCAACCCAGTCGTGGGGGGCGGGAGCCAAAACACGCGTGTGCAAGCGAGCC
AGCCGCCCGTATTGTGTCGGACCCCTCCGCGCGATCCGGATCCACAAAACCCCTCGATCACCCGC
CCACCCACTCTACGAGTAGCACCGGACAACTGGCCAGCCGTTGCGTGACACGGGTGGCGCTACGA
AGGTTGGCGAGAGTGGTTGCATAGACACCCCTGGCGCTGGCGTGTTGCAACCGTGGTGCCAGCGC
GAATGAGTCATGGTGGTGACTTTCGCAGTAGGCTCACCAGCGACT
Right flanking sequence: Indices 119613 -- 120112
GTAGCGAACGCGGTGGGGCGAATCTACACTGACGGGCCCACTGTCAACTCTGCCGGCGAACCACG
CCATTTTTGTGTCAGTGGCTGCAGCGGCGGCGCCATTTGCCAGCACCTCGTCGCCCCGATTGCGA
GGTGGTAGCCCGACCCTGACGACGCGGGCGGTTGTTCGTATTGGCCGCTTTTGGCCGCCTGGTTG
TCGTGCACCGTCCAACCACCTCGTCCTCGACTCGATCAGAAGGGATATGCAAGATAGCGGGGGGA
AGAGACAATATTTTTTATCGGGATCAACAATAGCTTATACTCGAATCGGGAGCAGAGCATCGCTG
GCGGCGGTGGTGCGTAGGGGTCGAGCAGCCCAAGCCCAACAAACGGGCCAACGGGCCAAACTGGC
GCCACCGGTGGGCCCAACCACTAACGACAACGGGACGTAGACCACCGTGGCACTACGAGCTACAC
CACCCTGGCTGGCACCCCACGCGGGCCTATTGTCCACATTCCCAC
Found at i:121091 original size:45 final size:46
Alignment explanation
Indices: 121021--121107 Score: 140
Period size: 45 Copynumber: 1.9 Consensus size: 46
121011 GAAGTTTGAG
*
121021 CCGTGGCATAGGCTCATATTTAGCCGTGGCATAGGTACATTTTTAT
1 CCGTGGCACAGGCTCATATTTAGCCGTGGCATAGGTACATTTTTAT
* *
121067 CCGTGGCACAGGTTCAT-TTTAGCCGTGGCATAGGTTCATTT
1 CCGTGGCACAGGCTCATATTTAGCCGTGGCATAGGTACATTT
121108 GTAGGCTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
45 23 0.61
46 15 0.39
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (46 bp):
CCGTGGCACAGGCTCATATTTAGCCGTGGCATAGGTACATTTTTAT
Left flanking sequence: Indices 120521 -- 121020
AGCGGAAGCGACTGTCGCCGTTGCCTGATCCCACCATCAGCTTTGACGAGACGCGGCGGCGGCCC
GGCGACATGCCGGATTTCGACGACGAGTACGAGATCAAGAAGGGGCTCCGGGTCCAGCCGCCGCC
GGTGGGGGGATTGCCGTCCATCGGCTCGCAGGACTTGGATCCCGTGCACCCGCAGTTTACCCCGT
ACTTGGGTCCCAACGCGGGGGGACCGGTGATAGGCGACGGCGGGATGGTCCCGCTGAAGGACCAC
CCGTTGTTCCGCGGCGGGGGGAGACAGGCGGGCCGCCCGGGTTTGCCACCGGGCGCCCGCTACGA
CGAACCGTTTGGGGGCGACAACCTCGACGGGTTCGGGGGCAACTTTGGCGGAAACTTTGGCGGCG
GGCCCCCCAATTTTATGTGATTAATACTACAGGCATGGCGGTGAACGAGTTGGTGTGGGTAGGCA
CCTATTGTAGAAGCACGGTTTCAGATTACGTTTCAGAAGTTTGAG
Right flanking sequence: Indices 121108 -- 121607
GTAGGCTCATTTCGGTGGTGTTTTTGGGTCGTAGGCTTATTTAGCCGTGGCTCATTAGCCATGGC
TCATTTCAGGGTATTCAGGGAGGCTCGTTCCAGCCCGTTCCAGCTCGCACAATAGAAACGTTAGA
CACAGCCCTAGGCCGTTTAACGCTCGCTTGACGTATTGCCGCTTTCGATAAGCCACGTTCCCCTG
CTTTGTACCCCCACGGTGATCTCATGACACGTCCTCGAGGGCGACGCGTGCATAGCCACCTCCAG
GTTTCTCCTTCCCACTATCGCAATGGCAACGCCGTTGTGCCTAATCGGGCAGTTTTTGTCGATGT
GCGCACTGCACACAGTCCAAAAGCGATGCGCCGTGCTGTCGGCAATCGCCTCGGTGTTCTAAGGG
