Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold14
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 166576
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Found at i:37 original size:26 final size:26
Alignment explanation
Indices: 1--315 Score: 528
Period size: 26 Copynumber: 12.1 Consensus size: 26
1 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
27 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
53 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
* *
79 CGCAAATGCTGAGAAAAGAATGCTGA-
1 CGCAAATGCTGAGAAAAG-ATTCTAAC
* *
105 -GAAAAGATCCTGAGAAAAGATTCTAAC
1 CG-CAA-ATGCTGAGAAAAGATTCTAAC
132 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
158 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
184 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
210 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
236 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
262 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
*
288 CGC-AATGCTGAGAAAAGATACATAAC
1 CGCAAATGCTGAGAAAAGATTC-TAAC
314 CG
1 CG
316 AGATCAACAA
Statistics
Matches: 274, Mismatches: 9, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
25 18 0.07
26 236 0.86
27 19 0.07
28 1 0.00
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.18
Consensus pattern (26 bp):
CGCAAATGCTGAGAAAAGATTCTAAC
Left flanking sequence: None
Right flanking sequence: Indices 316 -- 815
AGATCAACAACCTCCAACGTTCATAACCAAAGTTTGCCCAACGAAACATCGAAGCGCAAGTGGTT
TAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCTGGTTCGATTCCGGGCTTGCGCATTCTTT
TTGCTGGTCGTGGCCATCTTGGACGATGGACAAGAGTGAGTTCATTATATTTTTGCATGGTATTC
TAATGTGGCTAGATTGCACCACTAGTGCAAGATAAGAAACGACAATACGCATTTTATCAAGAGAA
GGAAAAACAGGAAGCAAGCAAGGACGCGAGTCCAAAAATGGAAAAATAAAAAATAATGGACGAGT
TGGGAATCGAACCCAAGACCTTTCGCATGCTAAGCGAACGCTCTACCAACTGAGCTACACGCCCG
ATATAAAATTTTGTGAAAATAGACGTACTATGTTGTGTACTGAAAAAAGATGTGATTTAGGGGGC
AGGGTATGTGATTTGTCGAGCTCTTAAAAAAATTGGACTCATACC
Found at i:102 original size:14 final size:14
Alignment explanation
Indices: 83--124 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
73 TCTAACCGCA
83 AATGCTGAGAAAAG
1 AATGCTGAGAAAAG
97 AATGCTGAGAAAAG
1 AATGCTGAGAAAAG
*
111 -ATCCTGAGAAAAG
1 AATGCTGAGAAAAG
124 A
1 A
125 TTCTAACCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.50, C:0.10, G:0.26, T:0.14
Consensus pattern (14 bp):
AATGCTGAGAAAAG
Left flanking sequence: Indices 1 -- 82
CGCAAATGCTGAGAAAAGATTCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAAATGCTGAG
AAAAGATTCTAACCGCA
Right flanking sequence: Indices 125 -- 624
TTCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAAA
TGCTGAGAAAAGATTCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAAATGCTGAGAAAAGA
TTCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAATGCTGAGAAAAGATACATAACCGAGAT
CAACAACCTCCAACGTTCATAACCAAAGTTTGCCCAACGAAACATCGAAGCGCAAGTGGTTTAGT
GGTAAAATCCAACGTTGCCATCGTTGGGCCCCTGGTTCGATTCCGGGCTTGCGCATTCTTTTTGC
TGGTCGTGGCCATCTTGGACGATGGACAAGAGTGAGTTCATTATATTTTTGCATGGTATTCTAAT
GTGGCTAGATTGCACCACTAGTGCAAGATAAGAAACGACAATACGCATTTTATCAAGAGAAGGAA
AAACAGGAAGCAAGCAAGGACGCGAGTCCAAAAATGGAAAAATAA
Found at i:119 original size:13 final size:13
Alignment explanation
Indices: 87--125 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
77 ACCGCAAATG
*
87 CTGAGAAAAGAATG
1 CTGAGAAAAG-ATC
101 CTGAGAAAAGATC
1 CTGAGAAAAGATC
114 CTGAGAAAAGAT
1 CTGAGAAAAGAT
126 TCTAACCGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.49, C:0.10, G:0.26, T:0.15
Consensus pattern (13 bp):
CTGAGAAAAGATC
Left flanking sequence: Indices 1 -- 86
CGCAAATGCTGAGAAAAGATTCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAAATGCTGAG
AAAAGATTCTAACCGCAAATG
Right flanking sequence: Indices 126 -- 625
TCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAAAT
GCTGAGAAAAGATTCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAAATGCTGAGAAAAGAT
TCTAACCGCAAATGCTGAGAAAAGATTCTAACCGCAATGCTGAGAAAAGATACATAACCGAGATC
AACAACCTCCAACGTTCATAACCAAAGTTTGCCCAACGAAACATCGAAGCGCAAGTGGTTTAGTG
GTAAAATCCAACGTTGCCATCGTTGGGCCCCTGGTTCGATTCCGGGCTTGCGCATTCTTTTTGCT
GGTCGTGGCCATCTTGGACGATGGACAAGAGTGAGTTCATTATATTTTTGCATGGTATTCTAATG
TGGCTAGATTGCACCACTAGTGCAAGATAAGAAACGACAATACGCATTTTATCAAGAGAAGGAAA
AACAGGAAGCAAGCAAGGACGCGAGTCCAAAAATGGAAAAATAAA
Found at i:5479 original size:21 final size:21
Alignment explanation
Indices: 5453--5505 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
5443 CAGTGGGTTC
5453 GGGCTGGTCAGAGGTAGGCTG
1 GGGCTGGTCAGAGGTAGGCTG
* *
5474 GGGCTGGTCAGAGGTGGGTTG
1 GGGCTGGTCAGAGGTAGGCTG
*
5495 AGGCTGGTCAG
1 GGGCTGGTCAG
5506 TGTTGTCATC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.13, C:0.13, G:0.53, T:0.21
Consensus pattern (21 bp):
GGGCTGGTCAGAGGTAGGCTG
Left flanking sequence: Indices 4953 -- 5452
GCGTGGTCGATACCACCAAACAAGATGTTACCGTTCTTGGCGGCAGCCAGGTTAAGGTACAACGA
GAAGGCAGCCTTGGCAATCTTGCCCTGAGACTTAAGAGCCCAAGGCAAGTTGTCGTACTTCTTGG
AGGTCTGCTGGAGGTCCTTCTTACCAACACCAATCAACAGGTCGTCAGTCTTCTCGGTCTCAACC
GAGCCAAACTGGAAGTTGTCAATCTGAACATTGCCAAGGTCAATGGTGTCGTAGGCCCAAACACC
CAGCGCGGAACCCAGCGAACCCTGGTAGGAAATTTGGAACTGGTCAGTGGTTACACGGCCAGAAG
AAGAGTCAGCAGGGTTGTACACCAGCTTCTTGACCCACATGTCCAGGGAACCGGTGTCAATAAGA
CCCTTAAAGGGGGCCTTCTGCGAACCGCCCTTGACGTTCATGTAGTAGATACCCTGGAGGTTCAT
CTCGAGCTCCTCCTGGAAGCTGTGGCCGTTGGAGCCAGTGGGTTC
Right flanking sequence: Indices 5506 -- 6005
TGTTGTCATCGGTGGGCTGAGGCTGGTCAGAGGTAGGCTGGGGCTGCTCAGTGTTGTCGTCAGTG
GGCTGGGGCTGCTCAGTGTGGTCGTCAGTGGGCTGAGGGTATCCAGTGGGCTCATTAGTGGGCTC
AGGGTGAGGAGGAGCGGTAGGCTGAGGACGAGTGGGCCTAGTAGGGCGGTTTCTGATGGGGGCGA
TCCAACCAAACAACAAGTTCCACACGTTAGTGACAAGGCCGCCGTTGCCGAAGAGAAGACCACGC
TTGACCCCCACGGCGATCACCTCCTCCTGCTCAAGCAATGGCTCGTCACGCTTCTGAAAATCCGA
CTTGATGTCAACCTCAAAGGCAATCACCAAGGGAGCGGGAATGGACTGGTTCTGCGCCCGCGGGA
