Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold64
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 87313
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
File 1 of 2
Found at i:182 original size:6 final size:6
Alignment explanation
Indices: 171--289 Score: 103
Period size: 6 Copynumber: 17.8 Consensus size: 6
161 TCTTATTGGT
* *
171 GTGTTG GTGTTGG AGTGTTG GTGTTG GTGTGTT GTTTTCGG TGTGTTG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGT-TG GTGTT--G -GTGTTG
219 GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTGG TGTGTTG
1 GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTT-G -GTGTTG
*
273 GTGTTG GTGTTG TTGTT
1 GTGTTG GTGTTG GTGTT
290 TTTGTTGTTG
Statistics
Matches: 96, Mismatches: 5, Indels: 24
0.77 0.04 0.19
Matches are distributed among these distances:
6 59 0.61
7 13 0.14
8 20 0.21
9 4 0.04
ACGTcount: A:0.01, C:0.01, G:0.47, T:0.51
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 1 -- 170
ATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGAA
CCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCCTGGGCTTCGCTTCCTTTGCCATATGGGAGAC
GAGATTAGAAGTACTAGCAGTACCACCCCCTCTTATTGGT
Right flanking sequence: Indices 290 -- 789
TTTGTTGTTGTTGTTGCTGGAGGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTT
GGTGGTGCCAATGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCC
TGTTGGTGGTGCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGC
CTTCGGGGGAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTATAT
AGGATATATAAGATATATACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAGTC
ACGTGACACATATCACATGGCATCACTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGT
TAACATAACGTGTTATGTAATTCTCGTAAAGTCTTTAGCAAATGTTGAATGGTCGTCGTATAGCT
CGTCGTATAGTGGGGGTGGTTGTTTGTTAGAGGGGGCCGGTTTAC
Found at i:188 original size:14 final size:14
Alignment explanation
Indices: 166--287 Score: 187
Period size: 14 Copynumber: 8.8 Consensus size: 14
156 CCCCCTCTTA
166 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
*
180 TTGGAGTGTTGGTG
1 TTGGTGTGTTGGTG
*
194 TTGGTGTGTT-GTT
1 TTGGTGTGTTGGTG
207 TTCGGTGTGTTGGTG
1 TT-GGTGTGTTGGTG
222 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
236 TT-G-GTGTTGGTG
1 TTGGTGTGTTGGTG
248 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
262 TTGGTGTGTTGGTG
1 TTGGTGTGTTGGTG
276 TTGGTGTTGTTG
1 TTGGTG-TGTTG
288 TTTTTGTTGT
Statistics
Matches: 99, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.11
13 6 0.06
14 73 0.74
15 9 0.09
ACGTcount: A:0.01, C:0.01, G:0.48, T:0.51
Consensus pattern (14 bp):
TTGGTGTGTTGGTG
Left flanking sequence: Indices 1 -- 165
ATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGAA
CCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCCTGGGCTTCGCTTCCTTTGCCATATGGGAGAC
GAGATTAGAAGTACTAGCAGTACCACCCCCTCTTA
Right flanking sequence: Indices 288 -- 787
TTTTTGTTGTTGTTGTTGCTGGAGGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTG
TTGGTGGTGCCAATGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCC
CCTGTTGGTGGTGCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGC
GCCTTCGGGGGAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTAT
ATAGGATATATAAGATATATACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAG
TCACGTGACACATATCACATGGCATCACTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCG
GTTAACATAACGTGTTATGTAATTCTCGTAAAGTCTTTAGCAAATGTTGAATGGTCGTCGTATAG
CTCGTCGTATAGTGGGGGTGGTTGTTTGTTAGAGGGGGCCGGTTT
Found at i:196 original size:20 final size:20
Alignment explanation
Indices: 171--284 Score: 142
Period size: 20 Copynumber: 5.6 Consensus size: 20
161 TCTTATTGGT
*
171 GTGTTGGTGTTGGAGTGTTG
1 GTGTTGGTGTTGGTGTGTTG
* *
191 GTGTTGGTG-TGTTGTTTTCGG
1 GTGTTGGTGTTGGTGTGTT--G
212 TGTGTTGGTGTTGGTGTGTTG
1 -GTGTTGGTGTTGGTGTGTTG
*
233 GTGTTGGTGTTGGTGT-TGG
1 GTGTTGGTGTTGGTGTGTTG
252 TGTGTTGGTGTTGGTGTGTTG
1 -GTGTTGGTGTTGGTGTGTTG
273 GTGTTGGTGTTG
1 GTGTTGGTGTTG
285 TTGTTTTTGT
Statistics
Matches: 81, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
19 8 0.10
20 53 0.65
21 4 0.05
22 9 0.11
23 7 0.09
ACGTcount: A:0.01, C:0.01, G:0.48, T:0.50
Consensus pattern (20 bp):
GTGTTGGTGTTGGTGTGTTG
Left flanking sequence: Indices 1 -- 170
ATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGAA
CCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCCTGGGCTTCGCTTCCTTTGCCATATGGGAGAC
GAGATTAGAAGTACTAGCAGTACCACCCCCTCTTATTGGT
Right flanking sequence: Indices 285 -- 784
TTGTTTTTGTTGTTGTTGTTGCTGGAGGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCC
CTGTTGGTGGTGCCAATGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTT
CCCCCTGTTGGTGGTGCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGG
TGCGCCTTCGGGGGAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAG
TATATAGGATATATAAGATATATACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTA
AAGTCACGTGACACATATCACATGGCATCACTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAA
GCGGTTAACATAACGTGTTATGTAATTCTCGTAAAGTCTTTAGCAAATGTTGAATGGTCGTCGTA
TAGCTCGTCGTATAGTGGGGGTGGTTGTTTGTTAGAGGGGGCCGG
Found at i:294 original size:6 final size:6
Alignment explanation
Indices: 214--305 Score: 64
Period size: 6 Copynumber: 15.8 Consensus size: 6
204 GTTTTCGGTG
* * * * * * *
214 TGTTGG TGTTGG TG-TGT TGGTGT TGGTGT TGGTGT TGGTG- TGTTGG
1 TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT
* * * *
260 TGTTGG TG-TGT TGGTGT TGGTGT TGTTGT TTTTGT TGTTGT TGTTG
1 TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTGT TGTTG
306 CTGGAGGTTG
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
5 12 0.16
6 65 0.84
ACGTcount: A:0.00, C:0.00, G:0.45, T:0.55
Consensus pattern (6 bp):
TGTTGT
Left flanking sequence: Indices 1 -- 213
ATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGAA
CCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCCTGGGCTTCGCTTCCTTTGCCATATGGGAGAC
GAGATTAGAAGTACTAGCAGTACCACCCCCTCTTATTGGTGTGTTGGTGTTGGAGTGTTGGTGTT
GGTGTGTTGTTTTCGGTG
Right flanking sequence: Indices 306 -- 805
CTGGAGGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGCCAATGGTA
TCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGGAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTATATAGGATATATAAGATAT
ATACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGACACATATCAC
ATGGCATCACTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTAACATAACGTGTTAT
GTAATTCTCGTAAAGTCTTTAGCAAATGTTGAATGGTCGTCGTATAGCTCGTCGTATAGTGGGGG
TGGTTGTTTGTTAGAGGGGGCCGGTTTACTTTTAAGTCACGTGAC
Found at i:294 original size:9 final size:9
Alignment explanation
Indices: 214--305 Score: 64
Period size: 9 Copynumber: 10.6 Consensus size: 9
204 GTTTTCGGTG
*
214 TGTTGGTGT
1 TGTTGTTGT
*
223 TGGTG-TGT
1 TGTTGTTGT
* *
231 TGGTGTTGG
1 TGTTGTTGT
*
240 TGTTGGTGT
1 TGTTGTTGT
*
249 TGGTG-TGT
1 TGTTGTTGT
* *
257 TGGTGTTGG
1 TGTTGTTGT
*
266 TG-TGTTGG
1 TGTTGTTGT
*
274 TGTTGGTGT
1 TGTTGTTGT
*
283 TGTTGTTTT
1 TGTTGTTGT
292 TGTTGTTGT
1 TGTTGTTGT
301 TGTTG
1 TGTTG
306 CTGGAGGTTG
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
8 24 0.35
9 44 0.65
ACGTcount: A:0.00, C:0.00, G:0.45, T:0.55
Consensus pattern (9 bp):
TGTTGTTGT
Left flanking sequence: Indices 1 -- 213
ATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGAA
CCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCCTGGGCTTCGCTTCCTTTGCCATATGGGAGAC
GAGATTAGAAGTACTAGCAGTACCACCCCCTCTTATTGGTGTGTTGGTGTTGGAGTGTTGGTGTT
GGTGTGTTGTTTTCGGTG
Right flanking sequence: Indices 306 -- 805
CTGGAGGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGCCAATGGTA
TCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGGAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTATATAGGATATATAAGATAT
ATACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGACACATATCAC
ATGGCATCACTGAGCCGCACCAGTATATTAGGTCAGCTCGTAAAGCGGTTAACATAACGTGTTAT
GTAATTCTCGTAAAGTCTTTAGCAAATGTTGAATGGTCGTCGTATAGCTCGTCGTATAGTGGGGG
TGGTTGTTTGTTAGAGGGGGCCGGTTTACTTTTAAGTCACGTGAC
Found at i:5731 original size:21 final size:22
Alignment explanation
Indices: 5707--5760 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
5697 TGACATTAAG
5707 GTACCACCTA-CC-TTTCCTACA
1 GTACCACCTATCCATTT-CTACA
5728 GTACCACCTATCCATTTCTACA
1 GTACCACCTATCCATTTCTACA
*
5750 CTACCACCTAT
1 GTACCACCTAT
5761 TTTCTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 10 0.33
22 17 0.57
23 3 0.10
ACGTcount: A:0.26, C:0.41, G:0.04, T:0.30
Consensus pattern (22 bp):
GTACCACCTATCCATTTCTACA
Left flanking sequence: Indices 5207 -- 5706
GTCTGGCGCGGCGCTGGTGTCTGTAGCGAGTTTATACTCGGATTGGTGTAAAGGGCCCCAAACTG
TGGGCAGACCGTAGTGAGGACAGAGACCACCAGGCATTGGCGCGAAAATGAATCAGAAATCGCCC
AAACTCGGGCGTTTCACGCTTGCGTGGGTGGATTTGGCGGTCTCGAGGTGAAGGCCAAGATGTGT
ACTCGTAAAAATTCCACGGGCATAAAAGCGCGTCATAGGGTTGCAGGCTGTAAGGGGAAGAAGCA
CCAAGAATGGCTTAGCACGAACAGTAAGTGATACCGTACTGGTGCAACAATGATGTTAGGCTCAT
ATTTTACAGTATTTTGTGATTGCGTTAGGTAATGCTAGGTCAGAAAGAGAAGGAAGGTATCGATC
GGGTTAATCCTAGGATCAGTAAGAAAACCACTCTACCACCAGCTTGCTCCCCATATTCCGCGTGG
AATGTTACCTTTGGCAACACAGATTCCACAGTATTTGACATTAAG
Right flanking sequence: Indices 5761 -- 6260
TTTCTTTTATCATTCATTTAAACACTTACACACAATATAACCAATTATTTATTCGATTTATATCC
ACAGACCCCATAATTCAGCCTTTAGGCTATTTCAGACACATACCAGGCCCATCCAGCCTTCGTCT
CCTCATTAAAGTCATTAATTCATGCTCTATTAACTGCCTATGCCTTTTCTGCCACCGCCAACGGC
GCCGTGAGCAGCGATCCCTGGCGCACAATCGTCTCCACACGGTCCTTGAGCACCTTGGACGCGCA
GGTGACCTCCCACGTGTGCAAATCGATCGACGCCGCGAGCTTGCCCATCTTGATATCCGCGGTGT
GGTCCCCCACGGTGAGGGCGTCGCCAAACTGCGACCGCAAGAGCGCGGCGATGCGCTCGAGCCGC
TCGCCCGAGCCATGCGAATGGCCACACGGCTGCGACAGCTTCTTGACCGACGCCGGCAGCGAGTC
GATCAGGTAGAGGATCGCCACCACCGAGTCCGCGAGCGAGTCGGC
Found at i:6610 original size:12 final size:12
Alignment explanation
Indices: 6595--6629 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
6585 GGTGTCGCTC
*
6595 TCGGACTTAGAG
1 TCGGATTTAGAG
*
6607 TCGGATTTTGAG
1 TCGGATTTAGAG
6619 TCGGATTTAGA
1 TCGGATTTAGA
6630 CTCCTTAGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.23, C:0.11, G:0.31, T:0.34
Consensus pattern (12 bp):
TCGGATTTAGAG
Left flanking sequence: Indices 6095 -- 6594
CGGTGAGGGCGTCGCCAAACTGCGACCGCAAGAGCGCGGCGATGCGCTCGAGCCGCTCGCCCGAG
CCATGCGAATGGCCACACGGCTGCGACAGCTTCTTGACCGACGCCGGCAGCGAGTCGATCAGGTA
GAGGATCGCCACCACCGAGTCCGCGAGCGAGTCGGCCATGAGGTTGTCGTTGATCCACTCCACCA
CCACGAGAAGCGCGCCCTTGGTCTTGTCGACCAGCACCACGATCATGTCCATGATGACACACTCC
CAGGCGTCGTCGGTGGCGGTGACCACGTTGACGTAGCCAAACATTTGTTCCAAGTGCCACTGGAC
CAACGGGACGTCGGCGTTGATCTTGAGGTTGATTTTCAGCTTGACGATGGACGTCAGGAGGTTGG
TGTACTCGTGGAGGTCCTGGAGCTGGAGGAGGTTGAGGTCGAAGTCCTTGGCCACGAGCACGCCG
CGCACGAGTTGGTTCAGCGCGGTGGTGACGTAGTCGGTGTCGCTC
Right flanking sequence: Indices 6630 -- 7129
CTCCTTAGACTCATCCTTAGAATCCTCAGACTCCTTCGGTTTCTCATCCTTAGCCTCAGCCTTAG
ACTCCTCCAGTTTCTCATCCTTCTCCTTCTCCTTCTGGTCCTCCTTCTCTTCTTCCTCCTTCTTC
ACTCCGGGCTCTTGCTTCACCGTGGCCTCTTCCACCTTGGCCTCTCCCTCAGCCTCCTCGTCCAC
GTCCATCTCCTCCTGCTTGATCTCCACCACCTTGGCCTCCTCAAACTGCGACCGCAACCCCACCA
ACTGCTCCTCGGCCAACCCGCCCAACACCTTGGCCGTCTTGTTGCCCTTGATGCCAATCAACACC
TCCTCGCAGTTCTTGGGGTTGAACACCTTCACCTCCTTGTCGGACCCCTTGCGGGCCGCGTACTT
CGACAAAAGCGCCAGCTTGAGCCGGCCCATGGGCACCAGGTCCCCGTGCACCAAGATGATCTTCA
GCGGCTGCACCTTGTCGATGAACTCGGTGTTCTCCTGGAAGTCGA
Found at i:6751 original size:15 final size:17
Alignment explanation
Indices: 6717--6757 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
6707 TCTCATCCTT
6717 CTCCTTCTCCTTCTGGTC
1 CTCCTTCTCCTTCT-GTC
6735 CTCCTTCT-CTTCT-TC
1 CTCCTTCTCCTTCTGTC
6750 CTCCTTCT
1 CTCCTTCT
6758 TCACTCCGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.43
17 5 0.22
18 8 0.35
ACGTcount: A:0.00, C:0.46, G:0.05, T:0.49
Consensus pattern (17 bp):
CTCCTTCTCCTTCTGTC
Left flanking sequence: Indices 6217 -- 6716
ATCAGGTAGAGGATCGCCACCACCGAGTCCGCGAGCGAGTCGGCCATGAGGTTGTCGTTGATCCA
CTCCACCACCACGAGAAGCGCGCCCTTGGTCTTGTCGACCAGCACCACGATCATGTCCATGATGA
CACACTCCCAGGCGTCGTCGGTGGCGGTGACCACGTTGACGTAGCCAAACATTTGTTCCAAGTGC
CACTGGACCAACGGGACGTCGGCGTTGATCTTGAGGTTGATTTTCAGCTTGACGATGGACGTCAG
GAGGTTGGTGTACTCGTGGAGGTCCTGGAGCTGGAGGAGGTTGAGGTCGAAGTCCTTGGCCACGA
GCACGCCGCGCACGAGTTGGTTCAGCGCGGTGGTGACGTAGTCGGTGTCGCTCTCGGACTTAGAG
TCGGATTTTGAGTCGGATTTAGACTCCTTAGACTCATCCTTAGAATCCTCAGACTCCTTCGGTTT
CTCATCCTTAGCCTCAGCCTTAGACTCCTCCAGTTTCTCATCCTT
Right flanking sequence: Indices 6758 -- 7257
TCACTCCGGGCTCTTGCTTCACCGTGGCCTCTTCCACCTTGGCCTCTCCCTCAGCCTCCTCGTCC
ACGTCCATCTCCTCCTGCTTGATCTCCACCACCTTGGCCTCCTCAAACTGCGACCGCAACCCCAC
CAACTGCTCCTCGGCCAACCCGCCCAACACCTTGGCCGTCTTGTTGCCCTTGATGCCAATCAACA
CCTCCTCGCAGTTCTTGGGGTTGAACACCTTCACCTCCTTGTCGGACCCCTTGCGGGCCGCGTAC
TTCGACAAAAGCGCCAGCTTGAGCCGGCCCATGGGCACCAGGTCCCCGTGCACCAAGATGATCTT
CAGCGGCTGCACCTTGTCGATGAACTCGGTGTTCTCCTGGAAGTCGACGTGGGCAGCAAACGAGA
TCTCCTCCACGTTGATGTTGCGGGCAATGGTGACGTCGGGGTTCGACACCAGGGGAATGGTGGCG
GGCTCCTTGAGGATCTCCTTGGCCATGGTGCCCTCCACCGAGTAC
Found at i:8350 original size:5 final size:5
Alignment explanation
Indices: 8336--8383 Score: 55
Period size: 5 Copynumber: 9.4 Consensus size: 5
8326 GAAGCCATGG
8336 GTGG- GTGGT GTGGT GTGGT GTGGT G-GTGT GTGGT GGTGTGT GTGGT
1 GTGGT GTGGT GTGGT GTGGT GTGGT GTG-GT GTGGT -GTG-GT GTGGT
8382 GT
1 GT
8384 AGATGCGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
4 5 0.13
5 25 0.64
6 7 0.18
7 2 0.05
ACGTcount: A:0.00, C:0.00, G:0.60, T:0.40
Consensus pattern (5 bp):
GTGGT
Left flanking sequence: Indices 7836 -- 8335
GTACATGCACGCTCCAAGCACGTGGCCCGCGTGGTAGGCGGTGAACCGGACCCCGTTGAGCTCCA
TGGTGGAGTGGAAGTCGATGGTCTCGATCCCGTCGAGCGACAGCATGATGTCCTCGTGCGAGTAC
AAGTTCAGGGCCTCGTCGCCCAGCCGGTCGCCGCCAATCAGCGTCACCAGCACAAAGTCCTTGAC
GAGCCACCGGTAGATGGCCTTGGTGGCATGGGTCATGAACACCTTGCCCCGGAAACGGGTGTGCT
GCATCACGTAGGGCAACAGGGCCGCGTGGTCAAGGTGGAAGTGCGAGATCAAGAGGATGTCCACC
TTTTCAAGGTCGTATTCGTCGTAGAAGGGGAACGCCAGGTGCCCCAGCATCGCCGGGTGGATGCC
TGCGTCGAGCATGATCACCTTGTTTTTGTACTCGATGATGTGGCACAGCCGGCCGACCTCGTTGC
ACCCGCCGAGTCCGAAGAAGCGGAAGTCGTCGGTGGAAGCCATGG
Right flanking sequence: Indices 8384 -- 8883
AGATGCGAAAAAAGGTTGGTGAGAAGGTTGAAAAATGGAAAGGTGGGAGAGAAGAAGGAAGGGTG
GGAAAAAAAGGGTAGAAGGTGGGAAGGATGGGAGAGGTGTGTAGAAAAGGTTGAAGAGGGTGGCA
GGTTGTGATGGGTCGGGCATTGAGTGATGTTGGGGGCGTTTTAGGGTACTTGGTGGTGCGGTAGG
TAGGGCTGTGGTGCGAGGATGAGAAGATTGGAGATGGTTTGAGTGGGAAATAAGGGGAAGGGGGT
TGGGATGGTGCTCAGGGTGTGTTAAAAAGGGTGCTCTAAGAGACAGTTTAGTTGTATTGGTATAA
GTGATTAACCGTGACAATAGGCGACGGATCAGAGTGAGGTTTGCATCAATGCAAGGACACCGATG
AACTTTGAAACACTCGCAATACGACATGCCACTATCAGTGATTGTAGACGTTTACGAGATTGTGG
TGACTACCACGGTTCAAGCTCAATGGAACTGACTTGTTCATCGTT
Found at i:10746 original size:12 final size:12
Alignment explanation
Indices: 10731--10761 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
10721 AAGTGCGCCT
*
10731 GAGCTGTAGCCC
1 GAGCCGTAGCCC
10743 GAGCCGTAGCCC
1 GAGCCGTAGCCC
10755 GAGCCGT
1 GAGCCGT
10762 TAGCGGAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.35, G:0.35, T:0.13
Consensus pattern (12 bp):
GAGCCGTAGCCC
Left flanking sequence: Indices 10231 -- 10730
ACGCGGGCTGGCGGTTGACCTTGGAGGAGAACTTGAACGTCAAGTCGGCGTCGTCGTCCTCCAGC
TCCAGCAGCGAGCCCAGGTCGCTGGCGTCCTCGTGGGCGTCGTTGCGCGGGCCCACGCCGCGGTC
CAGCGGGCGCTTTTTCTGGCCCATGTGGAGGTTGAAGGTGCGGAGCTTTTCGGTGATGCCCAGCA
CGGGCGGGCCTGAGTTTTGCGACAGTGTTTGCGACAAGTAGTTGTCGATGGTGGTGTCGTCCAAC
AGGTCGAGCAGCGCGAACAGGTCCAGGAGCGGGAGCAGCACCAGCAGCGACGGGTTCATCGCGGT
GAGGAGGCTTGGGTGGAGCGCTGTCAGCGAGGTTGTCAGCGGGCCTGAGCACGGGACAGAGTCAG
GGGCGATACCATGGCCAGAGCCAGGGCCAGGGCCACTACCAGGGCCACCAGAGCCGATACCAGAG
CCGGAGACACCAGAGACTGCGGAAACAGCGCCCGAAAGTGCGCCT
Right flanking sequence: Indices 10762 -- 11261
TAGCGGAGGCTCCAGCCACTCCAGACCCGTTTCCAGCAACTCCAGACACGCTACCAACCACTCCA
GACCCGTTTCCAACTCCTCCAGCTCCATTTCCAGCCACTCCCACTCCTCCAGCTCCATTCCCAAC
ACCTCCAGACCCATTTCCATTCCCTCCGGCTCCATTCAGCCTCTTCACATACCCCAACTGACTGT
TGCTCTGGCTCCGCTGCGGACGCATTCCCCCCGCAGCCTGCGCCACCGCGTACCGGTAGCCCCGC
TGGTCCAACGACGCCGTCAGCTTGGGCACCGCAATCGGCATCGCCAGCTCGCAGCCCGCCTCCGC
GCCCACGGGAAGACTCGGCCGCCGGCCCAGCAGCACCGACAGCGACCGCTTGGGCTCGCTCAGCA
CGGGCGTCAGCACCCGCGACCCGAAAATGCTCAGCTTGCGCCGCTTGTCGTCCTTCTCCTGGATG
CCCTTGATGGTGGCAAGCACCGGGGTGCTCAGAAGGTAGACGTCT
Found at i:10796 original size:21 final size:21
Alignment explanation
Indices: 10772--10867 Score: 97
Period size: 21 Copynumber: 4.6 Consensus size: 21
10762 TAGCGGAGGC
10772 TCCAGCCACTCCAGACCCGTT
1 TCCAGCCACTCCAGACCCGTT
* * *
10793 TCCAGCAACTCCAGACACGCT
1 TCCAGCCACTCCAGACCCGTT
* *
10814 ACCAACCACTCCAGACCCGTT
1 TCCAGCCACTCCAGACCCGTT
* *
10835 TCCAACTC-CTCCAG-CTCCATT
1 TCCAGC-CACTCCAGAC-CCGTT
10856 TCCAGCCACTCC
1 TCCAGCCACTCC
10868 CACTCCTCCA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
20 2 0.03
21 58 0.95
22 1 0.02
ACGTcount: A:0.23, C:0.48, G:0.10, T:0.19
Consensus pattern (21 bp):
TCCAGCCACTCCAGACCCGTT
Left flanking sequence: Indices 10272 -- 10771
AAGTCGGCGTCGTCGTCCTCCAGCTCCAGCAGCGAGCCCAGGTCGCTGGCGTCCTCGTGGGCGTC
GTTGCGCGGGCCCACGCCGCGGTCCAGCGGGCGCTTTTTCTGGCCCATGTGGAGGTTGAAGGTGC
GGAGCTTTTCGGTGATGCCCAGCACGGGCGGGCCTGAGTTTTGCGACAGTGTTTGCGACAAGTAG
TTGTCGATGGTGGTGTCGTCCAACAGGTCGAGCAGCGCGAACAGGTCCAGGAGCGGGAGCAGCAC
CAGCAGCGACGGGTTCATCGCGGTGAGGAGGCTTGGGTGGAGCGCTGTCAGCGAGGTTGTCAGCG
GGCCTGAGCACGGGACAGAGTCAGGGGCGATACCATGGCCAGAGCCAGGGCCAGGGCCACTACCA
GGGCCACCAGAGCCGATACCAGAGCCGGAGACACCAGAGACTGCGGAAACAGCGCCCGAAAGTGC
GCCTGAGCTGTAGCCCGAGCCGTAGCCCGAGCCGTTAGCGGAGGC
Right flanking sequence: Indices 10868 -- 11367
CACTCCTCCAGCTCCATTCCCAACACCTCCAGACCCATTTCCATTCCCTCCGGCTCCATTCAGCC
TCTTCACATACCCCAACTGACTGTTGCTCTGGCTCCGCTGCGGACGCATTCCCCCCGCAGCCTGC
GCCACCGCGTACCGGTAGCCCCGCTGGTCCAACGACGCCGTCAGCTTGGGCACCGCAATCGGCAT
CGCCAGCTCGCAGCCCGCCTCCGCGCCCACGGGAAGACTCGGCCGCCGGCCCAGCAGCACCGACA
GCGACCGCTTGGGCTCGCTCAGCACGGGCGTCAGCACCCGCGACCCGAAAATGCTCAGCTTGCGC
CGCTTGTCGTCCTTCTCCTGGATGCCCTTGATGGTGGCAAGCACCGGGGTGCTCAGAAGGTAGAC
GTCTCCGCGAGCGTTGCGCATCGTCTCGATCTGGCACGCCTCCACCAGGCCCAGCCGCGACGGCG
GGTCCCGCAGCGGGTCCAGGGGCCTTTTGCCGGCAAAAGACCCCG
Found at i:12714 original size:9 final size:9
Alignment explanation
Indices: 12702--12733 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
12692 CGGGTGGAAG
*
12702 GAGTCTCGC
1 GAGTCACGC
12711 GAGTCACGC
1 GAGTCACGC
12720 GAGTCACGC
1 GAGTCACGC
12729 GAGTC
1 GAGTC
12734 TCTGTTTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.16
Consensus pattern (9 bp):
GAGTCACGC
Left flanking sequence: Indices 12202 -- 12701
CGAGCACTTCCTTGAGCTTGACGATGTGTTTGTGGTCGCACCGCTTCATGATGGCGATTTCCTTT
TTCACTTTCCGCTCGTGTGGCAGGAGCGTGGGCGGGTTCAGGTCGCCGTAGTACAGGAAGCCCTC
GGCGCGGAGCTGGGGCCGCTTCAGCTTGCGGTTGAGGATCTTGATGGCCACCAACTGGTTCAGCG
CGAGGTCCTTCGCGAGCTTGACCTTGCCGTGCTCGCCGCGGCCGATCTCGAGGAGGATCTCGTAG
GTGTTGAGCACCCGGCGGCGGGTGGCGCGGTCGTACTCGAGGTAGACCCGCGAGGTTTCCTTGAC
GGACGGCGTGGGCAGCATGAGGCGCAGCGCCGGGGCCAGGGCCAGGCTGGGGGTGTGGCTGAGGC
TGTGGTAGCCCGGCTGGTGGGGCAGGTGGCCCAGGAGGACGTGGTGGCCGTTGAGGTGCGGGGGA
ATCAGCGGGGGCGGGCCGCGGACGAGCGGGTCCTTCGGGTGGAAG
Right flanking sequence: Indices 12734 -- 13233
TCTGTTTGGGTCTCGAGAGGGGTCTCTGCCGTAGGGGTCTCTTTCCTTGAACTGGTTAGAATCCC
TGGGGTGGTTAGCGTCCCTGGGATGGACAGACTGGTTAGAGTCCCTGGGCTGGTTCGGATCCCTG
TGCTGGTTCGGGTCTCTGTGCAGGTCTCTAAAGTCCTTGAAGCCCTTGGTAAAGCTGGCGATGTC
CTTCGAGTCTTTCGAGTCTTGAAACTCCTTGTCCTTACCAAATGCATCCTTGGCGTAGTTCGTAG
TGTCTTTCAACCCAGAAAATGTGGCGTCCAGAGAAAAGTTAGAGCCTTTCGTCTCACCAAAGGTG
TCCAGACCAGAAAACCCCTTCGAGCCATTAAACTCTTGAGCCTCTTTGGACTCCTTCTCTTTAGA
TTCCTTGCTTTCCACCAACTCCCTTGACACCCCGGTGGTGGCACTGGCCCGCCCGGGAGTGGTCC
CCATCCCCGGACACGGTGCGTGGTCAGAGACACCCCCATTGATCA
Found at i:12809 original size:18 final size:18
Alignment explanation
Indices: 12786--12820 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12776 TTCCTTGAAC
12786 TGGTTAGAATCCCTGGGG
1 TGGTTAGAATCCCTGGGG
**
12804 TGGTTAGCGTCCCTGGG
1 TGGTTAGAATCCCTGGG
12821 ATGGACAGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.20, G:0.40, T:0.29
Consensus pattern (18 bp):
TGGTTAGAATCCCTGGGG
Left flanking sequence: Indices 12286 -- 12785
GCAGGAGCGTGGGCGGGTTCAGGTCGCCGTAGTACAGGAAGCCCTCGGCGCGGAGCTGGGGCCGC
TTCAGCTTGCGGTTGAGGATCTTGATGGCCACCAACTGGTTCAGCGCGAGGTCCTTCGCGAGCTT
GACCTTGCCGTGCTCGCCGCGGCCGATCTCGAGGAGGATCTCGTAGGTGTTGAGCACCCGGCGGC
GGGTGGCGCGGTCGTACTCGAGGTAGACCCGCGAGGTTTCCTTGACGGACGGCGTGGGCAGCATG
AGGCGCAGCGCCGGGGCCAGGGCCAGGCTGGGGGTGTGGCTGAGGCTGTGGTAGCCCGGCTGGTG
GGGCAGGTGGCCCAGGAGGACGTGGTGGCCGTTGAGGTGCGGGGGAATCAGCGGGGGCGGGCCGC
GGACGAGCGGGTCCTTCGGGTGGAAGGAGTCTCGCGAGTCACGCGAGTCACGCGAGTCTCTGTTT
GGGTCTCGAGAGGGGTCTCTGCCGTAGGGGTCTCTTTCCTTGAAC
Right flanking sequence: Indices 12821 -- 13320
ATGGACAGACTGGTTAGAGTCCCTGGGCTGGTTCGGATCCCTGTGCTGGTTCGGGTCTCTGTGCA
GGTCTCTAAAGTCCTTGAAGCCCTTGGTAAAGCTGGCGATGTCCTTCGAGTCTTTCGAGTCTTGA
AACTCCTTGTCCTTACCAAATGCATCCTTGGCGTAGTTCGTAGTGTCTTTCAACCCAGAAAATGT
GGCGTCCAGAGAAAAGTTAGAGCCTTTCGTCTCACCAAAGGTGTCCAGACCAGAAAACCCCTTCG
AGCCATTAAACTCTTGAGCCTCTTTGGACTCCTTCTCTTTAGATTCCTTGCTTTCCACCAACTCC
CTTGACACCCCGGTGGTGGCACTGGCCCGCCCGGGAGTGGTCCCCATCCCCGGACACGGTGCGTG
GTCAGAGACACCCCCATTGATCACCAAAATGCCCAGCCCCGTCAGCAGCGAGCGCCCGGCCGCAG
GCGCAGCCCGCGTGGTGAGCACACACAGCGTCAGGTGGCCGTGGG
Found at i:12853 original size:18 final size:18
Alignment explanation
Indices: 12830--12871 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
12820 GATGGACAGA
12830 CTGGTTA-GAGTCCCTGGG
1 CTGGTTAGGA-TCCCTGGG
* *
12848 CTGGTTCGGATCCCTGTG
1 CTGGTTAGGATCCCTGGG
12866 CTGGTT
1 CTGGTT
12872 CGGGTCTCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.07, C:0.24, G:0.36, T:0.33
Consensus pattern (18 bp):
CTGGTTAGGATCCCTGGG
Left flanking sequence: Indices 12330 -- 12829
TCGGCGCGGAGCTGGGGCCGCTTCAGCTTGCGGTTGAGGATCTTGATGGCCACCAACTGGTTCAG
CGCGAGGTCCTTCGCGAGCTTGACCTTGCCGTGCTCGCCGCGGCCGATCTCGAGGAGGATCTCGT
AGGTGTTGAGCACCCGGCGGCGGGTGGCGCGGTCGTACTCGAGGTAGACCCGCGAGGTTTCCTTG
ACGGACGGCGTGGGCAGCATGAGGCGCAGCGCCGGGGCCAGGGCCAGGCTGGGGGTGTGGCTGAG
GCTGTGGTAGCCCGGCTGGTGGGGCAGGTGGCCCAGGAGGACGTGGTGGCCGTTGAGGTGCGGGG
GAATCAGCGGGGGCGGGCCGCGGACGAGCGGGTCCTTCGGGTGGAAGGAGTCTCGCGAGTCACGC
GAGTCACGCGAGTCTCTGTTTGGGTCTCGAGAGGGGTCTCTGCCGTAGGGGTCTCTTTCCTTGAA
CTGGTTAGAATCCCTGGGGTGGTTAGCGTCCCTGGGATGGACAGA
Right flanking sequence: Indices 12872 -- 13371
CGGGTCTCTGTGCAGGTCTCTAAAGTCCTTGAAGCCCTTGGTAAAGCTGGCGATGTCCTTCGAGT
CTTTCGAGTCTTGAAACTCCTTGTCCTTACCAAATGCATCCTTGGCGTAGTTCGTAGTGTCTTTC
AACCCAGAAAATGTGGCGTCCAGAGAAAAGTTAGAGCCTTTCGTCTCACCAAAGGTGTCCAGACC
AGAAAACCCCTTCGAGCCATTAAACTCTTGAGCCTCTTTGGACTCCTTCTCTTTAGATTCCTTGC
TTTCCACCAACTCCCTTGACACCCCGGTGGTGGCACTGGCCCGCCCGGGAGTGGTCCCCATCCCC
GGACACGGTGCGTGGTCAGAGACACCCCCATTGATCACCAAAATGCCCAGCCCCGTCAGCAGCGA
GCGCCCGGCCGCAGGCGCAGCCCGCGTGGTGAGCACACACAGCGTCAGGTGGCCGTGGGCCATCG
GAGGCGGGTGGGCGGATGTGGGCGACGTCTGGGTCGACAGCCCGC
Found at i:12872 original size:18 final size:18
Alignment explanation
Indices: 12840--12884 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
12830 CTGGTTAGAG
*
12840 TCCCTGGGCTGGTTCGGA
1 TCCCTGTGCTGGTTCGGA
*
12858 TCCCTGTGCTGGTTCGGG
1 TCCCTGTGCTGGTTCGGA
*
12876 TCTCTGTGC
1 TCCCTGTGC
12885 AGGTCTCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.02, C:0.29, G:0.36, T:0.33
Consensus pattern (18 bp):
TCCCTGTGCTGGTTCGGA
Left flanking sequence: Indices 12340 -- 12839
GCTGGGGCCGCTTCAGCTTGCGGTTGAGGATCTTGATGGCCACCAACTGGTTCAGCGCGAGGTCC
TTCGCGAGCTTGACCTTGCCGTGCTCGCCGCGGCCGATCTCGAGGAGGATCTCGTAGGTGTTGAG
CACCCGGCGGCGGGTGGCGCGGTCGTACTCGAGGTAGACCCGCGAGGTTTCCTTGACGGACGGCG
TGGGCAGCATGAGGCGCAGCGCCGGGGCCAGGGCCAGGCTGGGGGTGTGGCTGAGGCTGTGGTAG
CCCGGCTGGTGGGGCAGGTGGCCCAGGAGGACGTGGTGGCCGTTGAGGTGCGGGGGAATCAGCGG
GGGCGGGCCGCGGACGAGCGGGTCCTTCGGGTGGAAGGAGTCTCGCGAGTCACGCGAGTCACGCG
AGTCTCTGTTTGGGTCTCGAGAGGGGTCTCTGCCGTAGGGGTCTCTTTCCTTGAACTGGTTAGAA
TCCCTGGGGTGGTTAGCGTCCCTGGGATGGACAGACTGGTTAGAG
Right flanking sequence: Indices 12885 -- 13384
AGGTCTCTAAAGTCCTTGAAGCCCTTGGTAAAGCTGGCGATGTCCTTCGAGTCTTTCGAGTCTTG
AAACTCCTTGTCCTTACCAAATGCATCCTTGGCGTAGTTCGTAGTGTCTTTCAACCCAGAAAATG
TGGCGTCCAGAGAAAAGTTAGAGCCTTTCGTCTCACCAAAGGTGTCCAGACCAGAAAACCCCTTC
GAGCCATTAAACTCTTGAGCCTCTTTGGACTCCTTCTCTTTAGATTCCTTGCTTTCCACCAACTC
CCTTGACACCCCGGTGGTGGCACTGGCCCGCCCGGGAGTGGTCCCCATCCCCGGACACGGTGCGT
GGTCAGAGACACCCCCATTGATCACCAAAATGCCCAGCCCCGTCAGCAGCGAGCGCCCGGCCGCA
GGCGCAGCCCGCGTGGTGAGCACACACAGCGTCAGGTGGCCGTGGGCCATCGGAGGCGGGTGGGC
GGATGTGGGCGACGTCTGGGTCGACAGCCCGCGCGAACGGGTCGG
Found at i:13452 original size:21 final size:21
Alignment explanation
Indices: 13428--13479 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
13418 GGGCGTGGTG
*
13428 GACGCGGTGGTGGACGCCGGA
1 GACGCCGTGGTGGACGCCGGA
13449 GACGCCGTGGTGGACGCCGTG-
1 GACGCCGTGGTGGACGCCG-GA
13470 GACGCCGTGG
1 GACGCCGTGG
13480 AAAACGGGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.12, C:0.27, G:0.50, T:0.12
Consensus pattern (21 bp):
GACGCCGTGGTGGACGCCGGA
Left flanking sequence: Indices 12928 -- 13427
CCTTCGAGTCTTTCGAGTCTTGAAACTCCTTGTCCTTACCAAATGCATCCTTGGCGTAGTTCGTA
GTGTCTTTCAACCCAGAAAATGTGGCGTCCAGAGAAAAGTTAGAGCCTTTCGTCTCACCAAAGGT
GTCCAGACCAGAAAACCCCTTCGAGCCATTAAACTCTTGAGCCTCTTTGGACTCCTTCTCTTTAG
ATTCCTTGCTTTCCACCAACTCCCTTGACACCCCGGTGGTGGCACTGGCCCGCCCGGGAGTGGTC
CCCATCCCCGGACACGGTGCGTGGTCAGAGACACCCCCATTGATCACCAAAATGCCCAGCCCCGT