ATCTAGAGATAATGACTACCGAAGGAAAGAAACGTCAGAGGCTTTGCTGGGCGCTGATCGCAGCG
CTATCGCCGCGCCAGTGGGTGGGGGGTGCCCCACCCTGTCGTTGC
Found at i:121092 original size:22 final size:22
Alignment explanation
Indices: 121019--121107 Score: 124
Period size: 23 Copynumber: 4.0 Consensus size: 22
121009 CAGAAGTTTG
*
121019 AGCCGTGGCATAGGCTCATATTT
1 AGCCGTGGCATAGGTTCAT-TTT
*
121042 AGCCGTGGCATAGGTACATTTTT
1 AGCCGTGGCATAGGTTCA-TTTT
* *
121065 ATCCGTGGCACAGGTTCATTTT
1 AGCCGTGGCATAGGTTCATTTT
121087 AGCCGTGGCATAGGTTCATTT
1 AGCCGTGGCATAGGTTCATTT
121108 GTAGGCTCAT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
22 23 0.40
23 34 0.59
24 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (22 bp):
AGCCGTGGCATAGGTTCATTTT
Left flanking sequence: Indices 120519 -- 121018
CGAGCGGAAGCGACTGTCGCCGTTGCCTGATCCCACCATCAGCTTTGACGAGACGCGGCGGCGGC
CCGGCGACATGCCGGATTTCGACGACGAGTACGAGATCAAGAAGGGGCTCCGGGTCCAGCCGCCG
CCGGTGGGGGGATTGCCGTCCATCGGCTCGCAGGACTTGGATCCCGTGCACCCGCAGTTTACCCC
GTACTTGGGTCCCAACGCGGGGGGACCGGTGATAGGCGACGGCGGGATGGTCCCGCTGAAGGACC
ACCCGTTGTTCCGCGGCGGGGGGAGACAGGCGGGCCGCCCGGGTTTGCCACCGGGCGCCCGCTAC
GACGAACCGTTTGGGGGCGACAACCTCGACGGGTTCGGGGGCAACTTTGGCGGAAACTTTGGCGG
CGGGCCCCCCAATTTTATGTGATTAATACTACAGGCATGGCGGTGAACGAGTTGGTGTGGGTAGG
CACCTATTGTAGAAGCACGGTTTCAGATTACGTTTCAGAAGTTTG
Right flanking sequence: Indices 121108 -- 121607
GTAGGCTCATTTCGGTGGTGTTTTTGGGTCGTAGGCTTATTTAGCCGTGGCTCATTAGCCATGGC
TCATTTCAGGGTATTCAGGGAGGCTCGTTCCAGCCCGTTCCAGCTCGCACAATAGAAACGTTAGA
CACAGCCCTAGGCCGTTTAACGCTCGCTTGACGTATTGCCGCTTTCGATAAGCCACGTTCCCCTG
CTTTGTACCCCCACGGTGATCTCATGACACGTCCTCGAGGGCGACGCGTGCATAGCCACCTCCAG
GTTTCTCCTTCCCACTATCGCAATGGCAACGCCGTTGTGCCTAATCGGGCAGTTTTTGTCGATGT
GCGCACTGCACACAGTCCAAAAGCGATGCGCCGTGCTGTCGGCAATCGCCTCGGTGTTCTAAGGG
ATCTAGAGATAATGACTACCGAAGGAAAGAAACGTCAGAGGCTTTGCTGGGCGCTGATCGCAGCG
CTATCGCCGCGCCAGTGGGTGGGGGGTGCCCCACCCTGTCGTTGC
Found at i:121167 original size:14 final size:14
Alignment explanation
Indices: 121148--121177 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
121138 GTAGGCTTAT
*
121148 TTAGCCGTGGCTCA
1 TTAGCCATGGCTCA
121162 TTAGCCATGGCTCA
1 TTAGCCATGGCTCA
121176 TT
1 TT
121178 TCAGGGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.27, G:0.23, T:0.33
Consensus pattern (14 bp):
TTAGCCATGGCTCA
Left flanking sequence: Indices 120648 -- 121147
GCCGGTGGGGGGATTGCCGTCCATCGGCTCGCAGGACTTGGATCCCGTGCACCCGCAGTTTACCC
CGTACTTGGGTCCCAACGCGGGGGGACCGGTGATAGGCGACGGCGGGATGGTCCCGCTGAAGGAC
CACCCGTTGTTCCGCGGCGGGGGGAGACAGGCGGGCCGCCCGGGTTTGCCACCGGGCGCCCGCTA
CGACGAACCGTTTGGGGGCGACAACCTCGACGGGTTCGGGGGCAACTTTGGCGGAAACTTTGGCG