TAACATGAGCGGCGATGAACGTGACGAAGAACGCCAACAACAAGAACTTCATGTTTAGGGCTCGA
ACATGGGTCCGGTCGCCTATTTATTTGCCAACTGCACCTCCAAAA
Found at i:5551 original size:51 final size:51
Alignment explanation
Indices: 5469--5586 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
5459 GTCAGAGGTA
* * * *
5469 GGCTGGGGCTGGTCAGAGGTGGGTTGAGGCTGGTCAGTGTTGTCATCGGTG
1 GGCTGGGGCTGGTCAGAGGTAGGCTGAGGCTGCTCAGTGTTGTCATCAGTG
* * *
5520 GGCTGAGGCTGGTCAGAGGTAGGCTGGGGCTGCTCAGTGTTGTCGTCAGTG
1 GGCTGGGGCTGGTCAGAGGTAGGCTGAGGCTGCTCAGTGTTGTCATCAGTG
*
5571 GGCTGGGGCTGCTCAG
1 GGCTGGGGCTGGTCAG
5587 TGTGGTCGTC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.10, C:0.17, G:0.47, T:0.25
Consensus pattern (51 bp):
GGCTGGGGCTGGTCAGAGGTAGGCTGAGGCTGCTCAGTGTTGTCATCAGTG
Left flanking sequence: Indices 4969 -- 5468
CAAACAAGATGTTACCGTTCTTGGCGGCAGCCAGGTTAAGGTACAACGAGAAGGCAGCCTTGGCA
ATCTTGCCCTGAGACTTAAGAGCCCAAGGCAAGTTGTCGTACTTCTTGGAGGTCTGCTGGAGGTC
CTTCTTACCAACACCAATCAACAGGTCGTCAGTCTTCTCGGTCTCAACCGAGCCAAACTGGAAGT
TGTCAATCTGAACATTGCCAAGGTCAATGGTGTCGTAGGCCCAAACACCCAGCGCGGAACCCAGC
GAACCCTGGTAGGAAATTTGGAACTGGTCAGTGGTTACACGGCCAGAAGAAGAGTCAGCAGGGTT
GTACACCAGCTTCTTGACCCACATGTCCAGGGAACCGGTGTCAATAAGACCCTTAAAGGGGGCCT
TCTGCGAACCGCCCTTGACGTTCATGTAGTAGATACCCTGGAGGTTCATCTCGAGCTCCTCCTGG
AAGCTGTGGCCGTTGGAGCCAGTGGGTTCGGGCTGGTCAGAGGTA
Right flanking sequence: Indices 5587 -- 6086
TGTGGTCGTCAGTGGGCTGAGGGTATCCAGTGGGCTCATTAGTGGGCTCAGGGTGAGGAGGAGCG
GTAGGCTGAGGACGAGTGGGCCTAGTAGGGCGGTTTCTGATGGGGGCGATCCAACCAAACAACAA
GTTCCACACGTTAGTGACAAGGCCGCCGTTGCCGAAGAGAAGACCACGCTTGACCCCCACGGCGA
TCACCTCCTCCTGCTCAAGCAATGGCTCGTCACGCTTCTGAAAATCCGACTTGATGTCAACCTCA
AAGGCAATCACCAAGGGAGCGGGAATGGACTGGTTCTGCGCCCGCGGGATAACATGAGCGGCGAT
GAACGTGACGAAGAACGCCAACAACAAGAACTTCATGTTTAGGGCTCGAACATGGGTCCGGTCGC
CTATTTATTTGCCAACTGCACCTCCAAAAAATATCGAAACAATAAACACAGGGTATCGCGACAGT
TTCAACGATAAACGGGGGAAAATGGAGGCGAAATTTGAAGTGATT
Found at i:5576 original size:30 final size:30
Alignment explanation
Indices: 5541--5605 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
5531 GTCAGAGGTA
*
5541 GGCTGGGGCTGCTCAGTGTTGTCGTCAGTG
1 GGCTGGGGCTGCTCAGTGTGGTCGTCAGTG
5571 GGCTGGGGCTGCTCAGTGTGGTCGTCAGTG
1 GGCTGGGGCTGCTCAGTGTGGTCGTCAGTG
5601 GGCTG
1 GGCTG
5606 AGGGTATCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.06, C:0.20, G:0.46, T:0.28
Consensus pattern (30 bp):
GGCTGGGGCTGCTCAGTGTGGTCGTCAGTG
Left flanking sequence: Indices 5041 -- 5540
CCTGAGACTTAAGAGCCCAAGGCAAGTTGTCGTACTTCTTGGAGGTCTGCTGGAGGTCCTTCTTA
CCAACACCAATCAACAGGTCGTCAGTCTTCTCGGTCTCAACCGAGCCAAACTGGAAGTTGTCAAT
CTGAACATTGCCAAGGTCAATGGTGTCGTAGGCCCAAACACCCAGCGCGGAACCCAGCGAACCCT
GGTAGGAAATTTGGAACTGGTCAGTGGTTACACGGCCAGAAGAAGAGTCAGCAGGGTTGTACACC
AGCTTCTTGACCCACATGTCCAGGGAACCGGTGTCAATAAGACCCTTAAAGGGGGCCTTCTGCGA
ACCGCCCTTGACGTTCATGTAGTAGATACCCTGGAGGTTCATCTCGAGCTCCTCCTGGAAGCTGT
GGCCGTTGGAGCCAGTGGGTTCGGGCTGGTCAGAGGTAGGCTGGGGCTGGTCAGAGGTGGGTTGA
GGCTGGTCAGTGTTGTCATCGGTGGGCTGAGGCTGGTCAGAGGTA
Right flanking sequence: Indices 5606 -- 6105
AGGGTATCCAGTGGGCTCATTAGTGGGCTCAGGGTGAGGAGGAGCGGTAGGCTGAGGACGAGTGG
GCCTAGTAGGGCGGTTTCTGATGGGGGCGATCCAACCAAACAACAAGTTCCACACGTTAGTGACA
AGGCCGCCGTTGCCGAAGAGAAGACCACGCTTGACCCCCACGGCGATCACCTCCTCCTGCTCAAG
CAATGGCTCGTCACGCTTCTGAAAATCCGACTTGATGTCAACCTCAAAGGCAATCACCAAGGGAG
CGGGAATGGACTGGTTCTGCGCCCGCGGGATAACATGAGCGGCGATGAACGTGACGAAGAACGCC
AACAACAAGAACTTCATGTTTAGGGCTCGAACATGGGTCCGGTCGCCTATTTATTTGCCAACTGC
ACCTCCAAAAAATATCGAAACAATAAACACAGGGTATCGCGACAGTTTCAACGATAAACGGGGGA
AAATGGAGGCGAAATTTGAAGTGATTTCGCGACTCCGCATACCAG
Found at i:17767 original size:14 final size:13
Alignment explanation
Indices: 17750--17844 Score: 82
Period size: 15 Copynumber: 6.5 Consensus size: 13
17740 AAGGCAGGCA
17750 GCCAACAGGACAG
1 GCCAACAGGACAG
17763 CGCCAACAGGACACG
1 -GCCAACAGGACA-G
*
17778 GCCAACAAGAAACAAG
1 GCCAAC-AG-GAC-AG
17794 GCCAACAGGAACAG
1 GCCAACAGG-ACAG
17808 GCCAACAAGGAACAG
1 GCCAAC-AGG-ACAG
*
17823 GCCAACAAGGACTGG
1 GCCAAC-AGGAC-AG
17838 GCCAACA
1 GCCAACA
17845 ATTAGATTTT
Statistics
Matches: 71, Mismatches: 3, Indels: 14
0.81 0.03 0.16
Matches are distributed among these distances:
14 29 0.41
15 32 0.45
16 9 0.13
17 1 0.01
ACGTcount: A:0.42, C:0.31, G:0.26, T:0.01
Consensus pattern (13 bp):
GCCAACAGGACAG
Left flanking sequence: Indices 17250 -- 17749
GATTGGCCTTTGACGCAAGGCTTGCGGCCATGTTGGCACCGGGACCGGCTCTGCTCGCGCTCAGC
TGAGCCACCGTGCGTGGCGGTGCAAGCGTCTGCACTTTTGTGGGCTGGGTGGGCCGGGAGGTGGA
CCCCGGTCGAGCTGTGCGAACCGCATCTCCGGGGGGACGGGAAGGACCACCAGCGGCTCCCGTGG
ACACATTGGGCTGCTGGCTACGCAGCGACACCCCTCCGCGAGCTCCAGAGGCCACCCCCACCGCG
GCAGCAGAGGGCGGCCGGCGCCCCCGCAAGTGGTCGTTGACCATCTGATGGGCTGCGTTCACCTC
CAGGGACGGCACCACCCGCAGGGGCAGTGGCTGCAGCGCGTCTTGATCGGAACTCTTCATCAACG
CTCGGGTGTGGTCGCGGGTGTAGCTCAGGTAAACGAGGTGTGTGGTTTGGTGAGGCGATTTTTGT
CGCGCCGGATCGGTGATCTGGTAGGGAGGCCAACAAAGGCAGGCA
Right flanking sequence: Indices 17845 -- 18344
ATTAGATTTTGGAGAAGCAGTAGTGTGACAGAACGTAGACTCGTGCCGGTGTCCGGTTGATCTTG
TGCTACGAGCCGAGCTGATGACGTTCGCTCAGATTATGTGACAAAATCGTCTACGGGGTTATCGT
TGTGTGGTGGTGCTGTGCTCATAATGTACTGGCGCTGCGGTTGTTGGCCGGTAAACGAGTGGATT
GAATCATAGTGCCTCGACCGCGAATCGTATGACCCGCTCGGCTTGTTGAATTTTCGCAGACAGTT
GCCGTGGGCATTGTCTCAACAATGGTATTTATTAGCTATATAATGCCCGGACGGGTAATCTGGCT
GGCTCGCAGCACCACCTCGGCGGGTTTCTCGCCACTAAACACTTTGGTAACCGTGTCGATCCCCA
GCCACTCCCGCGCCAACTCCACCACCGGCCACGGAAGGGCTCGAAACAACGGAATCACATGGGCG
TAGGCGGGCATCACAAGCTCTCCTTGGCGTCCGTGGCGTAGCGCC
Found at i:17800 original size:30 final size:29
Alignment explanation
Indices: 17759--17845 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 29
17749 AGCCAACAGG
17759 ACAGCGCCAACAGGACACGGCCAACAAGAA
1 ACAG-GCCAACAGGACACGGCCAACAAGAA
*
17789 ACAAGGCCAACAGGA-ACAGGCCAACAAGGA
1 AC-AGGCCAACAGGACAC-GGCCAACAAGAA
**
17819 ACAGGCCAACAAGGACTGGGCCAACAA