CAGCAGCGAGCGCCCGGCCGCAGGCGCAGCCCGCGTGGTGAGCACACACAGCGTCAGGTGGCCGT
GGGCCATCGGAGGCGGGTGGGCGGATGTGGGCGACGTCTGGGTCGACAGCCCGCGCGAACGGGTC
GGGTAGGGCGTGGTGGCGGCGGTGGTAGGCGCGTAGGGCGTGGTG
Right flanking sequence: Indices 13480 -- 13979
AAAACGGGTGGCCCGAAGGGGGGCCCGACGGCGCCAGCGACGCGTACGCCGCCAGCGACGGGCAG
CACGCGGCAGGGACGGACCCAAGCGTGCCCGGGATGGCCGTGGCTTGGGCGTTTTGGGGGTGGTT
CAGCGTCGTGGACGGTTTTTCTCCACCGGACTCGCCAAGCCTCGGTGGTGTAGGGGGTCCCGGGT
CGAGATTCTGGCCCAGGGGCGCTCCAGGCGGGTCGGGCGGCGTGTCGGCAGCGGGGACACGCGCG
GCAGACATGGTTTTGTTCGGTGGTGTGGCTAGAGGGCTCCCCTCAGGGTCATGGAACGGGCTGAT
CTCAAAGGTTTTTTGACTTTTTTTGGCCGTCTTTTTTCGGTGAGGACAAGGGCCCATAGCAACCG
GTGTCGCGGCGGGAGGCCGGGACGGGGACGGGAAGCGGGCGGAGGCGGTGGTGGGGCGCGGGCTG
GCGCGGCAGGGGGTGCCCGGGTGGGCCTGGTGGTTTTTTTTGCCC
Found at i:13466 original size:12 final size:12
Alignment explanation
Indices: 13421--13470 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
13411 GCGCGTAGGG
13421 CGTGGTGGACGC
1 CGTGGTGGACGC
*
13433 GGTGGTGGACGC
1 CGTGGTGGACGC
*
13445 C--GG-AGACGC
1 CGTGGTGGACGC
13454 CGTGGTGGACGC
1 CGTGGTGGACGC
13466 CGTGG
1 CGTGG
13471 ACGCCGTGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
9 6 0.19
10 2 0.06
11 2 0.06
12 21 0.68
ACGTcount: A:0.10, C:0.24, G:0.52, T:0.14
Consensus pattern (12 bp):
CGTGGTGGACGC
Left flanking sequence: Indices 12921 -- 13420
GCGATGTCCTTCGAGTCTTTCGAGTCTTGAAACTCCTTGTCCTTACCAAATGCATCCTTGGCGTA
GTTCGTAGTGTCTTTCAACCCAGAAAATGTGGCGTCCAGAGAAAAGTTAGAGCCTTTCGTCTCAC
CAAAGGTGTCCAGACCAGAAAACCCCTTCGAGCCATTAAACTCTTGAGCCTCTTTGGACTCCTTC
TCTTTAGATTCCTTGCTTTCCACCAACTCCCTTGACACCCCGGTGGTGGCACTGGCCCGCCCGGG
AGTGGTCCCCATCCCCGGACACGGTGCGTGGTCAGAGACACCCCCATTGATCACCAAAATGCCCA
GCCCCGTCAGCAGCGAGCGCCCGGCCGCAGGCGCAGCCCGCGTGGTGAGCACACACAGCGTCAGG
TGGCCGTGGGCCATCGGAGGCGGGTGGGCGGATGTGGGCGACGTCTGGGTCGACAGCCCGCGCGA
ACGGGTCGGGTAGGGCGTGGTGGCGGCGGTGGTAGGCGCGTAGGG
Right flanking sequence: Indices 13471 -- 13970
ACGCCGTGGAAAACGGGTGGCCCGAAGGGGGGCCCGACGGCGCCAGCGACGCGTACGCCGCCAGC
GACGGGCAGCACGCGGCAGGGACGGACCCAAGCGTGCCCGGGATGGCCGTGGCTTGGGCGTTTTG
GGGGTGGTTCAGCGTCGTGGACGGTTTTTCTCCACCGGACTCGCCAAGCCTCGGTGGTGTAGGGG
GTCCCGGGTCGAGATTCTGGCCCAGGGGCGCTCCAGGCGGGTCGGGCGGCGTGTCGGCAGCGGGG
ACACGCGCGGCAGACATGGTTTTGTTCGGTGGTGTGGCTAGAGGGCTCCCCTCAGGGTCATGGAA
CGGGCTGATCTCAAAGGTTTTTTGACTTTTTTTGGCCGTCTTTTTTCGGTGAGGACAAGGGCCCA
TAGCAACCGGTGTCGCGGCGGGAGGCCGGGACGGGGACGGGAAGCGGGCGGAGGCGGTGGTGGGG
CGCGGGCTGGCGCGGCAGGGGGTGCCCGGGTGGGCCTGGTGGTTT
Found at i:14916 original size:16 final size:14
Alignment explanation
Indices: 14869--14924 Score: 71
Period size: 14 Copynumber: 4.0 Consensus size: 14
14859 CGGTAGTACG
14869 TGGATGCAGT--GT
1 TGGATGCAGTGGGT
14881 TGGATGCAGTGGGT
1 TGGATGCAGTGGGT
14895 TGGATGCAGTGGGT
1 TGGATGCAGTGGGT
*
14909 GGTGGATGCAGCGGGT
1 --TGGATGCAGTGGGT
14925 AGGGTTTTAG
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
12 10 0.26
14 16 0.41
16 13 0.33
ACGTcount: A:0.14, C:0.09, G:0.50, T:0.27
Consensus pattern (14 bp):
TGGATGCAGTGGGT
Left flanking sequence: Indices 14369 -- 14868
TCTGGCGGGCCAGATGCTACTAGGATAGGTGGGGTTATGTAGAGGGAAGGGTGGGGACTATATAG
AGTAGGTGGCGAACGGACGGCTTCGTTTGGGCTCGATCATGCCACCGGCCGCCCTGCGGTTGCAG
CGGTGGGTGCAGCTGCGTCGGAACTGCCTGCTGTCGTCTGCTCGGGCACGCTTGCCGATCGAGGC
TTTGCAAGAGGGGTACAGAAAAGAAACTGGTGACAAGTGGTGCGAGATGAGAAGGGACGAGAGGG
GACGGGAAGAGTGGGGATGAAAAGAGAGGGGTAGAGGTGGTTGGTTATGGGTTAGAGGTGTGGTT
GGTGGAGTTGGTGGGTGGCTATCGAGTTGTAGTTTGGTTACGTGGATATGGTCCGGTGTAGGTTA
GGGGTAGACGTAATCGTGTGGTTTGTACCACCAGGGAACCCAGTTCTGCAGTTGGGTGCGGGTTG
CAGCTGGTTATGAACCGGGCACGACACCCAGGCCCCGGTAGTACG
Right flanking sequence: Indices 14925 -- 15424
AGGGTTTTAGGGGTGTCTAGTGGTGGCCCAATGGTGGCCAAGTGGTGTTGGGTGGTTACAAGGGG
CACTGTGTGATCATCTAACCGGTCATCGATGGTGTCATCGTTTTGGCGGAAACGGTTGCTGAGAG
AACGGTTAGCATCCGGTGGGATCTGTGTGGCTTCCGGAGGTATGGGCGGGTCCGAGGCTTTGGGG
GCACAGAGGCATTCGGGCACAGAGCATTGGGGGACAGAGCATTGCTGGCATTGTTGCCGTGCTGT
GTGGTATCGCCGTGTTCCACCCGCTTCGGTGGGGTTCGATGCTGGGCGAGATCTACGAAGGTATT
GGCCAGAGATAGTAACCAGTAGCACTAGAGAGACTAGTAGCAGTAGTGGCGATTGTAACAGTAGA
TTGGCCAGAGATAATCACCAGTGCTTGGCAGAAATAGCCACCAGTGCTTGCTTGATACTACCAGT
GGTCCACCGTAATTACCACCACATTCGAATTTCACTTCAGAGCAA
Found at i:15156 original size:15 final size:15
Alignment explanation
Indices: 15114--15163 Score: 64
Period size: 15 Copynumber: 3.2 Consensus size: 15
15104 GTCCGAGGCT
15114 TTGGGGGCACAGAGGCA
1 TTGGGGG-ACAGA-GCA
* *
15131 TTCGGGCACAGAGCA
1 TTGGGGGACAGAGCA
15146 TTGGGGGACAGAGCA
1 TTGGGGGACAGAGCA
15161 TTG
1 TTG
15164 CTGGCATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 19 0.66
16 5 0.17
17 5 0.17
ACGTcount: A:0.24, C:0.18, G:0.42, T:0.16
Consensus pattern (15 bp):
TTGGGGGACAGAGCA
Left flanking sequence: Indices 14614 -- 15113
GAAGGGACGAGAGGGGACGGGAAGAGTGGGGATGAAAAGAGAGGGGTAGAGGTGGTTGGTTATGG
GTTAGAGGTGTGGTTGGTGGAGTTGGTGGGTGGCTATCGAGTTGTAGTTTGGTTACGTGGATATG
GTCCGGTGTAGGTTAGGGGTAGACGTAATCGTGTGGTTTGTACCACCAGGGAACCCAGTTCTGCA
GTTGGGTGCGGGTTGCAGCTGGTTATGAACCGGGCACGACACCCAGGCCCCGGTAGTACGTGGAT
GCAGTGTTGGATGCAGTGGGTTGGATGCAGTGGGTGGTGGATGCAGCGGGTAGGGTTTTAGGGGT
GTCTAGTGGTGGCCCAATGGTGGCCAAGTGGTGTTGGGTGGTTACAAGGGGCACTGTGTGATCAT
CTAACCGGTCATCGATGGTGTCATCGTTTTGGCGGAAACGGTTGCTGAGAGAACGGTTAGCATCC
GGTGGGATCTGTGTGGCTTCCGGAGGTATGGGCGGGTCCGAGGCT
Right flanking sequence: Indices 15164 -- 15663
CTGGCATTGTTGCCGTGCTGTGTGGTATCGCCGTGTTCCACCCGCTTCGGTGGGGTTCGATGCTG
GGCGAGATCTACGAAGGTATTGGCCAGAGATAGTAACCAGTAGCACTAGAGAGACTAGTAGCAGT
AGTGGCGATTGTAACAGTAGATTGGCCAGAGATAATCACCAGTGCTTGGCAGAAATAGCCACCAG
TGCTTGCTTGATACTACCAGTGGTCCACCGTAATTACCACCACATTCGAATTTCACTTCAGAGCA
AGGCATCCGACCTTGCTGGCAGCAGACCACCGCCCCACCAGCCGCCTATTTCCGCGTAGGAACCG
TGATTCCCGCGGTGCTTCTACGAGAAACAGCAATCCACGGGCTGATTGGGTACGGGAATACGAGC
ACACGCAACGCGCCTTCCCAAAACGGACACCGGTGCTATCCGCCCAATCGGACCACCAGCGTCTA
CGTCTGTGCTCGCACAACCTGTTTGTGGCGTTTAGCCCCCTGTTT
Found at i:18689 original size:11 final size:11
Alignment explanation
Indices: 18675--18713 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
18665 GTCAGGGTGC
18675 TGGTGGGGCCG
1 TGGTGGGGCCG
18686 TGGTGGGGCCG
1 TGGTGGGGCCG
* *
18697 TGGAGAGGCCG
1 TGGTGGGGCCG
18708 TGGTGG
1 TGGTGG
18714 TTCCGGTGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.05, C:0.15, G:0.62, T:0.18
Consensus pattern (11 bp):
TGGTGGGGCCG
Left flanking sequence: Indices 18175 -- 18674
CCTGGGGAGCGTACTTGACGATGGCCTCGAGGATCAGCTTGGTGCCTGTGATCGCCGGCTGCAAA
ATGTCCCGTTCGGGGTCCTCGACCGAGAACGTGAACGGCAGGGCGGTGTGGAGCACCGTGGTGAT
CTCCGGGTGGTCCTGGAGCACCTTGTCGAACGCGTGGGGGTCTGCCAAGTCGGTGACGATCTCAA
AACTGAGGTTGACGGGGTTGCCGAGCGCCTGGGCAAGCTTCGAGCCCTTCTCCTTCGATCTGACG
GTTCCGACGACCCGGAATCCGTTCTCGATGAGGTACTTTACGATCCACTGGGCGATGTACCCGTT
AGCCCCGGTGACGAGAACAGTAGACATGGTGTTGTAGAGGTATTGTGTGGCGATCGGGTCGGTAT
ATGGCTACGGTGTGCATGTGAAGACCATGGTGGGGTAGCGGAGATACGCGCTACCGGCCGTTGGT
GGTGTGGGCTGTGGAAAAAAGGTGGGGTAGAGGCTGTCAGGGTGC
Right flanking sequence: Indices 18714 -- 19213
TTCCGGTGGGGCCCTGGTGGTCGTTCCGGTGACAGTGACCGATTAGGAAATTTTTGAGGGGTCAG
AGAAGAGGTGGTGGGTGGAAGAGACGGGTGGTGGGGTGGAAGAGCACATTGAGGGGCTTGCAAGG
GCCTGCACGTAGTGAATGGTGGTCGGCTAGAGTAGAGCCGATCGATTTGGGCAGTTTGTGGAGTG
TAGAGTGTAAGCGTAAAATGTCTTAAAAAAGTCTAGTAGGTGTGAAAGGATTGGGCTCGGGTGGG
GGCTTAGAACGACTTAAGTCGCGCCGGATCCGTCCAAAAGTCTAATTCTCGCGCTTGTTTGTTTT
GACTCTTGAGACATCGTTGCTATAGGCTTGAAGCTGGGTCTGGGCTGTCTGCAGGAATTTGGAAC
ACCGGTGGACAGCGACATATAGACGCAAGCCAGGGTGGAGAATCCAGCTAGGGCGTATCCAGGCA
GTATCCAGGCCATACCTAGGTCGTATTCAGCCTGTTTCACCACTG
Found at i:18801 original size:21 final size:21
Alignment explanation
Indices: 18777--18822 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
18767 TTGAGGGGTC
18777 AGAGAAGAGGTGGT-GGGTGGA
1 AGAGAAG-GGTGGTGGGGTGGA
*
18798 AGAGACGGGTGGTGGGGTGGA
1 AGAGAAGGGTGGTGGGGTGGA
18819 AGAG
1 AGAG
18823 CACATTGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.26, C:0.02, G:0.59, T:0.13
Consensus pattern (21 bp):
AGAGAAGGGTGGTGGGGTGGA
Left flanking sequence: Indices 18277 -- 18776
GCAGGGCGGTGTGGAGCACCGTGGTGATCTCCGGGTGGTCCTGGAGCACCTTGTCGAACGCGTGG
GGGTCTGCCAAGTCGGTGACGATCTCAAAACTGAGGTTGACGGGGTTGCCGAGCGCCTGGGCAAG
CTTCGAGCCCTTCTCCTTCGATCTGACGGTTCCGACGACCCGGAATCCGTTCTCGATGAGGTACT
TTACGATCCACTGGGCGATGTACCCGTTAGCCCCGGTGACGAGAACAGTAGACATGGTGTTGTAG
AGGTATTGTGTGGCGATCGGGTCGGTATATGGCTACGGTGTGCATGTGAAGACCATGGTGGGGTA
GCGGAGATACGCGCTACCGGCCGTTGGTGGTGTGGGCTGTGGAAAAAAGGTGGGGTAGAGGCTGT
CAGGGTGCTGGTGGGGCCGTGGTGGGGCCGTGGAGAGGCCGTGGTGGTTCCGGTGGGGCCCTGGT
GGTCGTTCCGGTGACAGTGACCGATTAGGAAATTTTTGAGGGGTC
Right flanking sequence: Indices 18823 -- 19322
CACATTGAGGGGCTTGCAAGGGCCTGCACGTAGTGAATGGTGGTCGGCTAGAGTAGAGCCGATCG
ATTTGGGCAGTTTGTGGAGTGTAGAGTGTAAGCGTAAAATGTCTTAAAAAAGTCTAGTAGGTGTG
AAAGGATTGGGCTCGGGTGGGGGCTTAGAACGACTTAAGTCGCGCCGGATCCGTCCAAAAGTCTA
ATTCTCGCGCTTGTTTGTTTTGACTCTTGAGACATCGTTGCTATAGGCTTGAAGCTGGGTCTGGG
CTGTCTGCAGGAATTTGGAACACCGGTGGACAGCGACATATAGACGCAAGCCAGGGTGGAGAATC
CAGCTAGGGCGTATCCAGGCAGTATCCAGGCCATACCTAGGTCGTATTCAGCCTGTTTCACCACT
GTGAACCCCGCGTTCTGGGTTCTTCCCTCTGGTTTAGCCGTATATAGACCCGTCGGGTCTATGCA
GGAGCCCAGGCTCGGTGACCCAATGACGCCGCCAGCAGCACCCGG
Found at i:19478 original size:9 final size:9
Alignment explanation
Indices: 19455--19489 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
19445 AACCATACAC
19455 CCACCACACG
1 CCACCAC-CG
19465 CCCACCACCG
1 -CCACCACCG
19475 CCACCACCG
1 CCACCACCG
19484 CCACCA
1 CCACCA
19490 ACCACCCCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.62
10 2 0.08
11 7 0.29
ACGTcount: A:0.26, C:0.66, G:0.09, T:0.00
Consensus pattern (9 bp):
CCACCACCG
Left flanking sequence: Indices 18955 -- 19454
AGGATTGGGCTCGGGTGGGGGCTTAGAACGACTTAAGTCGCGCCGGATCCGTCCAAAAGTCTAAT
TCTCGCGCTTGTTTGTTTTGACTCTTGAGACATCGTTGCTATAGGCTTGAAGCTGGGTCTGGGCT
GTCTGCAGGAATTTGGAACACCGGTGGACAGCGACATATAGACGCAAGCCAGGGTGGAGAATCCA
GCTAGGGCGTATCCAGGCAGTATCCAGGCCATACCTAGGTCGTATTCAGCCTGTTTCACCACTGT
GAACCCCGCGTTCTGGGTTCTTCCCTCTGGTTTAGCCGTATATAGACCCGTCGGGTCTATGCAGG
AGCCCAGGCTCGGTGACCCAATGACGCCGCCAGCAGCACCCGGCACCGCTAGCAAGGCTCGGTTC
TGTTTCTACTAGCCCCACAAAACACATCGATCTCTTTTCCCTTTCTTCCCAGCGCGTTCTGCGTG
CTCTACCCACCACTTCTCTTCCCACACAGCCAACGAACCATACAC
Right flanking sequence: Indices 19490 -- 19989
ACCACCCCCATCCACCTCTCTCCATCGCCCCCCCTCTCCTCTCCACCCGCCCGCTTCTCCCCGTC
GCCCGTTCCCACGCGTCCTCGCCCTTCCTTCTCCGACCCCTCCCGGTTGCCTCATTTTTCTCACC
ACACCCACTAGCACCACCAGGCACCCAGCCTTCCCACAATGAACGCCGCCGCCACGAACCCCACG
GCGACTCCCCAGATACCCAACGGACAGCCCCAGCAACCCACACCGCCTCGCACCCTGAAACTACC
CGACGTGGTGCGGATCGAGGACATCGAGGAGGGGAGGGTCGAGCCCCAGGCGGTGTTTGACGAGC
TCGACGCCTTGAAGGCCGAGATCAACGGGTTGCGCAATGCCATGGCCCAGTTTGTCACTGCGTTG
GCCACGGTGCCCAAGGGCCAGTCCCAGCACCACTACTACGAGCTGGTGGTGAAGAAGCTCAAGAA
CTTGCAGGCGGCGATTGCCGAGTACCTGCGCCAGTACCAGCGGTT
Found at i:20119 original size:29 final size:29
Alignment explanation
Indices: 20082--20148 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
20072 GGACGGAGGT
* *
20082 AGGAGAAAGGAGGGGGAAAAGGAGAAAGG
1 AGGAGAAAGGAAGGGGAAAAGAAGAAAGG
* *
20111 AGGAGAAAGGAAGGGGAAGAGAAGAATGG
1 AGGAGAAAGGAAGGGGAAAAGAAGAAAGG
*
20140 AGAAGAAAG
1 AGGAGAAAG
20149 AAAGAGAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.48, T:0.01
Consensus pattern (29 bp):
AGGAGAAAGGAAGGGGAAAAGAAGAAAGG
Left flanking sequence: Indices 19582 -- 20081
CTTCTCCGACCCCTCCCGGTTGCCTCATTTTTCTCACCACACCCACTAGCACCACCAGGCACCCA
GCCTTCCCACAATGAACGCCGCCGCCACGAACCCCACGGCGACTCCCCAGATACCCAACGGACAG
CCCCAGCAACCCACACCGCCTCGCACCCTGAAACTACCCGACGTGGTGCGGATCGAGGACATCGA
GGAGGGGAGGGTCGAGCCCCAGGCGGTGTTTGACGAGCTCGACGCCTTGAAGGCCGAGATCAACG
GGTTGCGCAATGCCATGGCCCAGTTTGTCACTGCGTTGGCCACGGTGCCCAAGGGCCAGTCCCAG
CACCACTACTACGAGCTGGTGGTGAAGAAGCTCAAGAACTTGCAGGCGGCGATTGCCGAGTACCT
GCGCCAGTACCAGCGGTTGGTGCCGTTGATCACGGTGGCGGAGCAGAGGCTCGGGAATGGCCAGG
CCCAGCAGGCGCAGCCCCAGCAGCGGCAGGTGAAGGGACGGAGGT
Right flanking sequence: Indices 20149 -- 20648
AAAGAGAAAGGAAGGACAGCTTTGAATTGGACGTGTTGCCATGTATTCGAAACCATGGTCTCTGT
GGCCTATGTTTGAGCCTATTTGAGCCTGTTTGAGCCTATGTTTGAGCCTACGTTTGAGCCTATGT
TTGCCTATGTGGGAACTTTGTTAGTCACTCTGACTTGACACTGCCTACCTTCACCGTTGTTTCTC
CTTTCATTCATCGTTGGACGTCATTCCAACGTTCTTCACTCGCTGGTTGCATTTCTGCACTGCAT
GACTGTCTGACACTGCGTCATACCGTCTTCTCTCTTACCAGGTCTCGATAGAGATCTTCAGCGAC
AGGTGTCATCCACCCAAATGCTTCGATTACCCTTTTGGGTTATTGGATACATGCCACCATGTCCC
CCGAGCGCTTTATTTTCCGGTGACGTTTTGGGATAGTCACCTGATGCATCGTGGCGTGGTGGTGT
TCGCCGGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTG
Found at i:20232 original size:12 final size:12
Alignment explanation
Indices: 20215--20281 Score: 97
Period size: 12 Copynumber: 5.9 Consensus size: 12
20205 GGTCTCTGTG
20215 GCCTATGTTTGA
1 GCCTATGTTTGA
20227 GCCTA--TTTGA
1 GCCTATGTTTGA
20237 GCC--TGTTTGA
1 GCCTATGTTTGA
20247 GCCTATGTTTGA
1 GCCTATGTTTGA
*
20259 GCCTACGTTTGA
1 GCCTATGTTTGA
20271 GCCTATGTTTG
1 GCCTATGTTTG
20282 CCTATGTGGG
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
10 16 0.33
12 33 0.67
ACGTcount: A:0.15, C:0.19, G:0.25, T:0.40
Consensus pattern (12 bp):
GCCTATGTTTGA
Left flanking sequence: Indices 19715 -- 20214
CAGCAACCCACACCGCCTCGCACCCTGAAACTACCCGACGTGGTGCGGATCGAGGACATCGAGGA
GGGGAGGGTCGAGCCCCAGGCGGTGTTTGACGAGCTCGACGCCTTGAAGGCCGAGATCAACGGGT
TGCGCAATGCCATGGCCCAGTTTGTCACTGCGTTGGCCACGGTGCCCAAGGGCCAGTCCCAGCAC
CACTACTACGAGCTGGTGGTGAAGAAGCTCAAGAACTTGCAGGCGGCGATTGCCGAGTACCTGCG
CCAGTACCAGCGGTTGGTGCCGTTGATCACGGTGGCGGAGCAGAGGCTCGGGAATGGCCAGGCCC
AGCAGGCGCAGCCCCAGCAGCGGCAGGTGAAGGGACGGAGGTAGGAGAAAGGAGGGGGAAAAGGA
GAAAGGAGGAGAAAGGAAGGGGAAGAGAAGAATGGAGAAGAAAGAAAGAGAAAGGAAGGACAGCT
TTGAATTGGACGTGTTGCCATGTATTCGAAACCATGGTCTCTGTG
Right flanking sequence: Indices 20282 -- 20781
CCTATGTGGGAACTTTGTTAGTCACTCTGACTTGACACTGCCTACCTTCACCGTTGTTTCTCCTT
TCATTCATCGTTGGACGTCATTCCAACGTTCTTCACTCGCTGGTTGCATTTCTGCACTGCATGAC
TGTCTGACACTGCGTCATACCGTCTTCTCTCTTACCAGGTCTCGATAGAGATCTTCAGCGACAGG
TGTCATCCACCCAAATGCTTCGATTACCCTTTTGGGTTATTGGATACATGCCACCATGTCCCCCG
AGCGCTTTATTTTCCGGTGACGTTTTGGGATAGTCACCTGATGCATCGTGGCGTGGTGGTGTTCG
CCGGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACCGCCATTCTA
ATTTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAACGAGTGTAG
CAAACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGC
Found at i:20743 original size:13 final size:13
Alignment explanation
Indices: 20725--20776 Score: 95
Period size: 13 Copynumber: 4.0 Consensus size: 13
20715 AGAACAGTGG
20725 AAACGAGTGTAGC
1 AAACGAGTGTAGC
20738 AAACGAGTGTAGC
1 AAACGAGTGTAGC
20751 AAACGAGTGTAGC
1 AAACGAGTGTAGC
*
20764 AAACGAATGTAGC
1 AAACGAGTGTAGC
20777 GAAGCAAAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (13 bp):
AAACGAGTGTAGC
Left flanking sequence: Indices 20225 -- 20724
GAGCCTATTTGAGCCTGTTTGAGCCTATGTTTGAGCCTACGTTTGAGCCTATGTTTGCCTATGTG
GGAACTTTGTTAGTCACTCTGACTTGACACTGCCTACCTTCACCGTTGTTTCTCCTTTCATTCAT
CGTTGGACGTCATTCCAACGTTCTTCACTCGCTGGTTGCATTTCTGCACTGCATGACTGTCTGAC
ACTGCGTCATACCGTCTTCTCTCTTACCAGGTCTCGATAGAGATCTTCAGCGACAGGTGTCATCC
ACCCAAATGCTTCGATTACCCTTTTGGGTTATTGGATACATGCCACCATGTCCCCCGAGCGCTTT
ATTTTCCGGTGACGTTTTGGGATAGTCACCTGATGCATCGTGGCGTGGTGGTGTTCGCCGGCTGT
CTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACCGCCATTCTAATTTTAGT
GTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGG
Right flanking sequence: Indices 20777 -- 21276
GAAGCAAAGGTAGTGGAACGAAGGTAGTGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATC
ATCTAGAACCAATCTTCAATTTTACGAACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACC
ACACAACTTCAAAATCTTCCATTAGTTCTCTACCTTTCCACTTCCCACCTCTCCACCTCTCCATC
TTTCCACCCTCCATCTCTCCACCTCCAGCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGT
TCCTCAGCCCACAAAATCAGCACACGACAGAGCCCGCCAATTCTTCCCAACACCAATTGACCCAC
CACTACCACCACTACCACCACTACCACCACCACCACTACCACTACAATTACCACCACCACTACCT
CCCCTCACCCCCCTCCTTTTCTCTCGCCTCCTCCTCTTCTCTCCCCCTCTCCTCTTCTCACTTCT
CCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCATAACCCTGC
Found at i:20800 original size:14 final size:14
Alignment explanation
Indices: 20783--20822 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
20773 TAGCGAAGCA
20783 AAGGTAGTGGAACG
1 AAGGTAGTGGAACG
20797 AAGGTAGTGGAACG
1 AAGGTAGTGGAACG
*
20811 AAGGTAGCGGAA
1 AAGGTAGTGGAA
20823 ACAAGTAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.38, C:0.07, G:0.42, T:0.12
Consensus pattern (14 bp):
AAGGTAGTGGAACG
Left flanking sequence: Indices 20283 -- 20782
CTATGTGGGAACTTTGTTAGTCACTCTGACTTGACACTGCCTACCTTCACCGTTGTTTCTCCTTT
CATTCATCGTTGGACGTCATTCCAACGTTCTTCACTCGCTGGTTGCATTTCTGCACTGCATGACT
GTCTGACACTGCGTCATACCGTCTTCTCTCTTACCAGGTCTCGATAGAGATCTTCAGCGACAGGT
GTCATCCACCCAAATGCTTCGATTACCCTTTTGGGTTATTGGATACATGCCACCATGTCCCCCGA
GCGCTTTATTTTCCGGTGACGTTTTGGGATAGTCACCTGATGCATCGTGGCGTGGTGGTGTTCGC
CGGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACCGCCATTCTAA
TTTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAACGAGTGTAGC
AAACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGCA
Right flanking sequence: Indices 20823 -- 21322
ACAAGTAGCGAATCTAATCATCTAGAACCAATCTTCAATTTTACGAACAGTCAATAGCCTGCTTC
TGAGACAATACAAACAACCACACAACTTCAAAATCTTCCATTAGTTCTCTACCTTTCCACTTCCC
ACCTCTCCACCTCTCCATCTTTCCACCCTCCATCTCTCCACCTCCAGCCTCTTCTCCAAACCCCG
ACGTCAGATCCACCATTGTTCCTCAGCCCACAAAATCAGCACACGACAGAGCCCGCCAATTCTTC
CCAACACCAATTGACCCACCACTACCACCACTACCACCACTACCACCACCACCACTACCACTACA
ATTACCACCACCACTACCTCCCCTCACCCCCCTCCTTTTCTCTCGCCTCCTCCTCTTCTCTCCCC
CTCTCCTCTTCTCACTTCTCCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCATAACCCTGCA
CACCAACTCCCCATGAGACCCTCGATCCCCCGGTGGGGCCGGCTC
Found at i:20964 original size:8 final size:8
Alignment explanation
Indices: 20933--20996 Score: 60
Period size: 8 Copynumber: 8.2 Consensus size: 8
20923 TTCCATTAGT
*
20933 TCTCTACC
1 TCTCCACC
* *
20941 TTTCCACT
1 TCTCCACC
20949 TC-CCACC
1 TCTCCACC
20956 TCTCCACC
1 TCTCCACC
*
20964 TCTCCATC
1 TCTCCACC
*
20972 TTTCCACC
1 TCTCCACC
*
20980 -CTCCATC
1 TCTCCACC
20987 TCTCCACC
1 TCTCCACC
20995 TC
1 TC
20997 CAGCCTCTTC
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
7 11 0.26
8 32 0.74
ACGTcount: A:0.12, C:0.55, G:0.00, T:0.33
Consensus pattern (8 bp):
TCTCCACC
Left flanking sequence: Indices 20433 -- 20932
GTCTTCTCTCTTACCAGGTCTCGATAGAGATCTTCAGCGACAGGTGTCATCCACCCAAATGCTTC
GATTACCCTTTTGGGTTATTGGATACATGCCACCATGTCCCCCGAGCGCTTTATTTTCCGGTGAC
GTTTTGGGATAGTCACCTGATGCATCGTGGCGTGGTGGTGTTCGCCGGCTGTCTGTGTCTGTCAC
GCTTGGCGCACCAACCCATTGGCCATTGCACTACCGCCATTCTAATTTTAGTGTATGCCATCTAA
TGATTAATAGTCGAATCAATGAAGAACAGTGGAAACGAGTGTAGCAAACGAGTGTAGCAAACGAG
TGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGGAACGAAGGTAGTGGAACGAAGGTAGCGGAA
ACAAGTAGCGAATCTAATCATCTAGAACCAATCTTCAATTTTACGAACAGTCAATAGCCTGCTTC
TGAGACAATACAAACAACCACACAACTTCAAAATCTTCCATTAGT
Right flanking sequence: Indices 20997 -- 21496
CAGCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAATCAGCACAC
GACAGAGCCCGCCAATTCTTCCCAACACCAATTGACCCACCACTACCACCACTACCACCACTACC
ACCACCACCACTACCACTACAATTACCACCACCACTACCTCCCCTCACCCCCCTCCTTTTCTCTC
GCCTCCTCCTCTTCTCTCCCCCTCTCCTCTTCTCACTTCTCCCCTCCTCTACCCTCCTCCCACCG
CATTTTTCTCATAACCCTGCACACCAACTCCCCATGAGACCCTCGATCCCCCGGTGGGGCCGGCT
CCCCCGCCACCGCCCCGACATCGGGTCGATGGACCAGGTGCTCCAGGTGCTCGAAAACGCCAATG
TGTTGCTGCACCCCCTCACCTCCTCCCAGCACCACCACCTCCACTTGACCGCCACCACCGCCGCC
CGGCTCACCCACAACTTTGGCCAGAAGGCAGTGCGCCACCAGGCG
Found at i:20964 original size:23 final size:23
Alignment explanation
Indices: 20933--20993 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
20923 TTCCATTAGT
* *
20933 TCTCTACCTTTCCACTTCCCACC
1 TCTCCACCTCTCCACTTCCCACC
*
20956 TCTCCACCTCTCCATCTTTCCACC
1 TCTCCACCTCTCCA-CTTCCCACC
*
20980 -CTCCATCTCTCCAC
1 TCTCCACCTCTCCAC
20994 CTCCAGCCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 1 0.03
23 24 0.73
24 8 0.24
ACGTcount: A:0.13, C:0.54, G:0.00, T:0.33
Consensus pattern (23 bp):
TCTCCACCTCTCCACTTCCCACC
Left flanking sequence: Indices 20433 -- 20932
GTCTTCTCTCTTACCAGGTCTCGATAGAGATCTTCAGCGACAGGTGTCATCCACCCAAATGCTTC
GATTACCCTTTTGGGTTATTGGATACATGCCACCATGTCCCCCGAGCGCTTTATTTTCCGGTGAC
GTTTTGGGATAGTCACCTGATGCATCGTGGCGTGGTGGTGTTCGCCGGCTGTCTGTGTCTGTCAC
GCTTGGCGCACCAACCCATTGGCCATTGCACTACCGCCATTCTAATTTTAGTGTATGCCATCTAA
TGATTAATAGTCGAATCAATGAAGAACAGTGGAAACGAGTGTAGCAAACGAGTGTAGCAAACGAG
TGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGGAACGAAGGTAGTGGAACGAAGGTAGCGGAA
ACAAGTAGCGAATCTAATCATCTAGAACCAATCTTCAATTTTACGAACAGTCAATAGCCTGCTTC
TGAGACAATACAAACAACCACACAACTTCAAAATCTTCCATTAGT
Right flanking sequence: Indices 20994 -- 21493
CTCCAGCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAATCAGCA
CACGACAGAGCCCGCCAATTCTTCCCAACACCAATTGACCCACCACTACCACCACTACCACCACT
ACCACCACCACCACTACCACTACAATTACCACCACCACTACCTCCCCTCACCCCCCTCCTTTTCT
CTCGCCTCCTCCTCTTCTCTCCCCCTCTCCTCTTCTCACTTCTCCCCTCCTCTACCCTCCTCCCA
CCGCATTTTTCTCATAACCCTGCACACCAACTCCCCATGAGACCCTCGATCCCCCGGTGGGGCCG
GCTCCCCCGCCACCGCCCCGACATCGGGTCGATGGACCAGGTGCTCCAGGTGCTCGAAAACGCCA
ATGTGTTGCTGCACCCCCTCACCTCCTCCCAGCACCACCACCTCCACTTGACCGCCACCACCGCC
GCCCGGCTCACCCACAACTTTGGCCAGAAGGCAGTGCGCCACCAG
Found at i:20985 original size:15 final size:15
Alignment explanation
Indices: 20955--20998 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
20945 CACTTCCCAC
20955 CTCTCCACCTCTCCAT
1 CTCTCCACC-CTCCAT
*
20971 CTTTCCACCCTCCAT
1 CTCTCCACCCTCCAT
20986 CTCTCCA-CCTCCA
1 CTCTCCACCCTCCA
20999 GCCTCTTCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 6 0.23
15 12 0.46
16 8 0.31
ACGTcount: A:0.14, C:0.57, G:0.00, T:0.30
Consensus pattern (15 bp):
CTCTCCACCCTCCAT
Left flanking sequence: Indices 20455 -- 20954
GATAGAGATCTTCAGCGACAGGTGTCATCCACCCAAATGCTTCGATTACCCTTTTGGGTTATTGG
ATACATGCCACCATGTCCCCCGAGCGCTTTATTTTCCGGTGACGTTTTGGGATAGTCACCTGATG
CATCGTGGCGTGGTGGTGTTCGCCGGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGG
CCATTGCACTACCGCCATTCTAATTTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGA
AGAACAGTGGAAACGAGTGTAGCAAACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAA
GCAAAGGTAGTGGAACGAAGGTAGTGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATCATC
TAGAACCAATCTTCAATTTTACGAACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACCACA
CAACTTCAAAATCTTCCATTAGTTCTCTACCTTTCCACTTCCCAC
Right flanking sequence: Indices 20999 -- 21498
GCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAATCAGCACACGA
CAGAGCCCGCCAATTCTTCCCAACACCAATTGACCCACCACTACCACCACTACCACCACTACCAC
CACCACCACTACCACTACAATTACCACCACCACTACCTCCCCTCACCCCCCTCCTTTTCTCTCGC
CTCCTCCTCTTCTCTCCCCCTCTCCTCTTCTCACTTCTCCCCTCCTCTACCCTCCTCCCACCGCA
TTTTTCTCATAACCCTGCACACCAACTCCCCATGAGACCCTCGATCCCCCGGTGGGGCCGGCTCC
CCCGCCACCGCCCCGACATCGGGTCGATGGACCAGGTGCTCCAGGTGCTCGAAAACGCCAATGTG
TTGCTGCACCCCCTCACCTCCTCCCAGCACCACCACCTCCACTTGACCGCCACCACCGCCGCCCG
GCTCACCCACAACTTTGGCCAGAAGGCAGTGCGCCACCAGGCGCT
Found at i:21109 original size:6 final size:6
Alignment explanation
Indices: 21109--21165 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
21099 CACCACTACC
* * * * * * *
21109 ACCACT ACCACC ACTACC ACCACC ACCACT ACCACT ACAATT ACCACC
1 ACCACT ACCACT ACCACT ACCACT ACCACT ACCACT ACCACT ACCACT
21157 ACCACT ACC
1 ACCACT ACC
21166 TCCCCTCACC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.35, C:0.53, G:0.00, T:0.12
Consensus pattern (6 bp):
ACCACT
Left flanking sequence: Indices 20609 -- 21108
GGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACCGCCATTCTAAT
TTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAACGAGTGTAGCA
AACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGGAACGAAGGTAG
TGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATCATCTAGAACCAATCTTCAATTTTACGA
ACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACCACACAACTTCAAAATCTTCCATTAGTT
CTCTACCTTTCCACTTCCCACCTCTCCACCTCTCCATCTTTCCACCCTCCATCTCTCCACCTCCA
GCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAATCAGCACACGA
CAGAGCCCGCCAATTCTTCCCAACACCAATTGACCCACCACTACC
Right flanking sequence: Indices 21166 -- 21665
TCCCCTCACCCCCCTCCTTTTCTCTCGCCTCCTCCTCTTCTCTCCCCCTCTCCTCTTCTCACTTC
TCCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCATAACCCTGCACACCAACTCCCCATGAGA
CCCTCGATCCCCCGGTGGGGCCGGCTCCCCCGCCACCGCCCCGACATCGGGTCGATGGACCAGGT
GCTCCAGGTGCTCGAAAACGCCAATGTGTTGCTGCACCCCCTCACCTCCTCCCAGCACCACCACC
TCCACTTGACCGCCACCACCGCCGCCCGGCTCACCCACAACTTTGGCCAGAAGGCAGTGCGCCAC
CAGGCGCTCCGGTGGTTGGCGGAGACCGAGGCGGTGCTGGCCCACCCCTACCTCATGGCCGGCTG
GCCCTCGGTGTACCACCAGGTCGTCGACCACATGGTGCACGCGGTGGTGCGCCTGGGGTGGTGGC
ACCGCTACAGCTTGCACGGCCAGCTCGACCCGTACCAGCTGGTGG
Found at i:21118 original size:15 final size:15
Alignment explanation
Indices: 21109--21146 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
21099 CACCACTACC
21109 ACCACTACCACCACT
1 ACCACTACCACCACT
*
21124 ACCACCACCACCACT
1 ACCACTACCACCACT
21139 ACCACTAC
1 ACCACTAC
21147 AATTACCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.34, C:0.55, G:0.00, T:0.11
Consensus pattern (15 bp):
ACCACTACCACCACT
Left flanking sequence: Indices 20609 -- 21108
GGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACCGCCATTCTAAT
TTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAACGAGTGTAGCA
AACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGGAACGAAGGTAG
TGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATCATCTAGAACCAATCTTCAATTTTACGA
ACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACCACACAACTTCAAAATCTTCCATTAGTT
CTCTACCTTTCCACTTCCCACCTCTCCACCTCTCCATCTTTCCACCCTCCATCTCTCCACCTCCA
GCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAATCAGCACACGA
CAGAGCCCGCCAATTCTTCCCAACACCAATTGACCCACCACTACC
Right flanking sequence: Indices 21147 -- 21646
AATTACCACCACCACTACCTCCCCTCACCCCCCTCCTTTTCTCTCGCCTCCTCCTCTTCTCTCCC
CCTCTCCTCTTCTCACTTCTCCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCATAACCCTGC
ACACCAACTCCCCATGAGACCCTCGATCCCCCGGTGGGGCCGGCTCCCCCGCCACCGCCCCGACA
TCGGGTCGATGGACCAGGTGCTCCAGGTGCTCGAAAACGCCAATGTGTTGCTGCACCCCCTCACC
TCCTCCCAGCACCACCACCTCCACTTGACCGCCACCACCGCCGCCCGGCTCACCCACAACTTTGG
CCAGAAGGCAGTGCGCCACCAGGCGCTCCGGTGGTTGGCGGAGACCGAGGCGGTGCTGGCCCACC
CCTACCTCATGGCCGGCTGGCCCTCGGTGTACCACCAGGTCGTCGACCACATGGTGCACGCGGTG
GTGCGCCTGGGGTGGTGGCACCGCTACAGCTTGCACGGCCAGCTC
Found at i:21119 original size:18 final size:18
Alignment explanation
Indices: 21098--21165 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
21088 ACCAATTGAC
*
21098 CCACCACTACCACCACTA
1 CCACCACTACCACCACCA
21116 CCACCACTACCACCACCA
1 CCACCACTACCACCACCA
* **
21134 CCACTACCACTACAATTACCA
1 -C-C-ACCACTACCACCACCA
21155 CCACCACTACC
1 CCACCACTACC
21166 TCCCCTCACC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
18 25 0.60
19 2 0.05
20 2 0.05
21 13 0.31
ACGTcount: A:0.34, C:0.54, G:0.00, T:0.12
Consensus pattern (18 bp):
CCACCACTACCACCACCA
Left flanking sequence: Indices 20598 -- 21097
TGGTGTTCGCCGGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACC
GCCATTCTAATTTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAA
CGAGTGTAGCAAACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGG
AACGAAGGTAGTGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATCATCTAGAACCAATCTT
CAATTTTACGAACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACCACACAACTTCAAAATC
TTCCATTAGTTCTCTACCTTTCCACTTCCCACCTCTCCACCTCTCCATCTTTCCACCCTCCATCT
CTCCACCTCCAGCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAA
TCAGCACACGACAGAGCCCGCCAATTCTTCCCAACACCAATTGAC
Right flanking sequence: Indices 21166 -- 21665
TCCCCTCACCCCCCTCCTTTTCTCTCGCCTCCTCCTCTTCTCTCCCCCTCTCCTCTTCTCACTTC
TCCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCATAACCCTGCACACCAACTCCCCATGAGA
CCCTCGATCCCCCGGTGGGGCCGGCTCCCCCGCCACCGCCCCGACATCGGGTCGATGGACCAGGT
GCTCCAGGTGCTCGAAAACGCCAATGTGTTGCTGCACCCCCTCACCTCCTCCCAGCACCACCACC
TCCACTTGACCGCCACCACCGCCGCCCGGCTCACCCACAACTTTGGCCAGAAGGCAGTGCGCCAC
CAGGCGCTCCGGTGGTTGGCGGAGACCGAGGCGGTGCTGGCCCACCCCTACCTCATGGCCGGCTG
GCCCTCGGTGTACCACCAGGTCGTCGACCACATGGTGCACGCGGTGGTGCGCCTGGGGTGGTGGC
ACCGCTACAGCTTGCACGGCCAGCTCGACCCGTACCAGCTGGTGG
Found at i:21133 original size:24 final size:24
Alignment explanation
Indices: 21100--21165 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
21090 CAATTGACCC
* *
21100 ACCACTACCACCACTACCACCACT
1 ACCACCACCACCACTACCACCACA
*
21124 ACCACCACCACCACTACCACTACA
1 ACCACCACCACCACTACCACCACA
**
21148 ATTACCACCACCACTACC
1 ACCACCACCACCACTACC
21166 TCCCCTCACC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.35, C:0.53, G:0.00, T:0.12
Consensus pattern (24 bp):
ACCACCACCACCACTACCACCACA
Left flanking sequence: Indices 20600 -- 21099
GTGTTCGCCGGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACCGC
CATTCTAATTTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAACG
AGTGTAGCAAACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGGAA
CGAAGGTAGTGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATCATCTAGAACCAATCTTCA
ATTTTACGAACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACCACACAACTTCAAAATCTT
CCATTAGTTCTCTACCTTTCCACTTCCCACCTCTCCACCTCTCCATCTTTCCACCCTCCATCTCT
CCACCTCCAGCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAATC
AGCACACGACAGAGCCCGCCAATTCTTCCCAACACCAATTGACCC
Right flanking sequence: Indices 21166 -- 21665
TCCCCTCACCCCCCTCCTTTTCTCTCGCCTCCTCCTCTTCTCTCCCCCTCTCCTCTTCTCACTTC
TCCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCATAACCCTGCACACCAACTCCCCATGAGA
CCCTCGATCCCCCGGTGGGGCCGGCTCCCCCGCCACCGCCCCGACATCGGGTCGATGGACCAGGT
GCTCCAGGTGCTCGAAAACGCCAATGTGTTGCTGCACCCCCTCACCTCCTCCCAGCACCACCACC
TCCACTTGACCGCCACCACCGCCGCCCGGCTCACCCACAACTTTGGCCAGAAGGCAGTGCGCCAC
CAGGCGCTCCGGTGGTTGGCGGAGACCGAGGCGGTGCTGGCCCACCCCTACCTCATGGCCGGCTG
GCCCTCGGTGTACCACCAGGTCGTCGACCACATGGTGCACGCGGTGGTGCGCCTGGGGTGGTGGC
ACCGCTACAGCTTGCACGGCCAGCTCGACCCGTACCAGCTGGTGG
Found at i:21143 original size:9 final size:9
Alignment explanation
Indices: 21098--21137 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
21088 ACCAATTGAC
21098 CCACCACTA
1 CCACCACTA
21107 CCACCACTA
1 CCACCACTA
21116 CCACCACTA
1 CCACCACTA
*
21125 CCACCACCA
1 CCACCACTA
21134 CCAC
1 CCAC
21138 TACCACTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.33, C:0.60, G:0.00, T:0.07
Consensus pattern (9 bp):
CCACCACTA
Left flanking sequence: Indices 20598 -- 21097
TGGTGTTCGCCGGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACC
GCCATTCTAATTTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAA
CGAGTGTAGCAAACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGG
AACGAAGGTAGTGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATCATCTAGAACCAATCTT
CAATTTTACGAACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACCACACAACTTCAAAATC
TTCCATTAGTTCTCTACCTTTCCACTTCCCACCTCTCCACCTCTCCATCTTTCCACCCTCCATCT
CTCCACCTCCAGCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAA
TCAGCACACGACAGAGCCCGCCAATTCTTCCCAACACCAATTGAC
Right flanking sequence: Indices 21138 -- 21637
TACCACTACAATTACCACCACCACTACCTCCCCTCACCCCCCTCCTTTTCTCTCGCCTCCTCCTC
TTCTCTCCCCCTCTCCTCTTCTCACTTCTCCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCA
TAACCCTGCACACCAACTCCCCATGAGACCCTCGATCCCCCGGTGGGGCCGGCTCCCCCGCCACC
GCCCCGACATCGGGTCGATGGACCAGGTGCTCCAGGTGCTCGAAAACGCCAATGTGTTGCTGCAC
CCCCTCACCTCCTCCCAGCACCACCACCTCCACTTGACCGCCACCACCGCCGCCCGGCTCACCCA
CAACTTTGGCCAGAAGGCAGTGCGCCACCAGGCGCTCCGGTGGTTGGCGGAGACCGAGGCGGTGC
TGGCCCACCCCTACCTCATGGCCGGCTGGCCCTCGGTGTACCACCAGGTCGTCGACCACATGGTG
CACGCGGTGGTGCGCCTGGGGTGGTGGCACCGCTACAGCTTGCAC
Found at i:21161 original size:3 final size:3
Alignment explanation
Indices: 21098--21143 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
21088 ACCAATTGAC
* * * *
21098 CCA CCA CTA CCA CCA CTA CCA CCA CTA CCA CCA CCA CCA CTA CCA C
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA C
21144 TACAATTACC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.59, G:0.00, T:0.09
Consensus pattern (3 bp):
CCA
Left flanking sequence: Indices 20598 -- 21097
TGGTGTTCGCCGGCTGTCTGTGTCTGTCACGCTTGGCGCACCAACCCATTGGCCATTGCACTACC
GCCATTCTAATTTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAA
CGAGTGTAGCAAACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGG
AACGAAGGTAGTGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATCATCTAGAACCAATCTT
CAATTTTACGAACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACCACACAACTTCAAAATC
TTCCATTAGTTCTCTACCTTTCCACTTCCCACCTCTCCACCTCTCCATCTTTCCACCCTCCATCT
CTCCACCTCCAGCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAA
TCAGCACACGACAGAGCCCGCCAATTCTTCCCAACACCAATTGAC
Right flanking sequence: Indices 21144 -- 21643
TACAATTACCACCACCACTACCTCCCCTCACCCCCCTCCTTTTCTCTCGCCTCCTCCTCTTCTCT
CCCCCTCTCCTCTTCTCACTTCTCCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCATAACCC
TGCACACCAACTCCCCATGAGACCCTCGATCCCCCGGTGGGGCCGGCTCCCCCGCCACCGCCCCG
ACATCGGGTCGATGGACCAGGTGCTCCAGGTGCTCGAAAACGCCAATGTGTTGCTGCACCCCCTC
ACCTCCTCCCAGCACCACCACCTCCACTTGACCGCCACCACCGCCGCCCGGCTCACCCACAACTT
TGGCCAGAAGGCAGTGCGCCACCAGGCGCTCCGGTGGTTGGCGGAGACCGAGGCGGTGCTGGCCC
ACCCCTACCTCATGGCCGGCTGGCCCTCGGTGTACCACCAGGTCGTCGACCACATGGTGCACGCG
GTGGTGCGCCTGGGGTGGTGGCACCGCTACAGCTTGCACGGCCAG
Found at i:21218 original size:18 final size:18
Alignment explanation
Indices: 21174--21225 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
21164 CCTCCCCTCA
*
21174 CCCCC-CTCCTTTTCTCT
1 CCCCCTCTCCTCTTCTCT
*
21191 -CGCCTCCTCCTCTTCTCT
1 CCCCCT-CTCCTCTTCTCT
21209 CCCCCTCTCCTCTTCTC
1 CCCCCTCTCCTCTTCTC
21226 ACTTCTCCCC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 3 0.10
18 22 0.76
19 4 0.14
ACGTcount: A:0.00, C:0.60, G:0.02, T:0.38
Consensus pattern (18 bp):
CCCCCTCTCCTCTTCTCT
Left flanking sequence: Indices 20674 -- 21173
TTTAGTGTATGCCATCTAATGATTAATAGTCGAATCAATGAAGAACAGTGGAAACGAGTGTAGCA
AACGAGTGTAGCAAACGAGTGTAGCAAACGAATGTAGCGAAGCAAAGGTAGTGGAACGAAGGTAG
TGGAACGAAGGTAGCGGAAACAAGTAGCGAATCTAATCATCTAGAACCAATCTTCAATTTTACGA
ACAGTCAATAGCCTGCTTCTGAGACAATACAAACAACCACACAACTTCAAAATCTTCCATTAGTT
CTCTACCTTTCCACTTCCCACCTCTCCACCTCTCCATCTTTCCACCCTCCATCTCTCCACCTCCA
GCCTCTTCTCCAAACCCCGACGTCAGATCCACCATTGTTCCTCAGCCCACAAAATCAGCACACGA
CAGAGCCCGCCAATTCTTCCCAACACCAATTGACCCACCACTACCACCACTACCACCACTACCAC
CACCACCACTACCACTACAATTACCACCACCACTACCTCCCCTCA
Right flanking sequence: Indices 21226 -- 21725
ACTTCTCCCCTCCTCTACCCTCCTCCCACCGCATTTTTCTCATAACCCTGCACACCAACTCCCCA
TGAGACCCTCGATCCCCCGGTGGGGCCGGCTCCCCCGCCACCGCCCCGACATCGGGTCGATGGAC
CAGGTGCTCCAGGTGCTCGAAAACGCCAATGTGTTGCTGCACCCCCTCACCTCCTCCCAGCACCA
CCACCTCCACTTGACCGCCACCACCGCCGCCCGGCTCACCCACAACTTTGGCCAGAAGGCAGTGC
GCCACCAGGCGCTCCGGTGGTTGGCGGAGACCGAGGCGGTGCTGGCCCACCCCTACCTCATGGCC
GGCTGGCCCTCGGTGTACCACCAGGTCGTCGACCACATGGTGCACGCGGTGGTGCGCCTGGGGTG
GTGGCACCGCTACAGCTTGCACGGCCAGCTCGACCCGTACCAGCTGGTGGCGCTGGTGGTGTTGG
CGGGCGACGAGTGTCCCGAGCTTGCGCCCCAGCTCATCCGCGGGT
Found at i:22353 original size:9 final size:9
Alignment explanation
Indices: 22325--22366 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
22315 CTCCAAGACA
22325 TCTTCCTCC
1 TCTTCCTCC
*
22334 TCTT-C-GC
1 TCTTCCTCC
22341 -CTTCCTCC
1 TCTTCCTCC
22349 TCTTCCTCC
1 TCTTCCTCC
22358 TCTTCCTCC
1 TCTTCCTCC
22367 AACCAGTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
6 3 0.11
7 2 0.07
8 2 0.07
9 21 0.75
ACGTcount: A:0.00, C:0.55, G:0.02, T:0.43
Consensus pattern (9 bp):
TCTTCCTCC
Left flanking sequence: Indices 21825 -- 22324
ACCCGCTTGCGATGCCGCACCACACGTTGTGGGAGGACCCGCACCCGACGACCCCGGTGGCGTAC
ATGGTGGCGGACCCGCGGGTGGTGGCGGCGACCACGGCGCCCGGCGGGCGCGGGATGGCGCTGAC
GGACCAGGTGGTGGCCATCATGAGCGCCCAGCAGGCGGAGGGGCGGCTTGCGGTGGACGTGGTGG
TGCGCAAGTTCTTGCTCAAGATCATGGAGGCGGGTCCTCCCGCGGAGGTGCCGGAGGTGCACGCA
CGGGGGCCGTCGCTGGAGGCGGAGTACTGGGAGCGCGGGTGGAGCGGGCCGAGCCGCGGCCGGGC
TGAGGAGTGTCGCCAGTGTGATGGGGACGAGGCGTTTGAGGGAAAGGCGCTGTCGAAGGGGCCAA
AGGGGCTGTCTGTGGTGTCTGAGAGCTCTGGGTTTGCGTCTGGAGCCTCTGGGCGCACCCCCGGA
GGTGCTCCTCCATTGGCTTTCTCCTCTGGGGTATCCTCCAAGACA
Right flanking sequence: Indices 22367 -- 22866
AACCAGTCTTCCCCCTCCACCCCCTCCACCCCCACCCCCTCCCCCTCTCACGAAGACCGGGCGCT
CTCCCAAGCCTCCCAGGCCACCCTCCGCTTCGGCGACGGCCAGCTCTTCCACCCCAACCGCCAGA
GCACCCCGGAGCCCGGCCGCGACTACGGGATGCTCTCGTATGACCTCCTCGTGATGCGGTACCTC
CCCGGGGCCGACCCCGAGTTCTTGGCGAAGTTCAAGACCGTCGCCGCCTTCCGGTCGCAGCTCCA
CACCCAGTTGCTCTATGCCAACGACCCGACACAGCTGGAGGACGCCCAGCTGCCCTACCAGCAGG
CGGTGGCCGCGCTCAGGCTCGCAGACCTCCCGGAAACCCCGCTCTTGAGCGCGTTCTCCGCCGAC
GACAACAAGATCGTCGGGCTCTACGTGGGGGCGTTCGACCGGGTGTTTGGCCGGATGTACGCGCA
CGACCCGCGGGCGGCCGAGGCGTGGATGTTTGCTGCGGTGGCTGC
Found at i:23117 original size:20 final size:20
Alignment explanation
Indices: 23091--23146 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
23081 GGGTAGTGGT
*
23091 TAGCTGGTTAACTAGGCTAAG
1 TAGCTGGTTAGCTAGGCT-AG
*
23112 -AGCTGGTTAGCTAGGCTCG
1 TAGCTGGTTAGCTAGGCTAG
23131 TAGCTGGTTAGCTAGG
1 TAGCTGGTTAGCTAGG
23147 AGACAGCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 1 0.03
20 31 0.97
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (20 bp):
TAGCTGGTTAGCTAGGCTAG
Left flanking sequence: Indices 22591 -- 23090
GTTCAAGACCGTCGCCGCCTTCCGGTCGCAGCTCCACACCCAGTTGCTCTATGCCAACGACCCGA
CACAGCTGGAGGACGCCCAGCTGCCCTACCAGCAGGCGGTGGCCGCGCTCAGGCTCGCAGACCTC
CCGGAAACCCCGCTCTTGAGCGCGTTCTCCGCCGACGACAACAAGATCGTCGGGCTCTACGTGGG
GGCGTTCGACCGGGTGTTTGGCCGGATGTACGCGCACGACCCGCGGGCGGCCGAGGCGTGGATGT
TTGCTGCGGTGGCTGCCCACGACGTCGACCCGATGTTGGTGACGGATATCGGGGTTTCGGAGGCG
GTGGCGCATTTCCGCCACTACGTGCTTGGGCCACGGGTCCAGGAGACGTGGTTCCTGGCGCTGCC
TGCGTGGGCGGAGCTGCCGGGACAGTCGCGGGACGAATTGGCCGACGAGGTGATGAACCTTATTA
ATTAGCATTAGCATGGTGGCTGGGTGCCAGTGACTGGGTAGTGGT
Right flanking sequence: Indices 23147 -- 23646
AGACAGCTTTGGCGTTGGTAACTGGTCTCTTCCGCACTGGTAGCTGGTCTCTTGCACACCGGCTG
GTCTTTTGGCTTGCATGGCGGTTGCACCTGCGTTGTTGTATATAGAATTAAAAGCAGGATGGTGA
CAGTACTAAAATGTGGTGGTGACGGGAACAAAGCTGAAAAAATTCAAACTTTAGCTTTTATTTTT
TACTTGGTTGCAAAAGTCGCGGTATCGCTGGGGACGGACCATCTTATTTTTTACCTCCGATGGTC
CCCGCCTTCCGTGCATAATGACAGGTTCAACGAGATCTGGTCTCAGGGCTCAACCGATGGCGATA
AAATAAAGAGCGCCTTAACGTGTGCGTCGAGATTTAATTTAGAGACAGGTGCTAACTTGGTTGTT
TCTGGAGGATGGCCTCTGCGTCTGATTCTTTGTCGCGTGAATAGTACCAAGTTATATTAATACAT
ATCCACGTTATATTACTAGATATCTACGTTACATTAATACACATC
Found at i:23611 original size:21 final size:21
Alignment explanation
Indices: 23587--23685 Score: 94
Period size: 21 Copynumber: 4.8 Consensus size: 21
23577 ATAGTACCAA
23587 GTTATATTAATACATATCCAC
1 GTTATATTAATACATATCCAC
* * *
23608 GTTATATTACTAGATATCTAC
1 GTTATATTAATACATATCCAC
* * *
23629 GTTACATTAATACACATCTAC
1 GTTATATTAATACATATCCAC
* * *
23650 GTTAAACTAATAGATA-CCGAC
1 GTTATATTAATACATATCC-AC
23671 G-TATATTAATACATA
1 GTTATATTAATACATA
23686 ACACCCCAGT
Statistics
Matches: 62, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
20 12 0.19
21 50 0.81
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.35
Consensus pattern (21 bp):
GTTATATTAATACATATCCAC
Left flanking sequence: Indices 23087 -- 23586
TGGTTAGCTGGTTAACTAGGCTAAGAGCTGGTTAGCTAGGCTCGTAGCTGGTTAGCTAGGAGACA
GCTTTGGCGTTGGTAACTGGTCTCTTCCGCACTGGTAGCTGGTCTCTTGCACACCGGCTGGTCTT
TTGGCTTGCATGGCGGTTGCACCTGCGTTGTTGTATATAGAATTAAAAGCAGGATGGTGACAGTA
CTAAAATGTGGTGGTGACGGGAACAAAGCTGAAAAAATTCAAACTTTAGCTTTTATTTTTTACTT
GGTTGCAAAAGTCGCGGTATCGCTGGGGACGGACCATCTTATTTTTTACCTCCGATGGTCCCCGC
CTTCCGTGCATAATGACAGGTTCAACGAGATCTGGTCTCAGGGCTCAACCGATGGCGATAAAATA
AAGAGCGCCTTAACGTGTGCGTCGAGATTTAATTTAGAGACAGGTGCTAACTTGGTTGTTTCTGG
AGGATGGCCTCTGCGTCTGATTCTTTGTCGCGTGAATAGTACCAA
Right flanking sequence: Indices 23686 -- 24185
ACACCCCAGTGCCAATTCTAAAATCTATTAACACCAACCACTCACACTTTTACCACTCACTACTT
TTTCCCTCACTACCTTACCTTCCATTAATCATTATGCTATGCTAGTTCGCGGCGACGGCGTTCTT
CGCCAACCACTGCCCGAGATCGCCGCCGCGGCTGGCCCCCTCCAAGATCATCTCCGGCTTGTACT
TGGCCTCGGCGATGTACGCCTCCACCACCGCCCGCTTGTTGTCCATCAGCTCGTCCACGCAAAAG
TGGAACTCCGACGGCACCATCGGCAACAACACCTTCTTATACGTGGCCATGTTGTCGCTGAAGGG
CTGCCCGGTCTTGCAGTACTCGTTCAGGCACTGGGCTCGCCCACACCCCTTGGAGAGCTGTAACA
CGTACCGCCGCTCGATCCGGTTGCGCAACTTGGCCCCGTCGGGGTCGTGCTGGGTCAGGTAGAGC
GGGCCAAAGCAGTGGTCACAGAGCCCCATGTTCCCGCCAGCGCGG
Found at i:23664 original size:42 final size:42
Alignment explanation
Indices: 23587--23683 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
23577 ATAGTACCAA
* * * * * *
23587 GTTATATTAATACATATCCACGTTATATTACTAGATATCTAC
1 GTTATATTAATACACATCCACGTTAAACTAATAGATACCGAC
* *
23629 GTTACATTAATACACATCTACGTTAAACTAATAGATACCGAC
1 GTTATATTAATACACATCCACGTTAAACTAATAGATACCGAC
23671 G-TATATTAATACA
1 GTTATATTAATACA
23684 TAACACCCCA
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 11 0.24
42 35 0.76
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (42 bp):
GTTATATTAATACACATCCACGTTAAACTAATAGATACCGAC
Left flanking sequence: Indices 23087 -- 23586
TGGTTAGCTGGTTAACTAGGCTAAGAGCTGGTTAGCTAGGCTCGTAGCTGGTTAGCTAGGAGACA
GCTTTGGCGTTGGTAACTGGTCTCTTCCGCACTGGTAGCTGGTCTCTTGCACACCGGCTGGTCTT
TTGGCTTGCATGGCGGTTGCACCTGCGTTGTTGTATATAGAATTAAAAGCAGGATGGTGACAGTA
CTAAAATGTGGTGGTGACGGGAACAAAGCTGAAAAAATTCAAACTTTAGCTTTTATTTTTTACTT
GGTTGCAAAAGTCGCGGTATCGCTGGGGACGGACCATCTTATTTTTTACCTCCGATGGTCCCCGC
CTTCCGTGCATAATGACAGGTTCAACGAGATCTGGTCTCAGGGCTCAACCGATGGCGATAAAATA
AAGAGCGCCTTAACGTGTGCGTCGAGATTTAATTTAGAGACAGGTGCTAACTTGGTTGTTTCTGG
AGGATGGCCTCTGCGTCTGATTCTTTGTCGCGTGAATAGTACCAA
Right flanking sequence: Indices 23684 -- 24183
TAACACCCCAGTGCCAATTCTAAAATCTATTAACACCAACCACTCACACTTTTACCACTCACTAC
TTTTTCCCTCACTACCTTACCTTCCATTAATCATTATGCTATGCTAGTTCGCGGCGACGGCGTTC
TTCGCCAACCACTGCCCGAGATCGCCGCCGCGGCTGGCCCCCTCCAAGATCATCTCCGGCTTGTA
CTTGGCCTCGGCGATGTACGCCTCCACCACCGCCCGCTTGTTGTCCATCAGCTCGTCCACGCAAA
AGTGGAACTCCGACGGCACCATCGGCAACAACACCTTCTTATACGTGGCCATGTTGTCGCTGAAG
GGCTGCCCGGTCTTGCAGTACTCGTTCAGGCACTGGGCTCGCCCACACCCCTTGGAGAGCTGTAA
CACGTACCGCCGCTCGATCCGGTTGCGCAACTTGGCCCCGTCGGGGTCGTGCTGGGTCAGGTAGA
GCGGGCCAAAGCAGTGGTCACAGAGCCCCATGTTCCCGCCAGCGC
Found at i:23752 original size:16 final size:16
Alignment explanation
Indices: 23722--23763 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
23712 ATTAACACCA
23722 ACCACTCAC-ACTTTT
1 ACCACTCACTACTTTT
23737 ACCACTCACTACTTTT
1 ACCACTCACTACTTTT
*
23753 TCC-CTCACTAC
1 ACCACTCACTAC
23764 CTTACCTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 17 0.68
16 8 0.32
ACGTcount: A:0.24, C:0.43, G:0.00, T:0.33
Consensus pattern (16 bp):
ACCACTCACTACTTTT
Left flanking sequence: Indices 23222 -- 23721
TTGCATGGCGGTTGCACCTGCGTTGTTGTATATAGAATTAAAAGCAGGATGGTGACAGTACTAAA
ATGTGGTGGTGACGGGAACAAAGCTGAAAAAATTCAAACTTTAGCTTTTATTTTTTACTTGGTTG
CAAAAGTCGCGGTATCGCTGGGGACGGACCATCTTATTTTTTACCTCCGATGGTCCCCGCCTTCC
GTGCATAATGACAGGTTCAACGAGATCTGGTCTCAGGGCTCAACCGATGGCGATAAAATAAAGAG
CGCCTTAACGTGTGCGTCGAGATTTAATTTAGAGACAGGTGCTAACTTGGTTGTTTCTGGAGGAT
GGCCTCTGCGTCTGATTCTTTGTCGCGTGAATAGTACCAAGTTATATTAATACATATCCACGTTA
TATTACTAGATATCTACGTTACATTAATACACATCTACGTTAAACTAATAGATACCGACGTATAT
TAATACATAACACCCCAGTGCCAATTCTAAAATCTATTAACACCA
Right flanking sequence: Indices 23764 -- 24263
CTTACCTTCCATTAATCATTATGCTATGCTAGTTCGCGGCGACGGCGTTCTTCGCCAACCACTGC
CCGAGATCGCCGCCGCGGCTGGCCCCCTCCAAGATCATCTCCGGCTTGTACTTGGCCTCGGCGAT
GTACGCCTCCACCACCGCCCGCTTGTTGTCCATCAGCTCGTCCACGCAAAAGTGGAACTCCGACG
GCACCATCGGCAACAACACCTTCTTATACGTGGCCATGTTGTCGCTGAAGGGCTGCCCGGTCTTG
CAGTACTCGTTCAGGCACTGGGCTCGCCCACACCCCTTGGAGAGCTGTAACACGTACCGCCGCTC
GATCCGGTTGCGCAACTTGGCCCCGTCGGGGTCGTGCTGGGTCAGGTAGAGCGGGCCAAAGCAGT
GGTCACAGAGCCCCATGTTCCCGCCAGCGCGGTTGATGCAGAGCAGGTTCAGACACCGGGTGAAC
CCCGCCACCTGGCTCTGCTGCTTGTTCAACTCGTGGTGCTTGACG
Found at i:25954 original size:11 final size:11
Alignment explanation
Indices: 25927--25973 Score: 76
Period size: 11 Copynumber: 4.2 Consensus size: 11
25917 CACATTTTGG
*
25927 CCCACCAGAGCC
1 CCCACCAGTG-C
25939 CCCACCAGTGC
1 CCCACCAGTGC
25950 CCCACCAGTGC
1 CCCACCAGTGC
25961 CCCACCAGTGC
1 CCCACCAGTGC
25972 CC
1 CC
25974 TAGAACAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 25 0.74
12 9 0.26
ACGTcount: A:0.19, C:0.57, G:0.17, T:0.06
Consensus pattern (11 bp):
CCCACCAGTGC
Left flanking sequence: Indices 25427 -- 25926
CGAGAGGTGCACCTGGGAGTGACAGCACCGGAAGATTAGCGGGTGGGGAAGCTGGTCTTCGGGGA
TGCTCTGCACGAGCTGCTCGAGAATCCGCTGGGGCAACACCACCTTGTCGGTGTAGCTGTTGCCC
ACGGCCTCGATGTCGACGGGGATCTCCATGGGTAGTGGTAGTACGAGTTCTGGCGATGGGTAAAA
GTAAGCGGTGGGGCTCGTAACCAGCGAACCCCGATGAAAGGCCGGTGGCGCCACAACCGCAGCAA
TGGAATGGAATGGAAGACGGGGGTTTGGAGGCGGTCTGGGCGGTCGTGGGCGGTGGCGGTTGGTG
TGGACGTGTGGCGAAGGCGTGGAATAGGCGAGAAGTGTAGGATTTGGGAGGTGTCGTGGTTTACT
GTGGCGTAGGCAGGGGTCGGGACATGTCATAACAACGATCTGTCTGTACGTGTGGGTACGTATGG
GGTATGACTACCGAAAACCCCGGTGTAGAGATGTTCACATTTTGG
Right flanking sequence: Indices 25974 -- 26473
TAGAACAAACACAAAGGGACTGTTGCTACTCGGACACTGTTGCTACTCTTACACACCCACCACCT
TTCTACTCTGGTACCACCTCTTCTGACTCTGGCAGGCGTCCACAGCAACCCTTAGCCGTACCTGG
AAAAACCCGGGGTTCGCCAGCAGGTCGACGAGAGACAGCCAACGAGTATCGAAAGGACCCCCACG
TCCCGGGGGCACGACCATGCATACACCACCACCACCGCAAGTAAACCCGATTTAGCAACCATGTC
GTGGGTTCACCACGCTACACCACTATCTCCGTAATTAGCCCAATCCGGTAAGACCGGGGTTCGCG
ACACCGTCCCATTACACCACCGATTACATCACTGGCCAAGCAGACCAGTAGCACAATTACACCGC
CATTTCCCTGTGTGTCTCCCCGTGTGTCCTCCATGTGTCCACACGTCGTAACGGACCCTCCTCAG
GGTCTTTATTGTCTCTTTTAGTCTCGACGACGATTGCGTGGCTTA
Found at i:26056 original size:19 final size:21
Alignment explanation
Indices: 26032--26070 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
26022 TTACACACCC
26032 ACCACCT-TTCT-ACTCTGGT
1 ACCACCTCTTCTGACTCTGGT
26051 ACCACCTCTTCTGACTCTGG
1 ACCACCTCTTCTGACTCTGG
26071 CAGGCGTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 4 0.22
21 7 0.39
ACGTcount: A:0.15, C:0.38, G:0.13, T:0.33
Consensus pattern (21 bp):
ACCACCTCTTCTGACTCTGGT
Left flanking sequence: Indices 25532 -- 26031
CACCTTGTCGGTGTAGCTGTTGCCCACGGCCTCGATGTCGACGGGGATCTCCATGGGTAGTGGTA
GTACGAGTTCTGGCGATGGGTAAAAGTAAGCGGTGGGGCTCGTAACCAGCGAACCCCGATGAAAG
GCCGGTGGCGCCACAACCGCAGCAATGGAATGGAATGGAAGACGGGGGTTTGGAGGCGGTCTGGG
CGGTCGTGGGCGGTGGCGGTTGGTGTGGACGTGTGGCGAAGGCGTGGAATAGGCGAGAAGTGTAG
GATTTGGGAGGTGTCGTGGTTTACTGTGGCGTAGGCAGGGGTCGGGACATGTCATAACAACGATC
TGTCTGTACGTGTGGGTACGTATGGGGTATGACTACCGAAAACCCCGGTGTAGAGATGTTCACAT
TTTGGCCCACCAGAGCCCCCACCAGTGCCCCACCAGTGCCCCACCAGTGCCCTAGAACAAACACA
AAGGGACTGTTGCTACTCGGACACTGTTGCTACTCTTACACACCC
Right flanking sequence: Indices 26071 -- 26570
CAGGCGTCCACAGCAACCCTTAGCCGTACCTGGAAAAACCCGGGGTTCGCCAGCAGGTCGACGAG
AGACAGCCAACGAGTATCGAAAGGACCCCCACGTCCCGGGGGCACGACCATGCATACACCACCAC
CACCGCAAGTAAACCCGATTTAGCAACCATGTCGTGGGTTCACCACGCTACACCACTATCTCCGT
AATTAGCCCAATCCGGTAAGACCGGGGTTCGCGACACCGTCCCATTACACCACCGATTACATCAC
TGGCCAAGCAGACCAGTAGCACAATTACACCGCCATTTCCCTGTGTGTCTCCCCGTGTGTCCTCC
ATGTGTCCACACGTCGTAACGGACCCTCCTCAGGGTCTTTATTGTCTCTTTTAGTCTCGACGACG
ATTGCGTGGCTTAGGGCGTGCCATGCGCCACGACGCCACCGTGGCACCAATCGTTGCGACAGCAT
TCCCGCACGGACCATGCGCGCGGACCCCCATCTTTCTGCACCCGA
Found at i:31368 original size:29 final size:29
Alignment explanation
Indices: 31284--31370 Score: 129
Period size: 29 Copynumber: 3.0 Consensus size: 29
31274 GATTGTGCGG
*
31284 TGGTAGTACGGTTAGTGAGTGTTGATTAT
1 TGGTAGTACGGTTAGTGAGTGTTGGTTAT
31313 TGGTAGTACGGTTAGTGAGTGTTGGTTAT
1 TGGTAGTACGGTTAGTGAGTGTTGGTTAT
* * * *
31342 TGGTAGTATGGTTGGTGATTGTCGGTTAT
1 TGGTAGTACGGTTAGTGAGTGTTGGTTAT
31371 GAATTTTATG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.17, C:0.03, G:0.37, T:0.43
Consensus pattern (29 bp):
TGGTAGTACGGTTAGTGAGTGTTGGTTAT
Left flanking sequence: Indices 30784 -- 31283
ATTCCTGTGTATTTCCGTGCCACGGCACTGCTGGGCGAAATTTTTTTCCACCCACATTTGCAGCC
AACCCGTGCATTGGTCGGTTGGTCCATGGGTGAGACATCGTCGATGTGGGGGATATGACGAAGCG
ATGATGAAGAGATGAAGCTTTGTGATTCGCTGGGGGTCGGGTGGGGGGTGGGGGGGGATGGAAAG
CATGCGTGAGTCGCTTTGTTTGGCCGGTGTTTGCCCTATGTCACTGCCCGTGCATGGAGGTGCAT
TGGTCTTACTGTGAGACACGTACGACAGGCAGAATGAGCAGGAGCCGTACGACTTACGAGGGCGG
GTTTTGGCATGTGCAAATAGCAATCGTGTGTGAAGGCGGGTGAGGTGTGGTGGTGCCTCGCAAAT
GTGGCTGGTGAAATGGTGTCTGGCATGCAAGATTGACAGCACGGCTGGAGAATCTGGTGGACGCG
ATTAAAGATAATGTCTGCTTTAATTGTATTGTTGTGATTGTGCGG
Right flanking sequence: Indices 31371 -- 31870
GAATTTTATGGTTAGTGATTCACGGTTTAATTGTACGGTTAGTGATTCACGATTACTGCTTGTAC
ATTAAAGGATTCACTGTTTTTTGGTTACCAATTGTCGGTTAACAATTGTAGGTTTTGAATAGTCG
GTTATGAATTATACGGTTAGTGACTGTACGGTTAATGAATCTTGGTATTAATTGTACGGTTTCAT
TTGTCGGTTATGGATAGTATTGTTGGGGATCGTCGGTAGGAATTGTCGGTTATCAATTGGTGTTA
TCCACCATTCACTTTCACTACATCTACACATTTACTCTTGGATCGGCTTTCCCTCCAAAAGTGCA
GACCGTATTTGAAACAATACAGACTCAGCACAAAATCAACACTGTCCGCAGACATTTAAACAATA
GAAGACCCGTTAAACCACCCAGATATCCCCAACCCATCCACTTATACCACATTTCTTTCTCCGTA
GAACACCATAATAAACCACGACCACCCACCATCTACACCACTTCC
Found at i:31396 original size:29 final size:27
Alignment explanation
Indices: 31347--31421 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
31337 GTTATTGGTA
* **
31347 GTATGGTTGGTGATTGTCGGTTATGAATT
1 GTATGGTTAGTGATTCACGGTT-T-AATT
*
31376 TTATGGTTAGTGATTCACGGTTTAATT
1 GTATGGTTAGTGATTCACGGTTTAATT
*
31403 GTACGGTTAGTGATTCACG
1 GTATGGTTAGTGATTCACG
31422 ATTACTGCTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
27 21 0.52
28 1 0.03
29 18 0.45
ACGTcount: A:0.20, C:0.08, G:0.29, T:0.43
Consensus pattern (27 bp):
GTATGGTTAGTGATTCACGGTTTAATT
Left flanking sequence: Indices 30847 -- 31346
CCAACCCGTGCATTGGTCGGTTGGTCCATGGGTGAGACATCGTCGATGTGGGGGATATGACGAAG
CGATGATGAAGAGATGAAGCTTTGTGATTCGCTGGGGGTCGGGTGGGGGGTGGGGGGGGATGGAA
AGCATGCGTGAGTCGCTTTGTTTGGCCGGTGTTTGCCCTATGTCACTGCCCGTGCATGGAGGTGC
ATTGGTCTTACTGTGAGACACGTACGACAGGCAGAATGAGCAGGAGCCGTACGACTTACGAGGGC
GGGTTTTGGCATGTGCAAATAGCAATCGTGTGTGAAGGCGGGTGAGGTGTGGTGGTGCCTCGCAA
ATGTGGCTGGTGAAATGGTGTCTGGCATGCAAGATTGACAGCACGGCTGGAGAATCTGGTGGACG
CGATTAAAGATAATGTCTGCTTTAATTGTATTGTTGTGATTGTGCGGTGGTAGTACGGTTAGTGA
GTGTTGATTATTGGTAGTACGGTTAGTGAGTGTTGGTTATTGGTA
Right flanking sequence: Indices 31422 -- 31921
ATTACTGCTTGTACATTAAAGGATTCACTGTTTTTTGGTTACCAATTGTCGGTTAACAATTGTAG
GTTTTGAATAGTCGGTTATGAATTATACGGTTAGTGACTGTACGGTTAATGAATCTTGGTATTAA
TTGTACGGTTTCATTTGTCGGTTATGGATAGTATTGTTGGGGATCGTCGGTAGGAATTGTCGGTT
ATCAATTGGTGTTATCCACCATTCACTTTCACTACATCTACACATTTACTCTTGGATCGGCTTTC
CCTCCAAAAGTGCAGACCGTATTTGAAACAATACAGACTCAGCACAAAATCAACACTGTCCGCAG
ACATTTAAACAATAGAAGACCCGTTAAACCACCCAGATATCCCCAACCCATCCACTTATACCACA
TTTCTTTCTCCGTAGAACACCATAATAAACCACGACCACCCACCATCTACACCACTTCCTTTCTC
CGTAGAACGCCACAATATCCCCCAACCAGCCCACCTACCACTTCC
Found at i:32114 original size:27 final size:25
Alignment explanation
Indices: 32076--32152 Score: 104
Period size: 24 Copynumber: 3.1 Consensus size: 25