GCGGGCCCCCCAATTTTATGTGATTAATACTACAGGCATGGCGGTGAACGAGTTGGTGTGGGTAG
GCACCTATTGTAGAAGCACGGTTTCAGATTACGTTTCAGAAGTTTGAGCCGTGGCATAGGCTCAT
ATTTAGCCGTGGCATAGGTACATTTTTATCCGTGGCACAGGTTCATTTTAGCCGTGGCATAGGTT
CATTTGTAGGCTCATTTCGGTGGTGTTTTTGGGTCGTAGGCTTAT
Right flanking sequence: Indices 121178 -- 121677
TCAGGGTATTCAGGGAGGCTCGTTCCAGCCCGTTCCAGCTCGCACAATAGAAACGTTAGACACAG
CCCTAGGCCGTTTAACGCTCGCTTGACGTATTGCCGCTTTCGATAAGCCACGTTCCCCTGCTTTG
TACCCCCACGGTGATCTCATGACACGTCCTCGAGGGCGACGCGTGCATAGCCACCTCCAGGTTTC
TCCTTCCCACTATCGCAATGGCAACGCCGTTGTGCCTAATCGGGCAGTTTTTGTCGATGTGCGCA
CTGCACACAGTCCAAAAGCGATGCGCCGTGCTGTCGGCAATCGCCTCGGTGTTCTAAGGGATCTA
GAGATAATGACTACCGAAGGAAAGAAACGTCAGAGGCTTTGCTGGGCGCTGATCGCAGCGCTATC
GCCGCGCCAGTGGGTGGGGGGTGCCCCACCCTGTCGTTGCCGGTCCCATTGTGACCCCGGCAAGT
GCACCCGAGACAATCGATAAGCCACTCGCCCTAGTGCCAGGTGTT
Found at i:132110 original size:13 final size:13
Alignment explanation
Indices: 132092--132116 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
132082 ACCTCCACAA
132092 CTCGCCTATCCTT
1 CTCGCCTATCCTT
132105 CTCGCCTATCCT
1 CTCGCCTATCCT
132117 GGATCACCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.08, T:0.36
Consensus pattern (13 bp):
CTCGCCTATCCTT
Left flanking sequence: Indices 131592 -- 132091
GATCGAGCGCAGAGAGCAACAGGGTCACACGGGCATCGAACAATTCGTCGAACTGTTCTCGAGTA
ACATCAAGCGCCAGCTGAGCGGGCTCGCTACTGGCAGATTGACCCATGGCTTTGAGTTAGGTGGT
GTGACTTTCACTAGTGAAATTGCTTACATAGAAATGCATGAGTGCGACTAGGGGCGGTTGCTGGA
GATTGGTGAAACTCGGACACCCGGGGAGCCACGGCAATTGGGTGTTTTCTTGAGTGCCCGGGGGT
GTCAGGGGTGCATCCCCGTGAAACACCACCGAACGTGTCTGAAAATTCGACTGTTTCATGAGGAC
GTCTTGGGCACTGATGTGGCCACAATAGTCCAGACCGTGCAAGCTGTCGTAAACGTCTAAAAGAA
ACACGTACAAAGACACCACCGCTATTTGAAACATTCACGCTGTTCCAATGGCGAAACGCTGCGTC
GAGCTGAATCGTGCCAAGTATGCAACTCCCTAACCACCTCCACAA
Right flanking sequence: Indices 132117 -- 132616
GGATCACCCGTGACCGTGTATTACTATTACCTATTATCATGCATTAATTCCACCGGTTGAGAAGC
TGATCGGTCATAAACTGCTTCGCCCGGTTCTCCCAGTTCAACTCCACCCGCTGCACCTTGTTCCA
AAACCCAGATCCCAAAAGAATGCGTTCCTCTTCCTCGTCCTTGGCGTCGCGCTCCTCAACCTTGA
GCTGTTTGAGAAGAGCCTTGTTGAACGCCAACATAATTAAAGTGAAGTAAAAGCGTATGACGGTA
AAAATCACCGTGCCCGCAAGAGTCATGAAAATCTCGTGGGCGGGCGACACCAGCTGGTTGGGGTC
GGCGGCTGTCTTGTGGTCGTCCACCGCCCCGACCCCCGTGGGTGTAGCCATCGCGTACGAGGACG
TCGTCAGCGGCATGTCGTCATCAGACCCCACCAAGTCGCGTCGCACCACTTCCTCGTTGGCAAAC
CAGAAATGGATAAAGTACATGATGTAGAACACCCCGATAACAGTG
Found at i:134240 original size:27 final size:27
Alignment explanation
Indices: 134204--134272 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