1 ACAGGCCAAC-AGGACACGGCCAACAA
17846 TTAGATTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
29 10 0.20
30 38 0.76
31 2 0.04
ACGTcount: A:0.44, C:0.30, G:0.25, T:0.01
Consensus pattern (29 bp):
ACAGGCCAACAGGACACGGCCAACAAGAA
Left flanking sequence: Indices 17259 -- 17758
TTGACGCAAGGCTTGCGGCCATGTTGGCACCGGGACCGGCTCTGCTCGCGCTCAGCTGAGCCACC
GTGCGTGGCGGTGCAAGCGTCTGCACTTTTGTGGGCTGGGTGGGCCGGGAGGTGGACCCCGGTCG
AGCTGTGCGAACCGCATCTCCGGGGGGACGGGAAGGACCACCAGCGGCTCCCGTGGACACATTGG
GCTGCTGGCTACGCAGCGACACCCCTCCGCGAGCTCCAGAGGCCACCCCCACCGCGGCAGCAGAG
GGCGGCCGGCGCCCCCGCAAGTGGTCGTTGACCATCTGATGGGCTGCGTTCACCTCCAGGGACGG
CACCACCCGCAGGGGCAGTGGCTGCAGCGCGTCTTGATCGGAACTCTTCATCAACGCTCGGGTGT
GGTCGCGGGTGTAGCTCAGGTAAACGAGGTGTGTGGTTTGGTGAGGCGATTTTTGTCGCGCCGGA
TCGGTGATCTGGTAGGGAGGCCAACAAAGGCAGGCAGCCAACAGG
Right flanking sequence: Indices 17846 -- 18345
TTAGATTTTGGAGAAGCAGTAGTGTGACAGAACGTAGACTCGTGCCGGTGTCCGGTTGATCTTGT
GCTACGAGCCGAGCTGATGACGTTCGCTCAGATTATGTGACAAAATCGTCTACGGGGTTATCGTT
GTGTGGTGGTGCTGTGCTCATAATGTACTGGCGCTGCGGTTGTTGGCCGGTAAACGAGTGGATTG
AATCATAGTGCCTCGACCGCGAATCGTATGACCCGCTCGGCTTGTTGAATTTTCGCAGACAGTTG
CCGTGGGCATTGTCTCAACAATGGTATTTATTAGCTATATAATGCCCGGACGGGTAATCTGGCTG
GCTCGCAGCACCACCTCGGCGGGTTTCTCGCCACTAAACACTTTGGTAACCGTGTCGATCCCCAG
CCACTCCCGCGCCAACTCCACCACCGGCCACGGAAGGGCTCGAAACAACGGAATCACATGGGCGT
AGGCGGGCATCACAAGCTCTCCTTGGCGTCCGTGGCGTAGCGCCC
Found at i:17833 original size:15 final size:14
Alignment explanation
Indices: 17750--17829 Score: 92
Period size: 14 Copynumber: 5.5 Consensus size: 14
17740 AAGGCAGGCA
17750 GCCAACAGG-ACAG
1 GCCAACAGGAACAG
17763 CGCCAACAGG-ACACG
1 -GCCAACAGGAACA-G
*
17778 GCCAACAAGAAACAAG
1 GCCAAC-AGGAAC-AG
17794 GCCAACAGGAACAG
1 GCCAACAGGAACAG
17808 GCCAACAAGGAACAG
1 GCCAAC-AGGAACAG
17823 GCCAACA
1 GCCAACA
17830 AGGACTGGGC
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
14 27 0.46
15 22 0.37
16 9 0.15
17 1 0.02
ACGTcount: A:0.44, C:0.31, G:0.25, T:0.00
Consensus pattern (14 bp):
GCCAACAGGAACAG
Left flanking sequence: Indices 17250 -- 17749
GATTGGCCTTTGACGCAAGGCTTGCGGCCATGTTGGCACCGGGACCGGCTCTGCTCGCGCTCAGC
TGAGCCACCGTGCGTGGCGGTGCAAGCGTCTGCACTTTTGTGGGCTGGGTGGGCCGGGAGGTGGA
CCCCGGTCGAGCTGTGCGAACCGCATCTCCGGGGGGACGGGAAGGACCACCAGCGGCTCCCGTGG
ACACATTGGGCTGCTGGCTACGCAGCGACACCCCTCCGCGAGCTCCAGAGGCCACCCCCACCGCG
GCAGCAGAGGGCGGCCGGCGCCCCCGCAAGTGGTCGTTGACCATCTGATGGGCTGCGTTCACCTC
CAGGGACGGCACCACCCGCAGGGGCAGTGGCTGCAGCGCGTCTTGATCGGAACTCTTCATCAACG
CTCGGGTGTGGTCGCGGGTGTAGCTCAGGTAAACGAGGTGTGTGGTTTGGTGAGGCGATTTTTGT
CGCGCCGGATCGGTGATCTGGTAGGGAGGCCAACAAAGGCAGGCA
Right flanking sequence: Indices 17830 -- 18329
AGGACTGGGCCAACAATTAGATTTTGGAGAAGCAGTAGTGTGACAGAACGTAGACTCGTGCCGGT
GTCCGGTTGATCTTGTGCTACGAGCCGAGCTGATGACGTTCGCTCAGATTATGTGACAAAATCGT
CTACGGGGTTATCGTTGTGTGGTGGTGCTGTGCTCATAATGTACTGGCGCTGCGGTTGTTGGCCG
GTAAACGAGTGGATTGAATCATAGTGCCTCGACCGCGAATCGTATGACCCGCTCGGCTTGTTGAA
TTTTCGCAGACAGTTGCCGTGGGCATTGTCTCAACAATGGTATTTATTAGCTATATAATGCCCGG
ACGGGTAATCTGGCTGGCTCGCAGCACCACCTCGGCGGGTTTCTCGCCACTAAACACTTTGGTAA
CCGTGTCGATCCCCAGCCACTCCCGCGCCAACTCCACCACCGGCCACGGAAGGGCTCGAAACAAC
GGAATCACATGGGCGTAGGCGGGCATCACAAGCTCTCCTTGGCGT
Found at i:17845 original size:15 final size:15
Alignment explanation
Indices: 17750--17833 Score: 97
Period size: 15 Copynumber: 5.7 Consensus size: 15
17740 AAGGCAGGCA
17750 GCCAAC-AGG-ACAG
1 GCCAACAAGGAACAG
17763 CGCCAAC-AGG-ACACG
1 -GCCAACAAGGAACA-G
*
17778 GCCAACAAGAAACAAG
1 GCCAACAAGGAAC-AG
17794 GCCAAC-AGGAACAG
1 GCCAACAAGGAACAG
17808 GCCAACAAGGAACAG
1 GCCAACAAGGAACAG
17823 GCCAACAAGGA
1 GCCAACAAGGA
17834 CTGGGCCAAC
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
14 26 0.41
15 27 0.43
16 9 0.14
17 1 0.02
ACGTcount: A:0.44, C:0.30, G:0.26, T:0.00
Consensus pattern (15 bp):
GCCAACAAGGAACAG
Left flanking sequence: Indices 17250 -- 17749
GATTGGCCTTTGACGCAAGGCTTGCGGCCATGTTGGCACCGGGACCGGCTCTGCTCGCGCTCAGC
TGAGCCACCGTGCGTGGCGGTGCAAGCGTCTGCACTTTTGTGGGCTGGGTGGGCCGGGAGGTGGA
CCCCGGTCGAGCTGTGCGAACCGCATCTCCGGGGGGACGGGAAGGACCACCAGCGGCTCCCGTGG
ACACATTGGGCTGCTGGCTACGCAGCGACACCCCTCCGCGAGCTCCAGAGGCCACCCCCACCGCG
GCAGCAGAGGGCGGCCGGCGCCCCCGCAAGTGGTCGTTGACCATCTGATGGGCTGCGTTCACCTC
CAGGGACGGCACCACCCGCAGGGGCAGTGGCTGCAGCGCGTCTTGATCGGAACTCTTCATCAACG
CTCGGGTGTGGTCGCGGGTGTAGCTCAGGTAAACGAGGTGTGTGGTTTGGTGAGGCGATTTTTGT
CGCGCCGGATCGGTGATCTGGTAGGGAGGCCAACAAAGGCAGGCA
Right flanking sequence: Indices 17834 -- 18333
CTGGGCCAACAATTAGATTTTGGAGAAGCAGTAGTGTGACAGAACGTAGACTCGTGCCGGTGTCC
GGTTGATCTTGTGCTACGAGCCGAGCTGATGACGTTCGCTCAGATTATGTGACAAAATCGTCTAC
GGGGTTATCGTTGTGTGGTGGTGCTGTGCTCATAATGTACTGGCGCTGCGGTTGTTGGCCGGTAA
ACGAGTGGATTGAATCATAGTGCCTCGACCGCGAATCGTATGACCCGCTCGGCTTGTTGAATTTT
CGCAGACAGTTGCCGTGGGCATTGTCTCAACAATGGTATTTATTAGCTATATAATGCCCGGACGG
GTAATCTGGCTGGCTCGCAGCACCACCTCGGCGGGTTTCTCGCCACTAAACACTTTGGTAACCGT
GTCGATCCCCAGCCACTCCCGCGCCAACTCCACCACCGGCCACGGAAGGGCTCGAAACAACGGAA
TCACATGGGCGTAGGCGGGCATCACAAGCTCTCCTTGGCGTCCGT
Found at i:19804 original size:12 final size:12
Alignment explanation
Indices: 19787--19811 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19777 GAGTACCTAC
19787 TTTGCCGACAAG
1 TTTGCCGACAAG
19799 TTTGCCGACAAG
1 TTTGCCGACAAG
19811 T
1 T
19812 GGCGTGACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (12 bp):
TTTGCCGACAAG
Left flanking sequence: Indices 19287 -- 19786
CGATGAACTACACAGACATGCCGCTGGCCCAGGCCGTGGCCGATGCTAGCACCACCAAGGCATTT
GAGGATCTCTGTGCCGCGTGTCGTCGGGGCGACGTCGACGAGGTCGAGGCGCTTTTGTCGACCGC
GGGGCTCGACATCAACCAGGTGGACGAGTGGGACTACCTGCCGTTGATCTTGCTGTCGTTGTGTG
GCCACTTACCGGTAGTGGAATTACTCCTCCTGCGGGGGGCTGTATGCGACCGTGACACATTCCAG
GGAGCCCGGTGCATATATGGGGCACTCACGGACACCATCCGCGACTTGTTGCTTAGTTATGACAT
CAGCAAAACGGTTGAGGTCACCCAGCCGTTTGCGGGGTACATTGCTCTGTTGTACACCCCGCTTG