32066 ACCAAATACC
32076 CCCACCTACACCACCTTTTCCTTTCTT
1 CCCACCTACACC-CC-TTTCCTTTCTT
*
32103 CCCACCTACACCCCTTT-CGTTCTT
1 CCCACCTACACCCCTTTCCTTTCTT
*
32127 CCCACCTAAACCCC-TTCCTTTCTT
1 CCCACCTACACCCCTTTCCTTTCTT
32151 CC
1 CC
32153 TCCTTCTTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.04
24 27 0.59
25 3 0.07
26 2 0.04
27 12 0.26
ACGTcount: A:0.14, C:0.51, G:0.01, T:0.34
Consensus pattern (25 bp):
CCCACCTACACCCCTTTCCTTTCTT
Left flanking sequence: Indices 31576 -- 32075
TGGATAGTATTGTTGGGGATCGTCGGTAGGAATTGTCGGTTATCAATTGGTGTTATCCACCATTC
ACTTTCACTACATCTACACATTTACTCTTGGATCGGCTTTCCCTCCAAAAGTGCAGACCGTATTT
GAAACAATACAGACTCAGCACAAAATCAACACTGTCCGCAGACATTTAAACAATAGAAGACCCGT
TAAACCACCCAGATATCCCCAACCCATCCACTTATACCACATTTCTTTCTCCGTAGAACACCATA
ATAAACCACGACCACCCACCATCTACACCACTTCCTTTCTCCGTAGAACGCCACAATATCCCCCA
ACCAGCCCACCTACCACTTCCTTTCCCCATAGGCACCTAACTATCCCCTAACCAGCCCACGACTT
CCTCTCTCCGTAGAAAACTATAATATCTACACCACTTCCTTTCCCCATAGACCACCCAATTATCC
CCTAACCAACCTACCACTTCTTTTCTCCTTTCAACACCAAATACC
Right flanking sequence: Indices 32153 -- 32652
TCCTTCTTTCCTCCCACCTACACCCCTTCTTTCTCTCCACCCCTTCCTTCTTCCCACACCCCTTC
CTTCTTCCTTTTTTCTTCTATTACTATCCAAACACCAAACCTGTCGATGCTACAACAACCCGTCC
AAGTCGAACTCCTTGGCCCACTCGGTGACGATCTCCGTGTGAGCGGCCAGGGGCTTCGCCGCCGC
CGCCACCGACTCCAGGGCCGGCGCAGGCGTCCACCCCTGCACGCGGCCATCCCGCCAGTCGTTGA
GCACCAGAATCGCCGCCGAGTCGAGGTTGGGCACCCCGTACTTGCCCAACCGGCCCCGGTTACGA
GCCACGTGGATCAAGAACAACTTGACAAAGTCGTCGATGGTGGCCAGCGCCAACGGAGGCACCTC
GTAGTACTCGCGGAGCCCGCGGGCCATGTCGTCGTCCTTGGAAAACTTCTTGATGAGCATCTTGA
CCGCGCCCTGGGGGTCGGTGATCTGTTTCGGGGGAAGTGCCAGCA
Found at i:32214 original size:19 final size:19
Alignment explanation
Indices: 32172--32225 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
32162 CCTCCCACCT
* *
32172 ACACCCCTTCTTTC-TCTC
1 ACACCCCTTCCTTCTTCCC
32190 -CACCCCTTCCTTCTTCCC
1 ACACCCCTTCCTTCTTCCC
32208 ACACCCCTTCCTTCTTCC
1 ACACCCCTTCCTTCTTCC
32226 TTTTTTCTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 12 0.38
18 3 0.09
19 17 0.53
ACGTcount: A:0.09, C:0.56, G:0.00, T:0.35
Consensus pattern (19 bp):
ACACCCCTTCCTTCTTCCC
Left flanking sequence: Indices 31672 -- 32171
ATCGGCTTTCCCTCCAAAAGTGCAGACCGTATTTGAAACAATACAGACTCAGCACAAAATCAACA
CTGTCCGCAGACATTTAAACAATAGAAGACCCGTTAAACCACCCAGATATCCCCAACCCATCCAC
TTATACCACATTTCTTTCTCCGTAGAACACCATAATAAACCACGACCACCCACCATCTACACCAC
TTCCTTTCTCCGTAGAACGCCACAATATCCCCCAACCAGCCCACCTACCACTTCCTTTCCCCATA
GGCACCTAACTATCCCCTAACCAGCCCACGACTTCCTCTCTCCGTAGAAAACTATAATATCTACA
CCACTTCCTTTCCCCATAGACCACCCAATTATCCCCTAACCAACCTACCACTTCTTTTCTCCTTT
CAACACCAAATACCCCCACCTACACCACCTTTTCCTTTCTTCCCACCTACACCCCTTTCGTTCTT
CCCACCTAAACCCCTTCCTTTCTTCCTCCTTCTTTCCTCCCACCT
Right flanking sequence: Indices 32226 -- 32725
TTTTTTCTTCTATTACTATCCAAACACCAAACCTGTCGATGCTACAACAACCCGTCCAAGTCGAA
CTCCTTGGCCCACTCGGTGACGATCTCCGTGTGAGCGGCCAGGGGCTTCGCCGCCGCCGCCACCG
ACTCCAGGGCCGGCGCAGGCGTCCACCCCTGCACGCGGCCATCCCGCCAGTCGTTGAGCACCAGA
ATCGCCGCCGAGTCGAGGTTGGGCACCCCGTACTTGCCCAACCGGCCCCGGTTACGAGCCACGTG
GATCAAGAACAACTTGACAAAGTCGTCGATGGTGGCCAGCGCCAACGGAGGCACCTCGTAGTACT
CGCGGAGCCCGCGGGCCATGTCGTCGTCCTTGGAAAACTTCTTGATGAGCATCTTGACCGCGCCC
TGGGGGTCGGTGATCTGTTTCGGGGGAAGTGCCAGCAAGAGCGCGAGCTTGTTGGCCAGCGCCAG
CCGCTCGTCGGGGAACACAATACCGGGCAGGTCTAACACCTTCAA
Found at i:33884 original size:10 final size:10
Alignment explanation
Indices: 33869--33907 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
33859 TGGATGTGGA
33869 GGTGGTTTTT
1 GGTGGTTTTT
*
33879 GGTGGTTTGGT
1 GGTGGTTT-TT
*
33890 GGTGGGTTTT
1 GGTGGTTTTT
33900 GGTGGTTT
1 GGTGGTTT
33908 CGTGGGTGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (10 bp):
GGTGGTTTTT
Left flanking sequence: Indices 33369 -- 33868
GCAAGCCCGCCGGCCCCGTCGTCGTCATCCTCCTCCATCGGGGCGTCCTCGCCGGCCTCCATCGC
GGCCTCGCGCCGCAACTGGCGGTTGCGCTCCTTGCGGGCCGCCTCCTCTTCCTTCTGCTGCTCCA
ATTCAGCAAGGAGCTTGTCCTTGAACGGGTACAGCGCCGGGATCCCGATCTCCTTCGGCTTGCGG
GACTTCCACGTGGGGTCCTTTTTCAGGAGTTTGCGGTTCTTGCGGAGCTGGGCCGCCGCCTTCTT
CTTGATGCCCTCACGCATCTTGGTCCCTACACGCTTGGACGTGGGCTTTTTGACTCTCATGGTGG
GGTATAGAGATGCGATGAGATGCGATGAGGTGATTTGTGCGAGTGCGAGCGAGCGAGCGGTGGGA
ATGCGAGGAAAGAAAGAACGCGAAGAGGAAGGAAAAGAAGGAAAAGGGGTGTAAAGGGGAACAGG
TTGGGGAGGGTTGGTGGGTGAAGAGGGGTGTGGGGTGGATGTGGA
Right flanking sequence: Indices 33908 -- 34407
CGTGGGTGGTTCAGGGGTAGTGGTGGAGGTAGTGTGTGTAGGCCAGGTGGATAAGGAGCGGGTAA
TGGAAGGTAAGGTGGAGAAGTGGGGGTGGAACGTCTACGGGGTGGATGTAAACGGTGTGTAGAGA
AGAAACGGGGTGTTTTTTAAGTGGAAACTAACGGTTTCTCGGCCGTGTGGTGGGTCCTATCGCGT
CTCGTGTGGTCACAGTGCGACCGGTCAGACGACCACTACAGCTGGTAGGAGACTACAAAATCACT
CACTCTAGCTGGGGGGGCCGCAAGCGGCGCCCCCCCAGACCCCCCCAACGCTTATTTGTGTGTAA
AGTGGTTAATTAGTTCGTGTAGTTCGTCATAGATCGTGGTATCGTAGAGTGACTAGCTTACTACT
GGTTCTACTCTAGTCACCATTTTCTACCATTTCCCGCTTTCTCCCATTTCCCAGGTGTTGAGCTA
CCAACTACACACTCCATACCCCTCCCGTCTCCCTGTGCACCCTCA
Found at i:33899 original size:21 final size:21
Alignment explanation
Indices: 33869--33912 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
33859 TGGATGTGGA
* *
33869 GGTGGTTTTTGGTGGTTTGGT
1 GGTGGGTTTTGGTGGTTTCGT
33890 GGTGGGTTTTGGTGGTTTCGT
1 GGTGGGTTTTGGTGGTTTCGT
33911 GG
1 GG
33913 GTGGTTCAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.02, G:0.50, T:0.48
Consensus pattern (21 bp):
GGTGGGTTTTGGTGGTTTCGT
Left flanking sequence: Indices 33369 -- 33868
GCAAGCCCGCCGGCCCCGTCGTCGTCATCCTCCTCCATCGGGGCGTCCTCGCCGGCCTCCATCGC
GGCCTCGCGCCGCAACTGGCGGTTGCGCTCCTTGCGGGCCGCCTCCTCTTCCTTCTGCTGCTCCA
ATTCAGCAAGGAGCTTGTCCTTGAACGGGTACAGCGCCGGGATCCCGATCTCCTTCGGCTTGCGG
GACTTCCACGTGGGGTCCTTTTTCAGGAGTTTGCGGTTCTTGCGGAGCTGGGCCGCCGCCTTCTT
CTTGATGCCCTCACGCATCTTGGTCCCTACACGCTTGGACGTGGGCTTTTTGACTCTCATGGTGG
GGTATAGAGATGCGATGAGATGCGATGAGGTGATTTGTGCGAGTGCGAGCGAGCGAGCGGTGGGA
ATGCGAGGAAAGAAAGAACGCGAAGAGGAAGGAAAAGAAGGAAAAGGGGTGTAAAGGGGAACAGG
TTGGGGAGGGTTGGTGGGTGAAGAGGGGTGTGGGGTGGATGTGGA
Right flanking sequence: Indices 33913 -- 34412
GTGGTTCAGGGGTAGTGGTGGAGGTAGTGTGTGTAGGCCAGGTGGATAAGGAGCGGGTAATGGAA
GGTAAGGTGGAGAAGTGGGGGTGGAACGTCTACGGGGTGGATGTAAACGGTGTGTAGAGAAGAAA
CGGGGTGTTTTTTAAGTGGAAACTAACGGTTTCTCGGCCGTGTGGTGGGTCCTATCGCGTCTCGT
GTGGTCACAGTGCGACCGGTCAGACGACCACTACAGCTGGTAGGAGACTACAAAATCACTCACTC
TAGCTGGGGGGGCCGCAAGCGGCGCCCCCCCAGACCCCCCCAACGCTTATTTGTGTGTAAAGTGG
TTAATTAGTTCGTGTAGTTCGTCATAGATCGTGGTATCGTAGAGTGACTAGCTTACTACTGGTTC
TACTCTAGTCACCATTTTCTACCATTTCCCGCTTTCTCCCATTTCCCAGGTGTTGAGCTACCAAC
TACACACTCCATACCCCTCCCGTCTCCCTGTGCACCCTCACTTCC
Found at i:33918 original size:21 final size:20
Alignment explanation
Indices: 33869--33918 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
33859 TGGATGTGGA
*
33869 GGTGGTTTTTGGTGGTTTGGT
1 GGTGG-TTTTGGTGGTTTCGT
33890 GGTGGGTTTTGGTGGTTTCGT
1 GGT-GGTTTTGGTGGTTTCGT
33911 GGGTGGTT
1 -GGTGGTT
33919 CAGGGGTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.00, C:0.02, G:0.50, T:0.48
Consensus pattern (20 bp):
GGTGGTTTTGGTGGTTTCGT
Left flanking sequence: Indices 33369 -- 33868
GCAAGCCCGCCGGCCCCGTCGTCGTCATCCTCCTCCATCGGGGCGTCCTCGCCGGCCTCCATCGC
GGCCTCGCGCCGCAACTGGCGGTTGCGCTCCTTGCGGGCCGCCTCCTCTTCCTTCTGCTGCTCCA
ATTCAGCAAGGAGCTTGTCCTTGAACGGGTACAGCGCCGGGATCCCGATCTCCTTCGGCTTGCGG
GACTTCCACGTGGGGTCCTTTTTCAGGAGTTTGCGGTTCTTGCGGAGCTGGGCCGCCGCCTTCTT
CTTGATGCCCTCACGCATCTTGGTCCCTACACGCTTGGACGTGGGCTTTTTGACTCTCATGGTGG
GGTATAGAGATGCGATGAGATGCGATGAGGTGATTTGTGCGAGTGCGAGCGAGCGAGCGGTGGGA
ATGCGAGGAAAGAAAGAACGCGAAGAGGAAGGAAAAGAAGGAAAAGGGGTGTAAAGGGGAACAGG
TTGGGGAGGGTTGGTGGGTGAAGAGGGGTGTGGGGTGGATGTGGA
Right flanking sequence: Indices 33919 -- 34418
CAGGGGTAGTGGTGGAGGTAGTGTGTGTAGGCCAGGTGGATAAGGAGCGGGTAATGGAAGGTAAG
GTGGAGAAGTGGGGGTGGAACGTCTACGGGGTGGATGTAAACGGTGTGTAGAGAAGAAACGGGGT
GTTTTTTAAGTGGAAACTAACGGTTTCTCGGCCGTGTGGTGGGTCCTATCGCGTCTCGTGTGGTC
ACAGTGCGACCGGTCAGACGACCACTACAGCTGGTAGGAGACTACAAAATCACTCACTCTAGCTG
GGGGGGCCGCAAGCGGCGCCCCCCCAGACCCCCCCAACGCTTATTTGTGTGTAAAGTGGTTAATT
AGTTCGTGTAGTTCGTCATAGATCGTGGTATCGTAGAGTGACTAGCTTACTACTGGTTCTACTCT
AGTCACCATTTTCTACCATTTCCCGCTTTCTCCCATTTCCCAGGTGTTGAGCTACCAACTACACA
CTCCATACCCCTCCCGTCTCCCTGTGCACCCTCACTTCCCTACTC
Found at i:34905 original size:7 final size:7
Alignment explanation
Indices: 34882--34916 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
34872 CCCAACCGAC
34882 CCACCCA
1 CCACCCA
34889 TCCAACCCA
1 -CC-ACCCA
34898 CCACCCA
1 CCACCCA
34905 CCACCCA
1 CCACCCA
34912 CCACC
1 CCACC
34917 ATGACGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 17 0.65
8 4 0.15
9 5 0.19
ACGTcount: A:0.29, C:0.69, G:0.00, T:0.03
Consensus pattern (7 bp):
CCACCCA
Left flanking sequence: Indices 34382 -- 34881
CCCTCCCGTCTCCCTGTGCACCCTCACTTCCCTACTCTCCATCCATCTTTTCTCACTACCTGACC
GCCTTCGCAGCCGGGCCAACCCGATAAGCTACCCACACACCAACAAACCATTCAACAAACCATGC
CTACGAACCACATTAAAACCAAAATAACTCTCCTCCAACTACCCCCGCACCCCCTAACCCCCTCT
ATCATCCACCACTATCCACCCCTCCTTTCTTTCACCGCTCCCCGCCTCATGTAAATATCACACTC
TATTCTGGACCTACTTTTCCCATAATAACCTTGAGTCACCACCAACACAACCACCGCTAAAAACA
CCCAAACCACGCCCAAAAACGAAAAATAAAAACCAAAAAAATCCACCTCTTTCCACACACCCACC
ATACCCTTCCCCACCTCCACTACCCTCTCCCTTTCTTTCCCATCCCACCCCACCTCCACCTTTCC
CTTCGCACTCTGACTCACTGAAAAATTCACCCGATCCCAACCGAC
Right flanking sequence: Indices 34917 -- 35416
ATGACGACCGGCCGCCATGTCGTCATGATCGACAACTACGACTCGTTCACCTGGAACCTCTACCA
GTTCCTCTGCCAGCTGCCCCGCTGTGGCCGCGTGGACGTGTTCCGCAACGACCAGATCACCTTGG
CCGAGCTCGACGCCCTCAACCCGGACATTTTGTTCGTTTCTCCGGGTCCCGGCCACCCCACCACC
GACCTGGGCATCAGCAGAGACGTCATTGCCCACTACAAGGGCAAGAAGCCCATCTTTGGTGTGTG
CATGGGCCTCCAGTGCATCTTTGACGTTTTTGGGGGAAATGTCGACTACGCCGGCGAGATTGTCC
ACGGCAAGACCACCACCATCAAGCACGACAACCGCGGGATGTTCGCGGGTGTGCCCCAGCTGGTG
GCTGTGACCCGGTACCACTCGTTGGCGGGCACCAAGGGCACGCTTCCCCAGGAGTTGGAGGTGAC
GGCCACCACCGAGACCAACCCCGAGATCATCATGGGTGTGAGACA
Found at i:36544 original size:18 final size:18
Alignment explanation
Indices: 36489--36538 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
36479 GGGGGCCAGT
36489 GTGTGGTAAGACCAGTTG
1 GTGTGGTAAGACCAGTTG
36507 GTGTGGTAAGACCAGTTG
1 GTGTGGTAAGACCAGTTG
*
36525 GTGTAGTAAGACCA
1 GTGTGGTAAGACCA
36539 TGTGGTATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.26, C:0.12, G:0.36, T:0.26
Consensus pattern (18 bp):
GTGTGGTAAGACCAGTTG
Left flanking sequence: Indices 35989 -- 36488
TCTTCAACAAGTACCAGATTGCCGAGGCCCGGCTTGCGGGCGCGGACACCGTGTTGCTCATTGTC
AAGATGTTGCCTCCGGCCGAGCTCCAGGAGCTCTACAGCTACTGCCACCAGCTTGGGATGGTGCC
GCTTGTGGAGATCAACAACGCGGCCGAGTTGAAGACCGCGCTTGCGTTGACGGTGGACGGCCAGA
CCCGCGAGCCGCTTGTGCTCGGGGTTAACAACCGCAACTTGACCAACTTCGACGTGGACTTGGCC
ACCACCACCAACTTGGTGGAGGACTCCAAGACCAACAACGGGCGCGACGGGCCGGTGTTGTTGTT
GGCGTTGCTGGGGATCCTGGCTGTGGACGACGTGGCCAGCTACAAGAAGGAGGGGGTCGACGGGT
TCTTGATTGGGGAGCTGTTGATGCGGGCGGAGGCCCGGGGCGAGGCTGCGCTGTTCTTGGGCGAG
TTGATTAACTGTTAGACTAATAAATGCTTGATTTGGGGGGCCAGT
Right flanking sequence: Indices 36539 -- 37038
TGTGGTATTCACGAATTGAAGTGAATGTACGGGTTGATACTCTGCAAGCGGCTACAGCTTATACC
CTGGGAGTTTTGAATATACATCGATATGAATATTTTGAGAGACGTGTAGTTTCAGAGACCCCTCT
TTGGTGTGTAAATACCTACCACCGTTTCGTCGTCATGAATCTTGCAATGGTGTCTTCAGTTGGGC
TCCATTGTGGGTATGGTCATCTCAGAACACTACCTGGATTCGCTCTGTAACTACAGTGACGAAAC
CTATTTCCAGAATGAATTCAAAGCTGTCACCTAAATGGACTCTCGGCAGATTCAGAAGATTCATC
TGAACAAATGTCGATCTAGTCTGGCTGGAGCAAATGCTTGTTGATGTATCTTATTGTTATACCTA
CGTTCCACGGTCAGCCCGCTACTCAGGGTGCGTTTTGGTACCTGGTAAGATTGGGATCTTAGACT
CGAAAGTTTTTCAAACAAGCTCTCCAACAAGTCGTATGCAAAGAG
Found at i:40159 original size:19 final size:19
Alignment explanation
Indices: 40135--40200 Score: 87
Period size: 19 Copynumber: 3.4 Consensus size: 19
40125 CCCCTAGTTT
*
40135 CTAGTCTCTCCTAGCCTCC
1 CTAGTCTCTCCTAGTCTCC
40154 CTAGTCTCTCCTAGTCTCC
1 CTAGTCTCTCCTAGTCTCC
* * *
40173 CCAATGTCTCCTAGTCTCTC
1 CTAGTCTCTCCTAGTCTC-C
40193 CTAGTCTC
1 CTAGTCTC
40201 GCCCAGCTTC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 33 0.85
20 6 0.15
ACGTcount: A:0.12, C:0.42, G:0.11, T:0.35
Consensus pattern (19 bp):
CTAGTCTCTCCTAGTCTCC
Left flanking sequence: Indices 39635 -- 40134
GTTGGTGTTTTGGGCGTACTCAGGGATATGATCACAACTATTAGGGTTGGACTCATCAGTCAAAA
GAGCCTATCACATGTGATTAAAGTGGGGCCAGCGGAGGTAAATGAAACAATAACCAGCACCACAA
GCACCACACCACTTGGCAATGAGTCAATTGAATGGCTCAATTGACCCATCACACCCCTGTCAAGA
CGTTGCATTGTCATGCATACCTATCTGCCGTGATAACGACTCGCTTATAGTATCACTTGTCCACA
GCATGTAGGCACCCCTGACTGTGGATATATGCCACTACCACCCCCAAACGCCTTGTTTCCCAATG
CCTTCTCAATGCCTTCAATGCCTCATCTCACCACTAAATCTTTCACCGTTTCTTCTAGGTTTTGT
AGAAAATGTGTGGAAATGTAACAAAATATGTCAAATATTCCTAGTAATACCCCTACACAATTCTC
CATTGTTGATTAACTAGTATTGTAAGTTTGTATACCCCCTAGTTT
Right flanking sequence: Indices 40201 -- 40700
GCCCAGCTTCCATAGGCTCGCATTGCTACACCTCCCCTACTTAAACAAATCCTCGCACTTGAGGC
TCGACACCGGGTGCTCCAAGAGGTCGGCCGTGAACTCGTGTGCGTCCCGCATCGCCCACTGCATC
AGCGTGTGACTGTCGCTGACCCGGCGTCGCGACTTGAACCCCTCGTACACCTCGGTGAGCGAGAA
CTGCTGGTGGCCCGAAAACACGAGCGGCCACTGGGTCTCGGTGAGCACGAGCGCCTTGTACACCG
CCAGCTCCATCGCCGACGCCTCGGAAAGGTCGCCAACATCGATTTCCACGCAGTCTACGGTATAG
TGGGGGAAGTACACGGGCTCGGGCGGCACAAACGCCACCTCGGCGTCGGGCCCCACCTCGAGCTT
GCCGAGAGTCGCACTGGCGCCCCGACTGAGCTTTTCCATCGTTTCCCGCGCCTGGGCCCGGTCTC
CGCCCACGATGGCTACGGTGAACTCAGGATGGCGGAAGAAGCTCG
Found at i:40166 original size:10 final size:10
Alignment explanation
Indices: 40135--40200 Score: 82
Period size: 10 Copynumber: 6.8 Consensus size: 10
40125 CCCCTAGTTT
40135 CTAGTCTCTC
1 CTAGTCTCTC
*
40145 CTAGCCTC-C
1 CTAGTCTCTC
40154 CTAGTCTCTC
1 CTAGTCTCTC
40164 CTAGTCTC-C
1 CTAGTCTCTC
* * *
40173 CCAATGTCTC
1 CTAGTCTCTC
40183 CTAGTCTCTC
1 CTAGTCTCTC
40193 CTAGTCTC
1 CTAGTCTC
40201 GCCCAGCTTC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
9 14 0.30
10 32 0.70
ACGTcount: A:0.12, C:0.42, G:0.11, T:0.35
Consensus pattern (10 bp):
CTAGTCTCTC
Left flanking sequence: Indices 39635 -- 40134
GTTGGTGTTTTGGGCGTACTCAGGGATATGATCACAACTATTAGGGTTGGACTCATCAGTCAAAA
GAGCCTATCACATGTGATTAAAGTGGGGCCAGCGGAGGTAAATGAAACAATAACCAGCACCACAA
GCACCACACCACTTGGCAATGAGTCAATTGAATGGCTCAATTGACCCATCACACCCCTGTCAAGA
CGTTGCATTGTCATGCATACCTATCTGCCGTGATAACGACTCGCTTATAGTATCACTTGTCCACA
GCATGTAGGCACCCCTGACTGTGGATATATGCCACTACCACCCCCAAACGCCTTGTTTCCCAATG
CCTTCTCAATGCCTTCAATGCCTCATCTCACCACTAAATCTTTCACCGTTTCTTCTAGGTTTTGT
AGAAAATGTGTGGAAATGTAACAAAATATGTCAAATATTCCTAGTAATACCCCTACACAATTCTC
CATTGTTGATTAACTAGTATTGTAAGTTTGTATACCCCCTAGTTT
Right flanking sequence: Indices 40201 -- 40700
GCCCAGCTTCCATAGGCTCGCATTGCTACACCTCCCCTACTTAAACAAATCCTCGCACTTGAGGC
TCGACACCGGGTGCTCCAAGAGGTCGGCCGTGAACTCGTGTGCGTCCCGCATCGCCCACTGCATC
AGCGTGTGACTGTCGCTGACCCGGCGTCGCGACTTGAACCCCTCGTACACCTCGGTGAGCGAGAA
CTGCTGGTGGCCCGAAAACACGAGCGGCCACTGGGTCTCGGTGAGCACGAGCGCCTTGTACACCG
CCAGCTCCATCGCCGACGCCTCGGAAAGGTCGCCAACATCGATTTCCACGCAGTCTACGGTATAG
TGGGGGAAGTACACGGGCTCGGGCGGCACAAACGCCACCTCGGCGTCGGGCCCCACCTCGAGCTT
GCCGAGAGTCGCACTGGCGCCCCGACTGAGCTTTTCCATCGTTTCCCGCGCCTGGGCCCGGTCTC
CGCCCACGATGGCTACGGTGAACTCAGGATGGCGGAAGAAGCTCG
Found at i:40170 original size:29 final size:29
Alignment explanation
Indices: 40135--40205 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
40125 CCCCTAGTTT
* *
40135 CTAGTCTCTCCTA-GCCTCCCTAGTCTCTC
1 CTAGTCTCCCCAATGCCT-CCTAGTCTCTC
*
40164 CTAGTCTCCCCAATGTCTCCTAGTCTCTC
1 CTAGTCTCCCCAATGCCTCCTAGTCTCTC
40193 CTAGTCTCGCCCA
1 CTAGTCTC-CCCA
40206 GCTTCCATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 30 0.81
30 7 0.19
ACGTcount: A:0.13, C:0.44, G:0.11, T:0.32
Consensus pattern (29 bp):
CTAGTCTCCCCAATGCCTCCTAGTCTCTC
Left flanking sequence: Indices 39635 -- 40134
GTTGGTGTTTTGGGCGTACTCAGGGATATGATCACAACTATTAGGGTTGGACTCATCAGTCAAAA
GAGCCTATCACATGTGATTAAAGTGGGGCCAGCGGAGGTAAATGAAACAATAACCAGCACCACAA
GCACCACACCACTTGGCAATGAGTCAATTGAATGGCTCAATTGACCCATCACACCCCTGTCAAGA
CGTTGCATTGTCATGCATACCTATCTGCCGTGATAACGACTCGCTTATAGTATCACTTGTCCACA
GCATGTAGGCACCCCTGACTGTGGATATATGCCACTACCACCCCCAAACGCCTTGTTTCCCAATG
CCTTCTCAATGCCTTCAATGCCTCATCTCACCACTAAATCTTTCACCGTTTCTTCTAGGTTTTGT
AGAAAATGTGTGGAAATGTAACAAAATATGTCAAATATTCCTAGTAATACCCCTACACAATTCTC
CATTGTTGATTAACTAGTATTGTAAGTTTGTATACCCCCTAGTTT
Right flanking sequence: Indices 40206 -- 40705
GCTTCCATAGGCTCGCATTGCTACACCTCCCCTACTTAAACAAATCCTCGCACTTGAGGCTCGAC
ACCGGGTGCTCCAAGAGGTCGGCCGTGAACTCGTGTGCGTCCCGCATCGCCCACTGCATCAGCGT
GTGACTGTCGCTGACCCGGCGTCGCGACTTGAACCCCTCGTACACCTCGGTGAGCGAGAACTGCT
GGTGGCCCGAAAACACGAGCGGCCACTGGGTCTCGGTGAGCACGAGCGCCTTGTACACCGCCAGC
TCCATCGCCGACGCCTCGGAAAGGTCGCCAACATCGATTTCCACGCAGTCTACGGTATAGTGGGG
GAAGTACACGGGCTCGGGCGGCACAAACGCCACCTCGGCGTCGGGCCCCACCTCGAGCTTGCCGA
GAGTCGCACTGGCGCCCCGACTGAGCTTTTCCATCGTTTCCCGCGCCTGGGCCCGGTCTCCGCCC
ACGATGGCTACGGTGAACTCAGGATGGCGGAAGAAGCTCGGCTGC
Found at i:41177 original size:9 final size:9
Alignment explanation
Indices: 41163--41210 Score: 75
Period size: 9 Copynumber: 5.7 Consensus size: 9
41153 TAGTAAGCAT
41163 TAAACATTG
1 TAAACATTG
41172 TAAACATTG
1 TAAACATTG
41181 T-AACATTG
1 TAAACATTG
41189 TAAACATTG
1 TAAACATTG
41198 T--ACATTG
1 TAAACATTG
41205 TAAACA
1 TAAACA
41211 CTGTTTTGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.19
8 8 0.22
9 21 0.58
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.33
Consensus pattern (9 bp):
TAAACATTG
Left flanking sequence: Indices 40663 -- 41162
GATGGCTACGGTGAACTCAGGATGGCGGAAGAAGCTCGGCTGCTGGAGGAAGTTGGTGTCGTCGA
GCGCACTGGTGGCCACCTCGGTGGTGAGCCAGGTCACGGTGACGGGGTGCTCCTTCCCGTCGGCT
GCAACGGTCAATTGGTGGGTGTGGCGGGTCTGTTCGGACATCGTTGGCTCGCGGGTCAGGGTGTG
TCGAAATGTTGGTCGCCCCGCATAAATGGGGTGATAATATGCACCCGGCGATGGTGCCAGACGAG
GCGGTTTGGGTGCGAGGTGGGGGTGGTCCCGGGTTGCGAGAGAGTGCCGGTGGCTCTGGAGCAGC
CGGTGTGGCTGGTGGTTGTCTCGCTACTACTAGCCGGGCACAATGGGCTCATTAAGCCATGGGGC
CTATTACGTGCATGACGCATGGTCCGATCGGACAGAGAGATCTAGGGATGTTGGGACTGGGCTCG
CGAGTGGTTTATGCAAGTGGACGCTGATGTGAGGTTAGTAAGCAT
Right flanking sequence: Indices 41211 -- 41710
CTGTTTTGACAGGTTCGCTAAATTCACCAATGTGGTTACCATATAGGTGGGCACTGGTGGACACT
GGTGGCACTGGTGGGCACCAATGGCACAGTTGCATTTCTCGTAGCCGTGCGAGACTGGTCCTCGT
GTGACTATAGGGCTACAAAACATTTTCTCTACTCTTATCAACCACGCTACTCCAGTCCCAACACT
CGTTTTGGCCTCCCTTCGCGGACCACCCACGACGCATTGTTTTCGTTTTGTGCGAATAAAGCACC
AATGTCGTAAGCCATTCGTAAGCCAACGTAACACAACGTAAGCCCACGTAAGCCATCGTGCGCCA
TCGTCTAAGCCCATGGGACCCAACGAATCGCACACCGCGGAGAGATAGCGCATTTCCGTAAGCCA
CTCCCCGCCTGTGCCCCTCCAACCCACGGGACGGCTCCTGACGGCTCCGTATTGTTTATGCGGCA
CAAAACTACACAAAGGATCGCCAAGCACCACAAACCAAGTACGAG
Found at i:41187 original size:17 final size:17
Alignment explanation
Indices: 41165--41210 Score: 85
Period size: 17 Copynumber: 2.8 Consensus size: 17
41155 GTAAGCATTA
41165 AACATTGTAAACATTGT
1 AACATTGTAAACATTGT
41182 AACATTGTAAACATTGT
1 AACATTGTAAACATTGT
41199 -ACATTGTAAACA
1 AACATTGTAAACA
41211 CTGTTTTGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 12 0.41
17 17 0.59
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (17 bp):
AACATTGTAAACATTGT
Left flanking sequence: Indices 40665 -- 41164
TGGCTACGGTGAACTCAGGATGGCGGAAGAAGCTCGGCTGCTGGAGGAAGTTGGTGTCGTCGAGC
GCACTGGTGGCCACCTCGGTGGTGAGCCAGGTCACGGTGACGGGGTGCTCCTTCCCGTCGGCTGC
AACGGTCAATTGGTGGGTGTGGCGGGTCTGTTCGGACATCGTTGGCTCGCGGGTCAGGGTGTGTC
GAAATGTTGGTCGCCCCGCATAAATGGGGTGATAATATGCACCCGGCGATGGTGCCAGACGAGGC
GGTTTGGGTGCGAGGTGGGGGTGGTCCCGGGTTGCGAGAGAGTGCCGGTGGCTCTGGAGCAGCCG
GTGTGGCTGGTGGTTGTCTCGCTACTACTAGCCGGGCACAATGGGCTCATTAAGCCATGGGGCCT
ATTACGTGCATGACGCATGGTCCGATCGGACAGAGAGATCTAGGGATGTTGGGACTGGGCTCGCG
AGTGGTTTATGCAAGTGGACGCTGATGTGAGGTTAGTAAGCATTA
Right flanking sequence: Indices 41211 -- 41710
CTGTTTTGACAGGTTCGCTAAATTCACCAATGTGGTTACCATATAGGTGGGCACTGGTGGACACT
GGTGGCACTGGTGGGCACCAATGGCACAGTTGCATTTCTCGTAGCCGTGCGAGACTGGTCCTCGT
GTGACTATAGGGCTACAAAACATTTTCTCTACTCTTATCAACCACGCTACTCCAGTCCCAACACT
CGTTTTGGCCTCCCTTCGCGGACCACCCACGACGCATTGTTTTCGTTTTGTGCGAATAAAGCACC
AATGTCGTAAGCCATTCGTAAGCCAACGTAACACAACGTAAGCCCACGTAAGCCATCGTGCGCCA
TCGTCTAAGCCCATGGGACCCAACGAATCGCACACCGCGGAGAGATAGCGCATTTCCGTAAGCCA
CTCCCCGCCTGTGCCCCTCCAACCCACGGGACGGCTCCTGACGGCTCCGTATTGTTTATGCGGCA
CAAAACTACACAAAGGATCGCCAAGCACCACAAACCAAGTACGAG
Found at i:41286 original size:9 final size:9
Alignment explanation
Indices: 41260--41289 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
41250 CATATAGGTG
41260 GGCACTGGT
1 GGCACTGGT
41269 GGACACTGGT
1 GG-CACTGGT
41279 GGCACTGGT
1 GGCACTGGT
41288 GG
1 GG
41290 GCACCAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.13, C:0.20, G:0.47, T:0.20
Consensus pattern (9 bp):
GGCACTGGT
Left flanking sequence: Indices 40760 -- 41259
GTCACGGTGACGGGGTGCTCCTTCCCGTCGGCTGCAACGGTCAATTGGTGGGTGTGGCGGGTCTG
TTCGGACATCGTTGGCTCGCGGGTCAGGGTGTGTCGAAATGTTGGTCGCCCCGCATAAATGGGGT
GATAATATGCACCCGGCGATGGTGCCAGACGAGGCGGTTTGGGTGCGAGGTGGGGGTGGTCCCGG
GTTGCGAGAGAGTGCCGGTGGCTCTGGAGCAGCCGGTGTGGCTGGTGGTTGTCTCGCTACTACTA
GCCGGGCACAATGGGCTCATTAAGCCATGGGGCCTATTACGTGCATGACGCATGGTCCGATCGGA
CAGAGAGATCTAGGGATGTTGGGACTGGGCTCGCGAGTGGTTTATGCAAGTGGACGCTGATGTGA
GGTTAGTAAGCATTAAACATTGTAAACATTGTAACATTGTAAACATTGTACATTGTAAACACTGT
TTTGACAGGTTCGCTAAATTCACCAATGTGGTTACCATATAGGTG
Right flanking sequence: Indices 41290 -- 41789
GCACCAATGGCACAGTTGCATTTCTCGTAGCCGTGCGAGACTGGTCCTCGTGTGACTATAGGGCT
ACAAAACATTTTCTCTACTCTTATCAACCACGCTACTCCAGTCCCAACACTCGTTTTGGCCTCCC
TTCGCGGACCACCCACGACGCATTGTTTTCGTTTTGTGCGAATAAAGCACCAATGTCGTAAGCCA
TTCGTAAGCCAACGTAACACAACGTAAGCCCACGTAAGCCATCGTGCGCCATCGTCTAAGCCCAT
GGGACCCAACGAATCGCACACCGCGGAGAGATAGCGCATTTCCGTAAGCCACTCCCCGCCTGTGC
CCCTCCAACCCACGGGACGGCTCCTGACGGCTCCGTATTGTTTATGCGGCACAAAACTACACAAA
GGATCGCCAAGCACCACAAACCAAGTACGAGGGACGGCAACCGCCAATCCTTTTGACGCTCCAGC
GCATCTCCAGTGGGGCCACCATTTGTTGGCCATCGTACCTGGCTT
Found at i:41292 original size:10 final size:10
Alignment explanation
Indices: 41256--41293 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
41246 TTACCATATA
41256 GGTGGGCACT
1 GGTGGGCACT
*
41266 GGTGGACACT
1 GGTGGGCACT
41276 GGT-GGCACT
1 GGTGGGCACT
41285 GGTGGGCAC
1 GGTGGGCAC
41294 CAATGGCACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.13, C:0.21, G:0.47, T:0.18
Consensus pattern (10 bp):
GGTGGGCACT
Left flanking sequence: Indices 40756 -- 41255
CCAGGTCACGGTGACGGGGTGCTCCTTCCCGTCGGCTGCAACGGTCAATTGGTGGGTGTGGCGGG
TCTGTTCGGACATCGTTGGCTCGCGGGTCAGGGTGTGTCGAAATGTTGGTCGCCCCGCATAAATG
GGGTGATAATATGCACCCGGCGATGGTGCCAGACGAGGCGGTTTGGGTGCGAGGTGGGGGTGGTC
CCGGGTTGCGAGAGAGTGCCGGTGGCTCTGGAGCAGCCGGTGTGGCTGGTGGTTGTCTCGCTACT
ACTAGCCGGGCACAATGGGCTCATTAAGCCATGGGGCCTATTACGTGCATGACGCATGGTCCGAT
CGGACAGAGAGATCTAGGGATGTTGGGACTGGGCTCGCGAGTGGTTTATGCAAGTGGACGCTGAT
GTGAGGTTAGTAAGCATTAAACATTGTAAACATTGTAACATTGTAAACATTGTACATTGTAAACA
CTGTTTTGACAGGTTCGCTAAATTCACCAATGTGGTTACCATATA
Right flanking sequence: Indices 41294 -- 41793
CAATGGCACAGTTGCATTTCTCGTAGCCGTGCGAGACTGGTCCTCGTGTGACTATAGGGCTACAA
AACATTTTCTCTACTCTTATCAACCACGCTACTCCAGTCCCAACACTCGTTTTGGCCTCCCTTCG
CGGACCACCCACGACGCATTGTTTTCGTTTTGTGCGAATAAAGCACCAATGTCGTAAGCCATTCG
TAAGCCAACGTAACACAACGTAAGCCCACGTAAGCCATCGTGCGCCATCGTCTAAGCCCATGGGA
CCCAACGAATCGCACACCGCGGAGAGATAGCGCATTTCCGTAAGCCACTCCCCGCCTGTGCCCCT
CCAACCCACGGGACGGCTCCTGACGGCTCCGTATTGTTTATGCGGCACAAAACTACACAAAGGAT
CGCCAAGCACCACAAACCAAGTACGAGGGACGGCAACCGCCAATCCTTTTGACGCTCCAGCGCAT
CTCCAGTGGGGCCACCATTTGTTGGCCATCGTACCTGGCTTCACT
Found at i:41519 original size:10 final size:10
Alignment explanation
Indices: 41476--41525 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
41466 GCACCAATGT
*
41476 CGTAAGCCATT
1 CGTAAGCCA-A
41487 CGTAAGCCAA
1 CGTAAGCCAA
41497 CGTAA-CACAA
1 CGTAAGC-CAA
*
41507 CGTAAGCCCA
1 CGTAAGCCAA
41517 CGTAAGCCA
1 CGTAAGCCA
41526 TCGTGCGCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
9 1 0.03
10 23 0.68
11 10 0.29
ACGTcount: A:0.36, C:0.32, G:0.18, T:0.14
Consensus pattern (10 bp):
CGTAAGCCAA
Left flanking sequence: Indices 40976 -- 41475
CTCTGGAGCAGCCGGTGTGGCTGGTGGTTGTCTCGCTACTACTAGCCGGGCACAATGGGCTCATT
AAGCCATGGGGCCTATTACGTGCATGACGCATGGTCCGATCGGACAGAGAGATCTAGGGATGTTG
GGACTGGGCTCGCGAGTGGTTTATGCAAGTGGACGCTGATGTGAGGTTAGTAAGCATTAAACATT
GTAAACATTGTAACATTGTAAACATTGTACATTGTAAACACTGTTTTGACAGGTTCGCTAAATTC
ACCAATGTGGTTACCATATAGGTGGGCACTGGTGGACACTGGTGGCACTGGTGGGCACCAATGGC
ACAGTTGCATTTCTCGTAGCCGTGCGAGACTGGTCCTCGTGTGACTATAGGGCTACAAAACATTT
TCTCTACTCTTATCAACCACGCTACTCCAGTCCCAACACTCGTTTTGGCCTCCCTTCGCGGACCA
CCCACGACGCATTGTTTTCGTTTTGTGCGAATAAAGCACCAATGT
Right flanking sequence: Indices 41526 -- 42025
TCGTGCGCCATCGTCTAAGCCCATGGGACCCAACGAATCGCACACCGCGGAGAGATAGCGCATTT
CCGTAAGCCACTCCCCGCCTGTGCCCCTCCAACCCACGGGACGGCTCCTGACGGCTCCGTATTGT
TTATGCGGCACAAAACTACACAAAGGATCGCCAAGCACCACAAACCAAGTACGAGGGACGGCAAC
CGCCAATCCTTTTGACGCTCCAGCGCATCTCCAGTGGGGCCACCATTTGTTGGCCATCGTACCTG
GCTTCACTTGTGGTGGGGACATGCATGTCTACTTCCCAATCGGGTAATAACGGGCCGCCCCACAG
CTAGCGGGATGACAGTTGCGGGCAAGTTTAAATCCGGCCGGTACGCTACTCAATTTGGCCAACGA
TGAACCCTTTGCTTCTCCTATGGGCCATGGCCCTTGTGGCCGCCACAGGGTACGCCCCGGACGAG
GTGCAATGCCCGGCCACCAACCTTCTCCGCGAGGGGAACGACATT
Found at i:43866 original size:17 final size:17
Alignment explanation
Indices: 43844--43877 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
43834 GGGGTGCCTC
43844 AGGGGCGCGTCAGGGTA
1 AGGGGCGCGTCAGGGTA
43861 AGGGGCGCGTCAGGGTA
1 AGGGGCGCGTCAGGGTA
43878 GTATCTTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.53, T:0.12
Consensus pattern (17 bp):
AGGGGCGCGTCAGGGTA