134194 GAGTGACGAA
*
134204 GACGACAGTGAC-AGCGACAGCAGTGAC
1 GACGACAGTGACGA-CGAAAGCAGTGAC
* *
134231 GACGAGAGTGACGACGAAAGCAGTGAT
1 GACGACAGTGACGACGAAAGCAGTGAC
134258 GACGACAGTGACGAC
1 GACGACAGTGACGAC
134273 AGTGACGACA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.35, T:0.09
Consensus pattern (27 bp):
GACGACAGTGACGACGAAAGCAGTGAC
Left flanking sequence: Indices 133704 -- 134203
CGAAGTTGCGCGACCACCCGTTTAAGGACGAGGAGGAGTTTCGTCACTACTACCACCAGATGTTG
ATGTACATGCGCCGGATGTACCAGGTGTGTCGTCTCGTGCACGCTGACTTGTCCGAATACAACTC
TATTGTCCACAACGACACATTATACATTATCGATGTCTCCCAGCTGGTGGAGCCCGAGCACCCGA
TGGCGCTCGACTTTTTGCGCATGGACATCAAGAACGTCAACGACTACTTTGCCAAAAAGATCCAC
GTTCACCCGGAAAGGCTCATTTTCAAGTACATTGTGGAAGAGAAACTTGAAGACGACCCCGAAGT
CCTTGTCGACTTTGCAAAGAACATGCCCTACAAAACCACCCATGACGATGAGGTCGAGGATGAGG
TGTTCCGGTCTTTGCACTTCGTTCGTACCCTCAATGCCTTGGAGGAGCGCGATTTCGATAAATTC
CAAGAAGGCAAGGTTGATGCGTTTGACTTGGTCAAGAGTGACGAA
Right flanking sequence: Indices 134273 -- 134772
AGTGACGACAGCGACGACGAAAGCGACGAAGAGGGCGAGGACGGCGAGCGTCACAAACGCGACAA
GGGCCCTCCCAAGTTGAAGAAGTTTGAAGATAAGGATGAAAAGAAGGCCCGCAAGGAAGCTGCCA
AGCAGGCTAAAGCGGAAAAGCGCAAAACTAAGATGAAGAAGCACATCAAGAAGAAAATTGTTGCC
AAGCGCAAAACCAAGTAATCATCCATTGCATATACACGTTTACTCATTGAGCGCCAGCTCACGCA
TACCTATCCTGTCCATGGTGAAGAGGGCAACCCAGTACAAAAGGTATCCCACCCCTCCCGCCACC
AAGATGGCAATCAACAAAATAAACATAAACACCAACAGGTAGAACACCAACTCCAATTGTGAGTA
TTTAGGGAAATCGCGCGGTGGGAGGGTGCTGTCGCGTCGGACCTTGTGTTTGTGCAAGAGACTTT
CAAGGTGCTCTTGGTCTTCAGAGGTCATTCCATCGATGAACTTTT
Found at i:134255 original size:15 final size:14
Alignment explanation
Indices: 134195--134272 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
134185 CTTGGTCAAG
* *
134195 AGTGACGAAGACGAC
1 AGTGACGACGAAG-C
134210 AGTGAC-AGCGACAGC
1 AGTGACGA-CGA-AGC
134225 AGTGACGACG-AG-
1 AGTGACGACGAAGC
134237 AGTGACGACGAAAGC
1 AGTGACGACG-AAGC
*
134252 AGTGATGACG-A-C
1 AGTGACGACGAAGC
134264 AGTGACGAC
1 AGTGACGAC
134273 AGTGACGACA
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
12 19 0.36
13 3 0.06
14 3 0.06
15 26 0.49
16 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.35, T:0.09
Consensus pattern (14 bp):
AGTGACGACGAAGC
Left flanking sequence: Indices 133695 -- 134194
AGCCCAGTCCGAAGTTGCGCGACCACCCGTTTAAGGACGAGGAGGAGTTTCGTCACTACTACCAC
CAGATGTTGATGTACATGCGCCGGATGTACCAGGTGTGTCGTCTCGTGCACGCTGACTTGTCCGA
ATACAACTCTATTGTCCACAACGACACATTATACATTATCGATGTCTCCCAGCTGGTGGAGCCCG
AGCACCCGATGGCGCTCGACTTTTTGCGCATGGACATCAAGAACGTCAACGACTACTTTGCCAAA
AAGATCCACGTTCACCCGGAAAGGCTCATTTTCAAGTACATTGTGGAAGAGAAACTTGAAGACGA