GCCCGATCAAGGACGTGTGTTTCCACTTCCGCCAGGTGCACGGGGCGATGGTGCGGGACTACCAG
GCGATACGCTGTCACCGGTTCTTGTTGGCGGCCCGGAGTACCTAC
Right flanking sequence: Indices 19812 -- 20311
GGCGTGACAAAGTTGTTATTGACATGCCCACCTCGACAGATCCGGTGCTTTTCCGCCAGGTGGTA
GACTACATCTATTTACGAGGCGTGGAAGCCACCCCGGAGTTGCGCCCCTATGCGGCCAAACTCGC
TCTCAACGAGCTCGTGGAGATGTTAGACGCGTTAAAGCCCATGGAAAGCCGGCGGGACCAGGCCA
AGGTAAAGCTGAACTACGACTTGCAGTTTCCGAACACCGCTCGCTCCCAGCTTAAGCGATACTTG
GCAGCGATTATCGCGGCCAAAGTCGAGGTGCCCATCGATATGGACTCGTTTGAGGGTGAGGTGGA
CGTCAGCGACATCGACGTGGCCAAGATCCTCCCAGAGGAGAACGTCAAGTCGCTCGTCCGGCTGT
CACCGTGTGACATCATTGTGGGCATTGTTGATACCGAAAAGGAGGTTGCGGTGTATTATCCCGTG
CACAAGGCCATGTTGGCACGCAGTGGCTACTTTGACACCATGTTT
Found at i:21299 original size:24 final size:24
Alignment explanation
Indices: 21249--21299 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
21239 GGGTTTGGAT
* * *
21249 GTGGTAGTATGGGTTGGCTTGGCC
1 GTGGTAGTAGGGGTTGGCTTAGAC
21273 GTGGTAGT-GGGGTTCGGCTTAGAC
1 GTGGTAGTAGGGGTT-GGCTTAGAC
21297 GTG
1 GTG
21300 ATGGTAGGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.10, C:0.12, G:0.47, T:0.31
Consensus pattern (24 bp):
GTGGTAGTAGGGGTTGGCTTAGAC
Left flanking sequence: Indices 20749 -- 21248
CTGTCGCGACGAAGTGCTTTCGGTAATCAGCGAAAGTGCCGGCCGCATCAAGGCGCGTCAGGAAA
CAGATACCATCGAAGTGGTTGACGATATCCGATATTATTTGAGCCGCAAGTACGTGGTGGACGAC
AAGGCATACGACGAGGTCGCTATCGGCATGCTAGCGGGGACTCAGCTTGAGGACACTGATCTCAT
GAAAAAGGCGACGGCTCGATACCACCACGATTTGGCAATCATTGATGGTTGGTTAGACGAGCTTG
GATTAGAAGCGTAATCACATTTATAGACTCAAAATACACAATTATGTAAAGTCCCACCACTTCCC
GAGAAACCATTTTATCCATGCTTCACCGGCGGCTTTGTCGTTAGCGTCCATAACATAGGGCGCAA
CAGTCTTAATCGTGGCCTGTTTACCGTTAATAACAGTCACGATAGTTGTGGGACCTATCAAGGTG
ACGAAAACTTTGGGCTTACCCGTAGTGGTGGGTTGGGGTTTGGAT
Right flanking sequence: Indices 21300 -- 21799
ATGGTAGGAGTTGACTTGGTAGTTGTGGTGGTCAGCTTGACTGTGGTTGTGGGGGCAGTAGTGGG
TGTAGTGGTAGGCTTAGCACTGGTGGAAGTTGAAGGAGGTTTCACGGGGGTCGGGGTCTCCAGCT
CAGTGGGAACAGGCGTGGGGGAAGGCTCCGGAATTGTTGGCTTGAAAGACGTCGTCGAAATAGGT
GACGGGGTTGTAGAGGTTGTAGTCATCGATGATGTCGTAGGCTTAGGAGAAGAAGTCGTAGTCTG
AACCGGGGTTGGAGATGTCGTAGGCTCTCGCGAGGTGGTAGGCTCTGCGAAAGTAGTAGTGGTAG
TCGTAGTTGGGGCAGGAACAGTTGGTATGGTAGAAGCCAGAGTGGTGGGCAGAGGTGTTGTCTTG
GAGGGTATACTTGAGGTTGACAGACTCTGCTTGGTAGTAGATTCCTCATGGGTAGGTTTCAGCCT
TTTGAAAGCGACGCTCTTCCCTTTCTGGGTGACTTCACCATGAAC
Found at i:31515 original size:30 final size:30
Alignment explanation
Indices: 31469--31555 Score: 129
Period size: 30 Copynumber: 2.9 Consensus size: 30
31459 TCAGTGGAGC
*
31469 TTTCGTTCGGTGGAGACTGAGGTTCCAAGG
1 TTTCGTTCGATGGAGACTGAGGTTCCAAGG
* *
31499 TTTTGTTTGATGGAGACTGAGGTTCCAAGG
1 TTTCGTTCGATGGAGACTGAGGTTCCAAGG
* *
31529 TTTCGTTCGGTGGAGACTGTGGTTCCA
1 TTTCGTTCGATGGAGACTGAGGTTCCA
31556 TATTTGATTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.16, C:0.15, G:0.34, T:0.34
Consensus pattern (30 bp):
TTTCGTTCGATGGAGACTGAGGTTCCAAGG
Left flanking sequence: Indices 30969 -- 31468
TTAGAATTACTATTCACGAATAAATCACTGGTAGGATCAAATGAGCAAATCGGCAATGTTTGAAA
TGGTTTCTTCGTATTGGCGCTCAGTACGGTATTTGACCTTCTGGGCAATCGTGGACTGCCAATCA
TCGCAAATCCCTTGTCGTACATCGTTGTCGGGCTCATACCTGAGCTGTTTATGGTAGTCTTTACT
AAGTCGGTTGCATTCGGTTCCTTTGGGGTAGGCGGACTTGGGAGGTGGCAATTTCTTTTCGCGCC
CATTAACCATGGTTACGATATGTGTTGGAGGGTTTGGGTAGCTGAAGATGTGACAAAACGCTTTC
AAAACTTTCATCCGCTTATTGTACGGCAAGCCACACAAACGCTGGGTAAACTCATTGAATACTTC
AACAAATGCATCTCTCTGGGCCTCGGCTGACTGCGTCGTGTCTGGTGTTTCGCAGGAAGAATGAG
TAGATGTTGTTGGCGTGGAGATGAATGAGTGGGAATCAGTGGAGC
Right flanking sequence: Indices 31556 -- 32055
TATTTGATTAGTTGGGTGCGAGACTGGCTGTTAAGCATCGTAGTCCTCAAACGTTACCCCCAAGC
GATACGCGCTCCTTCCTTATAGTCTGTTCTGTAGCTCCTTAGACGTTGTGCATGACCTCATCCCA
GATGTGCCCAGATGTAAAGCGATGTAATGGAAGTCGGCTGGAATAGTGGCATTGTTTCTAAAAGC
TTAATCCTGTAGAAACGTTCGGATCTGCTCTTCAGAAATACACCTTGTTTCTACTGGAAGAGCCA
GCTAGGAAGAGCCAGCTCTACCACATGCTTTAAATTGACAGAAGCGTGTCTTGTTCTGGAGTCAA
TACTCCTATGCCGATTCCTTTCGAATCTACCTTGTACGTTGTTTGGGAGACAATGGGGCGAAAAC
CGCCGTCACCTCGCTTAATTGACCTTGGCTAAGGAGTGGATATTTAGACAATGATAGTTAAACTG
ACAATTGAAAATCTTCAAGTAAACACCCATCTGCTTAAGACCCTC
Found at i:31825 original size:14 final size:14
Alignment explanation
Indices: 31806--31832 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31796 TGTTTCTACT
31806 GGAAGAGCCAGCTA
1 GGAAGAGCCAGCTA
31820 GGAAGAGCCAGCT
1 GGAAGAGCCAGCT
31833 CTACCACATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.37, T:0.07
Consensus pattern (14 bp):
GGAAGAGCCAGCTA
Left flanking sequence: Indices 31306 -- 31805
CGCTTATTGTACGGCAAGCCACACAAACGCTGGGTAAACTCATTGAATACTTCAACAAATGCATC
TCTCTGGGCCTCGGCTGACTGCGTCGTGTCTGGTGTTTCGCAGGAAGAATGAGTAGATGTTGTTG
GCGTGGAGATGAATGAGTGGGAATCAGTGGAGCTTTCGTTCGGTGGAGACTGAGGTTCCAAGGTT
TTGTTTGATGGAGACTGAGGTTCCAAGGTTTCGTTCGGTGGAGACTGTGGTTCCATATTTGATTA
GTTGGGTGCGAGACTGGCTGTTAAGCATCGTAGTCCTCAAACGTTACCCCCAAGCGATACGCGCT
CCTTCCTTATAGTCTGTTCTGTAGCTCCTTAGACGTTGTGCATGACCTCATCCCAGATGTGCCCA
GATGTAAAGCGATGTAATGGAAGTCGGCTGGAATAGTGGCATTGTTTCTAAAAGCTTAATCCTGT
AGAAACGTTCGGATCTGCTCTTCAGAAATACACCTTGTTTCTACT
Right flanking sequence: Indices 31833 -- 32332
CTACCACATGCTTTAAATTGACAGAAGCGTGTCTTGTTCTGGAGTCAATACTCCTATGCCGATTC
CTTTCGAATCTACCTTGTACGTTGTTTGGGAGACAATGGGGCGAAAACCGCCGTCACCTCGCTTA
ATTGACCTTGGCTAAGGAGTGGATATTTAGACAATGATAGTTAAACTGACAATTGAAAATCTTCA
AGTAAACACCCATCTGCTTAAGACCCTCAGTTACTTCTCACCTCCATTTGCACCCATGCACACGA
GCCCCGCCCAAAGATATTTGGGTGCGAAAATCAATTGTTTATACTAGACACTCACTATGGCACCT
AAAAAGCCCCTCACCGGTTTCACCACTCCACTAGGGCTGGGTGCGGGTGTACCACTCGAAAAGAG
ACCCCCCAAGGTCACCGATCTGGAAGCCCGTCTCGCAAAACCGTTCCGGGTACCCTTCAAAGAGA
AAGTCCAAAATGTGACGCGTCGCGGTACCAAACGCGTCAACTACG
Found at i:55538 original size:15 final size:15
Alignment explanation
Indices: 55520--55551 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
55510 GAAAGTGGGA
*
55520 AGAAAGTGGTATTGG
1 AGAAAGCGGTATTGG
55535 AGAAAGCGGTATTGG