Left flanking sequence: Indices 43344 -- 43843
AGCTCGAGAAGGACGGCGTGGTGCCCCCCTTGGTGGTGTACATGGCCAACCGGCCGTTCGACTTG
ATGCTGAACACCTCGTTATATACCCTTACCTACAAGGACAGCGAGCGCGACTTGATGGTCAAGAA
CGGGTGGAACGTCGCTTCACGGGCGAACACCACTCTCGATCTGGACTGGCCCAAGTGTATTGCGT
GTGCGATGATCCGGCGGTCCCAGGAGCGCCAGGACGTCGACCAGCTGGACGAGTGCAAGAAGTGC
TTTGACAAGTACTGCTGGGACGGGTCTGTCTACGAGGGCAACTACCTGGCTCCCGTCAACTTCAC
CACCACCGGGTTGACCAACGACCCGATGATGTCCATGCTCAACGAGCCGTCGGTGCTCAAGCGGT
TGCTTGCGCGGGCCAACGCTGCCAGCGGCTACCAGGCCAGCCTCGCGATGGTGGTTGGGGTGGCC
GCGGCGGTGGTGGCTTGTGTTAACTAATGATACCAGGGGTGCCTC
Right flanking sequence: Indices 43878 -- 44377
GTATCTTAAGGTTGTACCATGGTAGTACTTTAAGGTAGTACCTCAGGGTGTTACTTCAAGGTGGT
ACCTCATGGTAGTACCTTAGAGTAGCACCCAAGGTGGTGGCTATGGGTTGTGACTATGAATGGTG
GCTATGTAGTGGTGACTATCTCTCGAATGATAGTGATGGTGCAAGCTAGCACTACTCCTTTATGG
TACTCCTTATGGCGCTGATGGTTATTGATCATACCCACCTCCGACTTAATGAACTAATATATGGC
ATAATGATTTAATGACATGTAATCGTGATATTTATACGTAGAGGATGGACCGTCGGGGTGAGTGG
GACGTAGAGGACGACCGTCATAGGGGTGAGTGGGATCCGGTGGCAAACCCAATCTGGTTAACCAA
TCTGGTCAACCAATCTGGTTCGCTGCAACCGGGGTGCGGTTGTCAACTGGCCGCCACCCAATCGG
GACATGTAAACACCACCCCGCAAAATCGGTCCTAGGTTGTCAATA
Found at i:43902 original size:24 final size:24
Alignment explanation
Indices: 43874--43919 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
43864 GGCGCGTCAG
*
43874 GGTAGTA-TCTTAAGGTTGTACCAT
1 GGTAGTACT-TTAAGGTAGTACCAT
43898 GGTAGTACTTTAAGGTAGTACC
1 GGTAGTACTTTAAGGTAGTACC
43920 TCAGGGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (24 bp):
GGTAGTACTTTAAGGTAGTACCAT
Left flanking sequence: Indices 43374 -- 43873
TGGTGGTGTACATGGCCAACCGGCCGTTCGACTTGATGCTGAACACCTCGTTATATACCCTTACC
TACAAGGACAGCGAGCGCGACTTGATGGTCAAGAACGGGTGGAACGTCGCTTCACGGGCGAACAC
CACTCTCGATCTGGACTGGCCCAAGTGTATTGCGTGTGCGATGATCCGGCGGTCCCAGGAGCGCC
AGGACGTCGACCAGCTGGACGAGTGCAAGAAGTGCTTTGACAAGTACTGCTGGGACGGGTCTGTC
TACGAGGGCAACTACCTGGCTCCCGTCAACTTCACCACCACCGGGTTGACCAACGACCCGATGAT
GTCCATGCTCAACGAGCCGTCGGTGCTCAAGCGGTTGCTTGCGCGGGCCAACGCTGCCAGCGGCT
ACCAGGCCAGCCTCGCGATGGTGGTTGGGGTGGCCGCGGCGGTGGTGGCTTGTGTTAACTAATGA
TACCAGGGGTGCCTCAGGGGCGCGTCAGGGTAAGGGGCGCGTCAG
Right flanking sequence: Indices 43920 -- 44419
TCAGGGTGTTACTTCAAGGTGGTACCTCATGGTAGTACCTTAGAGTAGCACCCAAGGTGGTGGCT
ATGGGTTGTGACTATGAATGGTGGCTATGTAGTGGTGACTATCTCTCGAATGATAGTGATGGTGC
AAGCTAGCACTACTCCTTTATGGTACTCCTTATGGCGCTGATGGTTATTGATCATACCCACCTCC
GACTTAATGAACTAATATATGGCATAATGATTTAATGACATGTAATCGTGATATTTATACGTAGA
GGATGGACCGTCGGGGTGAGTGGGACGTAGAGGACGACCGTCATAGGGGTGAGTGGGATCCGGTG
GCAAACCCAATCTGGTTAACCAATCTGGTCAACCAATCTGGTTCGCTGCAACCGGGGTGCGGTTG
TCAACTGGCCGCCACCCAATCGGGACATGTAAACACCACCCCGCAAAATCGGTCCTAGGTTGTCA
ATACAACGGAATGCAAACCCCGGTCCAAAAATAACCAGGGGAGAA
Found at i:43957 original size:13 final size:13
Alignment explanation
Indices: 43898--43959 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
43888 GTTGTACCAT
* *
43898 GGTAGTACTTTAA
1 GGTAGTACCTCAA
*
43911 GGTAGTACCTCAG
1 GGTAGTACCTCAA
*
43924 GGT-GTTACTTCAA
1 GGTAG-TACCTCAA
* *
43937 GGTGGTACCTCAT
1 GGTAGTACCTCAA
43950 GGTAGTACCT
1 GGTAGTACCT
43960 TAGAGTAGCA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 1 0.03
13 37 0.95
14 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (13 bp):
GGTAGTACCTCAA
Left flanking sequence: Indices 43398 -- 43897
CGTTCGACTTGATGCTGAACACCTCGTTATATACCCTTACCTACAAGGACAGCGAGCGCGACTTG
ATGGTCAAGAACGGGTGGAACGTCGCTTCACGGGCGAACACCACTCTCGATCTGGACTGGCCCAA
GTGTATTGCGTGTGCGATGATCCGGCGGTCCCAGGAGCGCCAGGACGTCGACCAGCTGGACGAGT
GCAAGAAGTGCTTTGACAAGTACTGCTGGGACGGGTCTGTCTACGAGGGCAACTACCTGGCTCCC
GTCAACTTCACCACCACCGGGTTGACCAACGACCCGATGATGTCCATGCTCAACGAGCCGTCGGT
GCTCAAGCGGTTGCTTGCGCGGGCCAACGCTGCCAGCGGCTACCAGGCCAGCCTCGCGATGGTGG
TTGGGGTGGCCGCGGCGGTGGTGGCTTGTGTTAACTAATGATACCAGGGGTGCCTCAGGGGCGCG
TCAGGGTAAGGGGCGCGTCAGGGTAGTATCTTAAGGTTGTACCAT
Right flanking sequence: Indices 43960 -- 44459
TAGAGTAGCACCCAAGGTGGTGGCTATGGGTTGTGACTATGAATGGTGGCTATGTAGTGGTGACT
ATCTCTCGAATGATAGTGATGGTGCAAGCTAGCACTACTCCTTTATGGTACTCCTTATGGCGCTG
ATGGTTATTGATCATACCCACCTCCGACTTAATGAACTAATATATGGCATAATGATTTAATGACA
TGTAATCGTGATATTTATACGTAGAGGATGGACCGTCGGGGTGAGTGGGACGTAGAGGACGACCG
TCATAGGGGTGAGTGGGATCCGGTGGCAAACCCAATCTGGTTAACCAATCTGGTCAACCAATCTG
GTTCGCTGCAACCGGGGTGCGGTTGTCAACTGGCCGCCACCCAATCGGGACATGTAAACACCACC
CCGCAAAATCGGTCCTAGGTTGTCAATACAACGGAATGCAAACCCCGGTCCAAAAATAACCAGGG
GAGAAGTAAAGGTCATGGGTCATAAGTCGTAAGTCGTAAGCATGC
Found at i:44211 original size:31 final size:31
Alignment explanation
Indices: 44173--44237 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 31
44163 TGATATTTAT
*
44173 ACGTAGAGGATGGACCGTC-GGGGTGAGTGGG
1 ACGTAGAGGA-CGACCGTCAGGGGTGAGTGGG
44204 ACGTAGAGGACGACCGTCATAGGGGTGAGTGGG
1 ACGTAGAGGACGACCGTC--AGGGGTGAGTGGG
44237 A
1 A
44238 TCCGGTGGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 7 0.23
31 10 0.33
33 13 0.43
ACGTcount: A:0.23, C:0.14, G:0.48, T:0.15
Consensus pattern (31 bp):
ACGTAGAGGACGACCGTCAGGGGTGAGTGGG
Left flanking sequence: Indices 43673 -- 44172
ACCGGGTTGACCAACGACCCGATGATGTCCATGCTCAACGAGCCGTCGGTGCTCAAGCGGTTGCT
TGCGCGGGCCAACGCTGCCAGCGGCTACCAGGCCAGCCTCGCGATGGTGGTTGGGGTGGCCGCGG
CGGTGGTGGCTTGTGTTAACTAATGATACCAGGGGTGCCTCAGGGGCGCGTCAGGGTAAGGGGCG
CGTCAGGGTAGTATCTTAAGGTTGTACCATGGTAGTACTTTAAGGTAGTACCTCAGGGTGTTACT
TCAAGGTGGTACCTCATGGTAGTACCTTAGAGTAGCACCCAAGGTGGTGGCTATGGGTTGTGACT
ATGAATGGTGGCTATGTAGTGGTGACTATCTCTCGAATGATAGTGATGGTGCAAGCTAGCACTAC
TCCTTTATGGTACTCCTTATGGCGCTGATGGTTATTGATCATACCCACCTCCGACTTAATGAACT
AATATATGGCATAATGATTTAATGACATGTAATCGTGATATTTAT
Right flanking sequence: Indices 44238 -- 44737
TCCGGTGGCAAACCCAATCTGGTTAACCAATCTGGTCAACCAATCTGGTTCGCTGCAACCGGGGT
GCGGTTGTCAACTGGCCGCCACCCAATCGGGACATGTAAACACCACCCCGCAAAATCGGTCCTAG
GTTGTCAATACAACGGAATGCAAACCCCGGTCCAAAAATAACCAGGGGAGAAGTAAAGGTCATGG
GTCATAAGTCGTAAGTCGTAAGCATGCTAGGCAATCACCATCTCCAGCGGGTGCACGAGCTCGCT
CTCGGCAAAGTCGCGCTTGGAGGCGTGGTTGAACGTGTCCACCACCTCGGCCTCGTTGCTCTTGG
TGGGCCACGGCAACGGGTAGTGGTCAACGTGGACGATGTTGCGGACGTAGCGCTGGTGGTGGTTG
GCGTCACGGAGCTGGCGCAACTCGCGGTCCAGACGGCCCGCGTTGGGCGCGGTGTACATGGCGCC
GTCAATGACCACCGGGGCCCCGCATACCACAGCCAACAACGAAGA
Found at i:44269 original size:13 final size:13
Alignment explanation
Indices: 44251--44287 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
44241 GGTGGCAAAC
44251 CCAATCTGGTTAA
1 CCAATCTGGTTAA
*
44264 CCAATCTGGTCAA
1 CCAATCTGGTTAA
44277 CCAATCTGGTT
1 CCAATCTGGTT
44288 CGCTGCAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (13 bp):
CCAATCTGGTTAA
Left flanking sequence: Indices 43751 -- 44250
GCTGCCAGCGGCTACCAGGCCAGCCTCGCGATGGTGGTTGGGGTGGCCGCGGCGGTGGTGGCTTG
TGTTAACTAATGATACCAGGGGTGCCTCAGGGGCGCGTCAGGGTAAGGGGCGCGTCAGGGTAGTA
TCTTAAGGTTGTACCATGGTAGTACTTTAAGGTAGTACCTCAGGGTGTTACTTCAAGGTGGTACC
TCATGGTAGTACCTTAGAGTAGCACCCAAGGTGGTGGCTATGGGTTGTGACTATGAATGGTGGCT
ATGTAGTGGTGACTATCTCTCGAATGATAGTGATGGTGCAAGCTAGCACTACTCCTTTATGGTAC
TCCTTATGGCGCTGATGGTTATTGATCATACCCACCTCCGACTTAATGAACTAATATATGGCATA
ATGATTTAATGACATGTAATCGTGATATTTATACGTAGAGGATGGACCGTCGGGGTGAGTGGGAC
GTAGAGGACGACCGTCATAGGGGTGAGTGGGATCCGGTGGCAAAC
Right flanking sequence: Indices 44288 -- 44787
CGCTGCAACCGGGGTGCGGTTGTCAACTGGCCGCCACCCAATCGGGACATGTAAACACCACCCCG
CAAAATCGGTCCTAGGTTGTCAATACAACGGAATGCAAACCCCGGTCCAAAAATAACCAGGGGAG
AAGTAAAGGTCATGGGTCATAAGTCGTAAGTCGTAAGCATGCTAGGCAATCACCATCTCCAGCGG
GTGCACGAGCTCGCTCTCGGCAAAGTCGCGCTTGGAGGCGTGGTTGAACGTGTCCACCACCTCGG
CCTCGTTGCTCTTGGTGGGCCACGGCAACGGGTAGTGGTCAACGTGGACGATGTTGCGGACGTAG
CGCTGGTGGTGGTTGGCGTCACGGAGCTGGCGCAACTCGCGGTCCAGACGGCCCGCGTTGGGCGC
GGTGTACATGGCGCCGTCAATGACCACCGGGGCCCCGCATACCACAGCCAACAACGAAGACACGA
TAATAGAAGCTCTCATTCTTGGTGGTTTCAGTGGGGAAGGCCCGC
Found at i:45570 original size:20 final size:20
Alignment explanation
Indices: 45539--45611 Score: 128
Period size: 20 Copynumber: 3.6 Consensus size: 20
45529 ACACGGTCCA
*
45539 GCCAGCTAGCAACTGGGGCG
1 GCCAGCTCGCAACTGGGGCG
*
45559 GCGAGCTCGCAACTGGGGCG
1 GCCAGCTCGCAACTGGGGCG
45579 GCCAGCTCGCAACTGGGGCG
1 GCCAGCTCGCAACTGGGGCG
45599 GCCAGCTCGCAAC
1 GCCAGCTCGCAAC
45612 GTTGCTTCTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.18, C:0.34, G:0.38, T:0.10
Consensus pattern (20 bp):
GCCAGCTCGCAACTGGGGCG
Left flanking sequence: Indices 45039 -- 45538
GGTCGCGATATTATGAACACGGATAAAGGCGGAGTCGCGGCTGTGTCGAGAAGAGAACGGTGCTG
GCCAAGATGCGAGGTTGGTCATAGCTGGTTGTTTAGCTGGTGGTCATCGCTGGTTAATTACCGCT
TTCGCTGTCCCTCTACTTGCTACATTCCCACTCCCCTCCTTGTTTCAGGTTAGATTCCCGGGGTG
CTCCCAGTTTCGCGACGGAATGTTGCACAAATGTTCGCAAACGGTGTCCACGCCAGCCGCACCAG
TGGTTGCCCCCCCAACCAGCGCGTTCGATGCGAGGTACCTTGAGCCGAAGGTCTGGAACAGCGTT
TTGTGTCAACCGAGCAACGTGGAGCCGCGGCGTAAGCGGTGCTACTCGAGCAGTGAGGTGAAACG
GACGGTGGAACGGGGCTGAACCGTAGATCTGACACTAGTGTCGCATAGGCCGTGCCTGCAGCGAA
GGAGTTGACGTGCGACACGATGGCCGAGACCCCCGACACGGTCCA
Right flanking sequence: Indices 45612 -- 46111
GTTGCTTCTAGACTCGTGGTCAGAGGCGACAGGGTGAGGCATGAAGGTGTAGGGGCTAGGGGACT
AGATAGACTGTTAGGACGCGATTTGAACCGCGTGTAGCTAAAACCATTAGTCACTAGGCCACTGG
GATCAGCGATGTGAACTAAGCGATGGTCTAAGAGACTGGTTTCAAGAAAATATGCTGGGCGTCCA
TGGGCTGGACAGTGGGCTGGAAGGACTGGAAGGGCTGGAGGGGCTGGACAGGGCTAGAACCACTC
CTTACGCGCTACCTACCGCACCCTTTGTGTCAAATGAATACTGGTCGCGCTTTCGACCGACGCGC
TCGGTTGCCAGTTGGTGGTACAGCCAACCAGGCGGGACTACAGCAAGGCGGAGTAAAAAGAACTG
TGTTGAACACCAAATAAACTAGCTAAAGGGAGGGGAAATATGGCGGAGCACGCAAAGAGTTGACT
AACTTCTGCGATTGCTCATTCTAAAGATTCGTGGGGGTGTCCTGG
Found at i:45850 original size:9 final size:9
Alignment explanation
Indices: 45820--45861 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
45810 GCTGGACAGT
45820 GGGCTGGAA
1 GGGCTGGAA
*
45829 GGACTGGAA
1 GGGCTGGAA
*
45838 GGGCTGGAG
1 GGGCTGGAA
45847 GGGCTGGACA
1 GGGCTGGA-A
45857 GGGCT
1 GGGCT
45862 AGAACCACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
9 23 0.82
10 5 0.18
ACGTcount: A:0.19, C:0.14, G:0.55, T:0.12
Consensus pattern (9 bp):
GGGCTGGAA
Left flanking sequence: Indices 45320 -- 45819
CGTTCGATGCGAGGTACCTTGAGCCGAAGGTCTGGAACAGCGTTTTGTGTCAACCGAGCAACGTG
GAGCCGCGGCGTAAGCGGTGCTACTCGAGCAGTGAGGTGAAACGGACGGTGGAACGGGGCTGAAC
CGTAGATCTGACACTAGTGTCGCATAGGCCGTGCCTGCAGCGAAGGAGTTGACGTGCGACACGAT
GGCCGAGACCCCCGACACGGTCCAGCCAGCTAGCAACTGGGGCGGCGAGCTCGCAACTGGGGCGG
CCAGCTCGCAACTGGGGCGGCCAGCTCGCAACGTTGCTTCTAGACTCGTGGTCAGAGGCGACAGG
GTGAGGCATGAAGGTGTAGGGGCTAGGGGACTAGATAGACTGTTAGGACGCGATTTGAACCGCGT
GTAGCTAAAACCATTAGTCACTAGGCCACTGGGATCAGCGATGTGAACTAAGCGATGGTCTAAGA
GACTGGTTTCAAGAAAATATGCTGGGCGTCCATGGGCTGGACAGT
Right flanking sequence: Indices 45862 -- 46361
AGAACCACTCCTTACGCGCTACCTACCGCACCCTTTGTGTCAAATGAATACTGGTCGCGCTTTCG
ACCGACGCGCTCGGTTGCCAGTTGGTGGTACAGCCAACCAGGCGGGACTACAGCAAGGCGGAGTA
AAAAGAACTGTGTTGAACACCAAATAAACTAGCTAAAGGGAGGGGAAATATGGCGGAGCACGCAA
AGAGTTGACTAACTTCTGCGATTGCTCATTCTAAAGATTCGTGGGGGTGTCCTGGGCATCGAAAC
AGAAGAGAATAGACCGAAGTTTAGGAGGGCGACTTCACTTTTGGGACGGAAGATCGACGTTTTGC
AAGAACGCTCCTTGGAGATTGCCCCGTTCACTGTAGGTACAGTAGATCGCGTTACCACCACCACA
CTTGCGGATGGCACAACCAAGCTTCGTCGAGGTTTTCCACACGAGTTGGGTGAAATGGCCGGTCA
GTGAAGAGAAGGGGTCACCCTTGCGATATAATTTGTACTCGTCGT
Found at i:46651 original size:27 final size:27
Alignment explanation
Indices: 46610--46698 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
46600 GTTGTCGGTG
*
46610 GTAGGTTTGGTGGGCTTGGCGTCCTCA
1 GTAGGTTTGGTGGGCTTGGAGTCCTCA
*
46637 GTGGGTTTGGTGGGCTTGGAGTCCTCA
1 GTAGGTTTGGTGGGCTTGGAGTCCTCA
* * * * *
46664 GTAGGTTTAGTGGGCGTAGTGTTCTCA
1 GTAGGTTTGGTGGGCTTGGAGTCCTCA
46691 GTAGGTTT
1 GTAGGTTT
46699 AGCGGTATCA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.10, C:0.13, G:0.40, T:0.36
Consensus pattern (27 bp):
GTAGGTTTGGTGGGCTTGGAGTCCTCA
Left flanking sequence: Indices 46110 -- 46609
GGGCATCGAAACAGAAGAGAATAGACCGAAGTTTAGGAGGGCGACTTCACTTTTGGGACGGAAGA
TCGACGTTTTGCAAGAACGCTCCTTGGAGATTGCCCCGTTCACTGTAGGTACAGTAGATCGCGTT
ACCACCACCACACTTGCGGATGGCACAACCAAGCTTCGTCGAGGTTTTCCACACGAGTTGGGTGA
AATGGCCGGTCAGTGAAGAGAAGGGGTCACCCTTGCGATATAATTTGTACTCGTCGTACCAGCCA
TCCACGGCGGCCTTGGCGTCCACGGCGCCTCCTTGAATCAAGTTTTGCCCAAAGCTAATCTTGTC
GTCATGCTTGAACGCACACTGTACGTTGTTTGCCCACGTTTCAGCCTGTTGTTCAGCCTCGGCGT
CCCACGACATCGGGGGAGCATTGCACAAAGCCCGCTTTTCGTTGTGGAGCCGGAGGATCTCTTGT
TTCTGTTGCGCACTCATGGAACCACCAGACGAGACGTTGTCGGTG
Right flanking sequence: Indices 46699 -- 47198
AGCGGTATCAGGGGTGATCTGCTTTTGCTGGCCCTCAATATCGATCTTCTTGTCCTGACTCTTGT
CAGCAGACGACTGAGTAGTAGGAGCAGTAGTAGGAGCAGTAGTAGCCGGAGCAGTCGGGGCAGCA
GGAGAGTTGGCACCGGTGGTCGCTGCGTTGGCGTCCTCCTTCGGGGTCTGGGTAGCCCCGTTCTT
GGTCCGGATCAACACGTTGACCGCCTTGGGGCCCACCGCGTCCCAGGCTTCCACAGAGGTGGCCT
CAGCGTTGTCCTGGACGGGAGTGGGGTCAGGCACGGGGTAGTCCTGCTGGGGAACGTCCCCTCCG
ACCTTGGACACGCAGTCACGGAAGGTGCGGTCCTCGCCAAACCAGTTTTTGTCGACAACCAAGTC
GTCCAGGTTGATCTTTGCGGCCTGGGTGGTGGCAGGAGGAGACGTCTCGTGGGTCTGGGCGGGCA
GCTCGTCAGCAGCCTGAGCCGCGTCGGTCTTCTCCTCGACCATCT
Found at i:46794 original size:12 final size:12
Alignment explanation
Indices: 46777--46808 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
46767 CAGACGACTG
46777 AGTAGTAGGAGC
1 AGTAGTAGGAGC
46789 AGTAGTAGGAGC
1 AGTAGTAGGAGC
46801 AGTAGTAG
1 AGTAGTAG
46809 CCGGAGCAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.41, T:0.19
Consensus pattern (12 bp):
AGTAGTAGGAGC
Left flanking sequence: Indices 46277 -- 46776
GTCGAGGTTTTCCACACGAGTTGGGTGAAATGGCCGGTCAGTGAAGAGAAGGGGTCACCCTTGCG
ATATAATTTGTACTCGTCGTACCAGCCATCCACGGCGGCCTTGGCGTCCACGGCGCCTCCTTGAA
TCAAGTTTTGCCCAAAGCTAATCTTGTCGTCATGCTTGAACGCACACTGTACGTTGTTTGCCCAC
GTTTCAGCCTGTTGTTCAGCCTCGGCGTCCCACGACATCGGGGGAGCATTGCACAAAGCCCGCTT
TTCGTTGTGGAGCCGGAGGATCTCTTGTTTCTGTTGCGCACTCATGGAACCACCAGACGAGACGT
TGTCGGTGGTAGGTTTGGTGGGCTTGGCGTCCTCAGTGGGTTTGGTGGGCTTGGAGTCCTCAGTA
GGTTTAGTGGGCGTAGTGTTCTCAGTAGGTTTAGCGGTATCAGGGGTGATCTGCTTTTGCTGGCC
CTCAATATCGATCTTCTTGTCCTGACTCTTGTCAGCAGACGACTG
Right flanking sequence: Indices 46809 -- 47308
CCGGAGCAGTCGGGGCAGCAGGAGAGTTGGCACCGGTGGTCGCTGCGTTGGCGTCCTCCTTCGGG
GTCTGGGTAGCCCCGTTCTTGGTCCGGATCAACACGTTGACCGCCTTGGGGCCCACCGCGTCCCA
GGCTTCCACAGAGGTGGCCTCAGCGTTGTCCTGGACGGGAGTGGGGTCAGGCACGGGGTAGTCCT
GCTGGGGAACGTCCCCTCCGACCTTGGACACGCAGTCACGGAAGGTGCGGTCCTCGCCAAACCAG
TTTTTGTCGACAACCAAGTCGTCCAGGTTGATCTTTGCGGCCTGGGTGGTGGCAGGAGGAGACGT
CTCGTGGGTCTGGGCGGGCAGCTCGTCAGCAGCCTGAGCCGCGTCGGTCTTCTCCTCGACCATCT
TCACGTTGTAGTGGGCGTCGTTGGCGAGGGCAGCGTCGTCGTTGGCCACGGCCTCGTCGTTCAGG
GGAGCGGAGGCAGGGCCAGCGCCAGCGGAGGGACCAGCACCGGCG
Found at i:47406 original size:12 final size:12
Alignment explanation
Indices: 47391--47480 Score: 108
Period size: 12 Copynumber: 7.5 Consensus size: 12
47381 TGGGACTCGC
47391 CCTGAGACTGGT
1 CCTGAGACTGGT
47403 CCTGAGACTGGT
1 CCTGAGACTGGT
47415 CCTGAGACTGGT
1 CCTGAGACTGGT
47427 CCTGAGACTGGT
1 CCTGAGACTGGT
* * **
47439 CTTGGGGTTGGT
1 CCTGAGACTGGT
**
47451 CCTGAGGTTGGT
1 CCTGAGACTGGT
**
47463 CCTGAGGTTGGT
1 CCTGAGACTGGT
47475 CCTGAG
1 CCTGAG
47481 GTTGGTCTTG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 72 1.00
ACGTcount: A:0.12, C:0.21, G:0.38, T:0.29
Consensus pattern (12 bp):
CCTGAGACTGGT
Left flanking sequence: Indices 46891 -- 47390
CTTGGTCCGGATCAACACGTTGACCGCCTTGGGGCCCACCGCGTCCCAGGCTTCCACAGAGGTGG
CCTCAGCGTTGTCCTGGACGGGAGTGGGGTCAGGCACGGGGTAGTCCTGCTGGGGAACGTCCCCT
CCGACCTTGGACACGCAGTCACGGAAGGTGCGGTCCTCGCCAAACCAGTTTTTGTCGACAACCAA
GTCGTCCAGGTTGATCTTTGCGGCCTGGGTGGTGGCAGGAGGAGACGTCTCGTGGGTCTGGGCGG
GCAGCTCGTCAGCAGCCTGAGCCGCGTCGGTCTTCTCCTCGACCATCTTCACGTTGTAGTGGGCG
TCGTTGGCGAGGGCAGCGTCGTCGTTGGCCACGGCCTCGTCGTTCAGGGGAGCGGAGGCAGGGCC
AGCGCCAGCGGAGGGACCAGCACCGGCGGTAGCCTTTTCGGTGGTCTGGTCCGATTGGTCTACCG
GCTGGGCCTTTTGGACCAGAGGAGCCTGAGAATCTTGGGACTCGC
Right flanking sequence: Indices 47481 -- 47980
GTTGGTCTTGGGACTGTTCCTCAGGCTGGTCAGGTTGGTCCTGCGACTGTTCCTCAGGCTGGTCG
GGTTGGTTCTGAGGCTGCTCTTCAGTTTGGCCCTCCTGACCACCCTCACCACCCTGAGCAGGGCC
CGCAATGGGCTCGCCTTGCTCGTTGACGTGAAGGATCTTAAAGTTGGGGCCTTGCTGCCCCGCAA
AGGGGTCGGGTTCAGGCACAAACTTCCAACCGTTCTTAGTGTAGAGCTCCTTGCGGGACTGTTCC
CTCTGTTTGTACCAGTCGGCCCAGGACTGGAATCTCTTCGCGCGGGGCACCTCAGCTCTCTTCTC
CACCACGGGACTACCCACATAGGCAACAGTGCTGCCCGGAAGACCAGGAATGTTTTCCTGGGCGG
GCGCGGCCACGGGAAGCGCATCAACAAGCCCACCGGCAATCACTGCGAGGGCTGCAAAATTGAAC
AAATACATAAGGAGTGGACAGGTTCAGAACTTAGGGGTAAGGAGT
Found at i:47453 original size:48 final size:48
Alignment explanation
Indices: 47399--47492 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
47389 GCCCTGAGAC
47399 TGGTCCTGAGACTGGTCCTGAGACTGGTCCTGAGACTGGTCTTGGGGT
1 TGGTCCTGAGACTGGTCCTGAGACTGGTCCTGAGACTGGTCTTGGGGT
** ** **
47447 TGGTCCTGAGGTTGGTCCTGAGGTTGGTCCTGAGGTTGGTCTTGGG
1 TGGTCCTGAGACTGGTCCTGAGACTGGTCCTGAGACTGGTCTTGGG
47493 ACTGTTCCTC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.10, C:0.18, G:0.40, T:0.32
Consensus pattern (48 bp):
TGGTCCTGAGACTGGTCCTGAGACTGGTCCTGAGACTGGTCTTGGGGT
Left flanking sequence: Indices 46899 -- 47398
GGATCAACACGTTGACCGCCTTGGGGCCCACCGCGTCCCAGGCTTCCACAGAGGTGGCCTCAGCG
TTGTCCTGGACGGGAGTGGGGTCAGGCACGGGGTAGTCCTGCTGGGGAACGTCCCCTCCGACCTT
GGACACGCAGTCACGGAAGGTGCGGTCCTCGCCAAACCAGTTTTTGTCGACAACCAAGTCGTCCA
GGTTGATCTTTGCGGCCTGGGTGGTGGCAGGAGGAGACGTCTCGTGGGTCTGGGCGGGCAGCTCG
TCAGCAGCCTGAGCCGCGTCGGTCTTCTCCTCGACCATCTTCACGTTGTAGTGGGCGTCGTTGGC
GAGGGCAGCGTCGTCGTTGGCCACGGCCTCGTCGTTCAGGGGAGCGGAGGCAGGGCCAGCGCCAG
CGGAGGGACCAGCACCGGCGGTAGCCTTTTCGGTGGTCTGGTCCGATTGGTCTACCGGCTGGGCC
TTTTGGACCAGAGGAGCCTGAGAATCTTGGGACTCGCCCTGAGAC
Right flanking sequence: Indices 47493 -- 47992
ACTGTTCCTCAGGCTGGTCAGGTTGGTCCTGCGACTGTTCCTCAGGCTGGTCGGGTTGGTTCTGA
GGCTGCTCTTCAGTTTGGCCCTCCTGACCACCCTCACCACCCTGAGCAGGGCCCGCAATGGGCTC
GCCTTGCTCGTTGACGTGAAGGATCTTAAAGTTGGGGCCTTGCTGCCCCGCAAAGGGGTCGGGTT
CAGGCACAAACTTCCAACCGTTCTTAGTGTAGAGCTCCTTGCGGGACTGTTCCCTCTGTTTGTAC
CAGTCGGCCCAGGACTGGAATCTCTTCGCGCGGGGCACCTCAGCTCTCTTCTCCACCACGGGACT
ACCCACATAGGCAACAGTGCTGCCCGGAAGACCAGGAATGTTTTCCTGGGCGGGCGCGGCCACGG
GAAGCGCATCAACAAGCCCACCGGCAATCACTGCGAGGGCTGCAAAATTGAACAAATACATAAGG
AGTGGACAGGTTCAGAACTTAGGGGTAAGGAGTGACAAAAGTTGG
Found at i:47484 original size:36 final size:36
Alignment explanation
Indices: 47391--47544 Score: 134
Period size: 36 Copynumber: 4.4 Consensus size: 36
47381 TGGGACTCGC
**
47391 CCTGAGACTGGTCCTGAGACTGGTCCTGAGACTGGT
1 CCTGAGACTGGTCCTGAGGTTGGTCCTGAGACTGGT
* * **
47427 CCTGAGACTGGTCTTGGGGTTGGTCCTGAGGTTGGT
1 CCTGAGACTGGTCCTGAGGTTGGTCCTGAGACTGGT
** * * *
47463 CCTGAGGTTGGTCCTGAGGTTGGTCTTGGGACTGTT
1 CCTGAGACTGGTCCTGAGGTTGGTCCTGAGACTGGT
* * * *
47499 CCTCAGGCTGGT-C--AGGTTGGTCCTGCGACTGTT
1 CCTGAGACTGGTCCTGAGGTTGGTCCTGAGACTGGT
* *
47532 CCTCAGGCTGGTC
1 CCTGAGACTGGTC
47545 GGGTTGGTTC
Statistics
Matches: 98, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
33 30 0.31
35 1 0.01
36 67 0.68
ACGTcount: A:0.10, C:0.23, G:0.36, T:0.31
Consensus pattern (36 bp):
CCTGAGACTGGTCCTGAGGTTGGTCCTGAGACTGGT
Left flanking sequence: Indices 46891 -- 47390
CTTGGTCCGGATCAACACGTTGACCGCCTTGGGGCCCACCGCGTCCCAGGCTTCCACAGAGGTGG
CCTCAGCGTTGTCCTGGACGGGAGTGGGGTCAGGCACGGGGTAGTCCTGCTGGGGAACGTCCCCT
CCGACCTTGGACACGCAGTCACGGAAGGTGCGGTCCTCGCCAAACCAGTTTTTGTCGACAACCAA
GTCGTCCAGGTTGATCTTTGCGGCCTGGGTGGTGGCAGGAGGAGACGTCTCGTGGGTCTGGGCGG
GCAGCTCGTCAGCAGCCTGAGCCGCGTCGGTCTTCTCCTCGACCATCTTCACGTTGTAGTGGGCG
TCGTTGGCGAGGGCAGCGTCGTCGTTGGCCACGGCCTCGTCGTTCAGGGGAGCGGAGGCAGGGCC
AGCGCCAGCGGAGGGACCAGCACCGGCGGTAGCCTTTTCGGTGGTCTGGTCCGATTGGTCTACCG
GCTGGGCCTTTTGGACCAGAGGAGCCTGAGAATCTTGGGACTCGC
Right flanking sequence: Indices 47545 -- 48044
GGGTTGGTTCTGAGGCTGCTCTTCAGTTTGGCCCTCCTGACCACCCTCACCACCCTGAGCAGGGC
CCGCAATGGGCTCGCCTTGCTCGTTGACGTGAAGGATCTTAAAGTTGGGGCCTTGCTGCCCCGCA
AAGGGGTCGGGTTCAGGCACAAACTTCCAACCGTTCTTAGTGTAGAGCTCCTTGCGGGACTGTTC
CCTCTGTTTGTACCAGTCGGCCCAGGACTGGAATCTCTTCGCGCGGGGCACCTCAGCTCTCTTCT
CCACCACGGGACTACCCACATAGGCAACAGTGCTGCCCGGAAGACCAGGAATGTTTTCCTGGGCG
GGCGCGGCCACGGGAAGCGCATCAACAAGCCCACCGGCAATCACTGCGAGGGCTGCAAAATTGAA
CAAATACATAAGGAGTGGACAGGTTCAGAACTTAGGGGTAAGGAGTGACAAAAGTTGGAGTGAAC
AGAACGCTGGAGTCGACAGCGACGCAACACCGCCATTTTAACTAT
Found at i:47501 original size:24 final size:24
Alignment explanation
Indices: 47391--47511 Score: 109
Period size: 24 Copynumber: 5.0 Consensus size: 24
47381 TGGGACTCGC
* *
47391 CCTGAGACTGGTCCTGAGACTGGT
1 CCTGGGACTGGTCCTGAGGCTGGT
* *
47415 CCTGAGACTGGTCCTGAGACTGGT
1 CCTGGGACTGGTCCTGAGGCTGGT
* ** *
47439 CTTGGGGTTGGTCCTGAGGTTGGT
1 CCTGGGACTGGTCCTGAGGCTGGT
* *
47463 CCTGAGG-TTGGTCCTGAGGTTGGT
1 CCTG-GGACTGGTCCTGAGGCTGGT
* * *
47487 CTTGGGACTGTTCCTCAGGCTGGT
1 CCTGGGACTGGTCCTGAGGCTGGT
47511 C
1 C
47512 AGGTTGGTCC
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
23 2 0.02
24 79 0.95
25 2 0.02
ACGTcount: A:0.11, C:0.21, G:0.37, T:0.31
Consensus pattern (24 bp):
CCTGGGACTGGTCCTGAGGCTGGT
Left flanking sequence: Indices 46891 -- 47390
CTTGGTCCGGATCAACACGTTGACCGCCTTGGGGCCCACCGCGTCCCAGGCTTCCACAGAGGTGG
CCTCAGCGTTGTCCTGGACGGGAGTGGGGTCAGGCACGGGGTAGTCCTGCTGGGGAACGTCCCCT
CCGACCTTGGACACGCAGTCACGGAAGGTGCGGTCCTCGCCAAACCAGTTTTTGTCGACAACCAA
GTCGTCCAGGTTGATCTTTGCGGCCTGGGTGGTGGCAGGAGGAGACGTCTCGTGGGTCTGGGCGG
GCAGCTCGTCAGCAGCCTGAGCCGCGTCGGTCTTCTCCTCGACCATCTTCACGTTGTAGTGGGCG
TCGTTGGCGAGGGCAGCGTCGTCGTTGGCCACGGCCTCGTCGTTCAGGGGAGCGGAGGCAGGGCC
AGCGCCAGCGGAGGGACCAGCACCGGCGGTAGCCTTTTCGGTGGTCTGGTCCGATTGGTCTACCG
GCTGGGCCTTTTGGACCAGAGGAGCCTGAGAATCTTGGGACTCGC
Right flanking sequence: Indices 47512 -- 48011
AGGTTGGTCCTGCGACTGTTCCTCAGGCTGGTCGGGTTGGTTCTGAGGCTGCTCTTCAGTTTGGC
CCTCCTGACCACCCTCACCACCCTGAGCAGGGCCCGCAATGGGCTCGCCTTGCTCGTTGACGTGA
AGGATCTTAAAGTTGGGGCCTTGCTGCCCCGCAAAGGGGTCGGGTTCAGGCACAAACTTCCAACC
GTTCTTAGTGTAGAGCTCCTTGCGGGACTGTTCCCTCTGTTTGTACCAGTCGGCCCAGGACTGGA
ATCTCTTCGCGCGGGGCACCTCAGCTCTCTTCTCCACCACGGGACTACCCACATAGGCAACAGTG
CTGCCCGGAAGACCAGGAATGTTTTCCTGGGCGGGCGCGGCCACGGGAAGCGCATCAACAAGCCC
ACCGGCAATCACTGCGAGGGCTGCAAAATTGAACAAATACATAAGGAGTGGACAGGTTCAGAACT
TAGGGGTAAGGAGTGACAAAAGTTGGAGTGAACAGAACGCTGGAG
Found at i:47529 original size:33 final size:33
Alignment explanation
Indices: 47479--47552 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 33
47469 GTTGGTCCTG
* *
47479 AGGTTGGTCTTGGGACTGTTCCTCAGGCTGGTC
1 AGGTTGGTCCTGCGACTGTTCCTCAGGCTGGTC
47512 AGGTTGGTCCTGCGACTGTTCCTCAGGCTGGTC
1 AGGTTGGTCCTGCGACTGTTCCTCAGGCTGGTC
*
47545 GGGTTGGT
1 AGGTTGGT
47553 TCTGAGGCTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.08, C:0.22, G:0.38, T:0.32
Consensus pattern (33 bp):
AGGTTGGTCCTGCGACTGTTCCTCAGGCTGGTC
Left flanking sequence: Indices 46979 -- 47478
GTGGGGTCAGGCACGGGGTAGTCCTGCTGGGGAACGTCCCCTCCGACCTTGGACACGCAGTCACG
GAAGGTGCGGTCCTCGCCAAACCAGTTTTTGTCGACAACCAAGTCGTCCAGGTTGATCTTTGCGG
CCTGGGTGGTGGCAGGAGGAGACGTCTCGTGGGTCTGGGCGGGCAGCTCGTCAGCAGCCTGAGCC
GCGTCGGTCTTCTCCTCGACCATCTTCACGTTGTAGTGGGCGTCGTTGGCGAGGGCAGCGTCGTC
GTTGGCCACGGCCTCGTCGTTCAGGGGAGCGGAGGCAGGGCCAGCGCCAGCGGAGGGACCAGCAC
CGGCGGTAGCCTTTTCGGTGGTCTGGTCCGATTGGTCTACCGGCTGGGCCTTTTGGACCAGAGGA
GCCTGAGAATCTTGGGACTCGCCCTGAGACTGGTCCTGAGACTGGTCCTGAGACTGGTCCTGAGA
CTGGTCTTGGGGTTGGTCCTGAGGTTGGTCCTGAGGTTGGTCCTG
Right flanking sequence: Indices 47553 -- 48052
TCTGAGGCTGCTCTTCAGTTTGGCCCTCCTGACCACCCTCACCACCCTGAGCAGGGCCCGCAATG
GGCTCGCCTTGCTCGTTGACGTGAAGGATCTTAAAGTTGGGGCCTTGCTGCCCCGCAAAGGGGTC
GGGTTCAGGCACAAACTTCCAACCGTTCTTAGTGTAGAGCTCCTTGCGGGACTGTTCCCTCTGTT
TGTACCAGTCGGCCCAGGACTGGAATCTCTTCGCGCGGGGCACCTCAGCTCTCTTCTCCACCACG
GGACTACCCACATAGGCAACAGTGCTGCCCGGAAGACCAGGAATGTTTTCCTGGGCGGGCGCGGC
CACGGGAAGCGCATCAACAAGCCCACCGGCAATCACTGCGAGGGCTGCAAAATTGAACAAATACA
TAAGGAGTGGACAGGTTCAGAACTTAGGGGTAAGGAGTGACAAAAGTTGGAGTGAACAGAACGCT
GGAGTCGACAGCGACGCAACACCGCCATTTTAACTATTGCCATCG
Found at i:48887 original size:16 final size:16
Alignment explanation
Indices: 48845--48911 Score: 68
Period size: 16 Copynumber: 4.4 Consensus size: 16
48835 AGGCACCGAC
48845 AAACCTACAAAGCTAT
1 AAACCTACAAAGCTAT
48861 AAACC--CAAAGCTAT
1 AAACCTACAAAGCTAT
* *
48875 GAGCCTACAAAGCTA-
1 AAACCTACAAAGCTAT
* * *
48890 CAACCTTCAAAGCTAC
1 AAACCTACAAAGCTAT
48906 AAACCT
1 AAACCT
48912 GTCATGGTTC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
14 12 0.29
15 12 0.29
16 18 0.43
ACGTcount: A:0.45, C:0.30, G:0.09, T:0.16
Consensus pattern (16 bp):
AAACCTACAAAGCTAT
Left flanking sequence: Indices 48345 -- 48844
GGTTCGTGGACGCGTTGTTGCTACGTGAAGAGCGTTCGGTGGCTTTCTCGATCTCATTGTCGGTG
GAAAGAAGGTGCTACCGAGGGTCACCCGAGGAACACCTCCGTTTCCCGAGCTGTGTTCTCGGACC
AGCGTCATCGACCTCTGCATGGAACCCGGAATATGTCCGGATTCAGTTAATGGCATGGGGTTCAT
GCATCCCGGCTAAGCACGCGTGTTAGCATTCTGAGGTGAGGAACAGTGACCACGACATTCCAGAG
CCCCAGTGAAACACGGGCGAAACAGCTAAGAACCTAGTTTGCGACAGTAAAGGCACTAGCTAGAC
TGGCTAAGCCGATTAGGGTGCTAGTCTGTCACAGGCGAAAGTCGCGTATCTCGCCTACGTGGGCG
GAATGTGTCTCGGATAGAAAGCTTAATCTGTCAAGTGAAATTCTCTGTTACGTAGGTGTTTATTC
ACGTTCTCCAACGCTTATCGTTGCGAACACGCCAAAGGCACCGAC
Right flanking sequence: Indices 48912 -- 49411
GTCATGGTTCTCGGCTCGAGCCAAGAAATCTCGCTTTGTGTCACTGGCACCGCACGTGAGACTCT
AGGCCTTCTTTTCCTCCTTCTTTTCCTCCTTCTTTTCCTCCTTCTTCTCTTCCTTCTTCTCCTCC
TGTAACCGGTGGCGGTGTTCTTGCAAGTACGAGTACTGGTGCACGGTTTGCACCATCAACATGCG
GTGGTCGCGCATCCGCTGCACCAAGTCCTTCACGACGTCGCCCGACCCGTGCGAGCCGTACAAAA
GCTGGTCAATGGCGATGAAGGTGCCGGTGCGACCGACACCCGCAGAACAATGGACGATGGGCGTG
AGCTTACCGGTTTCTGTCAGCTGGCGGAGCGCCTGGAGCTCGTCTGCCAACTGCACAAGGTCGTC