CCCCGAAGTCCTTGTCGACTTTGCAAAGAACATGCCCTACAAAACCACCCATGACGATGAGGTCG
AGGATGAGGTGTTCCGGTCTTTGCACTTCGTTCGTACCCTCAATGCCTTGGAGGAGCGCGATTTC
GATAAATTCCAAGAAGGCAAGGTTGATGCGTTTGACTTGGTCAAG
Right flanking sequence: Indices 134273 -- 134772
AGTGACGACAGCGACGACGAAAGCGACGAAGAGGGCGAGGACGGCGAGCGTCACAAACGCGACAA
GGGCCCTCCCAAGTTGAAGAAGTTTGAAGATAAGGATGAAAAGAAGGCCCGCAAGGAAGCTGCCA
AGCAGGCTAAAGCGGAAAAGCGCAAAACTAAGATGAAGAAGCACATCAAGAAGAAAATTGTTGCC
AAGCGCAAAACCAAGTAATCATCCATTGCATATACACGTTTACTCATTGAGCGCCAGCTCACGCA
TACCTATCCTGTCCATGGTGAAGAGGGCAACCCAGTACAAAAGGTATCCCACCCCTCCCGCCACC
AAGATGGCAATCAACAAAATAAACATAAACACCAACAGGTAGAACACCAACTCCAATTGTGAGTA
TTTAGGGAAATCGCGCGGTGGGAGGGTGCTGTCGCGTCGGACCTTGTGTTTGTGCAAGAGACTTT
CAAGGTGCTCTTGGTCTTCAGAGGTCATTCCATCGATGAACTTTT
Found at i:134271 original size:9 final size:9
Alignment explanation
Indices: 134257--134290 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
134247 AAAGCAGTGA
134257 TGACGACAG
1 TGACGACAG
134266 TGACGACAG
1 TGACGACAG
134275 TGACGACAG
1 TGACGACAG
*
134284 CGACGAC
1 TGACGAC
134291 GAAAGCGACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.32, T:0.09
Consensus pattern (9 bp):
TGACGACAG
Left flanking sequence: Indices 133757 -- 134256
CACCAGATGTTGATGTACATGCGCCGGATGTACCAGGTGTGTCGTCTCGTGCACGCTGACTTGTC
CGAATACAACTCTATTGTCCACAACGACACATTATACATTATCGATGTCTCCCAGCTGGTGGAGC
CCGAGCACCCGATGGCGCTCGACTTTTTGCGCATGGACATCAAGAACGTCAACGACTACTTTGCC
AAAAAGATCCACGTTCACCCGGAAAGGCTCATTTTCAAGTACATTGTGGAAGAGAAACTTGAAGA
CGACCCCGAAGTCCTTGTCGACTTTGCAAAGAACATGCCCTACAAAACCACCCATGACGATGAGG
TCGAGGATGAGGTGTTCCGGTCTTTGCACTTCGTTCGTACCCTCAATGCCTTGGAGGAGCGCGAT
TTCGATAAATTCCAAGAAGGCAAGGTTGATGCGTTTGACTTGGTCAAGAGTGACGAAGACGACAG
TGACAGCGACAGCAGTGACGACGAGAGTGACGACGAAAGCAGTGA
Right flanking sequence: Indices 134291 -- 134790
GAAAGCGACGAAGAGGGCGAGGACGGCGAGCGTCACAAACGCGACAAGGGCCCTCCCAAGTTGAA
GAAGTTTGAAGATAAGGATGAAAAGAAGGCCCGCAAGGAAGCTGCCAAGCAGGCTAAAGCGGAAA
AGCGCAAAACTAAGATGAAGAAGCACATCAAGAAGAAAATTGTTGCCAAGCGCAAAACCAAGTAA
TCATCCATTGCATATACACGTTTACTCATTGAGCGCCAGCTCACGCATACCTATCCTGTCCATGG
TGAAGAGGGCAACCCAGTACAAAAGGTATCCCACCCCTCCCGCCACCAAGATGGCAATCAACAAA
ATAAACATAAACACCAACAGGTAGAACACCAACTCCAATTGTGAGTATTTAGGGAAATCGCGCGG
TGGGAGGGTGCTGTCGCGTCGGACCTTGTGTTTGTGCAAGAGACTTTCAAGGTGCTCTTGGTCTT
CAGAGGTCATTCCATCGATGAACTTTTCAAAATCGTTAGGGTGCA
Found at i:136319 original size:17 final size:17
Alignment explanation
Indices: 136297--136330 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
136287 GCAAGAAACA
136297 AACCAA-GTTGATAGTCG
1 AACCAATGTTG-TAGTCG