1 AGAAAGCGGTATTGG
55550 AG
1 AG
55552 GTTTGGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.41, T:0.22
Consensus pattern (15 bp):
AGAAAGCGGTATTGG
Left flanking sequence: Indices 55020 -- 55519
CGGAACAGCAACGTTACGTAGTCGCCGGACTTGTTCTCAATCTCGAGAGCCAACAACCCAAGCGC
CTGGCAAAACAGCTTCTCGTCAAGAGGTACCAAGTTGTCGTACACCACGTTGGCAAGCTTCGACG
ACTGGTAGCTGGTGATGTAGCCGGCAGCAACAGCCTTGTCAAAAATGTCTGTCTCCAACTGGTGG
AGTGTCAGCACGTCCTTGTGGTGGGACCAGATGTCTTTGTACTGGTCAGGGAACGAGTCGCCACC
TCCGGACGGGGCCAACAATTGCAGGGCAGTGAACCCCGAATTGTAGCCGTACATCGATGCCAGGG
GATTGGAGGTGTCGGCATCGCCCCACCCGTTCTCGTACGGGTCCTCGGCGTAGTAATTGGACATG
GCGACCTCGTCTACGCTAGTGATCGATTGCTGGTATCGCGGTGATTCCTGCATTTGGAAGTACGC
AAAATGACGAGCACAGAAAGTGTGAGGGGACGGAAGAAAGTGGGA
Right flanking sequence: Indices 55552 -- 56051
GTTTGGGTTTGGTAATTGTAGTTTGGTGATGGTATTTTGGAATGGAATTGGTCGTGTAAGTGTTT
TTGATTTGTGGGTCTGATTTTGTTTGCGGGTGTGTGTTTGATTGTGGGTGTGTGTTTGGTTCTGG
GCCTGACTTTGGTAGGGGCCTTTTTGAGTGCGCCTGGTGTATGGCCATAGCACCATGTAGTCTGT
AGCATCAACTGAGTTACATTGCTCGAGGACCTGATCGCTTCGCAACTGTAACAGGTGAACCACTG
TAACCACTGTCACCTTCGCCCCTACCACTCTACCATTGCCTGATCGACAATTGCATATTTACGGG
AACACTAATGACATTGAAGATTCCAGGGACCGCCAGCTGTGTTACCACTGCGTCACGGCTAATCT
CTCAGGTAAACGACATAAACGTGCTAACCTACCCCGCCTAGTTTACCGCGGTGCTGTGTCGTACG
CCGTCAGCGGGTAACACAGTGGAGCGGGTTATTTTCTCAGACACC
Found at i:55656 original size:18 final size:18
Alignment explanation
Indices: 55635--55674 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
55625 TGGGTCTGAT
*
55635 TTTGTTTGCGGGTGTGTG
1 TTTGATTGCGGGTGTGTG
*
55653 TTTGATTGTGGGTGTGTG
1 TTTGATTGCGGGTGTGTG
55671 TTTG
1 TTTG
55675 GTTCTGGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.03, C:0.03, G:0.42, T:0.53
Consensus pattern (18 bp):
TTTGATTGCGGGTGTGTG
Left flanking sequence: Indices 55135 -- 55634
TGGCAAGCTTCGACGACTGGTAGCTGGTGATGTAGCCGGCAGCAACAGCCTTGTCAAAAATGTCT
GTCTCCAACTGGTGGAGTGTCAGCACGTCCTTGTGGTGGGACCAGATGTCTTTGTACTGGTCAGG
GAACGAGTCGCCACCTCCGGACGGGGCCAACAATTGCAGGGCAGTGAACCCCGAATTGTAGCCGT
ACATCGATGCCAGGGGATTGGAGGTGTCGGCATCGCCCCACCCGTTCTCGTACGGGTCCTCGGCG
TAGTAATTGGACATGGCGACCTCGTCTACGCTAGTGATCGATTGCTGGTATCGCGGTGATTCCTG
CATTTGGAAGTACGCAAAATGACGAGCACAGAAAGTGTGAGGGGACGGAAGAAAGTGGGAAGAAA
GTGGTATTGGAGAAAGCGGTATTGGAGGTTTGGGTTTGGTAATTGTAGTTTGGTGATGGTATTTT
GGAATGGAATTGGTCGTGTAAGTGTTTTTGATTTGTGGGTCTGAT
Right flanking sequence: Indices 55675 -- 56174
GTTCTGGGCCTGACTTTGGTAGGGGCCTTTTTGAGTGCGCCTGGTGTATGGCCATAGCACCATGT
AGTCTGTAGCATCAACTGAGTTACATTGCTCGAGGACCTGATCGCTTCGCAACTGTAACAGGTGA
ACCACTGTAACCACTGTCACCTTCGCCCCTACCACTCTACCATTGCCTGATCGACAATTGCATAT
TTACGGGAACACTAATGACATTGAAGATTCCAGGGACCGCCAGCTGTGTTACCACTGCGTCACGG
CTAATCTCTCAGGTAAACGACATAAACGTGCTAACCTACCCCGCCTAGTTTACCGCGGTGCTGTG
TCGTACGCCGTCAGCGGGTAACACAGTGGAGCGGGTTATTTTCTCAGACACCCCGATAAGACCAC
CACGTGTACTGCAACAGCCCACGTATGACTAGATGGCGTTCGGTCCATGACCAACGGCTGGCTCA
GCTTCCACCGCTGCTCCGAAACCTGGCCATTGACAAATCTTGCGT
Found at i:55682 original size:18 final size:18
Alignment explanation
Indices: 55644--55682 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
55634 TTTTGTTTGC
*
55644 GGGTGTGTGTTTGATTGT
1 GGGTGTGTGTTTGATTCT
*
55662 GGGTGTGTGTTTGGTTCT
1 GGGTGTGTGTTTGATTCT
55680 GGG
1 GGG
55683 CCTGACTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.03, G:0.49, T:0.46
Consensus pattern (18 bp):
GGGTGTGTGTTTGATTCT
Left flanking sequence: Indices 55144 -- 55643
TCGACGACTGGTAGCTGGTGATGTAGCCGGCAGCAACAGCCTTGTCAAAAATGTCTGTCTCCAAC
TGGTGGAGTGTCAGCACGTCCTTGTGGTGGGACCAGATGTCTTTGTACTGGTCAGGGAACGAGTC
GCCACCTCCGGACGGGGCCAACAATTGCAGGGCAGTGAACCCCGAATTGTAGCCGTACATCGATG
CCAGGGGATTGGAGGTGTCGGCATCGCCCCACCCGTTCTCGTACGGGTCCTCGGCGTAGTAATTG
GACATGGCGACCTCGTCTACGCTAGTGATCGATTGCTGGTATCGCGGTGATTCCTGCATTTGGAA
GTACGCAAAATGACGAGCACAGAAAGTGTGAGGGGACGGAAGAAAGTGGGAAGAAAGTGGTATTG
GAGAAAGCGGTATTGGAGGTTTGGGTTTGGTAATTGTAGTTTGGTGATGGTATTTTGGAATGGAA
TTGGTCGTGTAAGTGTTTTTGATTTGTGGGTCTGATTTTGTTTGC
Right flanking sequence: Indices 55683 -- 56182
CCTGACTTTGGTAGGGGCCTTTTTGAGTGCGCCTGGTGTATGGCCATAGCACCATGTAGTCTGTA
GCATCAACTGAGTTACATTGCTCGAGGACCTGATCGCTTCGCAACTGTAACAGGTGAACCACTGT
AACCACTGTCACCTTCGCCCCTACCACTCTACCATTGCCTGATCGACAATTGCATATTTACGGGA
ACACTAATGACATTGAAGATTCCAGGGACCGCCAGCTGTGTTACCACTGCGTCACGGCTAATCTC
TCAGGTAAACGACATAAACGTGCTAACCTACCCCGCCTAGTTTACCGCGGTGCTGTGTCGTACGC
CGTCAGCGGGTAACACAGTGGAGCGGGTTATTTTCTCAGACACCCCGATAAGACCACCACGTGTA
CTGCAACAGCCCACGTATGACTAGATGGCGTTCGGTCCATGACCAACGGCTGGCTCAGCTTCCAC
CGCTGCTCCGAAACCTGGCCATTGACAAATCTTGCGTCATCAGGT
Found at i:59691 original size:13 final size:13
Alignment explanation
Indices: 59673--59700 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
59663 GGTAGACGCG
59673 GGGGTGGCAGAAA
1 GGGGTGGCAGAAA
59686 GGGGTGGCAGAAA
1 GGGGTGGCAGAAA
59699 GG
1 GG
59701 CGGGGTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.57, T:0.07
Consensus pattern (13 bp):
GGGGTGGCAGAAA
Left flanking sequence: Indices 59173 -- 59672
GAGCTCAAACCGCTGGGAGCCAAAGTTGTAGAAGATCTTGGCGTGTCGCCGCAGAATCCCCTTCT
CCAGCGACAAGTGGACGTCGACGTCGTGGTGGCTCAGCTGGAACGCTTCGTTCAGCTTGCGGCCA
AGCACCACCTGGAGGGTCTGCACGTAGAAGGTGAAGTTGTCAAAGTCGAGCCGGGCGTATGCCAG
GATCTTCAGCAGCGGGTCCGCCAACAGTGGTGGTTCCAGCTCGCATTTCTTGACCGGAGCCCGGG
GCAGCGGGTGCGGCGACAGCAGCTGCCGGGGCTCGGATCGCACCAGGTCTGGGGTGCCGGGTGCG
TCGGGTTGTGGTTTCGCTGAGTTCTCACTCATTGCCTAGGGCTGCTGCGCTCGTCCGATGTGCCT
GTGTTGATGCGCAATATTTGTCGCGATGGCCCCGTGCGCGATGTCCCGGATGCGTGGGCGGAAGG
TAGAGGTGGGGACACAAGGGAGGTGGGAGAAGGTGGGTAGACGCG
Right flanking sequence: Indices 59701 -- 60200
CGGGGTTGTTTGTTTATAAAGAATTTGGTCAATTGTGCGTTGGGCTACCTTGATGGTAGTGGTTA
GTACAGGCGCACCAGGCGCACCAGGCGCACATGGTGGTTATCGATCACCACGAGTGCAAGTGAAA
TTTCGGGATAAGATGGGAAAACCCGTGGCACCGTAGGTTATGAGGATGCGTTGTGGAAATGGGTA
GGGATAAATTCTAGGGTATGGGTTCCAGGAATGGGTCCCAGGAATGGGTTTCTGAGAACTTATGG