GATGCTCGGAGGCACCTTGGCGTCCGACCACTGCGGGTAGTAGTAGTGCACCACCTCGAGCTCGC
GCCCGTCCGCCACCACCTTGAACGTGCTCACGGTGAACTGGCTGC
Found at i:48997 original size:12 final size:12
Alignment explanation
Indices: 48980--49042 Score: 99
Period size: 12 Copynumber: 5.2 Consensus size: 12
48970 AGACTCTAGG
48980 CCTTCTTTTCCT
1 CCTTCTTTTCCT
48992 CCTTCTTTTCCT
1 CCTTCTTTTCCT
49004 CCTTCTTTTCCT
1 CCTTCTTTTCCT
* *
49016 CCTTCTTCTCTT
1 CCTTCTTTTCCT
*
49028 CCTTCTTCTCCT
1 CCTTCTTTTCCT
49040 CCT
1 CCT
49043 GTAACCGGTG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 48 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (12 bp):
CCTTCTTTTCCT
Left flanking sequence: Indices 48480 -- 48979
CATCGACCTCTGCATGGAACCCGGAATATGTCCGGATTCAGTTAATGGCATGGGGTTCATGCATC
CCGGCTAAGCACGCGTGTTAGCATTCTGAGGTGAGGAACAGTGACCACGACATTCCAGAGCCCCA
GTGAAACACGGGCGAAACAGCTAAGAACCTAGTTTGCGACAGTAAAGGCACTAGCTAGACTGGCT
AAGCCGATTAGGGTGCTAGTCTGTCACAGGCGAAAGTCGCGTATCTCGCCTACGTGGGCGGAATG
TGTCTCGGATAGAAAGCTTAATCTGTCAAGTGAAATTCTCTGTTACGTAGGTGTTTATTCACGTT
CTCCAACGCTTATCGTTGCGAACACGCCAAAGGCACCGACAAACCTACAAAGCTATAAACCCAAA
GCTATGAGCCTACAAAGCTACAACCTTCAAAGCTACAAACCTGTCATGGTTCTCGGCTCGAGCCA
AGAAATCTCGCTTTGTGTCACTGGCACCGCACGTGAGACTCTAGG
Right flanking sequence: Indices 49043 -- 49542
GTAACCGGTGGCGGTGTTCTTGCAAGTACGAGTACTGGTGCACGGTTTGCACCATCAACATGCGG
TGGTCGCGCATCCGCTGCACCAAGTCCTTCACGACGTCGCCCGACCCGTGCGAGCCGTACAAAAG
CTGGTCAATGGCGATGAAGGTGCCGGTGCGACCGACACCCGCAGAACAATGGACGATGGGCGTGA
GCTTACCGGTTTCTGTCAGCTGGCGGAGCGCCTGGAGCTCGTCTGCCAACTGCACAAGGTCGTCG
ATGCTCGGAGGCACCTTGGCGTCCGACCACTGCGGGTAGTAGTAGTGCACCACCTCGAGCTCGCG
CCCGTCCGCCACCACCTTGAACGTGCTCACGGTGAACTGGCTGCGGTGGTGCTCGGTTTGGACGA
GCTCGACGGTAAACTGCGAGTATCCGTCGAACCCGCCCGAGAGATCCCAGATCTCGCCCTCGTCG
GGCCAGTACTTGTGGCACTTGGTGATCTGCTGCTCTACTAGCGGG
Found at i:51722 original size:19 final size:19
Alignment explanation
Indices: 51698--51744 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
51688 TGAGTGGAGA
51698 GTGATGGTGGAGGGCGGGT
1 GTGATGGTGGAGGGCGGGT
* *
51717 GTGATGGTGGTGGGTGGGT
1 GTGATGGTGGAGGGCGGGT
*
51736 GCGATGGTG
1 GTGATGGTG
51745 ATTGATGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.04, G:0.62, T:0.26
Consensus pattern (19 bp):
GTGATGGTGGAGGGCGGGT
Left flanking sequence: Indices 51198 -- 51697
CCATGTACTACCGCAAGGCCCAGGCGGCGCTCGTGGTGTACGACGTCACCAAGCCCGCCCTGCTC
ATCAAGGCGCGCCACTGGGTCAAGGAGCTCCACGAGCAGGCAAACAAGGACATAGTGATTGCGCT
TGTGGGCAACAAGGTCGATCTCGTGGACGACGACGCCGACCTGCGCAAGGTCACCGAGGAGGAGG
GCAAGAGCCTAGCCGACGAGGAGGGGTTGTTGTGGTTTGAGACCCTGGCCAAGACGGGCAAGAAC
GTGACGGAGGTGTTTGTAGCCATCGGGAAGAAGATCCCGGAGGAGGCGGCCGAGCAGGAGCGCCC
GCAGGAGGGCCGCATCGACCTTTCGGGGGCGGAGCCCGCCCGGGCGGGTGGCGAGTGTGCTTGTT
AGATAATGAATGAATGAAAGCCAGAGAGCCAGAGATGGGGGTGTAGAGTAGAAGTCCTCTTGTTA
AAATAGTGGTCTTAGGGGTGAATATGGTGGTTAGATGAGTGGAGA
Right flanking sequence: Indices 51745 -- 52244
ATTGATGGGTATTGACGGTTTTGAGGTCACCAGACGTGTTACGAGGGTACAGTTTTGTCGAAGAC
GGGTCCGAGAAGGATCCGAAGTATTACGAGAGGCGCCTTTGAGTGTGGTCAGCCACAGCGATTAG
ACGAGACTTTCGCCAATAGGGGTAGCAGTGCGAAATTGGCGTGACGACCGTAACGAGGTGATCAC
ATCGTAGAATTCTCCTCAATTGACCACAATTGACCAAGTTCCATCTGGGATCCACCCTACGTTGG
CCAATTCATCATTCCATTCTCTGTTTCAATTAGTTTAGAAGACCTAAGATCACTACGATCACCAC
GATATCCACTCTATCAGCCTGACTACACCCAGTTCATTTAATGCAATTAATACATCCAATGCACT
CAATGCACTCAATGCACTCAATACACCCATACACTAATGTATCCACTCCACCACTAACCACCCCA
TTCACCCACATTCCATGCACCACCCCTTTTTTCACCTTCATTCCG
Found at i:52138 original size:9 final size:9
Alignment explanation
Indices: 52126--52156 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
52116 TTAATACATC
52126 CAATGCACT
1 CAATGCACT
52135 CAATGCACT
1 CAATGCACT
52144 CAATGCACT
1 CAATGCACT
52153 CAAT
1 CAAT
52157 ACACCCATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.35, C:0.32, G:0.10, T:0.23
Consensus pattern (9 bp):
CAATGCACT
Left flanking sequence: Indices 51626 -- 52125
GGGTGTAGAGTAGAAGTCCTCTTGTTAAAATAGTGGTCTTAGGGGTGAATATGGTGGTTAGATGA
GTGGAGAGTGATGGTGGAGGGCGGGTGTGATGGTGGTGGGTGGGTGCGATGGTGATTGATGGGTA
TTGACGGTTTTGAGGTCACCAGACGTGTTACGAGGGTACAGTTTTGTCGAAGACGGGTCCGAGAA
GGATCCGAAGTATTACGAGAGGCGCCTTTGAGTGTGGTCAGCCACAGCGATTAGACGAGACTTTC
GCCAATAGGGGTAGCAGTGCGAAATTGGCGTGACGACCGTAACGAGGTGATCACATCGTAGAATT
CTCCTCAATTGACCACAATTGACCAAGTTCCATCTGGGATCCACCCTACGTTGGCCAATTCATCA
TTCCATTCTCTGTTTCAATTAGTTTAGAAGACCTAAGATCACTACGATCACCACGATATCCACTC
TATCAGCCTGACTACACCCAGTTCATTTAATGCAATTAATACATC
Right flanking sequence: Indices 52157 -- 52656
ACACCCATACACTAATGTATCCACTCCACCACTAACCACCCCATTCACCCACATTCCATGCACCA
CCCCTTTTTTCACCTTCATTCCGTTCCCCACACAACCACACACCAATCCATTTTTCACTCGCACA
CACCATGTTGAGAGTCGCCTACATCCCCGAGCACTTTGCTCTGCCACTCTTCCTTGCTCTCAAGC
ACCAGTTCTTCAAGACCGAGGTCAAGTTTGTCCCCGTGATCGAGGGCACTGGGCGGTTGGTCAAG
TTGCTCAACGACGACGAGGTCGACATTGCCATTGGGTTGACCGAGGGGTTCATTTCGGACATTGC
CAAGGGCAACACTGCCAACAAGGTCATTGGCACCTACGTCAAGCTGCCCCTTTGCTGGGCCATCT
CGGCCGGGGCCCAGCTGGGCCTCCAGGACAAGAGCGAGCTCGACGGGTCCACCGTCGGGGTGTCG
CGGATCGGGCTGGGCTCGTACGTGATGAGCTTTGTGTTGGCCCAC
Found at i:53391 original size:14 final size:14
Alignment explanation
Indices: 53372--53414 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
53362 GCGATAGGTC
53372 TGAGTGATCAGTTT
1 TGAGTGATCAGTTT
*
53386 TGAGTGATTAGTTT
1 TGAGTGATCAGTTT
* *
53400 CGAGTGATCAATTT
1 TGAGTGATCAGTTT
53414 T
1 T
53415 CATAGTCATC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.23, C:0.07, G:0.26, T:0.44
Consensus pattern (14 bp):
TGAGTGATCAGTTT
Left flanking sequence: Indices 52872 -- 53371
GCAGGAGGCCGTGGATGCGTTCGTGGCCGGGGTGAAGCAGGGGATCGCCTACTTCGACGCCCACC
ACGACGAGGCGGTGGCGTGGATTGCCGAGAACTTGGACTACTCGAAGGAGGACGCCCAGGAGTGG
TTGAAGACGGTGGAGTTCAACCCGAGCTTGGACGTGGACTGGAAGACGGTGGTGGAGAACACCCG
CGACACGTTGAAGTTGGCGGGGGCGCTTACCGACGACGACAAGGTGGTCAATGAGCGCTTGGAGT
CGCTGGTGCAGCACTGAGCGATAGCACTGAGGCGATACGTATAATGAATAGCCATTTATGGATGT
AAGTGAATCTAAATACAGAATAGAGCCAATCCTATCTAATCATACACAATAGAGCCTATCCTGTT
AGCCAATCTTGTTGGTTACCAACCTCAGACTTACATTCAGGATGGTCACTTCCAGACTCTCTCAA
GGGTTGAGAGTAGTTTTGAGAGTGGTCATTTTTGAGCGATAGGTC
Right flanking sequence: Indices 53415 -- 53914
CATAGTCATCATAGATCACTTGTTGCATATCCTCTCATCACTACTGTTCGGCCAACACTATAACT
ATGCTTGATGCTACCTCCACGTACTTTTTGATCACTCAGAGTCACTTCGCCCGTTCCCCAGCCTC
TCTCTCTTCTTCGCCACCCAGAACTCACACTTAAATGCAAACTGGCCCAACGACTGGGGATCGCC
CGAGTACGACGTCCCGATCTCGTGCTCCTGCTCCTCAAACTCGAACCCCACCGCTTCACACAAGT
CAAAGAGCTCCGACCGCGCCAACTCCAAGCCTCCGTAGGGCTCGGGCTTGTCAAACACATTAACC
TTAGCGTTCTTGTCGTCCTCAAAGTGCCAGAGCAACGGGCCGAAGTTGATCCAGCGACCGTCGGG
CTTGAGCGTGTGGTATATCGTATCTAGGTAGTCGATGATGTTGCTGGCGGTGTCCAAAAAGAAGC
ACGTAGCCACGACGTCAAACTTCTCCTTGTTGTCCTGGCGGAACT
Found at i:54828 original size:19 final size:19
Alignment explanation
Indices: 54800--54884 Score: 55
Period size: 19 Copynumber: 4.5 Consensus size: 19
54790 CTAGGGCAGT
* *
54800 TGAAATGGATCAACGGAAG
1 TGAAAAGGATCAACGCAAG
* *
54819 TGAAAAGGATTAACGCAAT
1 TGAAAAGGATCAACGCAAG
* * * *
54838 TGGAAAGGATTAAGGCAAT
1 TGAAAAGGATCAACGCAAG
* * *
54857 TGAGAAGGA-CTAAGGCAAT
1 TGAAAAGGATC-AACGCAAG
54876 TGAAAAGGA
1 TGAAAAGGA
54885 CGTGGACAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
19 55 1.00
ACGTcount: A:0.45, C:0.08, G:0.29, T:0.18
Consensus pattern (19 bp):
TGAAAAGGATCAACGCAAG
Left flanking sequence: Indices 54300 -- 54799
TTCAAGTGCTGCCAAAATCGGGCCAAACGCCTGGTCTCGCTCAGCCCGCCCCTCAGCCAGCCACT
CCCGGGCCAACTGGAGAAGAGTGGACCTCGTCTTGTCGTACTCTGCTCTCAGAGCCACCACCCAC
CCGGCCAGCGGGTCCGAGGGGTGCATGGGCACACCCCACTGCTGGGCCCCGGCCACTGCTACAAT
GCGGCAGAAATGCTCGTTTCCGGTCACACACTCGTCCAAGTGGTCCAAATGGGGCTCAAACCACG
GGAGCAACTGGCGTTGGCGGCCCGAGATCGCGTGCCACTTCAAGAGCTTGGGTTTGAGCACCTGG
TCGCGCTGCCACTCGCCAAAGTCGTAGAACAGCAGGAGCACCTTGGACGCGGCCGCCAACTCGTT
GTCTGGCCACTCCGTCTCTGATTCCGGGTCGCTGAACCACTGGCTGTAGTCCATGATAGTTGATC
GTCTCGCAGGGATCAAAACCAAGGTATTACAAAGACTAGGGCAGT
Right flanking sequence: Indices 54885 -- 55384
CGTGGACAAAAGAAATGGAGGTGGAAGAGATTGAACCGGGGGTGTTTCGTTCGGGGATAGGTGTT
ATGTGCCTGATCCAACCTCGTATGTCTTTTTTCACAGTCTCACCACCGTATTGGTGCTCATCGCA
CGAGTCAAAACCGTCGCGACTACGCCGGATCCGGAACCCACAGTTACGGCTATTGTGGTGGCACC
GTTGATAGGCACAATCAGGTTTGTCGACACTTTTTGTAAACAGACCCTGGTATCAGTTTGTGACT
AGAAATAAAACTCAATTAAACACTCCATCTCCCTAAATACTCCACCTCCCCACACACTCTTCCCC
AGTGTCTCCACCTCCCATCTTCCCCGATGACGGCGATGAGCCTGTTCCCGTTTGGCTAAACTGGG
TGCGTCATGCAGGTACCTGCGGTCAACGTGGGAGAAGGATCCCGGTATCCCGAGCATCTGGCGGC
ACAGAAGCACACAATGTCGCGGGCTGGTGTAGCGGGCGGCAGTTT
Found at i:54885 original size:19 final size:19
Alignment explanation
Indices: 54819--54885 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
54809 TCAACGGAAG
* *
54819 TGAAAAGGATTAACGCAAT
1 TGAAAAGGACTAAGGCAAT
* *
54838 TGGAAAGGATTAAGGCAAT
1 TGAAAAGGACTAAGGCAAT
*
54857 TGAGAAGGACTAAGGCAAT
1 TGAAAAGGACTAAGGCAAT
54876 TGAAAAGGAC
1 TGAAAAGGAC
54886 GTGGACAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.45, C:0.09, G:0.28, T:0.18
Consensus pattern (19 bp):
TGAAAAGGACTAAGGCAAT
Left flanking sequence: Indices 54319 -- 54818
GGGCCAAACGCCTGGTCTCGCTCAGCCCGCCCCTCAGCCAGCCACTCCCGGGCCAACTGGAGAAG
AGTGGACCTCGTCTTGTCGTACTCTGCTCTCAGAGCCACCACCCACCCGGCCAGCGGGTCCGAGG
GGTGCATGGGCACACCCCACTGCTGGGCCCCGGCCACTGCTACAATGCGGCAGAAATGCTCGTTT
CCGGTCACACACTCGTCCAAGTGGTCCAAATGGGGCTCAAACCACGGGAGCAACTGGCGTTGGCG
GCCCGAGATCGCGTGCCACTTCAAGAGCTTGGGTTTGAGCACCTGGTCGCGCTGCCACTCGCCAA
AGTCGTAGAACAGCAGGAGCACCTTGGACGCGGCCGCCAACTCGTTGTCTGGCCACTCCGTCTCT
GATTCCGGGTCGCTGAACCACTGGCTGTAGTCCATGATAGTTGATCGTCTCGCAGGGATCAAAAC
CAAGGTATTACAAAGACTAGGGCAGTTGAAATGGATCAACGGAAG
Right flanking sequence: Indices 54886 -- 55385
GTGGACAAAAGAAATGGAGGTGGAAGAGATTGAACCGGGGGTGTTTCGTTCGGGGATAGGTGTTA
TGTGCCTGATCCAACCTCGTATGTCTTTTTTCACAGTCTCACCACCGTATTGGTGCTCATCGCAC
GAGTCAAAACCGTCGCGACTACGCCGGATCCGGAACCCACAGTTACGGCTATTGTGGTGGCACCG
TTGATAGGCACAATCAGGTTTGTCGACACTTTTTGTAAACAGACCCTGGTATCAGTTTGTGACTA
GAAATAAAACTCAATTAAACACTCCATCTCCCTAAATACTCCACCTCCCCACACACTCTTCCCCA
GTGTCTCCACCTCCCATCTTCCCCGATGACGGCGATGAGCCTGTTCCCGTTTGGCTAAACTGGGT
GCGTCATGCAGGTACCTGCGGTCAACGTGGGAGAAGGATCCCGGTATCCCGAGCATCTGGCGGCA
CAGAAGCACACAATGTCGCGGGCTGGTGTAGCGGGCGGCAGTTTA
Found at i:55186 original size:17 final size:17
Alignment explanation
Indices: 55161--55194 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
55151 AAAACTCAAT
*
55161 TAAACACTCCATCTCCC
1 TAAACACTCCACCTCCC
*
55178 TAAATACTCCACCTCCC
1 TAAACACTCCACCTCCC
55195 CACACACTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.47, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAACACTCCACCTCCC
Left flanking sequence: Indices 54661 -- 55160
AGCACCTTGGACGCGGCCGCCAACTCGTTGTCTGGCCACTCCGTCTCTGATTCCGGGTCGCTGAA
CCACTGGCTGTAGTCCATGATAGTTGATCGTCTCGCAGGGATCAAAACCAAGGTATTACAAAGAC
TAGGGCAGTTGAAATGGATCAACGGAAGTGAAAAGGATTAACGCAATTGGAAAGGATTAAGGCAA
TTGAGAAGGACTAAGGCAATTGAAAAGGACGTGGACAAAAGAAATGGAGGTGGAAGAGATTGAAC
CGGGGGTGTTTCGTTCGGGGATAGGTGTTATGTGCCTGATCCAACCTCGTATGTCTTTTTTCACA
GTCTCACCACCGTATTGGTGCTCATCGCACGAGTCAAAACCGTCGCGACTACGCCGGATCCGGAA
CCCACAGTTACGGCTATTGTGGTGGCACCGTTGATAGGCACAATCAGGTTTGTCGACACTTTTTG
TAAACAGACCCTGGTATCAGTTTGTGACTAGAAATAAAACTCAAT
Right flanking sequence: Indices 55195 -- 55694
CACACACTCTTCCCCAGTGTCTCCACCTCCCATCTTCCCCGATGACGGCGATGAGCCTGTTCCCG
TTTGGCTAAACTGGGTGCGTCATGCAGGTACCTGCGGTCAACGTGGGAGAAGGATCCCGGTATCC
CGAGCATCTGGCGGCACAGAAGCACACAATGTCGCGGGCTGGTGTAGCGGGCGGCAGTTTACCCC
CCGGTGCGTCGTGTTTACCTCTGACGTCTTCGGCAATTGCCCTAGCCTCGAGCAACCCAGGTGAA
ATTGACAGGTTGCCGCCACAAAACGTGGACAGAGACATTGCCGTCTAGTAGACGAGGCTGCGGGC
GGAGTTGCTCGGTGCGATTCTCGAGTGTTTCTCTGGGGCTACCCTGCGGTGGTTTGGTCCCGGTA
ACACCCGGTGTGCCAATTCCCCACCACCCTCCTCCCGCCTCCCGCGGCCTCCCACACCCTCCCGG
AGCCTCTTGCTCCTCCTCCTGTCCTCTTCGCTCTATTTACCTTTT
Found at i:57509 original size:12 final size:12
Alignment explanation
Indices: 57492--57529 Score: 58
Period size: 12 Copynumber: 3.0 Consensus size: 12
57482 CGGAGGTGAA
57492 TTCCTTGAGGTG
1 TTCCTTGAGGTG
57504 TTCCTTGAGGTGGG
1 TTCCTTGAGGT--G
57518 TTCCTTGAGGTG
1 TTCCTTGAGGTG
57530 AGTTCTTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.08, C:0.16, G:0.37, T:0.39
Consensus pattern (12 bp):
TTCCTTGAGGTG
Left flanking sequence: Indices 56992 -- 57491
CCGACGAGCTGAAAACCTACACGTGCACCTACCAGGAGTGCGGTAAGAAGTTTACTCGGCGTTAC
AACGTGCGGTCACACATCCAGACCCACTTGTGCGACCGCCCGTTCGCGTGTTCGTACTGCCCGAA
GAAGTTTGTGCGCCAGCACGACTTGAACCGGCACGTCAAGGGCCACTTGGAGGCCCGGCACTGCA
AGTGTCCTTGCGGCAAAGAGTTTGCTCGGTTGGATGCGTTGAAAAAGCACCGCGAGCGTAATATA
TGTCCTGGTGGCTACCAGGGCCAGGGACCCCATAGCATTTCGAAACCGCCGTCCCAGTCGCGGAC
TAAAAAGGTTTTGGACGAGTTGACCTCGGAAAAAGTCATGGGCGATCTCTTGGGACAATAATTGT
TTAATAAGAAGGATTGAATAGCGTAAGCGTCGTAAAAGCACGTCAAATGTGTCAAAGTTGCAGCC
GCTCGTTTGGTAGCGTCAAGTAACACTGCTGGCTACGGAGGTGAA
Right flanking sequence: Indices 57530 -- 58029
AGTTCTTTCGTCATTTGTTTATTTAGTTTCATGAACACAATTGGTTATAAATCCTGTAGGTAGTA
GCACTACACCTGGAGGCCGCAAGCACTACGCCTGGAGGGCGACGTTACACCCGTCCATCAAAGAC
ATCGTCAAGTGAGTGGCCAACCGGGTGCGGTCGTCGTTGAAGTCCTCGATCTTGTCAAAGAGCTG
CAAGAGCCTCACAATCACGTACGACATCTCGGTCAACGCAAACTGCTGGCCGAGACAGATACGGG
GCCCCCCATTAAAAGGTAAGTAGGCCCAGCCAAGACGCAGAGACTCGGGCTCCAACCACCGCTCG
GGCCGCCACTCGTGGGCGTCCTTCCCGTAGAGAGCCTCGCTGCGGTGCATGGCAAACACGTTGTA
GAACACCGTCTGGCCCTTGGGGACAAACACCGGCTGGTCGCCGTTGGGACCGCCTCCACGGGGGA
TAGTGGTATCCTTGGTGGCATCGCGACTGTTTCCGGGCACGATGG
Found at i:57534 original size:14 final size:14
Alignment explanation
Indices: 57484--57534 Score: 70
Period size: 14 Copynumber: 3.8 Consensus size: 14
57474 GCTGGCTACG
*
57484 GAGGTGAATTCCTT
1 GAGGTGAGTTCCTT
57498 GAGGT--GTTCCTT
1 GAGGTGAGTTCCTT
*
57510 GAGGTGGGTTCCTT
1 GAGGTGAGTTCCTT
57524 GAGGTGAGTTC
1 GAGGTGAGTTC
57535 TTTCGTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 11 0.33
14 22 0.67
ACGTcount: A:0.14, C:0.14, G:0.37, T:0.35
Consensus pattern (14 bp):
GAGGTGAGTTCCTT
Left flanking sequence: Indices 56984 -- 57483
GACGGGCCCCGACGAGCTGAAAACCTACACGTGCACCTACCAGGAGTGCGGTAAGAAGTTTACTC
GGCGTTACAACGTGCGGTCACACATCCAGACCCACTTGTGCGACCGCCCGTTCGCGTGTTCGTAC
TGCCCGAAGAAGTTTGTGCGCCAGCACGACTTGAACCGGCACGTCAAGGGCCACTTGGAGGCCCG
GCACTGCAAGTGTCCTTGCGGCAAAGAGTTTGCTCGGTTGGATGCGTTGAAAAAGCACCGCGAGC
GTAATATATGTCCTGGTGGCTACCAGGGCCAGGGACCCCATAGCATTTCGAAACCGCCGTCCCAG
TCGCGGACTAAAAAGGTTTTGGACGAGTTGACCTCGGAAAAAGTCATGGGCGATCTCTTGGGACA
ATAATTGTTTAATAAGAAGGATTGAATAGCGTAAGCGTCGTAAAAGCACGTCAAATGTGTCAAAG
TTGCAGCCGCTCGTTTGGTAGCGTCAAGTAACACTGCTGGCTACG
Right flanking sequence: Indices 57535 -- 58034
TTTCGTCATTTGTTTATTTAGTTTCATGAACACAATTGGTTATAAATCCTGTAGGTAGTAGCACT
ACACCTGGAGGCCGCAAGCACTACGCCTGGAGGGCGACGTTACACCCGTCCATCAAAGACATCGT
CAAGTGAGTGGCCAACCGGGTGCGGTCGTCGTTGAAGTCCTCGATCTTGTCAAAGAGCTGCAAGA
GCCTCACAATCACGTACGACATCTCGGTCAACGCAAACTGCTGGCCGAGACAGATACGGGGCCCC
CCATTAAAAGGTAAGTAGGCCCAGCCAAGACGCAGAGACTCGGGCTCCAACCACCGCTCGGGCCG
CCACTCGTGGGCGTCCTTCCCGTAGAGAGCCTCGCTGCGGTGCATGGCAAACACGTTGTAGAACA
CCGTCTGGCCCTTGGGGACAAACACCGGCTGGTCGCCGTTGGGACCGCCTCCACGGGGGATAGTG
GTATCCTTGGTGGCATCGCGACTGTTTCCGGGCACGATGGGGTAC
Found at i:59946 original size:17 final size:18
Alignment explanation
Indices: 59896--59947 Score: 72
Period size: 17 Copynumber: 3.0 Consensus size: 18
59886 GGGATATGTG
59896 TAGTCACAAATTGGTTAC
1 TAGTCACAAATTGGTTAC
* *
59914 TAGTAAC-ATTTGGTTAC
1 TAGTCACAAATTGGTTAC
59931 TAGTCACAAATT-GTTAC
1 TAGTCACAAATTGGTTAC
59948 GAGGTGTCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 20 0.69
18 9 0.31
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (18 bp):
TAGTCACAAATTGGTTAC
Left flanking sequence: Indices 59396 -- 59895
AGCCTTGTAGGGCAGCCACCAGCAGGAAAACGGGGGATTTGTCAGCTGCGGCCACAATGGCAAGG
ATCAACCGCGATCGCGGGGGCGCCGTTGTCGGCTCGGGTCCCACTGGGATCCGGTCACATGAAAC
GAGGGGAGCGAAGTGGGGCACCGGTGGGGTAAGCGGTGATAAGTAATGCTTAGCGAAGAGATCTT
AGGTGATTAGCAAGTGGGCGGTGGTATGCTCTTGAGTTTGCAAGAAATATTCGTAAGGATCCTTG
TGAGTTTTGTGGTTTGTGGCAGTAGAGGGAGTTTAGTCGGGGTACGTGCTCAGGACGAATTCCCG
TGTAATGTTGTCAGTACGCTCGGTGCTTATGTGGAGTGTAATTAGCCAACCTGTTGAAATGTATC
TCTGCTTTTGTACGCTCAGACCAGTTGTAACGTAACCATGGCTTAAAGTGAAGACACCATTGGTA
TTTCAGGCCCACGACCACTATGGTCGTAACAACCGGGGATATGTG
Right flanking sequence: Indices 59948 -- 60447
GAGGTGTCTTAGCAGGATGCGACTTCCCGTAGTTCGCAAAGCAGAGACTGTGTTCCATCGAACGC
GGTTGTGACACAAAGATTGCTGCTACTGGAGCCAAATTAGTCACATACGTGTTTACCAGGTTTGA
CGGATTTGCGTATCAAGTGGTGGTCGGTCTGTGATCGGTCCTTACGCTTATCAGATCATCAAACG
GCTAGAGAGATTGACGATAGTAGCGATCCGAGAAACCGTAGCCGACCTTCACGATAAGGCATGGT
GTGCCACGGGTCTATCACCAAGGTTTAGTAGCAACCGACCGTTGTACATCAATTTGCAACGAGGG
TATACACACTCGTTGGTTAAGTATATTTTCTACCAAAGAAACGTCACAGGGGTATTGACTATATA
AACTTCGTATGACGGTATAGTAATACGCCTTATTTATATTATTAACCTAACCGAATTGATTCAGT
ATTGACTAACTGGTATACCCATAGTTCGAACACTCATACTCTTAC
Found at i:60625 original size:14 final size:14
Alignment explanation
Indices: 60603--60634 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
60593 AGCAGGAGAC
*
60603 TAACTCCTGGCTGG
1 TAACCCCTGGCTGG
60617 TAACCCCTGGCTGG
1 TAACCCCTGGCTGG
60631 TAAC
1 TAAC
60635 TTTTCAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.31, G:0.25, T:0.25
Consensus pattern (14 bp):
TAACCCCTGGCTGG
Left flanking sequence: Indices 60103 -- 60602
GGTCTGTGATCGGTCCTTACGCTTATCAGATCATCAAACGGCTAGAGAGATTGACGATAGTAGCG
ATCCGAGAAACCGTAGCCGACCTTCACGATAAGGCATGGTGTGCCACGGGTCTATCACCAAGGTT
TAGTAGCAACCGACCGTTGTACATCAATTTGCAACGAGGGTATACACACTCGTTGGTTAAGTATA
TTTTCTACCAAAGAAACGTCACAGGGGTATTGACTATATAAACTTCGTATGACGGTATAGTAATA
CGCCTTATTTATATTATTAACCTAACCGAATTGATTCAGTATTGACTAACTGGTATACCCATAGT
TCGAACACTCATACTCTTACCCGTGGTATTAGCATATAAGGCAGTGGCTGCTAGAGCTTTGTTCG
TTGATTCAGCGAACGACCTATATTGAGACTATCCATTGGTAAGTGAGCACAAAGGACCACTTCTA
TGACTGAACCTTCGCCTAAGCTAGCCCACCTGCCGAGCAGGAGAC
Right flanking sequence: Indices 60635 -- 61134
TTTTCAACAGTTCAAGTGAAACAAAAACGGACTAGGACTGTTAAATGTACTACCATATGGAAAAC
CAGACTTTTCCTTAATATACTCAGCCCGATAAAATGGTACACCACGCGGCTGACCACCGGCAACT
TTAAATCCGCCGGGTGGTATTGCGTCCCGGTCGATCGCTTCACCCAGTCGTATCGGTAAAGCCCA
ACAATAGCGCAGGCTACAATCAATTACACGAGCTACCGAGAACACCGACAATAGCATCCCACCCA
GCTCCAACCCGACCCACCACAGACCACCACACCCCACCACTCCCTAAAACCACCCCTCACCACCC
CCCCACCACACCCCCACCACACTCCACCCCTACACCCTCCCCCATCGCCTGTTGCGCCCCCACCA
CCGCTTCCGGCTGTGCTCTATTTCCCAATCGGGCCGTGCATGAGGCACCGTTGACACACGCAGTC
TCCCGACACGCAGCGCCATGGCTCCGATCCCGACACGAGTGTCCC
Found at i:60980 original size:11 final size:11
Alignment explanation
Indices: 60945--60981 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
60935 TCCCTAAAAC
60945 CACCCCTCACCA
1 CACCCC-CACCA
*
60957 CCCCCCCACCA
1 CACCCCCACCA
60968 CACCCCCACCA
1 CACCCCCACCA
60979 CAC
1 CAC
60982 TCCACCCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.24, C:0.73, G:0.00, T:0.03
Consensus pattern (11 bp):
CACCCCCACCA
Left flanking sequence: Indices 60445 -- 60944
TACCCGTGGTATTAGCATATAAGGCAGTGGCTGCTAGAGCTTTGTTCGTTGATTCAGCGAACGAC
CTATATTGAGACTATCCATTGGTAAGTGAGCACAAAGGACCACTTCTATGACTGAACCTTCGCCT
AAGCTAGCCCACCTGCCGAGCAGGAGACTAACTCCTGGCTGGTAACCCCTGGCTGGTAACTTTTC
AACAGTTCAAGTGAAACAAAAACGGACTAGGACTGTTAAATGTACTACCATATGGAAAACCAGAC
TTTTCCTTAATATACTCAGCCCGATAAAATGGTACACCACGCGGCTGACCACCGGCAACTTTAAA
TCCGCCGGGTGGTATTGCGTCCCGGTCGATCGCTTCACCCAGTCGTATCGGTAAAGCCCAACAAT
AGCGCAGGCTACAATCAATTACACGAGCTACCGAGAACACCGACAATAGCATCCCACCCAGCTCC
AACCCGACCCACCACAGACCACCACACCCCACCACTCCCTAAAAC
Right flanking sequence: Indices 60982 -- 61481
TCCACCCCTACACCCTCCCCCATCGCCTGTTGCGCCCCCACCACCGCTTCCGGCTGTGCTCTATT
TCCCAATCGGGCCGTGCATGAGGCACCGTTGACACACGCAGTCTCCCGACACGCAGCGCCATGGC
TCCGATCCCGACACGAGTGTCCCAACGCCCACCCCCGGTCCCCACCACCCCTCCACACTCCCTCT
CCCCCGCCTCCGCCCCGCCTCCGGGCTGCCTCCCCAACCATCTCGCTTAGCTCGTGACCATGCAC
GATCCGCGCCCGGGCTCGTGATTGTTTACCCGAAAATTTCAGGCCACGCACACACACCCAGGCAC
ACGATGGAGTTGATTGGACAGAAGGTCAACGTCCCGGGCACACGCGGCCACGGGATCCTCAAGTA
CTACGGGCCCATCGCCGACAAACAGGGGTTGTTTGGCGGGCTCGAGTTGGTGGGCCCCATCGCCG
CCCTCCGGGGCAAGAACCTGGGCATGGTCGACGGCAACCGGTATT
Found at i:61796 original size:12 final size:12
Alignment explanation
Indices: 61765--61796 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
61755 CCTCTGCACT
*
61765 CTCCTCCACCCC
1 CTCCTCCGCCCC
61777 CTCCTCCGCCCC
1 CTCCTCCGCCCC
61789 CTCCTCCG
1 CTCCTCCG
61797 GGCTGCGCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.72, G:0.06, T:0.19
Consensus pattern (12 bp):
CTCCTCCGCCCC
Left flanking sequence: Indices 61265 -- 61764
GTTTACCCGAAAATTTCAGGCCACGCACACACACCCAGGCACACGATGGAGTTGATTGGACAGAA
GGTCAACGTCCCGGGCACACGCGGCCACGGGATCCTCAAGTACTACGGGCCCATCGCCGACAAAC
AGGGGTTGTTTGGCGGGCTCGAGTTGGTGGGCCCCATCGCCGCCCTCCGGGGCAAGAACCTGGGC
ATGGTCGACGGCAACCGGTATTTCGAGGTGGACCAGCCGATGACGGGGTTGTTTCTCCCGTGGGA
CCGCCTCCGCTCGCTGAACCCGCTGTTGCCTGCGCTCAACCCCAACGGCAGCATCGCCGAGTCCC
AGATCCTGTTGCCGAAGAGGGGCTCCCCGGGGGGGGCCACCCCGAGCCTGGGCATCCCGGCGCCG
AAACCCACGCGGTCGCGGTTGTCGAGCGGGAGCAGTCTAGGACTAAAGGGAGCCGGTGCCAGCAC
CACCGGTGCTGGTGCCAAACCAGGGGCTGCACCCGCCTCTGCACT
Right flanking sequence: Indices 61797 -- 62296
GGCTGCGCCCGCGGTCGCGCCAGCTCAGCGACTCGCGCCCCCCGCTGCGCCGGCTGCCGGCGCTC
CGCCCGCCGTCGGAGGCCCGCGCCAGCCCCACCATCGCCGAGCACGAGCTCTACGCCGCCGAGAT
CGCCGAGCTCAAGGGCAAGTGCGCCGCCACCGAGCGCCAGTTGGCAGACAAGGAGGCGATTTTGG
GCGAGCTCCGCGCCACCGTGGACGAGTTGCACCCGTTGTTGGAGCAGTACGAGGCCCAGGTGGCG
GAGGCCAACGCCCGCGCCGACCGCACCAAGGCGGAGTTTGAGCGGGCACGTGAGGAGTGGCGGCT
GAGCGTCGAGGCGATGACGGCGTCCCACCAGGAGAACGAGGAGTTTTACGTGCGGGAGATCGAGG
CGTTGAAGCGGGGCGGGGAGGGGGATGGGCTGGGTGACGGGCAGGGGGATGGGGGTGAGAATGGG
GGCGAGATGGAGGAGCGCGTGCGGGAGATGGAGGAGCGCGTGAGG
Found at i:62280 original size:21 final size:21
Alignment explanation
Indices: 62255--62329 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
62245 GAATGGGGGC
*
62255 GAGATGGAGGAGCGCGTGCGG
1 GAGATGGAGGAGCGCGTGAGG
62276 GAGATGGAGGAGCGCGTGAGG
1 GAGATGGAGGAGCGCGTGAGG
** *
62297 GAGGA-GGAGGCCCGGGTGAGG
1 GA-GATGGAGGAGCGCGTGAGG
*
62318 GAGGTGGAGGAG
1 GAGATGGAGGAG
62330 AGGGCCCGCG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
20 1 0.02
21 42 0.93
22 2 0.04
ACGTcount: A:0.21, C:0.11, G:0.60, T:0.08
Consensus pattern (21 bp):
GAGATGGAGGAGCGCGTGAGG
Left flanking sequence: Indices 61755 -- 62254
CCTCTGCACTCTCCTCCACCCCCTCCTCCGCCCCCTCCTCCGGGCTGCGCCCGCGGTCGCGCCAG
CTCAGCGACTCGCGCCCCCCGCTGCGCCGGCTGCCGGCGCTCCGCCCGCCGTCGGAGGCCCGCGC
CAGCCCCACCATCGCCGAGCACGAGCTCTACGCCGCCGAGATCGCCGAGCTCAAGGGCAAGTGCG
CCGCCACCGAGCGCCAGTTGGCAGACAAGGAGGCGATTTTGGGCGAGCTCCGCGCCACCGTGGAC
GAGTTGCACCCGTTGTTGGAGCAGTACGAGGCCCAGGTGGCGGAGGCCAACGCCCGCGCCGACCG
CACCAAGGCGGAGTTTGAGCGGGCACGTGAGGAGTGGCGGCTGAGCGTCGAGGCGATGACGGCGT
CCCACCAGGAGAACGAGGAGTTTTACGTGCGGGAGATCGAGGCGTTGAAGCGGGGCGGGGAGGGG
GATGGGCTGGGTGACGGGCAGGGGGATGGGGGTGAGAATGGGGGC
Right flanking sequence: Indices 62330 -- 62829
AGGGCCCGCGCCGCGGAGGAACGGGCGCGGGAGGAGGAGGCGAGGGCCACGGCCGCGGAGGAGCG
TCTCCGCGAGGAGGAGGCCCGCGCCGCCGAGTACCAGCACACCGCCGAGGCCCACCAGCGCACCA
TAGACACCCACCAGCGCACCATCCACGACCACCAGCGCACCATCGCCACCCACAAAGAAACCCTA
GACGCCCGCGCCGCCGACCTGGAGCTTGCGGCCCGGGTGGCGGAGCTCGAGCGCCAGGTGGAGGA
GGCCCGGCGTGAGACGGAGGAGGCCCGGGAGGAGGCCCGGCGCCAGACGGAAGCGGCCCAGAACT
TGGCCCAGAACCTGGCCCAGGACAACACCCACAACGAGTCGGAGCCGGGCACCGGGCTCAATGGG
CGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAAAGAACCGGCTGCTCAAACAGCTCCTCGCCGA
GGGCGGGTCCGACCCGGACAAGCTCGACGACTTGGAGGGCAAGAT
Found at i:62347 original size:21 final size:20
Alignment explanation
Indices: 62323--62392 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 20
62313 TGAGGGAGGT
62323 GGAGGAGAGGGCCCGCGCCGC
1 GGAGGAGAGGGCCCG-GCCGC
* ** *
62344 GGAGGA-ACGGGCGCGGGAGGA
1 GGAGGAGA-GGGC-CCGGCCGC
*
62365 GGAGGCGAGGGCCACGGCCGC
1 GGAGGAGAGGGCC-CGGCCGC
62386 GGAGGAG
1 GGAGGAG
62393 CGTCTCCGCG
Statistics
Matches: 35, Mismatches: 10, Indels: 8
0.66 0.19 0.15
Matches are distributed among these distances:
20 2 0.06
21 30 0.86
22 3 0.09
ACGTcount: A:0.19, C:0.24, G:0.57, T:0.00
Consensus pattern (20 bp):
GGAGGAGAGGGCCCGGCCGC
Left flanking sequence: Indices 61823 -- 62322
AGCGACTCGCGCCCCCCGCTGCGCCGGCTGCCGGCGCTCCGCCCGCCGTCGGAGGCCCGCGCCAG
CCCCACCATCGCCGAGCACGAGCTCTACGCCGCCGAGATCGCCGAGCTCAAGGGCAAGTGCGCCG
CCACCGAGCGCCAGTTGGCAGACAAGGAGGCGATTTTGGGCGAGCTCCGCGCCACCGTGGACGAG
TTGCACCCGTTGTTGGAGCAGTACGAGGCCCAGGTGGCGGAGGCCAACGCCCGCGCCGACCGCAC
CAAGGCGGAGTTTGAGCGGGCACGTGAGGAGTGGCGGCTGAGCGTCGAGGCGATGACGGCGTCCC
ACCAGGAGAACGAGGAGTTTTACGTGCGGGAGATCGAGGCGTTGAAGCGGGGCGGGGAGGGGGAT
GGGCTGGGTGACGGGCAGGGGGATGGGGGTGAGAATGGGGGCGAGATGGAGGAGCGCGTGCGGGA
GATGGAGGAGCGCGTGAGGGAGGAGGAGGCCCGGGTGAGGGAGGT
Right flanking sequence: Indices 62393 -- 62892
CGTCTCCGCGAGGAGGAGGCCCGCGCCGCCGAGTACCAGCACACCGCCGAGGCCCACCAGCGCAC
CATAGACACCCACCAGCGCACCATCCACGACCACCAGCGCACCATCGCCACCCACAAAGAAACCC
TAGACGCCCGCGCCGCCGACCTGGAGCTTGCGGCCCGGGTGGCGGAGCTCGAGCGCCAGGTGGAG
GAGGCCCGGCGTGAGACGGAGGAGGCCCGGGAGGAGGCCCGGCGCCAGACGGAAGCGGCCCAGAA
CTTGGCCCAGAACCTGGCCCAGGACAACACCCACAACGAGTCGGAGCCGGGCACCGGGCTCAATG
GGCGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAAAGAACCGGCTGCTCAAACAGCTCCTCGCC
GAGGGCGGGTCCGACCCGGACAAGCTCGACGACTTGGAGGGCAAGATCAAGCTGCTCACGCGCGA
GAACATCGCCATCAAGGAGGCGATGGCGGAGGCGGACCAGCTGAC
Found at i:62348 original size:42 final size:42
Alignment explanation
Indices: 62309--62391 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
62299 GGAGGAGGCC
* *
62309 CGGGTGAGGGAGGTGGAGGAGAGGGCC-CGCGCCGCGGAGGAA