136314 AACCAATGTTGTAGTCG
1 AACCAATGTTGTAGTCG
136331 TTCGTAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (17 bp):
AACCAATGTTGTAGTCG
Left flanking sequence: Indices 135797 -- 136296
TCACGCAAAATTTTGTTCACTAAGATGCGCTCTTGACGCTCGGTGTACCAGCCCTTCGGTCTGAA
CCACGTCTTGGATGCAACCACCAGTGGTACCATTTGGAAGAACGCCCAGATGCCAATCAACAAAG
TGATGAGTCCTTCGATGATGAACAACCATTGCCAACCATAACCTATGAGACTAGTCTTAATTTCC
AAAAGCCCAAGAGACAACAACAGCGACACCACCAGGGTGAACGGGATCAGAATGTAGAAAAAGCC
CATACGCATAGGAAGCTCAGGTCCAGTATAGAAGTATGACATCCACAAACACACATCAGCAATGA
ACCCACCTTGCCAGGCACCCAACAAGCCACGCGTGATGAAGAACCCAGCCTTACCCGTCAACGAC
GCCTGACAGATAGACACAATACTCCATGCAACCATCTGAATGGGGATCCAAATCTCTGGACCCAA
CTTTTTCGAGATCAACTGCAGCGGAAGCTCAGCCAGCAAGAAACA
Right flanking sequence: Indices 136331 -- 136830
TTCGTAGTCAAGTTGAGATCGTCCAAGAAGTCATCAGCAAGCGCCTGCTTGAGATTGTACCGATC
CAAATTGAGGGCAGTGAAGCAGATGAAAGTAAACAAGCACACATTGATGTCATTGATCCAGGTGA
TCTTGCGCTCCTCTTGAGGTGTCCAAGTGAGTTCAGGGTCCAAGAGATGCCGACACTCATAGTCG
TTGTCTTCGTACAACTTGGTGTAGTACTTGAGCTTCAGTGGGTCCTGGAAGACGTGTGTGTCCTC
CGAGGAGGTAGACTCGAGGTCAACCACGGACTCTTCAAATTGCTGCTTCTTGTCGTCGCTCATAG
CCTCCTTACGAGGGAGAAGAGGCTCTTTTATGGGGTCGACCATACTGAATTTGCCTTTTCAACAC
AATCATGATTGCGTTTACGCCATTTCGTAGGTGTGGCCAAAGTGATCTCAAACTGTGGTGGTTGC
AAAAATAATAACAATAGCGCAGGAGATCGTTGCAAGGTAACAGGG
Found at i:145660 original size:16 final size:16
Alignment explanation
Indices: 145639--145680 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
145629 CACCCCCGAG
*
145639 CCACCCGCCGCGGCCA
1 CCACCCGCCACGGCCA
* *
145655 CCACCCGCCACTGCTA
1 CCACCCGCCACGGCCA
145671 CCACCCGCCA
1 CCACCCGCCA
145681 ACCAGCCCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.17, C:0.62, G:0.17, T:0.05
Consensus pattern (16 bp):
CCACCCGCCACGGCCA
Left flanking sequence: Indices 145139 -- 145638
TCGGGTGGCGATTCGAGGCGGCGCGCGGTAGAAACGGGTGCTAGGCCCACATGATTAGCGTGTGG
GTGCATGGCCGTGATTGACAGGGCACCAGGCCCCCCGAGCACTCCACTCTGCGGCAGGCTGGTGG
AAGCGAGCGGCCACCACCACCGAACCACGAGCGAACTCTACAAAGCCTCCACGCAGAGCCATGGT
CCCACGCCGCGAGGCGCGCGGCAACGCACTCCGGCGAATCCGTGTCCCCGTGGCCGTCTCGGGCC
CACTTTGCCCCTTTCGCACCGTCCACCTCTCCTACAGACTACTGAGGCTAGTGCGAACGCGTCTG
CTAAATTTTAGTAAGATCTTAGTCGCGGCTACAAAAACACCGCCGTCCCACACACCACCACCACC
TCTCTTATCTCTGGCCTCTGCAGCCCGGGCGCCCTCGTGCTATCTGCCCCCATGGCGTAACATCG
TCGATCCCGCGCCGCACCAAGTGCGCGGTGGGGATCACCCCCGAG
Right flanking sequence: Indices 145681 -- 146180
ACCAGCCCACCAACCACCCGACCACCACCACCCTCCTCTCCTCCCTCCACCTCCTCCACCCACGC
GTGGCCCCCACGTGACGATTTTTTCTCCTCTCGGCACAAACGCGCTTGAGGCCACCTCGACTTTT
TTCGGTAACCAACACTCGCATTTTTTAATTAACAACAACTGTCGAGGCTAGGGAGACGATGCTGG
