sallet_2.scaffold.fasta.s42.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold14
Parameters: 2 7 7 80 10 50 500
Length:  166576

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--315	26	12.1	26	92	4	528	42	18	20	18	1.89
83--124	14	3.1	14	89	6	68	50	9	26	14	1.73
87--125	13	2.9	13	92	3	60	48	10	25	15	1.76
5453--5505	21	2.5	21	90	0	79	13	13	52	20	1.73
5469--5586	51	2.3	51	86	0	164	10	16	47	25	1.78
5541--5605	30	2.2	30	97	0	121	6	20	46	27	1.74
17750--17844	15	6.5	13	80	15	82	42	30	26	1	1.62
17759--17845	30	2.9	29	81	13	104	43	29	25	1	1.62
17750--17829	14	5.5	14	83	14	92	43	31	25	0	1.55
17750--17833	15	5.7	15	85	12	97	44	29	26	0	1.55
19787--19811	12	2.1	12	100	0	50	24	24	24	28	2.00
21249--21299	24	2.1	24	82	7	59	9	11	47	31	1.73
31469--31555	30	2.9	30	87	0	129	16	14	34	34	1.89
31806--31832	14	1.9	14	100	0	54	33	22	37	7	1.82
55520--55551	15	2.1	15	94	0	55	34	3	40	21	1.69
55635--55674	18	2.2	18	90	0	62	2	2	42	52	1.28
55644--55682	18	2.2	18	90	0	60	2	2	48	46	1.29
59673--59700	13	2.2	13	100	0	56	28	7	57	7	1.52
59769--59795	9	3.0	9	100	0	54	22	44	33	0	1.53
59913--59945	13	2.5	13	90	0	57	21	15	39	24	1.91
61050--61081	11	2.9	11	100	0	64	18	37	34	9	1.83
61708--61760	20	2.7	20	81	0	61	22	52	20	3	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65122--65190	27	2.6	27	90	0	102	2	31	39	26	1.71
88816--88867	19	2.7	19	78	0	59	23	15	44	17	1.86
89247--89313	30	2.2	30	89	5	100	29	43	8	17	1.80
89257--89310	23	2.5	22	80	14	58	29	44	7	18	1.77
90801--90881	17	4.9	17	78	6	94	27	25	14	32	1.95
90801--90881	32	2.5	33	81	4	92	27	25	14	32	1.95
90876--90924	25	2.0	25	87	0	71	28	12	12	46	1.77
90943--91060	17	7.2	17	70	14	79	30	27	10	32	1.89
90990--91060	32	2.2	33	82	5	81	32	28	9	29	1.89
91048--91082	13	2.7	13	90	0	61	20	31	17	31	1.95
91189--91227	15	2.6	15	95	0	69	25	28	12	33	1.93
91201--91242	14	2.9	14	86	10	50	23	33	9	33	1.87
91719--91793	21	3.6	21	82	7	82	12	36	32	20	1.89
92413--92473	21	2.9	21	87	0	86	6	16	54	22	1.65
92533--92633	21	4.8	20	72	12	87	5	30	35	27	1.81
92532--92633	42	2.4	42	75	14	111	5	31	35	27	1.81
92719--92787	21	3.3	22	82	12	83	0	47	17	34	1.48
94062--94086	13	1.9	13	100	0	50	20	8	72	0	1.10
94950--95029	13	6.2	13	80	7	92	30	13	31	25	1.94
95116--95169	14	3.9	14	78	4	65	24	18	20	37	1.94
99257--99289	17	1.9	17	93	0	57	12	0	60	27	1.32
100247--100343	12	7.8	12	71	18	56	0	44	1	54	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100235--100346	45	2.5	44	78	17	117	0	42	0	55	1.12
100249--100304	18	3.1	18	97	0	103	0	42	0	57	0.99
100235--100352	30	4.0	30	73	11	95	0	42	0	55	1.11
100307--100347	18	2.2	19	86	4	57	0	41	2	56	1.13
100295--100328	12	2.8	12	95	0	59	0	47	2	50	1.16
114324--114358	14	2.5	14	100	0	70	5	17	45	31	1.71
117623--117657	18	1.9	18	94	0	61	5	31	45	17	1.71
126031--126059	3	9.7	3	100	0	58	31	34	34	0	1.58
145863--145911	21	2.3	21	78	0	53	46	14	36	2	1.56
145878--145907	12	2.5	12	94	0	51	50	20	30	0	1.49
158136--158182	12	3.9	12	91	0	76	38	17	38	6	1.75
166144--166189	21	2.2	21	88	0	65	15	36	23	23	1.93
166321--166351	9	3.4	9	95	0	53	16	32	29	22	1.95
166321--166379	18	3.1	18	75	13	55	18	42	23	15	1.88
166335--166378	21	2.1	21	86	0	61	22	47	20	9	1.78

Tables:   1

The End!