1 CGGGCGAGGGAGGAGGAGGAGAGGGCCACG-GCCGCGGAGGAA
* *
62351 CGGGCGCGGGAGGAGGAGGCGAGGGCCACGGCCGCGGAGGA
1 CGGGCGAGGGAGGAGGAGGAGAGGGCCACGGCCGCGGAGGA
62392 GCGTCTCCGC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 34 0.94
43 2 0.06
ACGTcount: A:0.18, C:0.22, G:0.58, T:0.02
Consensus pattern (42 bp):
CGGGCGAGGGAGGAGGAGGAGAGGGCCACGGCCGCGGAGGAA
Left flanking sequence: Indices 61809 -- 62308
GGTCGCGCCAGCTCAGCGACTCGCGCCCCCCGCTGCGCCGGCTGCCGGCGCTCCGCCCGCCGTCG
GAGGCCCGCGCCAGCCCCACCATCGCCGAGCACGAGCTCTACGCCGCCGAGATCGCCGAGCTCAA
GGGCAAGTGCGCCGCCACCGAGCGCCAGTTGGCAGACAAGGAGGCGATTTTGGGCGAGCTCCGCG
CCACCGTGGACGAGTTGCACCCGTTGTTGGAGCAGTACGAGGCCCAGGTGGCGGAGGCCAACGCC
CGCGCCGACCGCACCAAGGCGGAGTTTGAGCGGGCACGTGAGGAGTGGCGGCTGAGCGTCGAGGC
GATGACGGCGTCCCACCAGGAGAACGAGGAGTTTTACGTGCGGGAGATCGAGGCGTTGAAGCGGG
GCGGGGAGGGGGATGGGCTGGGTGACGGGCAGGGGGATGGGGGTGAGAATGGGGGCGAGATGGAG
GAGCGCGTGCGGGAGATGGAGGAGCGCGTGAGGGAGGAGGAGGCC
Right flanking sequence: Indices 62392 -- 62891
GCGTCTCCGCGAGGAGGAGGCCCGCGCCGCCGAGTACCAGCACACCGCCGAGGCCCACCAGCGCA
CCATAGACACCCACCAGCGCACCATCCACGACCACCAGCGCACCATCGCCACCCACAAAGAAACC
CTAGACGCCCGCGCCGCCGACCTGGAGCTTGCGGCCCGGGTGGCGGAGCTCGAGCGCCAGGTGGA
GGAGGCCCGGCGTGAGACGGAGGAGGCCCGGGAGGAGGCCCGGCGCCAGACGGAAGCGGCCCAGA
ACTTGGCCCAGAACCTGGCCCAGGACAACACCCACAACGAGTCGGAGCCGGGCACCGGGCTCAAT
GGGCGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAAAGAACCGGCTGCTCAAACAGCTCCTCGC
CGAGGGCGGGTCCGACCCGGACAAGCTCGACGACTTGGAGGGCAAGATCAAGCTGCTCACGCGCG
AGAACATCGCCATCAAGGAGGCGATGGCGGAGGCGGACCAGCTGA
Found at i:62469 original size:21 final size:21
Alignment explanation
Indices: 62445--62512 Score: 93
Period size: 21 Copynumber: 3.2 Consensus size: 21
62435 ACCGCCGAGG
*
62445 CCCACCAGCGCACCATAGACA
1 CCCACCAGCGCACCATCGACA
*
62466 CCCACCAGCGCACCATCCACGA
1 CCCACCAGCGCACCATCGAC-A
*
62488 -CCACCAGCGCACCATCGCCA
1 CCCACCAGCGCACCATCGACA
62508 CCCAC
1 CCCAC
62513 AAAGAAACCC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.02
21 39 0.95
22 1 0.02
ACGTcount: A:0.28, C:0.54, G:0.13, T:0.04
Consensus pattern (21 bp):
CCCACCAGCGCACCATCGACA
Left flanking sequence: Indices 61945 -- 62444
GTGCGCCGCCACCGAGCGCCAGTTGGCAGACAAGGAGGCGATTTTGGGCGAGCTCCGCGCCACCG
TGGACGAGTTGCACCCGTTGTTGGAGCAGTACGAGGCCCAGGTGGCGGAGGCCAACGCCCGCGCC
GACCGCACCAAGGCGGAGTTTGAGCGGGCACGTGAGGAGTGGCGGCTGAGCGTCGAGGCGATGAC
GGCGTCCCACCAGGAGAACGAGGAGTTTTACGTGCGGGAGATCGAGGCGTTGAAGCGGGGCGGGG
AGGGGGATGGGCTGGGTGACGGGCAGGGGGATGGGGGTGAGAATGGGGGCGAGATGGAGGAGCGC
GTGCGGGAGATGGAGGAGCGCGTGAGGGAGGAGGAGGCCCGGGTGAGGGAGGTGGAGGAGAGGGC
CCGCGCCGCGGAGGAACGGGCGCGGGAGGAGGAGGCGAGGGCCACGGCCGCGGAGGAGCGTCTCC
GCGAGGAGGAGGCCCGCGCCGCCGAGTACCAGCACACCGCCGAGG
Right flanking sequence: Indices 62513 -- 63012
AAAGAAACCCTAGACGCCCGCGCCGCCGACCTGGAGCTTGCGGCCCGGGTGGCGGAGCTCGAGCG
CCAGGTGGAGGAGGCCCGGCGTGAGACGGAGGAGGCCCGGGAGGAGGCCCGGCGCCAGACGGAAG
CGGCCCAGAACTTGGCCCAGAACCTGGCCCAGGACAACACCCACAACGAGTCGGAGCCGGGCACC
GGGCTCAATGGGCGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAAAGAACCGGCTGCTCAAACA
GCTCCTCGCCGAGGGCGGGTCCGACCCGGACAAGCTCGACGACTTGGAGGGCAAGATCAAGCTGC
TCACGCGCGAGAACATCGCCATCAAGGAGGCGATGGCGGAGGCGGACCAGCTGACGCTCGTGGAG
CAGCTCCAGAAGCAGATGGCCAAGCTCGCCAAGGAGAACAAGATGTTCAAGGAGGAGAAGGAGCT
CGGGGGCCTTTCCGGGGCCATGGACAGCACCGACCTGCTCGCCAA
Found at i:62474 original size:42 final size:42
Alignment explanation
Indices: 62427--62512 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
62417 GCCGCCGAGT
* *
62427 ACCAGCACACC-GCCGAGGCCCACCAGCGCACCATAGACACCC
1 ACCAGCACACCAGCC-ACGACCACCAGCGCACCATAGACACCC
* * * *
62469 ACCAGCGCACCATCCACGACCACCAGCGCACCATCGCCACCC
1 ACCAGCACACCAGCCACGACCACCAGCGCACCATAGACACCC
62511 AC
1 AC
62513 AAAGAAACCC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
42 35 0.95
43 2 0.05
ACGTcount: A:0.28, C:0.52, G:0.16, T:0.03
Consensus pattern (42 bp):
ACCAGCACACCAGCCACGACCACCAGCGCACCATAGACACCC
Left flanking sequence: Indices 61927 -- 62426
CGCCGAGCTCAAGGGCAAGTGCGCCGCCACCGAGCGCCAGTTGGCAGACAAGGAGGCGATTTTGG
GCGAGCTCCGCGCCACCGTGGACGAGTTGCACCCGTTGTTGGAGCAGTACGAGGCCCAGGTGGCG
GAGGCCAACGCCCGCGCCGACCGCACCAAGGCGGAGTTTGAGCGGGCACGTGAGGAGTGGCGGCT
GAGCGTCGAGGCGATGACGGCGTCCCACCAGGAGAACGAGGAGTTTTACGTGCGGGAGATCGAGG
CGTTGAAGCGGGGCGGGGAGGGGGATGGGCTGGGTGACGGGCAGGGGGATGGGGGTGAGAATGGG
GGCGAGATGGAGGAGCGCGTGCGGGAGATGGAGGAGCGCGTGAGGGAGGAGGAGGCCCGGGTGAG
GGAGGTGGAGGAGAGGGCCCGCGCCGCGGAGGAACGGGCGCGGGAGGAGGAGGCGAGGGCCACGG
CCGCGGAGGAGCGTCTCCGCGAGGAGGAGGCCCGCGCCGCCGAGT
Right flanking sequence: Indices 62513 -- 63012
AAAGAAACCCTAGACGCCCGCGCCGCCGACCTGGAGCTTGCGGCCCGGGTGGCGGAGCTCGAGCG
CCAGGTGGAGGAGGCCCGGCGTGAGACGGAGGAGGCCCGGGAGGAGGCCCGGCGCCAGACGGAAG
CGGCCCAGAACTTGGCCCAGAACCTGGCCCAGGACAACACCCACAACGAGTCGGAGCCGGGCACC
GGGCTCAATGGGCGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAAAGAACCGGCTGCTCAAACA
GCTCCTCGCCGAGGGCGGGTCCGACCCGGACAAGCTCGACGACTTGGAGGGCAAGATCAAGCTGC
TCACGCGCGAGAACATCGCCATCAAGGAGGCGATGGCGGAGGCGGACCAGCTGACGCTCGTGGAG
CAGCTCCAGAAGCAGATGGCCAAGCTCGCCAAGGAGAACAAGATGTTCAAGGAGGAGAAGGAGCT
CGGGGGCCTTTCCGGGGCCATGGACAGCACCGACCTGCTCGCCAA
Found at i:62622 original size:12 final size:12
Alignment explanation
Indices: 62605--62629 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62595 GGCGTGAGAC
62605 GGAGGAGGCCCG
1 GGAGGAGGCCCG
62617 GGAGGAGGCCCG
1 GGAGGAGGCCCG
62629 G
1 G
62630 CGCCAGACGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.60, T:0.00
Consensus pattern (12 bp):
GGAGGAGGCCCG
Left flanking sequence: Indices 62105 -- 62604
CGTGAGGAGTGGCGGCTGAGCGTCGAGGCGATGACGGCGTCCCACCAGGAGAACGAGGAGTTTTA
CGTGCGGGAGATCGAGGCGTTGAAGCGGGGCGGGGAGGGGGATGGGCTGGGTGACGGGCAGGGGG
ATGGGGGTGAGAATGGGGGCGAGATGGAGGAGCGCGTGCGGGAGATGGAGGAGCGCGTGAGGGAG
GAGGAGGCCCGGGTGAGGGAGGTGGAGGAGAGGGCCCGCGCCGCGGAGGAACGGGCGCGGGAGGA
GGAGGCGAGGGCCACGGCCGCGGAGGAGCGTCTCCGCGAGGAGGAGGCCCGCGCCGCCGAGTACC
AGCACACCGCCGAGGCCCACCAGCGCACCATAGACACCCACCAGCGCACCATCCACGACCACCAG
CGCACCATCGCCACCCACAAAGAAACCCTAGACGCCCGCGCCGCCGACCTGGAGCTTGCGGCCCG
GGTGGCGGAGCTCGAGCGCCAGGTGGAGGAGGCCCGGCGTGAGAC
Right flanking sequence: Indices 62630 -- 63129
CGCCAGACGGAAGCGGCCCAGAACTTGGCCCAGAACCTGGCCCAGGACAACACCCACAACGAGTC
GGAGCCGGGCACCGGGCTCAATGGGCGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAAAGAACC
GGCTGCTCAAACAGCTCCTCGCCGAGGGCGGGTCCGACCCGGACAAGCTCGACGACTTGGAGGGC
AAGATCAAGCTGCTCACGCGCGAGAACATCGCCATCAAGGAGGCGATGGCGGAGGCGGACCAGCT
GACGCTCGTGGAGCAGCTCCAGAAGCAGATGGCCAAGCTCGCCAAGGAGAACAAGATGTTCAAGG
AGGAGAAGGAGCTCGGGGGCCTTTCCGGGGCCATGGACAGCACCGACCTGCTCGCCAAGAACAAG
CAGTTGGCGGACGAGAACAACCAGCAGGAGAAGGCGATCTTGGAGCTCCGGGCGAAGGTGGAGGA
GCTCGAGGGGGCGGTGGAGCGGGAGAAGGAGGAGAAGGAGGCGGA
Found at i:62648 original size:33 final size:33
Alignment explanation
Indices: 62584--62648 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
62574 AGCGCCAGGT
** *
62584 GGAGGAGGCCCGGCGTGAGACGGAGGAGGCCCG
1 GGAGGAGGCCCGGCGCCAGACGGAAGAGGCCCG
*
62617 GGAGGAGGCCCGGCGCCAGACGGAAGCGGCCC
1 GGAGGAGGCCCGGCGCCAGACGGAAGAGGCCC
62649 AGAACTTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.18, C:0.29, G:0.51, T:0.02
Consensus pattern (33 bp):
GGAGGAGGCCCGGCGCCAGACGGAAGAGGCCCG
Left flanking sequence: Indices 62084 -- 62583
AAGGCGGAGTTTGAGCGGGCACGTGAGGAGTGGCGGCTGAGCGTCGAGGCGATGACGGCGTCCCA
CCAGGAGAACGAGGAGTTTTACGTGCGGGAGATCGAGGCGTTGAAGCGGGGCGGGGAGGGGGATG
GGCTGGGTGACGGGCAGGGGGATGGGGGTGAGAATGGGGGCGAGATGGAGGAGCGCGTGCGGGAG
ATGGAGGAGCGCGTGAGGGAGGAGGAGGCCCGGGTGAGGGAGGTGGAGGAGAGGGCCCGCGCCGC
GGAGGAACGGGCGCGGGAGGAGGAGGCGAGGGCCACGGCCGCGGAGGAGCGTCTCCGCGAGGAGG
AGGCCCGCGCCGCCGAGTACCAGCACACCGCCGAGGCCCACCAGCGCACCATAGACACCCACCAG
CGCACCATCCACGACCACCAGCGCACCATCGCCACCCACAAAGAAACCCTAGACGCCCGCGCCGC
CGACCTGGAGCTTGCGGCCCGGGTGGCGGAGCTCGAGCGCCAGGT
Right flanking sequence: Indices 62649 -- 63148
AGAACTTGGCCCAGAACCTGGCCCAGGACAACACCCACAACGAGTCGGAGCCGGGCACCGGGCTC
AATGGGCGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAAAGAACCGGCTGCTCAAACAGCTCCT
CGCCGAGGGCGGGTCCGACCCGGACAAGCTCGACGACTTGGAGGGCAAGATCAAGCTGCTCACGC
GCGAGAACATCGCCATCAAGGAGGCGATGGCGGAGGCGGACCAGCTGACGCTCGTGGAGCAGCTC
CAGAAGCAGATGGCCAAGCTCGCCAAGGAGAACAAGATGTTCAAGGAGGAGAAGGAGCTCGGGGG
CCTTTCCGGGGCCATGGACAGCACCGACCTGCTCGCCAAGAACAAGCAGTTGGCGGACGAGAACA
ACCAGCAGGAGAAGGCGATCTTGGAGCTCCGGGCGAAGGTGGAGGAGCTCGAGGGGGCGGTGGAG
CGGGAGAAGGAGGAGAAGGAGGCGGAGAAGGCGGCCAGGGCGAAG
Found at i:62661 original size:12 final size:12
Alignment explanation
Indices: 62644--62674 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
62634 AGACGGAAGC
*
62644 GGCCCAGAACTT
1 GGCCCAGAACCT
62656 GGCCCAGAACCT
1 GGCCCAGAACCT
62668 GGCCCAG
1 GGCCCAG
62675 GACAACACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.39, G:0.29, T:0.10
Consensus pattern (12 bp):
GGCCCAGAACCT
Left flanking sequence: Indices 62144 -- 62643
TCCCACCAGGAGAACGAGGAGTTTTACGTGCGGGAGATCGAGGCGTTGAAGCGGGGCGGGGAGGG
GGATGGGCTGGGTGACGGGCAGGGGGATGGGGGTGAGAATGGGGGCGAGATGGAGGAGCGCGTGC
GGGAGATGGAGGAGCGCGTGAGGGAGGAGGAGGCCCGGGTGAGGGAGGTGGAGGAGAGGGCCCGC
GCCGCGGAGGAACGGGCGCGGGAGGAGGAGGCGAGGGCCACGGCCGCGGAGGAGCGTCTCCGCGA
GGAGGAGGCCCGCGCCGCCGAGTACCAGCACACCGCCGAGGCCCACCAGCGCACCATAGACACCC
ACCAGCGCACCATCCACGACCACCAGCGCACCATCGCCACCCACAAAGAAACCCTAGACGCCCGC
GCCGCCGACCTGGAGCTTGCGGCCCGGGTGGCGGAGCTCGAGCGCCAGGTGGAGGAGGCCCGGCG
TGAGACGGAGGAGGCCCGGGAGGAGGCCCGGCGCCAGACGGAAGC
Right flanking sequence: Indices 62675 -- 63174
GACAACACCCACAACGAGTCGGAGCCGGGCACCGGGCTCAATGGGCGGCCCAGCTCCGAGCTCGT
CGAGCTCAAGGAAAAGAACCGGCTGCTCAAACAGCTCCTCGCCGAGGGCGGGTCCGACCCGGACA
AGCTCGACGACTTGGAGGGCAAGATCAAGCTGCTCACGCGCGAGAACATCGCCATCAAGGAGGCG
ATGGCGGAGGCGGACCAGCTGACGCTCGTGGAGCAGCTCCAGAAGCAGATGGCCAAGCTCGCCAA
GGAGAACAAGATGTTCAAGGAGGAGAAGGAGCTCGGGGGCCTTTCCGGGGCCATGGACAGCACCG
ACCTGCTCGCCAAGAACAAGCAGTTGGCGGACGAGAACAACCAGCAGGAGAAGGCGATCTTGGAG
CTCCGGGCGAAGGTGGAGGAGCTCGAGGGGGCGGTGGAGCGGGAGAAGGAGGAGAAGGAGGCGGA
GAAGGCGGCCAGGGCGAAGGCGGAGGAAGCCCGAGAGCTGGCGGA
Found at i:63175 original size:45 final size:48
Alignment explanation
Indices: 63124--63233 Score: 145
Period size: 48 Copynumber: 2.4 Consensus size: 48
63114 AGGAGAAGGA
* * * *
63124 GGCGGAGAAGGCGGCCAGGGCGAAGGC-G-G-AGGAAGCCCGAGAGCT
1 GGCGGAGAAGGAGGCCAGAGAGAAGGCAGAGAAGGAAGCCAGAGAGCT
*
63169 GGCGGAGAAGGAGGCCAGAGAGAAGGCAGAGAAGGAGGCCAGAGAGCT
1 GGCGGAGAAGGAGGCCAGAGAGAAGGCAGAGAAGGAAGCCAGAGAGCT
*
63217 GGCGGAGAAGGAAGCCA
1 GGCGGAGAAGGAGGCCA
63234 AGCAACTAGC
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
45 24 0.43
46 1 0.02
47 1 0.02
48 30 0.54
ACGTcount: A:0.31, C:0.18, G:0.49, T:0.02
Consensus pattern (48 bp):
GGCGGAGAAGGAGGCCAGAGAGAAGGCAGAGAAGGAAGCCAGAGAGCT
Left flanking sequence: Indices 62624 -- 63123
GCCCGGCGCCAGACGGAAGCGGCCCAGAACTTGGCCCAGAACCTGGCCCAGGACAACACCCACAA
CGAGTCGGAGCCGGGCACCGGGCTCAATGGGCGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAA
AGAACCGGCTGCTCAAACAGCTCCTCGCCGAGGGCGGGTCCGACCCGGACAAGCTCGACGACTTG
GAGGGCAAGATCAAGCTGCTCACGCGCGAGAACATCGCCATCAAGGAGGCGATGGCGGAGGCGGA
CCAGCTGACGCTCGTGGAGCAGCTCCAGAAGCAGATGGCCAAGCTCGCCAAGGAGAACAAGATGT
TCAAGGAGGAGAAGGAGCTCGGGGGCCTTTCCGGGGCCATGGACAGCACCGACCTGCTCGCCAAG
AACAAGCAGTTGGCGGACGAGAACAACCAGCAGGAGAAGGCGATCTTGGAGCTCCGGGCGAAGGT
GGAGGAGCTCGAGGGGGCGGTGGAGCGGGAGAAGGAGGAGAAGGA
Right flanking sequence: Indices 63234 -- 63733
AGCAACTAGCAGAAAAGGAAACCAAGGAGCAGGCAGCCCAGCTCGCCGAGCTCCGGGCCAAGGCC
CTGGCGGACGACACCCTCATCGCCCAGCTCCAGAGCCAGGTGGAGGCAATCATGGTGGATAAGGC
CGCGCTCGAAACCAAGCTCAAGGCCCGGGCCGACGACACCCCCGGGTCCCCGCGCGACCTGGACC
AGGTGCTGCGGCTCGAGGCCCAGATCGAGGAGCTCCGGCACGAGTTGACGATGCGCCCGACGTTC
GACGAGCTCCTGGAGGTCCAGCACTCGCTCGACGAGCTCGAGGAGGTCCACAAAACCGAGCTCCA
GGACAAGCGCGAGGAGATCTCGCGGTTGCTGTCCCAGTTGACGGCCGAGCGCACCCGGCTGCGGG
CGTACTCGTCGATGGCGCCCCCGAGCCGCGAGCTGATGGCCGCGGCGCTGATGGTGGGCCCGTCG
GCGTCGCGGGGCCTGTCGCCGTCGCTCGGGCGCGCGCTGACCATT
Found at i:63189 original size:24 final size:24
Alignment explanation
Indices: 63153--63233 Score: 108
Period size: 24 Copynumber: 3.4 Consensus size: 24
63143 GCGAAGGCGG
*
63153 AGGAAGCCCGAGAGCTGGCGGAGA
1 AGGAAGCCAGAGAGCTGGCGGAGA
* ** *
63177 AGGAGGCCAGAGAGAAGGCAGAGA
1 AGGAAGCCAGAGAGCTGGCGGAGA
*
63201 AGGAGGCCAGAGAGCTGGCGGAGA
1 AGGAAGCCAGAGAGCTGGCGGAGA
63225 AGGAAGCCA
1 AGGAAGCCA
63234 AGCAACTAGC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.35, C:0.17, G:0.46, T:0.02
Consensus pattern (24 bp):
AGGAAGCCAGAGAGCTGGCGGAGA
Left flanking sequence: Indices 62653 -- 63152
CTTGGCCCAGAACCTGGCCCAGGACAACACCCACAACGAGTCGGAGCCGGGCACCGGGCTCAATG
GGCGGCCCAGCTCCGAGCTCGTCGAGCTCAAGGAAAAGAACCGGCTGCTCAAACAGCTCCTCGCC
GAGGGCGGGTCCGACCCGGACAAGCTCGACGACTTGGAGGGCAAGATCAAGCTGCTCACGCGCGA
GAACATCGCCATCAAGGAGGCGATGGCGGAGGCGGACCAGCTGACGCTCGTGGAGCAGCTCCAGA
AGCAGATGGCCAAGCTCGCCAAGGAGAACAAGATGTTCAAGGAGGAGAAGGAGCTCGGGGGCCTT
TCCGGGGCCATGGACAGCACCGACCTGCTCGCCAAGAACAAGCAGTTGGCGGACGAGAACAACCA
GCAGGAGAAGGCGATCTTGGAGCTCCGGGCGAAGGTGGAGGAGCTCGAGGGGGCGGTGGAGCGGG
AGAAGGAGGAGAAGGAGGCGGAGAAGGCGGCCAGGGCGAAGGCGG
Right flanking sequence: Indices 63234 -- 63733
AGCAACTAGCAGAAAAGGAAACCAAGGAGCAGGCAGCCCAGCTCGCCGAGCTCCGGGCCAAGGCC
CTGGCGGACGACACCCTCATCGCCCAGCTCCAGAGCCAGGTGGAGGCAATCATGGTGGATAAGGC
CGCGCTCGAAACCAAGCTCAAGGCCCGGGCCGACGACACCCCCGGGTCCCCGCGCGACCTGGACC
AGGTGCTGCGGCTCGAGGCCCAGATCGAGGAGCTCCGGCACGAGTTGACGATGCGCCCGACGTTC
GACGAGCTCCTGGAGGTCCAGCACTCGCTCGACGAGCTCGAGGAGGTCCACAAAACCGAGCTCCA
GGACAAGCGCGAGGAGATCTCGCGGTTGCTGTCCCAGTTGACGGCCGAGCGCACCCGGCTGCGGG
CGTACTCGTCGATGGCGCCCCCGAGCCGCGAGCTGATGGCCGCGGCGCTGATGGTGGGCCCGTCG
GCGTCGCGGGGCCTGTCGCCGTCGCTCGGGCGCGCGCTGACCATT
Found at i:63213 original size:13 final size:13
Alignment explanation
Indices: 63173--63213 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
63163 AGAGCTGGCG
63173 GAGAAGGAGGCCA
1 GAGAAGGAGGCCA
*
63186 GAG-AGAAGG-CA
1 GAGAAGGAGGCCA
63197 GAGAAGGAGGCCA
1 GAGAAGGAGGCCA
63210 GAGA
1 GAGA
63214 GCTGGCGGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 5 0.21
12 10 0.42
13 9 0.38
ACGTcount: A:0.41, C:0.12, G:0.46, T:0.00
Consensus pattern (13 bp):
GAGAAGGAGGCCA
Left flanking sequence: Indices 62673 -- 63172
AGGACAACACCCACAACGAGTCGGAGCCGGGCACCGGGCTCAATGGGCGGCCCAGCTCCGAGCTC
GTCGAGCTCAAGGAAAAGAACCGGCTGCTCAAACAGCTCCTCGCCGAGGGCGGGTCCGACCCGGA
CAAGCTCGACGACTTGGAGGGCAAGATCAAGCTGCTCACGCGCGAGAACATCGCCATCAAGGAGG
CGATGGCGGAGGCGGACCAGCTGACGCTCGTGGAGCAGCTCCAGAAGCAGATGGCCAAGCTCGCC
AAGGAGAACAAGATGTTCAAGGAGGAGAAGGAGCTCGGGGGCCTTTCCGGGGCCATGGACAGCAC
CGACCTGCTCGCCAAGAACAAGCAGTTGGCGGACGAGAACAACCAGCAGGAGAAGGCGATCTTGG
AGCTCCGGGCGAAGGTGGAGGAGCTCGAGGGGGCGGTGGAGCGGGAGAAGGAGGAGAAGGAGGCG
GAGAAGGCGGCCAGGGCGAAGGCGGAGGAAGCCCGAGAGCTGGCG
Right flanking sequence: Indices 63214 -- 63713
GCTGGCGGAGAAGGAAGCCAAGCAACTAGCAGAAAAGGAAACCAAGGAGCAGGCAGCCCAGCTCG
CCGAGCTCCGGGCCAAGGCCCTGGCGGACGACACCCTCATCGCCCAGCTCCAGAGCCAGGTGGAG
GCAATCATGGTGGATAAGGCCGCGCTCGAAACCAAGCTCAAGGCCCGGGCCGACGACACCCCCGG
GTCCCCGCGCGACCTGGACCAGGTGCTGCGGCTCGAGGCCCAGATCGAGGAGCTCCGGCACGAGT
TGACGATGCGCCCGACGTTCGACGAGCTCCTGGAGGTCCAGCACTCGCTCGACGAGCTCGAGGAG
GTCCACAAAACCGAGCTCCAGGACAAGCGCGAGGAGATCTCGCGGTTGCTGTCCCAGTTGACGGC
CGAGCGCACCCGGCTGCGGGCGTACTCGTCGATGGCGCCCCCGAGCCGCGAGCTGATGGCCGCGG
CGCTGATGGTGGGCCCGTCGGCGTCGCGGGGCCTGTCGCCGTCGC
Found at i:63706 original size:18 final size:18
Alignment explanation
Indices: 63679--63713 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63669 CGCTGATGGT
*
63679 GGGCCCGTCGGCGTCGCG
1 GGGCCCGTCGCCGTCGCG
*
63697 GGGCCTGTCGCCGTCGC
1 GGGCCCGTCGCCGTCGC
63714 TCGGGCGCGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.40, G:0.46, T:0.14
Consensus pattern (18 bp):
GGGCCCGTCGCCGTCGCG
Left flanking sequence: Indices 63179 -- 63678
GAGGCCAGAGAGAAGGCAGAGAAGGAGGCCAGAGAGCTGGCGGAGAAGGAAGCCAAGCAACTAGC
AGAAAAGGAAACCAAGGAGCAGGCAGCCCAGCTCGCCGAGCTCCGGGCCAAGGCCCTGGCGGACG
ACACCCTCATCGCCCAGCTCCAGAGCCAGGTGGAGGCAATCATGGTGGATAAGGCCGCGCTCGAA
ACCAAGCTCAAGGCCCGGGCCGACGACACCCCCGGGTCCCCGCGCGACCTGGACCAGGTGCTGCG
GCTCGAGGCCCAGATCGAGGAGCTCCGGCACGAGTTGACGATGCGCCCGACGTTCGACGAGCTCC
TGGAGGTCCAGCACTCGCTCGACGAGCTCGAGGAGGTCCACAAAACCGAGCTCCAGGACAAGCGC
GAGGAGATCTCGCGGTTGCTGTCCCAGTTGACGGCCGAGCGCACCCGGCTGCGGGCGTACTCGTC
GATGGCGCCCCCGAGCCGCGAGCTGATGGCCGCGGCGCTGATGGT
Right flanking sequence: Indices 63714 -- 64213
TCGGGCGCGCGCTGACCATTCCCGAGGGGCTCGAGGAGTCGGTGGTGGCGGAGACGTCGCAGTTG
ATGGACCTGCTTCCGATCTTTACCCCGGAGCCGCTGGACCCGGCCGCAGGAAGGCTGGACTGGTG
TGGGCTCTGCGAGCGGGACGGGCACAGCTCGATCAATTGTCCCTACGAGAACGACATCTTTTAGG
ACGAGGAGTTAGTAGCGCTAGTACGGTTATAGGTTGCAGCGGTTGAAATGCAGGTGTTTGCATGG
GAGATGGGAGGTAGCATAGAAGAGACATTAATAGCACATAGTACGGTTATAGAGAGGTGGAGAAC
GGTGGAGAAAGGTGGAGAACGGTGGAGAACGGTTGCAAAAAGGTTGCAAATGCAGGGTGTATGCA
TGGAAGCCTGTCAAGTGAGAGTACTCAAGATGGGGGGTAGGGAGGCGGGGTGGGAGTAATGGGTA
GGTGTAATGGTGTGTGTAGCGTGGTGATGTTTATTTTGATGTTCT
Found at i:64044 original size:10 final size:10
Alignment explanation
Indices: 64029--64071 Score: 77
Period size: 10 Copynumber: 4.3 Consensus size: 10
64019 GTTATAGAGA
64029 GGTGGAGAAC
1 GGTGGAGAAC
*
64039 GGTGGAGAAA
1 GGTGGAGAAC
64049 GGTGGAGAAC
1 GGTGGAGAAC
64059 GGTGGAGAAC
1 GGTGGAGAAC
64069 GGT
1 GGT
64072 TGCAAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.30, C:0.07, G:0.51, T:0.12
Consensus pattern (10 bp):
GGTGGAGAAC
Left flanking sequence: Indices 63529 -- 64028
GCTCGAGGAGGTCCACAAAACCGAGCTCCAGGACAAGCGCGAGGAGATCTCGCGGTTGCTGTCCC
AGTTGACGGCCGAGCGCACCCGGCTGCGGGCGTACTCGTCGATGGCGCCCCCGAGCCGCGAGCTG
ATGGCCGCGGCGCTGATGGTGGGCCCGTCGGCGTCGCGGGGCCTGTCGCCGTCGCTCGGGCGCGC
GCTGACCATTCCCGAGGGGCTCGAGGAGTCGGTGGTGGCGGAGACGTCGCAGTTGATGGACCTGC
TTCCGATCTTTACCCCGGAGCCGCTGGACCCGGCCGCAGGAAGGCTGGACTGGTGTGGGCTCTGC
GAGCGGGACGGGCACAGCTCGATCAATTGTCCCTACGAGAACGACATCTTTTAGGACGAGGAGTT
AGTAGCGCTAGTACGGTTATAGGTTGCAGCGGTTGAAATGCAGGTGTTTGCATGGGAGATGGGAG
GTAGCATAGAAGAGACATTAATAGCACATAGTACGGTTATAGAGA
Right flanking sequence: Indices 64072 -- 64571
TGCAAAAAGGTTGCAAATGCAGGGTGTATGCATGGAAGCCTGTCAAGTGAGAGTACTCAAGATGG
GGGGTAGGGAGGCGGGGTGGGAGTAATGGGTAGGTGTAATGGTGTGTGTAGCGTGGTGATGTTTA
TTTTGATGTTCTAGACGTAGCGTGGTTTGTTGGTGGGTATTGGTGGTTATTGGTGGCTCTGGTGC
ACCAGTTCGAAAAATGATTCTGGTAGGCGAATCGTATGAGTGGGAAAGTTCTCGCAATTGGAGCC
ACCCGTTAACTCCTCTATCTGACGTCCACCTGTAAGCAATCGCCATCTATTTCTGCAGCCGACAT
CAATTACAAATGGTGACAAACTCGCTCGGCTCGGACTCTGTTGGGTTCCGAGTTTGTGGCATTAA
CTCCGAGCGGAACGGGCTACCGATGGTAGAAACAATCGAGGCAAGGCATCGAGGCAAGGCAATCA
AGTGATATGGGCTAGTTGCTGTTGCTACTCCTACGAACCACGGAC
Found at i:64514 original size:13 final size:13
Alignment explanation
Indices: 64496--64522 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64486 GGTAGAAACA
64496 ATCGAGGCAAGGC
1 ATCGAGGCAAGGC
64509 ATCGAGGCAAGGC
1 ATCGAGGCAAGGC
64522 A
1 A
64523 ATCAAGTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.37, T:0.07
Consensus pattern (13 bp):
ATCGAGGCAAGGC
Left flanking sequence: Indices 63996 -- 64495
AGACATTAATAGCACATAGTACGGTTATAGAGAGGTGGAGAACGGTGGAGAAAGGTGGAGAACGG
TGGAGAACGGTTGCAAAAAGGTTGCAAATGCAGGGTGTATGCATGGAAGCCTGTCAAGTGAGAGT
ACTCAAGATGGGGGGTAGGGAGGCGGGGTGGGAGTAATGGGTAGGTGTAATGGTGTGTGTAGCGT
GGTGATGTTTATTTTGATGTTCTAGACGTAGCGTGGTTTGTTGGTGGGTATTGGTGGTTATTGGT
GGCTCTGGTGCACCAGTTCGAAAAATGATTCTGGTAGGCGAATCGTATGAGTGGGAAAGTTCTCG
CAATTGGAGCCACCCGTTAACTCCTCTATCTGACGTCCACCTGTAAGCAATCGCCATCTATTTCT
GCAGCCGACATCAATTACAAATGGTGACAAACTCGCTCGGCTCGGACTCTGTTGGGTTCCGAGTT
TGTGGCATTAACTCCGAGCGGAACGGGCTACCGATGGTAGAAACA
Right flanking sequence: Indices 64523 -- 65022
ATCAAGTGATATGGGCTAGTTGCTGTTGCTACTCCTACGAACCACGGACTTGTTTCCTACAATGT
CAGCCTTCCTTCCCCACAATGCAAGTCTTACCAAGCCTAAAACCAAGCCATCTAAACACCCTCCA
CCGACACCTACCAACCCAAACGACTCAATGGCACCCAAACGGGCCACACAACCACACCAACCCCC
CACCACCACCACCTTATCCTCACTTTATCCCACCTACCCTTATCCCCCACCACCCCACCATCCCC
ACCTTTCCCTTTCACATGCCATATGCAGGCCACCCTAGCAACTATCACATGGACCCACCATATAA
CCCCGTAGCCACCAGAACCGCCACAAACACAAACCACCACCCCTAAGCTCGCTAGCAATGTCCCC
CACGTACACTGTCCACTTGCGCAACCACCAGCGGACGTTTTCCGCCAAGCTGACCCACAAGGAGA
ACGAGGTCTACGCCACGCAGCCGTTTGACCGGATCATCTTCCTTC
Found at i:72559 original size:36 final size:39
Alignment explanation
Indices: 72484--72563 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
72474 AGAGGACGAG
72484 GACGAACTTGAAGGAGAAGGGGGGTTTATTGGAGAAGAC
1 GACGAACTTGAAGGAGAAGGGGGGTTTATTGGAGAAGAC
* *
72523 GACGAA-TTCGAAGGGGAAGGGGGGTTTATTGGAGACGAC
1 GACGAACTT-GAAGGAGAAGGGGGGTTTATTGGAGAAGAC
72562 GA
1 GA
72564 TGGCGACTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 2 0.05
39 36 0.95
ACGTcount: A:0.31, C:0.09, G:0.42, T:0.17
Consensus pattern (39 bp):
GACGAACTTGAAGGAGAAGGGGGGTTTATTGGAGAAGAC
Left flanking sequence: Indices 71984 -- 72483
AGGTCGGGGTCCAGCCGTTGAAGGTGAGACCGTCCAAAGAGGACCCCGAGGACGACGAGCGGCTC
TACGCGGAGTACCAGACGGAGATGTACTACCCACCGGACATTGTCGACGGCGAAATCCCAAAGAA
CACCTTTGGCAACATCGACTGCTACGTCCCGCTGATGATCCCGAGCAACGGGTACTTGATCCCCG
AGGAAGACTATCCGCTAAAATTGGCAGAGCGAGCAGCCCGCATCATTGGCGTGGACTACGCACGA
GCAGTGGTGGGGTTCTCCTTCAAGGGCCGGGCCAACGTCAAGGCCAAGGAGGGGGGAGTGGTTAT
TGATGCTCAGTATCGCGAAGCCATGGAAGCGGTGATGGACTGTTTGATCGAGGAAGAGGTGGAGC
AGGTACGCCGCGAGAAGGAGCTCCAAAGCCTCAAGCTCTGGAAGTTTTTCATCACCAAGCTCCGG
TTGGGTGAGAGATTGGACCGGGTGCACGGAGAGGTAGAGGACGAG
Right flanking sequence: Indices 72564 -- 73063
TGGCGACTCTGACGCTTCCTTTGTGGTTGAGAGTGATGGCAGCGGGCCAGATATAGACGAGAGAC
GGCCGTTCACCACAGAGTCACCCGAGGCCGGGTTCTTTCACGACGAACCTGCTGGCGGGTTGGAT
GAGAGAGACGGCGATGAATGTGGTGGGTTTATGGTTGAAGACGAAGGTGGAGGGTTTGTGCAAGA
CGATGAAGGCGGTGGTTTTGTGGTAGAAGACGATGAAGGCGGTGGTTTTGTGGTGGATGACGATG
AAGATGGAGGCTTTGTGGTGGATGACGATGAAGATGGGGGTTTCATCGTGGATGATGATGAACGG
GGCGGTTTCGTGCCTGAGTCTGAAGAGGCTGATGAAAATAAAAGTGGAAAACACACTGCAGGTGG
CACTGGCCCTGGAGGCCCCGGTGGCCCTGGTGGCCCCGGTTTACATGGCTTTGATGTTGAAAGGT
CCCAAACTCCCCATTCAGGGCTCAACTCGGTCGGGTTTCGGCCCG
Found at i:72778 original size:27 final size:28
Alignment explanation
Indices: 72748--72810 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 28
72738 AGGTGGAGGG
72748 TTTGTG-CAAGACGATGAAGGCGGTGGT
1 TTTGTGACAAGACGATGAAGGCGGTGGT
*
72775 TTTGTGGTAGAAGACGATGAAGGCGGTGGT
1 TTTGT-G-ACAAGACGATGAAGGCGGTGGT
72805 TTTGTG
1 TTTGTG
72811 GTGGATGACG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 5 0.16
28 1 0.03
29 1 0.03
30 25 0.78
ACGTcount: A:0.21, C:0.08, G:0.41, T:0.30
Consensus pattern (28 bp):
TTTGTGACAAGACGATGAAGGCGGTGGT
Left flanking sequence: Indices 72248 -- 72747
TGGTGGGGTTCTCCTTCAAGGGCCGGGCCAACGTCAAGGCCAAGGAGGGGGGAGTGGTTATTGAT
GCTCAGTATCGCGAAGCCATGGAAGCGGTGATGGACTGTTTGATCGAGGAAGAGGTGGAGCAGGT
ACGCCGCGAGAAGGAGCTCCAAAGCCTCAAGCTCTGGAAGTTTTTCATCACCAAGCTCCGGTTGG
GTGAGAGATTGGACCGGGTGCACGGAGAGGTAGAGGACGAGGACGAACTTGAAGGAGAAGGGGGG
TTTATTGGAGAAGACGACGAATTCGAAGGGGAAGGGGGGTTTATTGGAGACGACGATGGCGACTC
TGACGCTTCCTTTGTGGTTGAGAGTGATGGCAGCGGGCCAGATATAGACGAGAGACGGCCGTTCA
CCACAGAGTCACCCGAGGCCGGGTTCTTTCACGACGAACCTGCTGGCGGGTTGGATGAGAGAGAC
GGCGATGAATGTGGTGGGTTTATGGTTGAAGACGAAGGTGGAGGG
Right flanking sequence: Indices 72811 -- 73310
GTGGATGACGATGAAGATGGAGGCTTTGTGGTGGATGACGATGAAGATGGGGGTTTCATCGTGGA
TGATGATGAACGGGGCGGTTTCGTGCCTGAGTCTGAAGAGGCTGATGAAAATAAAAGTGGAAAAC
ACACTGCAGGTGGCACTGGCCCTGGAGGCCCCGGTGGCCCTGGTGGCCCCGGTTTACATGGCTTT
GATGTTGAAAGGTCCCAAACTCCCCATTCAGGGCTCAACTCGGTCGGGTTTCGGCCCGGTTCTGA
GCTTATGGAGGCCGTGGGGCGTCCACGAGACTCTCCCGCCGTGGCTCTGTCGATGGGAGACGCCG
ACGAGATCGCTCTCTTGACGATGCTGGACAACATGTTCCACTTCAACGACGATGGAGACTTGATC
TACGATCCAGTGGAGCAGCCCGAGCTGTTGCATGTGCCACCAAAGCCCCCGTTGGCGGCTCCTGT
GCCCAAGAAACCCCTAGCGGTGGCTGTAGACTCTCCCGCGCCCAC
Found at i:72857 original size:30 final size:30
Alignment explanation
Indices: 72757--72885 Score: 141
Period size: 30 Copynumber: 4.3 Consensus size: 30
72747 GTTTGTGCAA
* * *
72757 GACGATGAAGGCGGTGGTTTTGTGGTAGAA
1 GACGATGAAGACGGTGGTTTTGTGGTGGAT
*
72787 GACGATGAAGGCGGTGGTTTTGTGGTGGAT
1 GACGATGAAGACGGTGGTTTTGTGGTGGAT
* * *
72817 GACGATGAAGATGGAGGCTTTGTGGTGGAT
1 GACGATGAAGACGGTGGTTTTGTGGTGGAT
* * ** *
72847 GACGATGAAGATGGGGGTTTCATCGTGGAT
1 GACGATGAAGACGGTGGTTTTGTGGTGGAT
*
72877 GATGATGAA
1 GACGATGAA
72886 CGGGGCGGTT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 87 1.00
ACGTcount: A:0.23, C:0.07, G:0.43, T:0.27
Consensus pattern (30 bp):
GACGATGAAGACGGTGGTTTTGTGGTGGAT
Left flanking sequence: Indices 72257 -- 72756
TCTCCTTCAAGGGCCGGGCCAACGTCAAGGCCAAGGAGGGGGGAGTGGTTATTGATGCTCAGTAT
CGCGAAGCCATGGAAGCGGTGATGGACTGTTTGATCGAGGAAGAGGTGGAGCAGGTACGCCGCGA
GAAGGAGCTCCAAAGCCTCAAGCTCTGGAAGTTTTTCATCACCAAGCTCCGGTTGGGTGAGAGAT
TGGACCGGGTGCACGGAGAGGTAGAGGACGAGGACGAACTTGAAGGAGAAGGGGGGTTTATTGGA
GAAGACGACGAATTCGAAGGGGAAGGGGGGTTTATTGGAGACGACGATGGCGACTCTGACGCTTC
CTTTGTGGTTGAGAGTGATGGCAGCGGGCCAGATATAGACGAGAGACGGCCGTTCACCACAGAGT
CACCCGAGGCCGGGTTCTTTCACGACGAACCTGCTGGCGGGTTGGATGAGAGAGACGGCGATGAA
TGTGGTGGGTTTATGGTTGAAGACGAAGGTGGAGGGTTTGTGCAA
Right flanking sequence: Indices 72886 -- 73385
CGGGGCGGTTTCGTGCCTGAGTCTGAAGAGGCTGATGAAAATAAAAGTGGAAAACACACTGCAGG
TGGCACTGGCCCTGGAGGCCCCGGTGGCCCTGGTGGCCCCGGTTTACATGGCTTTGATGTTGAAA
GGTCCCAAACTCCCCATTCAGGGCTCAACTCGGTCGGGTTTCGGCCCGGTTCTGAGCTTATGGAG
GCCGTGGGGCGTCCACGAGACTCTCCCGCCGTGGCTCTGTCGATGGGAGACGCCGACGAGATCGC
TCTCTTGACGATGCTGGACAACATGTTCCACTTCAACGACGATGGAGACTTGATCTACGATCCAG
TGGAGCAGCCCGAGCTGTTGCATGTGCCACCAAAGCCCCCGTTGGCGGCTCCTGTGCCCAAGAAA