TTTACACTAGTGACATCAAGCACCACCGTCGCGCCCCGCCTCCGCCGGGGCTGGGCGACCACCAG
GTGGCGCCCGGCGTGGGCGGACCCGGCGCAGCGCTGGTGCTGGCAACCAAGCGCCACGCGGGGTG
GGTCCACCTCAAGGACGATGGCATCTTCACGCTGTTCCGGTGGAACAAGCGGTACATGGTGATGA
GCGACAAGACGGTCAACTTCTACCGCCACGACGGCGACATTCTGTCGCAGCAGCCCGACCTCCTG
TTCCCGCTCAACCTCATAGCCACCATCAACTTGAAGCCGCTGACC
Found at i:145704 original size:12 final size:12
Alignment explanation
Indices: 145670--145709 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
145660 CGCCACTGCT
145670 ACCACCCG-CCA
1 ACCACCCGACCA
145681 ACCAGCCC-ACCA
1 ACCA-CCCGACCA
145693 ACCACCCGACC-
1 ACCACCCGACCA
145704 ACCACC
1 ACCACC
145710 ACCCTCCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 13 0.50
12 13 0.50
ACGTcount: A:0.30, C:0.62, G:0.07, T:0.00
Consensus pattern (12 bp):
ACCACCCGACCA
Left flanking sequence: Indices 145170 -- 145669
AAACGGGTGCTAGGCCCACATGATTAGCGTGTGGGTGCATGGCCGTGATTGACAGGGCACCAGGC
CCCCCGAGCACTCCACTCTGCGGCAGGCTGGTGGAAGCGAGCGGCCACCACCACCGAACCACGAG
CGAACTCTACAAAGCCTCCACGCAGAGCCATGGTCCCACGCCGCGAGGCGCGCGGCAACGCACTC
CGGCGAATCCGTGTCCCCGTGGCCGTCTCGGGCCCACTTTGCCCCTTTCGCACCGTCCACCTCTC
CTACAGACTACTGAGGCTAGTGCGAACGCGTCTGCTAAATTTTAGTAAGATCTTAGTCGCGGCTA
CAAAAACACCGCCGTCCCACACACCACCACCACCTCTCTTATCTCTGGCCTCTGCAGCCCGGGCG
CCCTCGTGCTATCTGCCCCCATGGCGTAACATCGTCGATCCCGCGCCGCACCAAGTGCGCGGTGG
GGATCACCCCCGAGCCACCCGCCGCGGCCACCACCCGCCACTGCT
Right flanking sequence: Indices 145710 -- 146209
ACCCTCCTCTCCTCCCTCCACCTCCTCCACCCACGCGTGGCCCCCACGTGACGATTTTTTCTCCT
CTCGGCACAAACGCGCTTGAGGCCACCTCGACTTTTTTCGGTAACCAACACTCGCATTTTTTAAT
TAACAACAACTGTCGAGGCTAGGGAGACGATGCTGGTTTACACTAGTGACATCAAGCACCACCGT
CGCGCCCCGCCTCCGCCGGGGCTGGGCGACCACCAGGTGGCGCCCGGCGTGGGCGGACCCGGCGC
AGCGCTGGTGCTGGCAACCAAGCGCCACGCGGGGTGGGTCCACCTCAAGGACGATGGCATCTTCA
CGCTGTTCCGGTGGAACAAGCGGTACATGGTGATGAGCGACAAGACGGTCAACTTCTACCGCCAC
GACGGCGACATTCTGTCGCAGCAGCCCGACCTCCTGTTCCCGCTCAACCTCATAGCCACCATCAA
CTTGAAGCCGCTGACCGGGTACACCAAGCAGCTGCAGCTGCTAGA
Found at i:157733 original size:6 final size:6
Alignment explanation
Indices: 157722--157748 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
157712 GGACTTGGAA
157722 CGGTCG CGGTCG CGGTCG CGGTCG CGG
1 CGGTCG CGGTCG CGGTCG CGGTCG CGG
157749 CTGCACTCGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.33, G:0.52, T:0.15
Consensus pattern (6 bp):
CGGTCG
Left flanking sequence: Indices 157222 -- 157721
AGTGGTTTGGCGAGCTGAACGTGTCCATCCCCATTTGTGCATTTACCGGGGGCAAGGACCGGTTG
GTGGACGGGTTGCGCTACGCGGCCCACATGAAGAACGGCGAGCCCAACTACCGCGAGGGCGACAA