ACGGTAACATCTGACGAGTACTTGTCGTAACTCGTTCAGTACAATTCGGATATTTAAATGTGTAG
CACCTACTAGCATCTTCAGCATTTGCGGTTAGCCAGCTACGTTATTATATTAGTACTACTTTTCA
CTTAATCTCATTGTGTCGTGGCCACTACATGCTCGGAAATATGGATACTCGCTTCCCTCCGGTCT
TCCGTCCGTATTTTGGCGACATAGCCGTCTTGTGACCTTGCCAAA
Found at i:59783 original size:9 final size:9
Alignment explanation
Indices: 59769--59795 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
59759 GTGGTTAGTA
59769 CAGGCGCAC
1 CAGGCGCAC
59778 CAGGCGCAC
1 CAGGCGCAC
59787 CAGGCGCAC
1 CAGGCGCAC
59796 ATGGTGGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.44, G:0.33, T:0.00
Consensus pattern (9 bp):
CAGGCGCAC
Left flanking sequence: Indices 59269 -- 59768
GCTCAGCTGGAACGCTTCGTTCAGCTTGCGGCCAAGCACCACCTGGAGGGTCTGCACGTAGAAGG
TGAAGTTGTCAAAGTCGAGCCGGGCGTATGCCAGGATCTTCAGCAGCGGGTCCGCCAACAGTGGT
GGTTCCAGCTCGCATTTCTTGACCGGAGCCCGGGGCAGCGGGTGCGGCGACAGCAGCTGCCGGGG
CTCGGATCGCACCAGGTCTGGGGTGCCGGGTGCGTCGGGTTGTGGTTTCGCTGAGTTCTCACTCA
TTGCCTAGGGCTGCTGCGCTCGTCCGATGTGCCTGTGTTGATGCGCAATATTTGTCGCGATGGCC
CCGTGCGCGATGTCCCGGATGCGTGGGCGGAAGGTAGAGGTGGGGACACAAGGGAGGTGGGAGAA
GGTGGGTAGACGCGGGGGTGGCAGAAAGGGGTGGCAGAAAGGCGGGGTTGTTTGTTTATAAAGAA
TTTGGTCAATTGTGCGTTGGGCTACCTTGATGGTAGTGGTTAGTA
Right flanking sequence: Indices 59796 -- 60295
ATGGTGGTTATCGATCACCACGAGTGCAAGTGAAATTTCGGGATAAGATGGGAAAACCCGTGGCA
CCGTAGGTTATGAGGATGCGTTGTGGAAATGGGTAGGGATAAATTCTAGGGTATGGGTTCCAGGA
ATGGGTCCCAGGAATGGGTTTCTGAGAACTTATGGACGGTAACATCTGACGAGTACTTGTCGTAA
CTCGTTCAGTACAATTCGGATATTTAAATGTGTAGCACCTACTAGCATCTTCAGCATTTGCGGTT
AGCCAGCTACGTTATTATATTAGTACTACTTTTCACTTAATCTCATTGTGTCGTGGCCACTACAT
GCTCGGAAATATGGATACTCGCTTCCCTCCGGTCTTCCGTCCGTATTTTGGCGACATAGCCGTCT
TGTGACCTTGCCAAACAAATGACCGGACATGTCTCACGATTCCACGACGCTTGCTGTCAAGATAA
TTGGCAATTATCCAGTTGTCGTGTTGTCGATCGTCCCCGTTCATC
Found at i:59929 original size:13 final size:13
Alignment explanation
Indices: 59913--59945 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
59903 ATTCTAGGGT
59913 ATGGGTTCCAGGA
1 ATGGGTTCCAGGA
*
59926 ATGGGTCCCAGGA
1 ATGGGTTCCAGGA
59939 ATGGGTT
1 ATGGGTT
59946 TCTGAGAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.21, C:0.15, G:0.39, T:0.24
Consensus pattern (13 bp):
ATGGGTTCCAGGA
Left flanking sequence: Indices 59413 -- 59912
TTTCTTGACCGGAGCCCGGGGCAGCGGGTGCGGCGACAGCAGCTGCCGGGGCTCGGATCGCACCA
GGTCTGGGGTGCCGGGTGCGTCGGGTTGTGGTTTCGCTGAGTTCTCACTCATTGCCTAGGGCTGC
TGCGCTCGTCCGATGTGCCTGTGTTGATGCGCAATATTTGTCGCGATGGCCCCGTGCGCGATGTC
CCGGATGCGTGGGCGGAAGGTAGAGGTGGGGACACAAGGGAGGTGGGAGAAGGTGGGTAGACGCG
GGGGTGGCAGAAAGGGGTGGCAGAAAGGCGGGGTTGTTTGTTTATAAAGAATTTGGTCAATTGTG
CGTTGGGCTACCTTGATGGTAGTGGTTAGTACAGGCGCACCAGGCGCACCAGGCGCACATGGTGG
TTATCGATCACCACGAGTGCAAGTGAAATTTCGGGATAAGATGGGAAAACCCGTGGCACCGTAGG
TTATGAGGATGCGTTGTGGAAATGGGTAGGGATAAATTCTAGGGT
Right flanking sequence: Indices 59946 -- 60445
TCTGAGAACTTATGGACGGTAACATCTGACGAGTACTTGTCGTAACTCGTTCAGTACAATTCGGA
TATTTAAATGTGTAGCACCTACTAGCATCTTCAGCATTTGCGGTTAGCCAGCTACGTTATTATAT
TAGTACTACTTTTCACTTAATCTCATTGTGTCGTGGCCACTACATGCTCGGAAATATGGATACTC
GCTTCCCTCCGGTCTTCCGTCCGTATTTTGGCGACATAGCCGTCTTGTGACCTTGCCAAACAAAT
GACCGGACATGTCTCACGATTCCACGACGCTTGCTGTCAAGATAATTGGCAATTATCCAGTTGTC
GTGTTGTCGATCGTCCCCGTTCATCACCAACATGCCATAATCTATCAATGCCATTGTGCAACCGG
GTAACACCCGCGTGCCGCGCCCGTCGCTGAGCCCACCCCACGATAAGCTTTGGTTGAGGGGACAC
CCCTCGTGATACGCTTTAGTGCTACTACTTTCAGATCCGCGGGAT
Found at i:61066 original size:11 final size:11
Alignment explanation
Indices: 61050--61081 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
61040 CTGGCGCCCC
61050 CGGTAGCCACG
1 CGGTAGCCACG
61061 CGGTAGCCACG
1 CGGTAGCCACG
61072 CGGTAGCCAC
1 CGGTAGCCAC
61082 CACATCGCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.38, G:0.34, T:0.09
Consensus pattern (11 bp):
CGGTAGCCACG
Left flanking sequence: Indices 60550 -- 61049
AGATGGTCAAACTGGTATTTTTCCCGGATCGGGTGGTTAGGTTAGATACGGCGCATGTACATAGC
CAGCCGCGACACAGCCCGCGCGCTCTGGGGTCAAAATACGATGTAGTAGGGCTGGACCCTGGTCT
ATTCGAGTCCCTTCGGGCCACCCTTCAACGGGGTCCTGGTTAGAGGCGCGCGGTTCCGCAGCTGG
TACATGTCCCCATCCGGTGCGCATGACAACTAGCTTTTGCAGTGCAGAGTTGCAAGGGCAACCAC
GGGGATAATACGGAATTTCATGGCCCCGATGGCGTCGTACATGCTTGGCATTGCGTGGCCATCAC
CACACGACCCGTCGTAAACCAAGTGCCCCACCCGTGACCTCTGCATCGACTAAACAACACCCTTT
TTTTAGACGCATGCCCAATGAGGCAACCACACCCCCGATTGGGTTCCCCCGGGTCCAGTTGCCGT
GGCTCGCTGGCGCCATCTGAAACCAGCAATCACCCCTGGCGCCCC
Right flanking sequence: Indices 61082 -- 61581
CACATCGCTGTGCCTAGCATGGGATCAACCGCACCACGTGACCTGCACCTCAACCTCATCTCAAC
TTATTATCTACGAGACACCATGGCCGGGATCAAGAAGAAGTCGGGTTTGCGGGACAAAGTCGCCA
AACGCAATGTGGCAGCAAAGATCTCGCAGTACACCCTGGAGGCTCCGGGTCTCGCTGAGCCCGAA
CACCACAACCCGATGCTCAAACTCGCCAAAACCACAAAGAGAGAGAAGCGCCAGACAAAGCTGGC
AGGGTTCACCAAGCGGATGATGAACAAGGCCAGCGCCGGCGTCGCCAAGAAGCAGCGCGAGCAGC
GGGGCGAGCTCACCGCCCAGATGGACGACTTGTTGTCGCTGTTGCCCGCAGAGACCGTCACCATC
ACCCGGGCCGTCGACCAGCCGTTTGTCCGATCCAAGACCACCCGCCGCCAGCCCAACGTGCACAA
GCGCACCGGGTTCAAGGCCATCATGACCGAGGAACACGCCAACTT
Found at i:61737 original size:20 final size:20
Alignment explanation
Indices: 61708--61760 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
61698 CGCGTCCGGT
* *
61708 CCAGCAAGCACCCGTACGGC
1 CCAGCCAGCACCCGCACGGC
* * *
61728 CCAGCCAGCACCAGCCCGTC
1 CCAGCCAGCACCCGCACGGC
61748 CCAGCCAGCACCC
1 CCAGCCAGCACCC
61761 AACCTGCTGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.23, C:0.53, G:0.21, T:0.04
Consensus pattern (20 bp):
CCAGCCAGCACCCGCACGGC
Left flanking sequence: Indices 61208 -- 61707
GCCAAACGCAATGTGGCAGCAAAGATCTCGCAGTACACCCTGGAGGCTCCGGGTCTCGCTGAGCC
CGAACACCACAACCCGATGCTCAAACTCGCCAAAACCACAAAGAGAGAGAAGCGCCAGACAAAGC
TGGCAGGGTTCACCAAGCGGATGATGAACAAGGCCAGCGCCGGCGTCGCCAAGAAGCAGCGCGAG
CAGCGGGGCGAGCTCACCGCCCAGATGGACGACTTGTTGTCGCTGTTGCCCGCAGAGACCGTCAC
CATCACCCGGGCCGTCGACCAGCCGTTTGTCCGATCCAAGACCACCCGCCGCCAGCCCAACGTGC
ACAAGCGCACCGGGTTCAAGGCCATCATGACCGAGGAACACGCCAACTTCAACAACGTGTTGCAA
