sallet_2.scaffold.fasta.s46.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold64
Parameters: 2 7 7 80 10 50 500
Length:  87313

Tables:   1   2   

This is table  1  of  2  ( 136 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171--289	6	17.8	6	76	19	103	0	0	47	51	1.12
166--287	14	8.8	14	88	8	187	0	0	47	50	1.12
171--284	20	5.6	20	81	12	142	0	0	48	50	1.13
214--305	6	15.8	6	86	6	64	0	0	44	55	0.99
214--305	9	10.6	9	79	6	64	0	0	44	55	0.99
5707--5760	22	2.5	22	88	8	76	25	40	3	29	1.73
6595--6629	12	2.9	12	86	0	52	22	11	31	34	1.90
6717--6757	15	2.5	17	88	11	59	0	46	4	48	1.23
8336--8383	5	9.4	5	81	18	55	0	0	60	39	0.97
10731--10761	12	2.6	12	94	0	53	16	35	35	12	1.87
10772--10867	21	4.6	21	78	7	97	22	47	10	18	1.79
12702--12733	9	3.6	9	95	0	55	18	31	34	15	1.93
12786--12820	18	1.9	18	88	0	52	11	20	40	28	1.87
12830--12871	18	2.3	18	84	8	50	7	23	35	33	1.82
12840--12884	18	2.5	18	88	0	63	2	28	35	33	1.70
13428--13479	21	2.5	21	90	6	79	11	26	50	11	1.73
13421--13470	12	4.4	12	75	14	61	10	24	52	14	1.71
14869--14924	14	4.0	14	88	9	71	14	8	50	26	1.72
15114--15163	15	3.2	15	82	5	64	24	18	42	16	1.89
18675--18713	11	3.5	11	85	0	60	5	15	61	17	1.51
18777--18822	21	2.2	21	88	7	67	26	2	58	13	1.46
19455--19489	9	3.7	9	92	7	52	25	65	8	0	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20082--20148	29	2.3	29	86	0	89	50	0	47	1	1.10
20215--20281	12	5.9	12	83	13	97	14	19	25	40	1.90
20725--20776	13	4.0	13	97	0	95	40	15	28	15	1.88
20783--20822	14	2.9	14	96	0	71	37	7	42	12	1.71
20933--20996	8	8.2	8	74	6	60	12	54	0	32	1.38
20933--20993	23	2.7	23	82	7	70	13	54	0	32	1.39
20955--20998	15	2.9	15	86	6	63	13	56	0	29	1.38
21109--21165	6	9.5	6	80	0	51	35	52	0	12	1.39
21109--21146	15	2.5	15	91	0	67	34	55	0	10	1.34
21098--21165	18	3.6	18	79	11	73	33	54	0	11	1.37
21100--21165	24	2.8	24	88	0	87	34	53	0	12	1.38
21098--21137	9	4.4	9	96	0	71	32	60	0	7	1.25
21098--21143	3	15.3	3	81	0	56	32	58	0	8	1.28
21174--21225	18	2.9	18	78	13	63	0	59	1	38	1.08
22325--22366	9	5.0	9	77	16	54	0	54	2	42	1.13
23091--23146	20	2.8	20	86	8	78	21	16	33	28	1.95
23587--23685	21	4.8	21	77	3	94	39	17	8	35	1.79
23587--23683	42	2.3	42	82	1	115	39	17	8	35	1.80
23722--23763	15	2.8	16	89	7	61	23	42	0	33	1.55
25927--25973	11	4.2	11	94	2	76	19	57	17	6	1.60
26032--26070	19	2.0	21	90	10	64	15	38	12	33	1.85
31284--31370	29	3.0	29	91	0	129	17	3	36	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31347--31421	27	2.7	27	83	4	87	20	8	29	42	1.80
32076--32152	24	3.1	25	85	9	104	14	50	1	33	1.51
32172--32225	19	2.9	19	86	8	76	9	55	0	35	1.32
33869--33907	10	3.8	10	80	6	51	0	0	48	51	1.00
33869--33912	21	2.1	21	91	0	70	0	2	50	47	1.13
33869--33918	21	2.3	20	83	12	64	0	2	50	48	1.12
34882--34916	7	4.7	7	89	10	52	28	68	0	2	1.04
36489--36538	18	2.8	18	96	0	91	26	12	36	26	1.91
40135--40200	19	3.4	19	82	2	87	12	42	10	34	1.77
40135--40200	10	6.8	10	79	6	82	12	42	10	34	1.77
40135--40205	29	2.4	29	86	6	90	12	43	11	32	1.78
41163--41210	9	5.7	9	85	14	75	43	12	10	33	1.77
41165--41210	17	2.8	17	96	3	85	43	13	10	32	1.78
41260--41289	9	3.2	9	90	9	51	13	20	46	20	1.83
41256--41293	10	3.9	10	86	6	60	13	21	47	18	1.82