CTTTTTCCACTACCATTTGGACGACTACACCCATGTAGATGTGGTGTGGGCCCAGAACTTGCCCA
AGCTCGTGGCCGAGCCGTTGCTCAAACAGTTGCGCCAGTGGGAGCTCCGCGACCAGCGGGCACTG
GGCGTGAGACTGCGAGCGCTGCGTACCGAGTCAGAAAAGGTGTTTGACAAGTACAGCGTGCTGAG
CCTGGTGATGGGCCCGTCCCGTGGCCACGAGCGCCGCGAGGACTCGGCCTACGTGGAGGAAAAGC
ACGCCATCAGCCGGCCAGGCACCCGGCTGCGGCTGCGGTCGCTCCACGAGTACATCCCCAGGGAC
GACGACAGCGTGGGCCACCGCCGCCGGCTGCGGCAGGACTTGGAA
Right flanking sequence: Indices 157749 -- 158248
CTGCACTCGCTCCACCTGGCCTACCGGGAAAATGCTCCCAACACCACGGCCAACCATCCACTTCC
GGCTGACGCCCTCGAGATCATGCAGCGTCACGAAAAGGCCCGCAACTACGACGACCCGCGTTTAT
CGGGCTCGATGTTGTATCACGAGGGCTCGCCTGGTGCTGCCTTCTCCGACGACTCCACGCTCAAC
CCGCTGACGCGCGGAGGCTCCACCAACGTGTCACCCAAAAAGCCGGGCGTTCGCTCGGTGTTGAC
TGCTCCCGTAGTTGCTCAGTGAGCACCTAATTCATGACAATACTTTCCATCGGAGATGCACGGTA
ATAGTCATCTCTTCAGGGTACTATGATCACGCATGGTGATCTAGCTCGCCAGTGAGAGCACCAGA
GCACCCAATCTATGCATGGTAATACAATAATCTATATTAATTAACAGTAACAATTTTTTATACGT
CTATGCAATAGTCTATACGCTAGAGCTTGGCAGCATCCATACAGT
Found at i:173787 original size:9 final size:9
Alignment explanation
Indices: 173773--173804 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
173763 AAGGATAAGA
*
173773 AGCCCGAAC
1 AGCCCGAGC
173782 AGCCCGAGC
1 AGCCCGAGC
173791 AGCCCGAGC
1 AGCCCGAGC
173800 AGCCC
1 AGCCC
173805 AAGGAGGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.25, C:0.47, G:0.28, T:0.00
Consensus pattern (9 bp):
AGCCCGAGC
Left flanking sequence: Indices 173273 -- 173772
GTACCTCAACGCGGCAGCCATCGACTTTGAGATCTTCAGCGAGACTCGCCAGGGCGATATCCGGG
CCGAGGTCGCCCAAAAGATCCGCGACATGCGTCGGGCCGAGCTTGAGCGCAACCAGCCGGTGGTG
GCGGCGGCGGGGCCCAGCTGGACCCAGCGGGTTTCCTCGCAGTGGGGCAAGCTCAAGCTGGTGTT
TTCCAAGCCCAAACAGGACGACGACGAGGCTACAACCCTGCGCTACGACTTGTACGAGGCTAAGG
ACGTTTTGGGGTTGTACAAGGTGGCCCAGCCGGTGAAGCCGGTGTCGGAGGACATGCGCGACCCC
GTGCACGCCGGCGGTGTGCTCTGTATCGGACGTGGTGCCTACAAGGAGTACCTCAACGGGGTGCA
CGAGGGGTTGTTGGGCCCGTTGGACAAGCCCCAATGGTTGGTGGAGCAGGAGGCTCAGGAGGCGG
CGGACCGTAAGGCGGCACGGCTCGCCGAGCAGGGTAAGGATAAGA
Right flanking sequence: Indices 173805 -- 174304
AAGGAGGAGTTGCCCGTGTCCGTGTACTCGCCCGTCCAGGTGGCGGCGAAGGCGGAGGAGGCTCC
TCAGGAGGAGGAGGAGGAAGACCTTGTCGACGGACGCAAACCGGTGCAGAAGGCGTTTATCAAAC
CCGAGGACTACGCCAACGCCCCGCTTGCGCCCGAGCTCAACATGAGCGCCATGGTGGCCGACGCC
AACGGGGTGCCCGTGTTGTTCGAGCAGCCAGTTTACGTGATTCCCGTGGCCAACCTCCACGGGTT
CACCAACATGCCGCGCAACATCTACCGGTGGTTCACCAAGCGGTTCCAGGCGGCGGACCTCGCTG
ACCGCACGCTTGTGGTGGTGAACAACCAGCCGCGCCCGTTTGCGTTCCGCGACACTTTGGCTGCG
GGTGAGGAGGAGTTGGACTGGCCCAAGCTGTGGGTGGAGCGTGGCCGTGGCAAGGGCTCGGAGTG
GGTGCAAGACTTGGTCACCGACGAAAGAGTCACTGGCCGCATGCG
Done.