CCCCTAGCGGTGGCTGTAGACTCTCCCGCGCCCACGCCACCCAAGCCATTGGTCCAGGAACTGCC
GTCTCCGACGCCCATCTCCGAGCCTGACCCGCTGATCTCACCAGA
Found at i:72980 original size:18 final size:18
Alignment explanation
Indices: 72957--72993 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
72947 CAGGTGGCAC
72957 TGGCCCTGGAGGCCCCGG
1 TGGCCCTGGAGGCCCCGG
*
72975 TGGCCCTGGTGGCCCCGG
1 TGGCCCTGGAGGCCCCGG
72993 T
1 T
72994 TTACATGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.03, C:0.38, G:0.43, T:0.16
Consensus pattern (18 bp):
TGGCCCTGGAGGCCCCGG
Left flanking sequence: Indices 72457 -- 72956
CGGGTGCACGGAGAGGTAGAGGACGAGGACGAACTTGAAGGAGAAGGGGGGTTTATTGGAGAAGA
CGACGAATTCGAAGGGGAAGGGGGGTTTATTGGAGACGACGATGGCGACTCTGACGCTTCCTTTG
TGGTTGAGAGTGATGGCAGCGGGCCAGATATAGACGAGAGACGGCCGTTCACCACAGAGTCACCC
GAGGCCGGGTTCTTTCACGACGAACCTGCTGGCGGGTTGGATGAGAGAGACGGCGATGAATGTGG
TGGGTTTATGGTTGAAGACGAAGGTGGAGGGTTTGTGCAAGACGATGAAGGCGGTGGTTTTGTGG
TAGAAGACGATGAAGGCGGTGGTTTTGTGGTGGATGACGATGAAGATGGAGGCTTTGTGGTGGAT
GACGATGAAGATGGGGGTTTCATCGTGGATGATGATGAACGGGGCGGTTTCGTGCCTGAGTCTGA
AGAGGCTGATGAAAATAAAAGTGGAAAACACACTGCAGGTGGCAC
Right flanking sequence: Indices 72994 -- 73493
TTACATGGCTTTGATGTTGAAAGGTCCCAAACTCCCCATTCAGGGCTCAACTCGGTCGGGTTTCG
GCCCGGTTCTGAGCTTATGGAGGCCGTGGGGCGTCCACGAGACTCTCCCGCCGTGGCTCTGTCGA
TGGGAGACGCCGACGAGATCGCTCTCTTGACGATGCTGGACAACATGTTCCACTTCAACGACGAT
GGAGACTTGATCTACGATCCAGTGGAGCAGCCCGAGCTGTTGCATGTGCCACCAAAGCCCCCGTT
GGCGGCTCCTGTGCCCAAGAAACCCCTAGCGGTGGCTGTAGACTCTCCCGCGCCCACGCCACCCA
AGCCATTGGTCCAGGAACTGCCGTCTCCGACGCCCATCTCCGAGCCTGACCCGCTGATCTCACCA
GAGGAAGCCCGGAGAATGTCCGAAGAAGAGGAAGAGCTCGGGTTTGAGTACGAGTCCGAATAGCA
TAACGTTGATTTGTAGCATAAAAGTTTTGATTAAGTTTTGATTAA
Found at i:73502 original size:13 final size:11
Alignment explanation
Indices: 73470--73494 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73460 TGTAGCATAA
73470 AAGTTTTGATT
1 AAGTTTTGATT
73481 AAGTTTTGATT
1 AAGTTTTGATT
73492 AAG
1 AAG
73495 CGTTTTGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (11 bp):
AAGTTTTGATT
Left flanking sequence: Indices 72970 -- 73469
CCCGGTGGCCCTGGTGGCCCCGGTTTACATGGCTTTGATGTTGAAAGGTCCCAAACTCCCCATTC
AGGGCTCAACTCGGTCGGGTTTCGGCCCGGTTCTGAGCTTATGGAGGCCGTGGGGCGTCCACGAG
ACTCTCCCGCCGTGGCTCTGTCGATGGGAGACGCCGACGAGATCGCTCTCTTGACGATGCTGGAC
AACATGTTCCACTTCAACGACGATGGAGACTTGATCTACGATCCAGTGGAGCAGCCCGAGCTGTT
GCATGTGCCACCAAAGCCCCCGTTGGCGGCTCCTGTGCCCAAGAAACCCCTAGCGGTGGCTGTAG
ACTCTCCCGCGCCCACGCCACCCAAGCCATTGGTCCAGGAACTGCCGTCTCCGACGCCCATCTCC
GAGCCTGACCCGCTGATCTCACCAGAGGAAGCCCGGAGAATGTCCGAAGAAGAGGAAGAGCTCGG
GTTTGAGTACGAGTCCGAATAGCATAACGTTGATTTGTAGCATAA
Right flanking sequence: Indices 73495 -- 73994
CGTTTTGAGAAATAGGGGCGACACAGGGGCAATTGATCGGCACCGTCAACGGGCTTATCTTGGGC
AATCTTGGTGGTGGGTTATATGCAGGTCACTAAAGTCAAGCGAACAAGGTCCCAACGTAGACCCA
CTCAAGCTGTTTGGAAGGGAATTGACACCGGAAAATTGTTATTTGGGTTGGAAGGTCAAGCTGTG
AATGTTTGTTTGGCCGTTTTCTGGTTTGCATTTCGTTAAAAGATTTACAGTTCTGGAAGCCATAA
GAAATGAGGTAGTAAAAGTTCTAGGCCTTATGATTAGCAAAAGACCTCGTGGTAGTTTGATAGAG
TGTTTAGAGTATCCACCACTTTTATTTTTTATGTGTTTGATTATTGAACACATCACTTCTCGAGT
ATACTTTCAAGTTTAGGCAAAGTACCAAAAATTGAAGACCATATTAGCGAAGGGGCAAGCATTAA
ATATTTCCCCATCGTCGTTAACACTAATCCATTACTGGTTTATCA
Found at i:75543 original size:13 final size:14
Alignment explanation
Indices: 75525--75590 Score: 86
Period size: 13 Copynumber: 5.0 Consensus size: 14
75515 GATCACCTAA
*
75525 GTCCAACTCGA-CC
1 GTCCAAATCGACCC
75538 GTCCAAATCGACCC
1 GTCCAAATCGACCC
*
75552 GT-CTAATCGACCC
1 GTCCAAATCGACCC
75565 GT-CAAATCGACCC
1 GTCCAAATCGACCC
75578 GT-CAAATCGACCC
1 GTCCAAATCGACCC
75591 TACTGGTACT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
13 45 0.92
14 4 0.08
ACGTcount: A:0.27, C:0.41, G:0.15, T:0.17
Consensus pattern (14 bp):
GTCCAAATCGACCC
Left flanking sequence: Indices 75025 -- 75524
GGCTCGTTTGTGCTTGTGGCCATTGGCATGGAGATCGGGTTTATTCTCTGGCTCCGGCCCGTGTA
CCGGAACGGGACCGAGTGGCCCATGCTCATCTTTGGCATTTTGGCCCTGGTGCTCTTGGCGGTGG
GTTTGATCCCGCCTTATTTTGAGTTGGCCAAGCGGAGAGGCCGGGTGGTGGGGATAAACTTTGTG
TTTTTGGCCATGGACTCGCTTGGGGCTTTGTTCTCGATGTTGTCGATTATCGTCGGGGAGATGGA
CATCATGTCGTTGGTGCTCTACCTGGTGGTGTTGGCGCTCGAGCTAGGGATTTTTAGTAGTCAGG
TGGTGTGGTACGTGGCGTTTGGGGGCCGCCAGACGCTACGGGAGGAGAAGGAGCAGGTGGACCAC
GAGACGCTCAAGCTGGAGGACGTCCGAGTGGTGTCGGTGGAAATGAAGGAGGGGTGAGAGGAAGA
GGCTGGCACTGTCGAGTGGTTCCTCTCGCATTATTGATCACCTAA
Right flanking sequence: Indices 75591 -- 76090
TACTGGTACTACACCGTTTCACTAATAACCAACCTATTCGTTAGCATTTCATTTTTAATAGTCAT
TCTAATCAACACTTTTACGTTATCAACCCAGTTTGCCACCATTGTTCCTGTTTCACCGGCCCCCC
TATACAACACACTACCTTCCAACCAACCCACACAACCCACACAATACCGCGTATTAGCCTTCAAC
CTCCCCACAACCGCTTCTTAAACCGCTTCTTATACCACTCTTATACCACCCTCTACCTTCTACAC
TCCCTTTCTCCCTCCGCCTTTCCCCCATCTCCCCACTCCATTTTTCCCTACACTCTCGCCAACAC
ACCACCCGATTCCACCAATCCACCCGGATCCACCCCAACCGCGTAGAACCACCAAAAAAACACCC
AAACCCACCGTAGACACCCCCACCACCACCCCGCCACCATCCAACTCCTCTCTTTCCCCGCCCCG
CCTCCCCAATGGCCGCCCGTCCTGTCCCGCCCCACCATTTTTTCG
Found at i:75570 original size:26 final size:27
Alignment explanation
Indices: 75532--75590 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 27
75522 TAAGTCCAAC
*
75532 TCGA-CCGTCCAAATCGACCCGTCTAA
1 TCGACCCGTCCAAATCGACCCGTCAAA
75558 TCGACCCGT-CAAATCGACCCGTCAAA
1 TCGACCCGTCCAAATCGACCCGTCAAA
75584 TCGACCC
1 TCGACCC
75591 TACTGGTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.27, C:0.41, G:0.15, T:0.17
Consensus pattern (27 bp):
TCGACCCGTCCAAATCGACCCGTCAAA
Left flanking sequence: Indices 75032 -- 75531
TTGTGCTTGTGGCCATTGGCATGGAGATCGGGTTTATTCTCTGGCTCCGGCCCGTGTACCGGAAC
GGGACCGAGTGGCCCATGCTCATCTTTGGCATTTTGGCCCTGGTGCTCTTGGCGGTGGGTTTGAT
CCCGCCTTATTTTGAGTTGGCCAAGCGGAGAGGCCGGGTGGTGGGGATAAACTTTGTGTTTTTGG
CCATGGACTCGCTTGGGGCTTTGTTCTCGATGTTGTCGATTATCGTCGGGGAGATGGACATCATG
TCGTTGGTGCTCTACCTGGTGGTGTTGGCGCTCGAGCTAGGGATTTTTAGTAGTCAGGTGGTGTG
GTACGTGGCGTTTGGGGGCCGCCAGACGCTACGGGAGGAGAAGGAGCAGGTGGACCACGAGACGC
TCAAGCTGGAGGACGTCCGAGTGGTGTCGGTGGAAATGAAGGAGGGGTGAGAGGAAGAGGCTGGC
ACTGTCGAGTGGTTCCTCTCGCATTATTGATCACCTAAGTCCAAC
Right flanking sequence: Indices 75591 -- 76090
TACTGGTACTACACCGTTTCACTAATAACCAACCTATTCGTTAGCATTTCATTTTTAATAGTCAT
TCTAATCAACACTTTTACGTTATCAACCCAGTTTGCCACCATTGTTCCTGTTTCACCGGCCCCCC
TATACAACACACTACCTTCCAACCAACCCACACAACCCACACAATACCGCGTATTAGCCTTCAAC
CTCCCCACAACCGCTTCTTAAACCGCTTCTTATACCACTCTTATACCACCCTCTACCTTCTACAC
TCCCTTTCTCCCTCCGCCTTTCCCCCATCTCCCCACTCCATTTTTCCCTACACTCTCGCCAACAC
ACCACCCGATTCCACCAATCCACCCGGATCCACCCCAACCGCGTAGAACCACCAAAAAAACACCC
AAACCCACCGTAGACACCCCCACCACCACCCCGCCACCATCCAACTCCTCTCTTTCCCCGCCCCG
CCTCCCCAATGGCCGCCCGTCCTGTCCCGCCCCACCATTTTTTCG
Found at i:76783 original size:42 final size:42
Alignment explanation
Indices: 76685--76773 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
76675 TGGCGAAAAC
*
76685 GGGTCGAAACCGGGCGAAAACGGCCAGGAAGGGGGTGAAGAT
1 GGGTCGAAACCGGGCGAAAACGGCCACGAAGGGGGTGAAGAT
* *
76727 GGGTCGAAACCGGGCGAAAATGGCCACGAGGGGGGTGAAGAT
1 GGGTCGAAACCGGGCGAAAACGGCCACGAAGGGGGTGAAGAT
76769 GGGTC
1 GGGTC
76774 ACAGCCGGGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.17, G:0.46, T:0.09
Consensus pattern (42 bp):
GGGTCGAAACCGGGCGAAAACGGCCACGAAGGGGGTGAAGAT
Left flanking sequence: Indices 76185 -- 76684
AGGAGCAGCACACCCGCGAGCTCCAGATCGAACAGGCCATCCAGCTCTACCAAAAGGCGCTCTCC
CACCACCAGAATGGCGAGTTGAGGCACAGCTACGACGTCTACAAGGAGGTGTTCAAGCTCGAGAT
CATCCTGAACCACTACTACGAAGAGGAGGCGCTCCTAAAGGGGCTCCAGAACGGCCAGGCCCTGA
CGCTGGTCGACGAGCTCCTGTTTTTGCTGCCCAACGTCAAGCGGCTCCGGTTCCTCTTGTTCCGC
AACCGCGGGATGCTCTACTTGGACATGTTGAAGGCGCACGTGGCGCTGGACCCGCCGCAGTTGCC
TGCCGAGGCGGAAATGCCCAAGTTGAAGAAGAAAAAGGGGAAGCCGAGGCCCGAGGCCGCCAGTG
GTCCGGTGATTGTGGAGATTGACGGGCAGCCCGTGGACGCGGACGGGGAGGCGATGGAAAAAGAC
GCGGAGGCGATGGAAGTGGATGAAGAAGCGCCCGGTGGCGAAAAC
Right flanking sequence: Indices 76774 -- 77273
ACAGCCGGGCCAAAAAGATCTGGAGATGGCTGAGAATGACTCTCCAGACGCAGAAAACCCGTCTA
ATCGCGTGAAAGCCACCCAATCGCCGAGCCCCGTGCCCATGGAGGTGGACGGGCCGCCGGCTGAG
GACTTTTCCGAGTTCCACACCGCCCCTAATAGCCCTACGAAGGGAGCAGCCACCCCAGAGCCGGC
CAAACAGGCACCGGGTGGGGTCAAAAGCCCGGATGCTGTTGAGAACGGGTCTGAATTCGCTGAAA
CCGACGCTGAAACCACCAAAAAAGAGGATGAATCCACCAAAACAGAGGATGAAACTACCAAAACA
GACGCTGAAAAGGGCGAAACGGGCGAAAACGACCCCAAGCTGAGCCAGACCGGGGCTGAAACCAC
CCAGGACGACGCAAACAACCACGGAAACGACCCCTCTCTGCAGAAAGACGGCTCGGAAGAGGCCA
AATCGGACTCGGAACACGCAGAAGTGGCCAAAACCGAGCCTGAAG
Found at i:77097 original size:21 final size:21
Alignment explanation
Indices: 77041--77100 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
77031 AAACCGACGC
*
77041 TGAAACCACCAAAAAAGAGGA
1 TGAAACCACCAAAACAGAGGA
*
77062 TGAATCCACCAAAACAGAGGA
1 TGAAACCACCAAAACAGAGGA
*
77083 TGAAACTACCAAAACAGA
1 TGAAACCACCAAAACAGA
77101 CGCTGAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.53, C:0.22, G:0.17, T:0.08
Consensus pattern (21 bp):
TGAAACCACCAAAACAGAGGA
Left flanking sequence: Indices 76541 -- 77040
AAAAAGGGGAAGCCGAGGCCCGAGGCCGCCAGTGGTCCGGTGATTGTGGAGATTGACGGGCAGCC
CGTGGACGCGGACGGGGAGGCGATGGAAAAAGACGCGGAGGCGATGGAAGTGGATGAAGAAGCGC
CCGGTGGCGAAAACGGGTCGAAACCGGGCGAAAACGGCCAGGAAGGGGGTGAAGATGGGTCGAAA
CCGGGCGAAAATGGCCACGAGGGGGGTGAAGATGGGTCACAGCCGGGCCAAAAAGATCTGGAGAT
GGCTGAGAATGACTCTCCAGACGCAGAAAACCCGTCTAATCGCGTGAAAGCCACCCAATCGCCGA
GCCCCGTGCCCATGGAGGTGGACGGGCCGCCGGCTGAGGACTTTTCCGAGTTCCACACCGCCCCT
AATAGCCCTACGAAGGGAGCAGCCACCCCAGAGCCGGCCAAACAGGCACCGGGTGGGGTCAAAAG
CCCGGATGCTGTTGAGAACGGGTCTGAATTCGCTGAAACCGACGC
Right flanking sequence: Indices 77101 -- 77600
CGCTGAAAAGGGCGAAACGGGCGAAAACGACCCCAAGCTGAGCCAGACCGGGGCTGAAACCACCC
AGGACGACGCAAACAACCACGGAAACGACCCCTCTCTGCAGAAAGACGGCTCGGAAGAGGCCAAA
TCGGACTCGGAACACGCAGAAGTGGCCAAAACCGAGCCTGAAGACTCAGAAGAGTCCAAACCTGA
CGACTCAGAAGTGACCAAACCGAAAGACACCGAAACCGAGCCAGAGGCCCCTTCCTCCCCCTCCG
ACGAGTCCGACAACGAGCCCGACCACGAGTCCGCGCTCGCGCTCTACCAGGCGATCGCCGACGGG
GCCTACGGGGTGGTGGCGCTGGTCACCGAGCCGCCCAACGCCGAGGAGGTGGTGGACAAGTTCAA
ACAGATGTTCTACTCGGTGGTGGACGACTTTTGCATCGCGCTTCTCTACCAGGAGGGCGACGAGC
GGATGCTCGCGGTGCTCCACGACCTCTACGCGTACGTGGGCCAGC
Found at i:77107 original size:21 final size:21
Alignment explanation
Indices: 77031--77108 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
77021 GAATTCGCTG
* *
77031 AAACCGACGCTGAAACCACCA
1 AAACAGACGATGAAACCACCA
* * *
77052 AAAAAGAGGATGAATCCACCA
1 AAACAGACGATGAAACCACCA
* *
77073 AAACAGAGGATGAAACTACCA
1 AAACAGACGATGAAACCACCA
*
77094 AAACAGACGCTGAAA
1 AAACAGACGATGAAA
77109 AGGGCGAAAC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.50, C:0.24, G:0.18, T:0.08
Consensus pattern (21 bp):
AAACAGACGATGAAACCACCA
Left flanking sequence: Indices 76531 -- 77030
GTTGAAGAAGAAAAAGGGGAAGCCGAGGCCCGAGGCCGCCAGTGGTCCGGTGATTGTGGAGATTG
ACGGGCAGCCCGTGGACGCGGACGGGGAGGCGATGGAAAAAGACGCGGAGGCGATGGAAGTGGAT
GAAGAAGCGCCCGGTGGCGAAAACGGGTCGAAACCGGGCGAAAACGGCCAGGAAGGGGGTGAAGA
TGGGTCGAAACCGGGCGAAAATGGCCACGAGGGGGGTGAAGATGGGTCACAGCCGGGCCAAAAAG
ATCTGGAGATGGCTGAGAATGACTCTCCAGACGCAGAAAACCCGTCTAATCGCGTGAAAGCCACC
CAATCGCCGAGCCCCGTGCCCATGGAGGTGGACGGGCCGCCGGCTGAGGACTTTTCCGAGTTCCA
CACCGCCCCTAATAGCCCTACGAAGGGAGCAGCCACCCCAGAGCCGGCCAAACAGGCACCGGGTG
GGGTCAAAAGCCCGGATGCTGTTGAGAACGGGTCTGAATTCGCTG
Right flanking sequence: Indices 77109 -- 77608
AGGGCGAAACGGGCGAAAACGACCCCAAGCTGAGCCAGACCGGGGCTGAAACCACCCAGGACGAC
GCAAACAACCACGGAAACGACCCCTCTCTGCAGAAAGACGGCTCGGAAGAGGCCAAATCGGACTC
GGAACACGCAGAAGTGGCCAAAACCGAGCCTGAAGACTCAGAAGAGTCCAAACCTGACGACTCAG
AAGTGACCAAACCGAAAGACACCGAAACCGAGCCAGAGGCCCCTTCCTCCCCCTCCGACGAGTCC
GACAACGAGCCCGACCACGAGTCCGCGCTCGCGCTCTACCAGGCGATCGCCGACGGGGCCTACGG
GGTGGTGGCGCTGGTCACCGAGCCGCCCAACGCCGAGGAGGTGGTGGACAAGTTCAAACAGATGT
TCTACTCGGTGGTGGACGACTTTTGCATCGCGCTTCTCTACCAGGAGGGCGACGAGCGGATGCTC
GCGGTGCTCCACGACCTCTACGCGTACGTGGGCCAGCACCGGTTG
Found at i:77300 original size:24 final size:24
Alignment explanation
Indices: 77267--77316 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
77257 CAAAACCGAG
*
77267 CCTGAAGACTCAGAAGAGTCCAAA
1 CCTGAAGACTCAGAAGAGACCAAA
* *
77291 CCTGACGACTCAGAAGTGACCAAA
1 CCTGAAGACTCAGAAGAGACCAAA
77315 CC
1 CC
77317 GAAAGACACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.30, G:0.20, T:0.12
Consensus pattern (24 bp):
CCTGAAGACTCAGAAGAGACCAAA
Left flanking sequence: Indices 76767 -- 77266
ATGGGTCACAGCCGGGCCAAAAAGATCTGGAGATGGCTGAGAATGACTCTCCAGACGCAGAAAAC
CCGTCTAATCGCGTGAAAGCCACCCAATCGCCGAGCCCCGTGCCCATGGAGGTGGACGGGCCGCC
GGCTGAGGACTTTTCCGAGTTCCACACCGCCCCTAATAGCCCTACGAAGGGAGCAGCCACCCCAG
AGCCGGCCAAACAGGCACCGGGTGGGGTCAAAAGCCCGGATGCTGTTGAGAACGGGTCTGAATTC
GCTGAAACCGACGCTGAAACCACCAAAAAAGAGGATGAATCCACCAAAACAGAGGATGAAACTAC
CAAAACAGACGCTGAAAAGGGCGAAACGGGCGAAAACGACCCCAAGCTGAGCCAGACCGGGGCTG
AAACCACCCAGGACGACGCAAACAACCACGGAAACGACCCCTCTCTGCAGAAAGACGGCTCGGAA
GAGGCCAAATCGGACTCGGAACACGCAGAAGTGGCCAAAACCGAG
Right flanking sequence: Indices 77317 -- 77816
GAAAGACACCGAAACCGAGCCAGAGGCCCCTTCCTCCCCCTCCGACGAGTCCGACAACGAGCCCG
ACCACGAGTCCGCGCTCGCGCTCTACCAGGCGATCGCCGACGGGGCCTACGGGGTGGTGGCGCTG
GTCACCGAGCCGCCCAACGCCGAGGAGGTGGTGGACAAGTTCAAACAGATGTTCTACTCGGTGGT
GGACGACTTTTGCATCGCGCTTCTCTACCAGGAGGGCGACGAGCGGATGCTCGCGGTGCTCCACG
ACCTCTACGCGTACGTGGGCCAGCACCGGTTGGCGCGGTTCACGCTCGAGTACTCGATCGCGGGG
AAGCAGGAGCTGGACGACTTGTTGGCGCTTCTTCCGGTGGACCCAGGGGTGAAGGCGGAGCTCGA
GGCGCTTGTAGCAGCCCTTGAGGGGAGGGAGAGGGAGAGTGATTTGAAACAGGCTCTGAAACACG
ATTTGAAACAGGCTCTGAAACACGATTTGAAACACGATTCGAAAC
Found at i:77802 original size:12 final size:12
Alignment explanation
Indices: 77747--77817 Score: 79
Period size: 12 Copynumber: 5.9 Consensus size: 12
77737 GAGGGAGAGT
*
77747 GATTTGAAACAG
1 GATTTGAAACAC
* *
77759 GCTCTGAAACAC
1 GATTTGAAACAC
*
77771 GATTTGAAACAG
1 GATTTGAAACAC
* *
77783 GCTCTGAAACAC
1 GATTTGAAACAC
77795 GATTTGAAACAC
1 GATTTGAAACAC
*
77807 GATTCGAAACA
1 GATTTGAAACA
77818 GAGCGGTGTG
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (12 bp):
GATTTGAAACAC
Left flanking sequence: Indices 77247 -- 77746
CAGAAGTGGCCAAAACCGAGCCTGAAGACTCAGAAGAGTCCAAACCTGACGACTCAGAAGTGACC
AAACCGAAAGACACCGAAACCGAGCCAGAGGCCCCTTCCTCCCCCTCCGACGAGTCCGACAACGA
GCCCGACCACGAGTCCGCGCTCGCGCTCTACCAGGCGATCGCCGACGGGGCCTACGGGGTGGTGG
CGCTGGTCACCGAGCCGCCCAACGCCGAGGAGGTGGTGGACAAGTTCAAACAGATGTTCTACTCG
GTGGTGGACGACTTTTGCATCGCGCTTCTCTACCAGGAGGGCGACGAGCGGATGCTCGCGGTGCT
CCACGACCTCTACGCGTACGTGGGCCAGCACCGGTTGGCGCGGTTCACGCTCGAGTACTCGATCG
CGGGGAAGCAGGAGCTGGACGACTTGTTGGCGCTTCTTCCGGTGGACCCAGGGGTGAAGGCGGAG
CTCGAGGCGCTTGTAGCAGCCCTTGAGGGGAGGGAGAGGGAGAGT
Right flanking sequence: Indices 77818 -- 78317
GAGCGGTGTGTCCTCTATGACGTCATACTCCTACCTCGACTCCATCAAGGCCGACTTTGCGGCCC
AGATCGCCCAGACCCGCGCGTTTGGCCGGTGCAGCATCTCGGTCACGGGGCTGGCCGCCACCGAC
GGCCCCACCGTCGACTGGACCACCCTCGTCAACCAGCTCGACGCCAAGGTCGAGAAAAACATGCT
CGACGACGAGCTCGTGCGCGAGAAGCGCGGCAAACGCAACCTCGTGGACGCGTACTGGCTCACGG
AGCTGCCCATCGAGCGGGTCTCCGTGGAGGTGGTGGCGAAACTGGCCCCGGAACCGGAGCCCGAG
CCCATGGAGGTCGACCCAGAGCCCGAGCCCACCGAGGTGGTGGAGGTGCTGGCCACAGGCGACCC
CGTCGAGCCCGCGCCCGAGGAGATGCCCCAGGAAATGCGGGCCTCCAAGCGGCTCGCCCGCGTCG
GCGACTCGCTGCCAGACCTCCCGGCCACCCAGGTGGCGCCCGAGG
Found at i:77817 original size:24 final size:24
Alignment explanation
Indices: 77747--77805 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
77737 GAGGGAGAGT
77747 GATTTGAAACAGGCTCTGAAACAC
1 GATTTGAAACAGGCTCTGAAACAC
77771 GATTTGAAACAGGCTCTGAAACAC
1 GATTTGAAACAGGCTCTGAAACAC
77795 GATTTGAAACA
1 GATTTGAAACA
77806 CGATTCGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (24 bp):
GATTTGAAACAGGCTCTGAAACAC
Left flanking sequence: Indices 77247 -- 77746
CAGAAGTGGCCAAAACCGAGCCTGAAGACTCAGAAGAGTCCAAACCTGACGACTCAGAAGTGACC
AAACCGAAAGACACCGAAACCGAGCCAGAGGCCCCTTCCTCCCCCTCCGACGAGTCCGACAACGA
GCCCGACCACGAGTCCGCGCTCGCGCTCTACCAGGCGATCGCCGACGGGGCCTACGGGGTGGTGG
CGCTGGTCACCGAGCCGCCCAACGCCGAGGAGGTGGTGGACAAGTTCAAACAGATGTTCTACTCG
GTGGTGGACGACTTTTGCATCGCGCTTCTCTACCAGGAGGGCGACGAGCGGATGCTCGCGGTGCT
CCACGACCTCTACGCGTACGTGGGCCAGCACCGGTTGGCGCGGTTCACGCTCGAGTACTCGATCG
CGGGGAAGCAGGAGCTGGACGACTTGTTGGCGCTTCTTCCGGTGGACCCAGGGGTGAAGGCGGAG
CTCGAGGCGCTTGTAGCAGCCCTTGAGGGGAGGGAGAGGGAGAGT
Right flanking sequence: Indices 77806 -- 78305
CGATTCGAAACAGAGCGGTGTGTCCTCTATGACGTCATACTCCTACCTCGACTCCATCAAGGCCG
ACTTTGCGGCCCAGATCGCCCAGACCCGCGCGTTTGGCCGGTGCAGCATCTCGGTCACGGGGCTG
GCCGCCACCGACGGCCCCACCGTCGACTGGACCACCCTCGTCAACCAGCTCGACGCCAAGGTCGA
GAAAAACATGCTCGACGACGAGCTCGTGCGCGAGAAGCGCGGCAAACGCAACCTCGTGGACGCGT
ACTGGCTCACGGAGCTGCCCATCGAGCGGGTCTCCGTGGAGGTGGTGGCGAAACTGGCCCCGGAA
CCGGAGCCCGAGCCCATGGAGGTCGACCCAGAGCCCGAGCCCACCGAGGTGGTGGAGGTGCTGGC
CACAGGCGACCCCGTCGAGCCCGCGCCCGAGGAGATGCCCCAGGAAATGCGGGCCTCCAAGCGGC
TCGCCCGCGTCGGCGACTCGCTGCCAGACCTCCCGGCCACCCAGG
Found at i:79073 original size:12 final size:12
Alignment explanation
Indices: 79015--79151 Score: 154
Period size: 12 Copynumber: 11.4 Consensus size: 12
79005 GTGTGAGTGT
79015 TGAGCTGGCTGTC
1 TGAGCTGGCT-TC
79028 -GAGCTGGCTTC
1 TGAGCTGGCTTC
* *
79039 TGGGTCTGTC-TC
1 TGAG-CTGGCTTC
*
79051 T-AACGTGGCTTC
1 TGAGC-TGGCTTC
79063 TGAGCTGGCTTC
1 TGAGCTGGCTTC
*
79075 TAAGCTGGCTTC
1 TGAGCTGGCTTC
79087 TGAGCTGGCTTC
1 TGAGCTGGCTTC
*
79099 TGGGCTGGCTTC
1 TGAGCTGGCTTC
*
79111 TGGGCTGGCTTC
1 TGAGCTGGCTTC
* *
79123 TAAGCTGACTTC
1 TGAGCTGGCTTC
79135 TGAGCTGGCTTC
1 TGAGCTGGCTTC
79147 TGAGC
1 TGAGC
79152 CTATCTCTAC
Statistics
Matches: 105, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
10 1 0.01
11 5 0.05
12 93 0.89
13 6 0.06
ACGTcount: A:0.09, C:0.25, G:0.33, T:0.33
Consensus pattern (12 bp):
TGAGCTGGCTTC
Left flanking sequence: Indices 78515 -- 79014
GACGAGAAGATCAAGTTGCTCGACGTGGTGCTGGGGTTCAGCGACGCCGGGCTGCTGGCGGCGTC
CCAGGCGCCTCCCTTGCTGGACCAGGGGGTGGCCGACACCGTGGCTGCGATCAACGCGGGCAACA
TGCACTACTTGCGGGCCAAGACGGCGATTTTGGAGCGGTTGTTGCCCACGGTGGTGACCCACGAG
TGGCCCGCGAAGCTCGTGGCCACGGTGGTGCGGTGGTTGGTGCACTTGAGCGACTTTGCCGTGGG
CAAGTTGGGGCCCGAGGCGCTGGTGGCGGCGTACGAGCTCTTGGTGAGCGCGTACGTGGACCGCA
AGCGCGAGCTCGTGGCGCTGGTGGCGCTGAAGCGGGTGGGGCCGCTCCAGCTCCAGACGGTGCAG
CTCCGGGACGTGGTGGCGCGATGGGAGGGGGTGGTGGAGCGAATGGTGGCTGAGTCGACGGGTGT
GGCTGTTGAGGGTGGGACTGTAGAGCGAGTTGCGGGTGTGAGTGT
Right flanking sequence: Indices 79152 -- 79651
CTATCTCTACCCCCGCTGCCCCTGCCTCTTCCCTCCCCGCCCGCTTTGCCTGGGCCCAGGTCCAC
CTCTACAAGTGCTACAACATCTACAGCGCCGACAACCGGTTTGTGTTGGCCACGGTGGAGCAGAT
GAAGCACCGGACGGTCCCCCAGGTGGCCTACCCGAACTTCCGGCTGTTCCGCCCGTTGGAGCCCG
CCACGGTAGCCTCGGAGGCCACCACGCTCCGGGTGCTCGCGATGTTCGCCAAGATCCTCGGGCCA
GACTCCAACAACGAGTCCATCCGCCTCGTGGAGGAGATCTTGGCCCCGCTGGCGGCCGCGCTGCC
CACGGTGGACGCCATCAAGCGGTTCCTCGCGGCGCTGCCGGTGGAGATGAAGCTCCTGCTCTGGG
GCATTTTGTTTAGTCACTACCAGGCGCAGGACCTGGCGCAGTTCCAGCGCGGCTTCGAGGGGTTT
GTCGGCGCCATCCGCGAGTACGTGGCGCTGGACGACCCGGCGGTG
Found at i:79976 original size:21 final size:21
Alignment explanation
Indices: 79932--79977 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
79922 TACGACGGCA
* *
79932 AGGGAAATAATTCGGGCGACC
1 AGGGAAATAATTCGGGCAAAC
79953 AGGGAAATAATTCGGGCAAAC
1 AGGGAAATAATTCGGGCAAAC
79974 AGGG
1 AGGG
79978 CGAAACAGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.35, T:0.13
Consensus pattern (21 bp):
AGGGAAATAATTCGGGCAAAC
Left flanking sequence: Indices 79432 -- 79931
CCGCCTCGTGGAGGAGATCTTGGCCCCGCTGGCGGCCGCGCTGCCCACGGTGGACGCCATCAAGC
GGTTCCTCGCGGCGCTGCCGGTGGAGATGAAGCTCCTGCTCTGGGGCATTTTGTTTAGTCACTAC
CAGGCGCAGGACCTGGCGCAGTTCCAGCGCGGCTTCGAGGGGTTTGTCGGCGCCATCCGCGAGTA
CGTGGCGCTGGACGACCCGGCGGTGGTCGTCAAGGTGGTGGGCTTTGTAGGCACGCTTCTCGAGG
CGTTTTTGGGCACGTACTTGGCCCCCAGGAAGTGGCAGCTCCCCGCGGAGGCAGACCCAGCCACG
TTCGGGCGGTTGTTGTGGCTCTTTGAGCTCGTGTACGTGTTCTCGCTCCACGAGGAGGCGCTGAT
GCTCACCAGCCTCAAGCGGTCAGTGGAGCCGCGGCTGAAGGCGAGCTTCCAGAGCTTGAAGGACA
CGTTGGTGCGGGTGGCCACGGCGCTCGTGGTGTACTACGACGGCA
Right flanking sequence: Indices 79978 -- 80477
CGAAACAGGCGAAAACCTGGCCAACCTGGAAGAGAACCTGGAAGAAAACCTGGCCAACCAGGGTA
AAAATCCGGGCGAAAACCTGGCCAACCTGGGCAAAAACCAGAGCGAAAACCTGGGCAATAACCAG
AGCAAAACCCCTGGCAACAACCCAAACAACCCAAACAACAATTCGGTTGATTCCTCCAACCCCAA
CCCCGTCACCTTCTGTCTGACCATGCACGCGCACTTGGGCACCCGCCAGCTCTGCGCGGACGCCG
GCGGAATCTTCCTCGAGGTGTGCCAGGAGCGGGTCTTTGGCGCAGACACGGCCGAGGTGTGCCAG
CTCATCTTCTGCCGCCACCGCTACGCGCTCGCCATCGACGGGTTTGCCCCAAAGCAGCACGTTCG
GGCCAGTGCCAGCACCACTCCCCGGGCCCTAGACCGCACCACCACGTTGGAGCTCGCCCCGTTCA
TCCTTCCCCAGTGCTTCCGCCGCAACACCCTCGTGCACCCGCCCA
Found at i:80017 original size:12 final size:12
Alignment explanation
Indices: 80000--80030 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
79990 AAACCTGGCC
*
80000 AACCTGGAAGAG
1 AACCTGGAAGAA
80012 AACCTGGAAGAA
1 AACCTGGAAGAA
80024 AACCTGG
1 AACCTGG
80031 CCAACCAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.19, G:0.29, T:0.10
Consensus pattern (12 bp):
AACCTGGAAGAA
Left flanking sequence: Indices 79500 -- 79999
TCCTCGCGGCGCTGCCGGTGGAGATGAAGCTCCTGCTCTGGGGCATTTTGTTTAGTCACTACCAG
GCGCAGGACCTGGCGCAGTTCCAGCGCGGCTTCGAGGGGTTTGTCGGCGCCATCCGCGAGTACGT
GGCGCTGGACGACCCGGCGGTGGTCGTCAAGGTGGTGGGCTTTGTAGGCACGCTTCTCGAGGCGT
TTTTGGGCACGTACTTGGCCCCCAGGAAGTGGCAGCTCCCCGCGGAGGCAGACCCAGCCACGTTC
GGGCGGTTGTTGTGGCTCTTTGAGCTCGTGTACGTGTTCTCGCTCCACGAGGAGGCGCTGATGCT
CACCAGCCTCAAGCGGTCAGTGGAGCCGCGGCTGAAGGCGAGCTTCCAGAGCTTGAAGGACACGT
TGGTGCGGGTGGCCACGGCGCTCGTGGTGTACTACGACGGCAAGGGAAATAATTCGGGCGACCAG
GGAAATAATTCGGGCAAACAGGGCGAAACAGGCGAAAACCTGGCC
Right flanking sequence: Indices 80031 -- 80530
CCAACCAGGGTAAAAATCCGGGCGAAAACCTGGCCAACCTGGGCAAAAACCAGAGCGAAAACCTG
GGCAATAACCAGAGCAAAACCCCTGGCAACAACCCAAACAACCCAAACAACAATTCGGTTGATTC
CTCCAACCCCAACCCCGTCACCTTCTGTCTGACCATGCACGCGCACTTGGGCACCCGCCAGCTCT
GCGCGGACGCCGGCGGAATCTTCCTCGAGGTGTGCCAGGAGCGGGTCTTTGGCGCAGACACGGCC
GAGGTGTGCCAGCTCATCTTCTGCCGCCACCGCTACGCGCTCGCCATCGACGGGTTTGCCCCAAA
GCAGCACGTTCGGGCCAGTGCCAGCACCACTCCCCGGGCCCTAGACCGCACCACCACGTTGGAGC
TCGCCCCGTTCATCCTTCCCCAGTGCTTCCGCCGCAACACCCTCGTGCACCCGCCCAAGCACGAC
ACCCGGCTGATCATCGACGACTTCTACCAGGTGGTGGGCGACCCG
Found at i:80058 original size:33 final size:33
Alignment explanation
Indices: 80021--80096 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 33
80011 GAACCTGGAA
* *
80021 GAAAACCTGGCCAACCAGGGTAAAAATCC-GGGC
1 GAAAACCTGGCCAACCAGGGCAAAAA-CCAGAGC
*
80054 GAAAACCTGGCCAACCTGGGCAAAAACCAGAGC
1 GAAAACCTGGCCAACCAGGGCAAAAACCAGAGC
80087 GAAAACCTGG
1 GAAAACCTGG
80097 GCAATAACCA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
32 2 0.05
33 37 0.95
ACGTcount: A:0.38, C:0.28, G:0.26, T:0.08
Consensus pattern (33 bp):
GAAAACCTGGCCAACCAGGGCAAAAACCAGAGC
Left flanking sequence: Indices 79521 -- 80020
AGATGAAGCTCCTGCTCTGGGGCATTTTGTTTAGTCACTACCAGGCGCAGGACCTGGCGCAGTTC
CAGCGCGGCTTCGAGGGGTTTGTCGGCGCCATCCGCGAGTACGTGGCGCTGGACGACCCGGCGGT
GGTCGTCAAGGTGGTGGGCTTTGTAGGCACGCTTCTCGAGGCGTTTTTGGGCACGTACTTGGCCC
CCAGGAAGTGGCAGCTCCCCGCGGAGGCAGACCCAGCCACGTTCGGGCGGTTGTTGTGGCTCTTT
GAGCTCGTGTACGTGTTCTCGCTCCACGAGGAGGCGCTGATGCTCACCAGCCTCAAGCGGTCAGT
GGAGCCGCGGCTGAAGGCGAGCTTCCAGAGCTTGAAGGACACGTTGGTGCGGGTGGCCACGGCGC
TCGTGGTGTACTACGACGGCAAGGGAAATAATTCGGGCGACCAGGGAAATAATTCGGGCAAACAG
GGCGAAACAGGCGAAAACCTGGCCAACCTGGAAGAGAACCTGGAA
Right flanking sequence: Indices 80097 -- 80596
GCAATAACCAGAGCAAAACCCCTGGCAACAACCCAAACAACCCAAACAACAATTCGGTTGATTCC
TCCAACCCCAACCCCGTCACCTTCTGTCTGACCATGCACGCGCACTTGGGCACCCGCCAGCTCTG
CGCGGACGCCGGCGGAATCTTCCTCGAGGTGTGCCAGGAGCGGGTCTTTGGCGCAGACACGGCCG
AGGTGTGCCAGCTCATCTTCTGCCGCCACCGCTACGCGCTCGCCATCGACGGGTTTGCCCCAAAG
CAGCACGTTCGGGCCAGTGCCAGCACCACTCCCCGGGCCCTAGACCGCACCACCACGTTGGAGCT
CGCCCCGTTCATCCTTCCCCAGTGCTTCCGCCGCAACACCCTCGTGCACCCGCCCAAGCACGACA
CCCGGCTGATCATCGACGACTTCTACCAGGTGGTGGGCGACCCGAACTTCGAGACGGGCCCGCAC
GCGTCCGCGCTCGCACGCAACCACGCGGTGCTCGAGCAGTTCATG
Found at i:80129 original size:24 final size:24
Alignment explanation
Indices: 80066--80116 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
80056 AAACCTGGCC
80066 AACCTGGGCAAAAACCAGAGCGAA
1 AACCTGGGCAAAAACCAGAGCGAA
*
80090 AACCTGGGCAATAACCAGAGC-AA
1 AACCTGGGCAAAAACCAGAGCGAA
80113 AACC
1 AACC
80117 CCTGGCAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.45, C:0.27, G:0.22, T:0.06
Consensus pattern (24 bp):
AACCTGGGCAAAAACCAGAGCGAA
Left flanking sequence: Indices 79566 -- 80065
CGCAGGACCTGGCGCAGTTCCAGCGCGGCTTCGAGGGGTTTGTCGGCGCCATCCGCGAGTACGTG
GCGCTGGACGACCCGGCGGTGGTCGTCAAGGTGGTGGGCTTTGTAGGCACGCTTCTCGAGGCGTT
TTTGGGCACGTACTTGGCCCCCAGGAAGTGGCAGCTCCCCGCGGAGGCAGACCCAGCCACGTTCG
GGCGGTTGTTGTGGCTCTTTGAGCTCGTGTACGTGTTCTCGCTCCACGAGGAGGCGCTGATGCTC
ACCAGCCTCAAGCGGTCAGTGGAGCCGCGGCTGAAGGCGAGCTTCCAGAGCTTGAAGGACACGTT
GGTGCGGGTGGCCACGGCGCTCGTGGTGTACTACGACGGCAAGGGAAATAATTCGGGCGACCAGG
GAAATAATTCGGGCAAACAGGGCGAAACAGGCGAAAACCTGGCCAACCTGGAAGAGAACCTGGAA
GAAAACCTGGCCAACCAGGGTAAAAATCCGGGCGAAAACCTGGCC
Right flanking sequence: Indices 80117 -- 80616
CCTGGCAACAACCCAAACAACCCAAACAACAATTCGGTTGATTCCTCCAACCCCAACCCCGTCAC
CTTCTGTCTGACCATGCACGCGCACTTGGGCACCCGCCAGCTCTGCGCGGACGCCGGCGGAATCT
TCCTCGAGGTGTGCCAGGAGCGGGTCTTTGGCGCAGACACGGCCGAGGTGTGCCAGCTCATCTTC
TGCCGCCACCGCTACGCGCTCGCCATCGACGGGTTTGCCCCAAAGCAGCACGTTCGGGCCAGTGC
CAGCACCACTCCCCGGGCCCTAGACCGCACCACCACGTTGGAGCTCGCCCCGTTCATCCTTCCCC
AGTGCTTCCGCCGCAACACCCTCGTGCACCCGCCCAAGCACGACACCCGGCTGATCATCGACGAC
TTCTACCAGGTGGTGGGCGACCCGAACTTCGAGACGGGCCCGCACGCGTCCGCGCTCGCACGCAA
CCACGCGGTGCTCGAGCAGTTCATGGACACCACGCGGATCACCCC
Done.