41476--41525	10	4.9	10	80	11	57	36	32	18	14	1.90
43844--43877	17	2.0	17	100	0	68	17	17	52	11	1.73
43874--43919	24	1.9	24	86	8	67	26	13	26	34	1.92
43898--43959	13	4.8	13	76	7	54	22	17	27	32	1.97
44173--44237	33	2.0	31	85	11	87	23	13	47	15	1.81
44251--44287	13	2.8	13	91	0	65	27	27	16	29	1.97
45539--45611	20	3.7	20	94	0	128	17	34	38	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45820--45861	9	4.6	9	84	3	57	19	14	54	11	1.70
46610--46698	27	3.3	27	87	0	115	10	13	40	35	1.78
46777--46808	12	2.7	12	100	0	64	34	6	40	18	1.76
47391--47480	12	7.5	12	92	0	108	12	21	37	28	1.89
47399--47492	48	2.0	48	86	0	134	9	18	40	31	1.82
47391--47544	36	4.4	36	80	3	134	10	22	36	30	1.88
47391--47511	24	5.0	24	83	4	109	10	21	37	30	1.88
47479--47552	33	2.2	33	92	0	121	8	21	37	32	1.83
48845--48911	16	4.4	16	77	11	68	44	29	8	16	1.78
48980--49042	12	5.2	12	94	0	99	0	44	0	55	0.99
51698--51744	19	2.5	19	89	0	67	8	4	61	25	1.43
52126--52156	9	3.4	9	100	0	62	35	32	9	22	1.87
53372--53414	14	3.1	14	82	0	59	23	6	25	44	1.78
54800--54884	19	4.5	19	82	2	55	44	8	29	17	1.78
54819--54885	19	3.5	19	87	0	89	44	8	28	17	1.79
55161--55194	17	2.0	17	88	0	50	29	47	0	23	1.52
57492--57529	12	3.0	12	85	14	58	7	15	36	39	1.77
57484--57534	14	3.8	14	84	10	70	13	13	37	35	1.85
59896--59947	17	3.0	18	80	8	72	32	15	15	36	1.89
60603--60634	14	2.3	14	94	0	55	18	31	25	25	1.98
60945--60981	11	3.3	11	88	3	56	24	72	0	2	0.97
61765--61796	12	2.7	12	95	0	55	3	71	6	18	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62255--62329	21	3.6	21	80	7	89	21	10	60	8	1.55
62323--62392	21	3.3	20	66	15	52	18	24	57	0	1.41
62309--62391	42	2.0	42	85	4	114	18	21	57	2	1.51
62445--62512	21	3.2	21	83	8	93	27	54	13	4	1.58
62427--62512	42	2.0	42	82	4	102	27	52	16	3	1.60
62605--62629	12	2.1	12	100	0	50	16	24	60	0	1.36
62584--62648	33	2.0	33	87	0	94	18	29	50	1	1.56
62644--62674	12	2.6	12	94	0	53	22	38	29	9	1.86
63124--63233	48	2.4	48	86	4	145	30	18	49	1	1.58
63153--63233	24	3.4	24	84	0	108	34	17	45	2	1.62
63173--63213	12	3.3	13	80	13	59	41	12	46	0	1.41
63679--63713	18	1.9	18	88	0	52	0	40	45	14	1.45
64029--64071	10	4.3	10	93	0	77	30	6	51	11	1.65
64496--64522	13	2.1	13	100	0	54	33	22	37	7	1.82
72484--72563	39	2.1	39	90	4	126	31	8	42	17	1.80
72748--72810	30	2.2	28	86	10	92	20	7	41	30	1.81
72757--72885	30	4.3	30	87	0	141	23	6	42	27	1.79
72957--72993	18	2.1	18	94	0	65	2	37	43	16	1.62
73470--73494	11	2.3	11	100	0	50	32	0	20	48	1.50
75525--75590	13	5.0	14	90	3	86	27	40	15	16	1.88
75532--75590	26	2.3	27	91	5	95	27	40	15	16	1.89
76685--76773	42	2.1	42	93	0	151	28	16	46	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77041--77100	21	2.9	21	89	0	93	53	21	16	8	1.69
77031--77108	21	3.7	21	82	0	84	50	24	17	7	1.73
77267--77316	24	2.1	24	88	0	73	38	30	20	12	1.88
77747--77817	12	5.9	12	79	0	79	39	19	19	21	1.93
77747--77805	24	2.5	24	100	0	118	38	18	20	22	1.93
79015--79151	12	11.4	12	80	8	154	9	24	32	32	1.88
79932--79977	21	2.2	21	92	0	74	36	15	34	13	1.86
80000--80030	12	2.6	12	94	0	53	41	19	29	9	1.83
80021--80096	33	2.3	33	88	4	109	38	27	26	7	1.84
80066--80116	24	2.2	24	92	3	86	45	27	21	5	1.75

Tables:   1   2