AACCGCGAGTTCCGGCAATCGCCGTTTGAAGCGTTGCGGGCGTCGATCAAGCATAACTTGGAATA
GCCTCCACAGTTGTCCAAAAAATCTAAGCTTTAGTCGCGTCCGGT
Right flanking sequence: Indices 61761 -- 62260
AACCTGCTGCCGATCTGCAGCCCCCGGTTTGTGTCCCCACCCCTGTCGCTTCCCCTGGGGTCTGG
GTCGCCCGCCTCCTGTATATGCATTCTCAATAACATAAAAAATTGTGCGCAGCGCTCGCAACCAA
CAAGAAAAAAAATAACAGGAACGCGTCAATGTAAACAAGCGACGGTCGCATCTCACTTCAAATCA
ACCTCGGCCAATCGCAGTTGCACGCCGATGAAAGACAGTTCGCGGGTGAGCCTTGGGCTGACCGA
CTTGTTGTGCAAACAGTCGATCAGCTTTTTGCACGAGCTCGAGAAACAGCACCACCAGGACCTGT
ATGAGATGCACGGGCTGCCACGGCCGTTGGCCAGTGCCCACGTCGGCGGCGCGGACATTGTCTAC
AACTGCCACGACGAGGCGATGTTCGACGACGACCGGGTGTTCCCGCTGTTGCAGGCGGCCACCGG
CAACGACGACATCGTCAAGTTTGACGACTCCGACCCCACACTCAT
Found at i:65156 original size:27 final size:27
Alignment explanation
Indices: 65122--65190 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
65112 GGCGGCCCCA
* *
65122 GCCTGGTGGCTCTGGCTGGCCTCCATG
1 GCCTGGTGGCTCTGGCCGGCCTCCACG
*
65149 GCCTGGTGGCTCTGGCCGGTCTCCACG
1 GCCTGGTGGCTCTGGCCGGCCTCCACG
*
65176 GTCTGGTGGCTCTGG
1 GCCTGGTGGCTCTGG
65191 GCCCTCAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.03, C:0.32, G:0.39, T:0.26
Consensus pattern (27 bp):
GCCTGGTGGCTCTGGCCGGCCTCCACG
Left flanking sequence: Indices 64622 -- 65121
GGCGGCGATCCCCGACGAGCTGTTCCAGCACGACCCGGTGGAGTTCACCCTCGGCAAGCTCGAGG
GCCGCGACTCGCAGAAGCAGCTCCGCGACCCGCGCAAGCTTCCGCTGGTGGCGACGTTGTACTGC
GACGCCGAGGACCACGAGGACGAGCTCGACATTTGCATCAGCTCCGAGGACGTTGCCCGCACTGG
GCGCGTGTCTACTGCTCACGACGTGTCGGTGGACGAGGGGTCCAAGGGTAGTGTCCGCTCGTTGG
ACCCGCGTGCTGAGACCACGTTAGACCCGCGGGCCCAGTCGTCCGAGCTGGTGGCAGCCGCCCCG
GTGGAGGAAATGCGCTCGTTGGATCCTCGCCTGGGCGCCACCTCGGCTCGCCAGTCGATGACGGT
GTCCCAGCTTGCGATGCTGCACTCGCTGGTGGCGGTGCCGTTGGCGACCCTGCTGATGGGCCCGC
TGATGGTGCTGGTGGCGCTGGCCCGTGTGGTGCTGGGCGGCCCCA
Right flanking sequence: Indices 65191 -- 65690
GCCCTCAAAGCCTGGTGGCGCTGGAACCCGCAGAGTTCCGCGGCCTGCCCGAGCTCCGCGCGGCC
CTGGTCCGTGCCCTGGTGGCACGGCTGGCCTTGAGTTCGCACCAGGACTCGGTCCAGGTGGTGGT
CAACCGCGACACCACCGAGGCACGGCTCCTGGTGGAGCCCGTGCACTTGACGACGCCGCCGCTCC
GCCCGATCTCCGGGATGCTGACGCTGACGGCACAGCCGCGGGTCAGTCTCGAACGGATCCCCTCG
GTCGACGCCAGTGGCTTGCTGCAAGACACCCCCGACGTGCTCGACAACGCCGACAACACCGAGGC
GATCTTGGCGGCCATCAACAACGCCAACACCGCCGACGTGTCCGAGGCGTCGCAGGTGGACATCT
CGCAGGAGCAGCCGCTCTCGCCCACGTCGCCTCGCAAGCTCAACGCGCTGACCCCGCGCCACAGC
CCTCCCGAGCTCCCCTCGCCCGACGTCAAGCTGCCCAAGGTGTTG
Found at i:88840 original size:19 final size:19
Alignment explanation
Indices: 88816--88867 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
88806 TTGAAATTCT
88816 GGTTCGAGATACGAGGCGA
1 GGTTCGAGATACGAGGCGA
* * * *
88835 GGTTCGAGGTACCAGGTGG
1 GGTTCGAGATACGAGGCGA
*
88854 GGTTCGAGAGACGA
1 GGTTCGAGATACGA
88868 CGTTAACTTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.44, T:0.17
Consensus pattern (19 bp):
GGTTCGAGATACGAGGCGA
Left flanking sequence: Indices 88316 -- 88815
GATGGCCCAGGCTCAGGAGGCAAAGAAGGCACGCGAAGCCGGCGAAGCGGCGCCCACCAAGCGCG
TGGGCCAGGCCGACGGGCAGCTTGACGACGAGGACGACGGGCTTTTCAACGCGCTGGATGACATC
AACAGCGACCTCGACGACGGGCTCGAGCTGGAGAAGCTGGACGACGAGGACGGCGACCAGGAGGG
GCAGATCATGTTGTGCTTGTACGACCGGGTGCAGCGGGTCAAGAACAAATGGAAGTGCAACTTGA
AGGAGGGCATTGCCAACATCGATGGCAAAGACTACGTGTTCCAGAAGGCCACCGGCGAGTCCGAG
TGGTAGTCCCACGGGGGTTGATTTCGGCTGTAAGCCATAGTACAAATAATCAGGCAATAAACAAC
TACGTTAGGCAGTTAGAGGGGTTACGGGTTACGAGGTTTGAGGTTTGAAGTCCGAGCTTTGAGGT
TTGGTATTCGAAGTTCGAGCATTGAAGTTCGATGTTTGAAATTCT
Right flanking sequence: Indices 88868 -- 89367
CGTTAACTTTTAGGTTCGGGGTATGAGTTCGAGTCCTGAGCTCCCAGGCATGACCACAGACGAAC
CCGCAGGTAATAAAATGCCGTAGTTTCATCAGTGCGCCCGAGTAAAACGACACATTCTTGCGTCG
GACGGTACCAGGCTATTGTTGCCGCTCCACCCGGGTCTCAGGGGTAATTGCGTTATGACCGGGGT
CGATCTGCGATCCATTGTCTGGGGTGGGGTAAAATCGTTTCGCGTCGGTGGGTGGGAGTGGATTG
CGCAGAAACAGATGCTTGTTGATGCATGCTCGACCGTATGCGGGCCATTCCTCGAGATTCGAGGC
CCATTGTGATCGTCTTTACGAGGCAAACAACGCAATGGGTCACGCTTCCGTGGTCACACAGTTCC
CAGTCCACATTCCAGTATCCACACAGTCCACAGTCCACATTCCACCATCCACACAGACCGCTTCT
TTTCCCTTCCCCACACCGTCGCCTTCCTATTTGCGCACTGAATTA
Found at i:89281 original size:30 final size:30
Alignment explanation
Indices: 89247--89313 Score: 100
Period size: 30 Copynumber: 2.2 Consensus size: 30
89237 CTTCCGTGGT
**
89247 CACACAGTTCC-CAGTCCACATTCCAGTATC
1 CACACAG-TCCACAGTCCACATTCCACCATC
89277 CACACAGTCCACAGTCCACATTCCACCATC
1 CACACAGTCCACAGTCCACATTCCACCATC
89307 CACACAG
1 CACACAG
89314 ACCGCTTCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 3 0.09
30 31 0.91
ACGTcount: A:0.30, C:0.43, G:0.09, T:0.18
Consensus pattern (30 bp):
CACACAGTCCACAGTCCACATTCCACCATC
Left flanking sequence: Indices 88747 -- 89246
GGTTTGAAGTCCGAGCTTTGAGGTTTGGTATTCGAAGTTCGAGCATTGAAGTTCGATGTTTGAAA
TTCTGGTTCGAGATACGAGGCGAGGTTCGAGGTACCAGGTGGGGTTCGAGAGACGACGTTAACTT
TTAGGTTCGGGGTATGAGTTCGAGTCCTGAGCTCCCAGGCATGACCACAGACGAACCCGCAGGTA
ATAAAATGCCGTAGTTTCATCAGTGCGCCCGAGTAAAACGACACATTCTTGCGTCGGACGGTACC
AGGCTATTGTTGCCGCTCCACCCGGGTCTCAGGGGTAATTGCGTTATGACCGGGGTCGATCTGCG
ATCCATTGTCTGGGGTGGGGTAAAATCGTTTCGCGTCGGTGGGTGGGAGTGGATTGCGCAGAAAC
AGATGCTTGTTGATGCATGCTCGACCGTATGCGGGCCATTCCTCGAGATTCGAGGCCCATTGTGA
TCGTCTTTACGAGGCAAACAACGCAATGGGTCACGCTTCCGTGGT
Right flanking sequence: Indices 89314 -- 89813
ACCGCTTCTTTTCCCTTCCCCACACCGTCGCCTTCCTATTTGCGCACTGAATTAGCCTCGTCTAT
CGTGCATGGCTCTTGCAGACGCTGTTGTCAGGTAGCCTCTGTCCGCCCTAGTGGTGACACCGCCA
GCCACCGGTATTGTTCTCGTAATCAACTCCCCTTTCTTTCGAGGCTCCCGGCTGCAGATTCCATC
GATCTCAGATCGTGGCGGTCATGCTGGTGATCGGACCCAGACGCAGCAACAGCAGCCCGGGCCCA
TGCACTCCGCTACATTCCGTACATTTCCCTGGCAATCGGGTTGTTACCCGTAATCCCACTACCAT
GTCCGTTGTCGAGGCCCAGGCACGAGCTCGGCAATTGTTCACGGCAGTGGAACAGAAAAAAGCCC
GCCTCCAGGACACCAACCTCGTGGCGTACGCGTCGCCCCGGTTCCCCGCCACGGGACCGTGCCCG
CTAACCCTCTACCAGACCCTCCGTGGCCACGGTGACAAGGTTGTC
Found at i:89301 original size:23 final size:22
Alignment explanation
Indices: 89257--89310 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
89247 CACACAGTTC
* *
89257 CCAGTCCACATTCCAGTATCCA
1 CCAGTCCACAGTCCAATATCCA
89279 CACAGTCCACAGTCCACAT-TCCA
1 C-CAGTCCACAGTCCA-ATATCCA
89302 CCA-TCCACA
1 CCAGTCCACA
89311 CAGACCGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 6 0.21
22 3 0.11
23 18 0.64
24 1 0.04
ACGTcount: A:0.30, C:0.44, G:0.07, T:0.19
Consensus pattern (22 bp):
CCAGTCCACAGTCCAATATCCA
Left flanking sequence: Indices 88757 -- 89256
CCGAGCTTTGAGGTTTGGTATTCGAAGTTCGAGCATTGAAGTTCGATGTTTGAAATTCTGGTTCG
AGATACGAGGCGAGGTTCGAGGTACCAGGTGGGGTTCGAGAGACGACGTTAACTTTTAGGTTCGG
GGTATGAGTTCGAGTCCTGAGCTCCCAGGCATGACCACAGACGAACCCGCAGGTAATAAAATGCC
GTAGTTTCATCAGTGCGCCCGAGTAAAACGACACATTCTTGCGTCGGACGGTACCAGGCTATTGT
TGCCGCTCCACCCGGGTCTCAGGGGTAATTGCGTTATGACCGGGGTCGATCTGCGATCCATTGTC
TGGGGTGGGGTAAAATCGTTTCGCGTCGGTGGGTGGGAGTGGATTGCGCAGAAACAGATGCTTGT
TGATGCATGCTCGACCGTATGCGGGCCATTCCTCGAGATTCGAGGCCCATTGTGATCGTCTTTAC
GAGGCAAACAACGCAATGGGTCACGCTTCCGTGGTCACACAGTTC
Right flanking sequence: Indices 89311 -- 89810
CAGACCGCTTCTTTTCCCTTCCCCACACCGTCGCCTTCCTATTTGCGCACTGAATTAGCCTCGTC
TATCGTGCATGGCTCTTGCAGACGCTGTTGTCAGGTAGCCTCTGTCCGCCCTAGTGGTGACACCG
CCAGCCACCGGTATTGTTCTCGTAATCAACTCCCCTTTCTTTCGAGGCTCCCGGCTGCAGATTCC
ATCGATCTCAGATCGTGGCGGTCATGCTGGTGATCGGACCCAGACGCAGCAACAGCAGCCCGGGC
CCATGCACTCCGCTACATTCCGTACATTTCCCTGGCAATCGGGTTGTTACCCGTAATCCCACTAC
CATGTCCGTTGTCGAGGCCCAGGCACGAGCTCGGCAATTGTTCACGGCAGTGGAACAGAAAAAAG
CCCGCCTCCAGGACACCAACCTCGTGGCGTACGCGTCGCCCCGGTTCCCCGCCACGGGACCGTGC
CCGCTAACCCTCTACCAGACCCTCCGTGGCCACGGTGACAAGGTT
Found at i:90831 original size:17 final size:17
Alignment explanation
Indices: 90801--90881 Score: 94
Period size: 17 Copynumber: 4.9 Consensus size: 17
90791 GTGGCTGGTG
*
90801 TAGCCGTGCTATCATAC
1 TAGCCGTACTATCATAC
**
90818 TAGTTGTACTATCAT--
1 TAGCCGTACTATCATAC
* *
90833 TAGCCGTACCATCATAA
1 TAGCCGTACTATCATAC
*
90850 TAGCCGTGCTATCATAC
1 TAGCCGTACTATCATAC
90867 TAGCCGTACTATCAT
1 TAGCCGTACTATCAT
90882 TCTATACTTA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
15 12 0.23
17 40 0.77
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (17 bp):
TAGCCGTACTATCATAC
Left flanking sequence: Indices 90301 -- 90800
CGCTGAGTGGCGATGTCACCTGTGTCAAGATGTACTCCACCACCTCGGGGCCTATAGGCACCACC
AAGGAGCCGATCGACCGGGAGCTGTGGCTCCTGGAGCTGCCGTCCATTTCTGGCGCCTCGGGCAC
CATTTCCGGGGTCAATTCCACCAGCTTCGTCGCGGGTACCGACGACGGCATTTTGCGTGTCTACG
ACTTCCGCAGCGACTGCGAGTTGGGGTGCTACCGCTACGGCGCCGGCAGCGCGCGGTCCAGCGTC
GATCTGCGCCGTGCCACCATTCTGGCCGGGTCGATCTTGCTGGTGGCGGTGCTGCCCGGGTCGCG
GTTTGTGTACGCCGCCTACCGTGGTACCGACGGCGTCGTGGTGTGGGACACTGCGCGCGGCGAGG
TGGTGGGCCACATTGGCGCTGCTGCCAAGTCGCAGGTGTCGGGCGTGGCCGTGGCCGGGCTGAGC
GTTGCCGTGGCCCACTGGGACGGCGCGGTTCGCGTGTGGCTGGTG
Right flanking sequence: Indices 90882 -- 91381
TCTATACTTAGGGAATTATTATCATTTTATACTTCGGGTATTACAGTCACACTAGCCGTTCTCAT
ACTAGCCATACTATCATGCCGTACTATTCATTATAACTGTGCTATCATACTAGCCGTGCTATCAT
ACTAGCCATACAATCATACTAACCGTTCTCATAATAGCCGTACTATCATGCCGTACTTTCATGCC
GTACTACAATACTATTCATTCTATACATAGGGTGTTACTATCATACTAGCCGTTCTCTTATTAGC
CGTGCTATCATGCCGTATTATTCATTCTATACTCAGGGTATTACTACCATACTAGCTGTTCTCAT
ACTAGCAGTTCTCATACTAGCCATCTCTTACTAGCCGTACTATCATGCCATACTTTCTAACCACT
ATCATACTAGCCGTACTATTCTATACTACGCTATTTCTTTCCACTTTTCCAAATCCTCGGTGGCC
CGCGCCAACTTGACGGCAAGGATGTCCTTTTCCCGCACCACGTTG
Found at i:90847 original size:32 final size:33
Alignment explanation
Indices: 90801--90881 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 33
90791 GTGGCTGGTG
* * **
90801 TAGCCGTGCTATCATACTAGTTGTACTATCAT-
1 TAGCCGTACTATCATAATAGCCGTACTATCATA
* *
90833 TAGCCGTACCATCATAATAGCCGTGCTATCATA
1 TAGCCGTACTATCATAATAGCCGTACTATCATA
90866 CTAGCCGTACTATCAT
1 -TAGCCGTACTATCAT
90882 TCTATACTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 26 0.65
34 14 0.35
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (33 bp):
TAGCCGTACTATCATAATAGCCGTACTATCATA
Left flanking sequence: Indices 90301 -- 90800
CGCTGAGTGGCGATGTCACCTGTGTCAAGATGTACTCCACCACCTCGGGGCCTATAGGCACCACC
AAGGAGCCGATCGACCGGGAGCTGTGGCTCCTGGAGCTGCCGTCCATTTCTGGCGCCTCGGGCAC
CATTTCCGGGGTCAATTCCACCAGCTTCGTCGCGGGTACCGACGACGGCATTTTGCGTGTCTACG
ACTTCCGCAGCGACTGCGAGTTGGGGTGCTACCGCTACGGCGCCGGCAGCGCGCGGTCCAGCGTC
GATCTGCGCCGTGCCACCATTCTGGCCGGGTCGATCTTGCTGGTGGCGGTGCTGCCCGGGTCGCG
GTTTGTGTACGCCGCCTACCGTGGTACCGACGGCGTCGTGGTGTGGGACACTGCGCGCGGCGAGG
TGGTGGGCCACATTGGCGCTGCTGCCAAGTCGCAGGTGTCGGGCGTGGCCGTGGCCGGGCTGAGC
GTTGCCGTGGCCCACTGGGACGGCGCGGTTCGCGTGTGGCTGGTG
Right flanking sequence: Indices 90882 -- 91381
TCTATACTTAGGGAATTATTATCATTTTATACTTCGGGTATTACAGTCACACTAGCCGTTCTCAT
ACTAGCCATACTATCATGCCGTACTATTCATTATAACTGTGCTATCATACTAGCCGTGCTATCAT
ACTAGCCATACAATCATACTAACCGTTCTCATAATAGCCGTACTATCATGCCGTACTTTCATGCC
GTACTACAATACTATTCATTCTATACATAGGGTGTTACTATCATACTAGCCGTTCTCTTATTAGC
CGTGCTATCATGCCGTATTATTCATTCTATACTCAGGGTATTACTACCATACTAGCTGTTCTCAT
ACTAGCAGTTCTCATACTAGCCATCTCTTACTAGCCGTACTATCATGCCATACTTTCTAACCACT
ATCATACTAGCCGTACTATTCTATACTACGCTATTTCTTTCCACTTTTCCAAATCCTCGGTGGCC
CGCGCCAACTTGACGGCAAGGATGTCCTTTTCCCGCACCACGTTG
Found at i:90904 original size:25 final size:25
Alignment explanation
Indices: 90876--90924 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
90866 CTAGCCGTAC
90876 TATCATTCTATACTTAGGGAATTAT
1 TATCATTCTATACTTAGGGAATTAT
* * *
90901 TATCATTTTATACTTCGGGTATTA
1 TATCATTCTATACTTAGGGAATTA
90925 CAGTCACACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (25 bp):
TATCATTCTATACTTAGGGAATTAT
Left flanking sequence: Indices 90376 -- 90875
TCGACCGGGAGCTGTGGCTCCTGGAGCTGCCGTCCATTTCTGGCGCCTCGGGCACCATTTCCGGG
GTCAATTCCACCAGCTTCGTCGCGGGTACCGACGACGGCATTTTGCGTGTCTACGACTTCCGCAG
CGACTGCGAGTTGGGGTGCTACCGCTACGGCGCCGGCAGCGCGCGGTCCAGCGTCGATCTGCGCC
GTGCCACCATTCTGGCCGGGTCGATCTTGCTGGTGGCGGTGCTGCCCGGGTCGCGGTTTGTGTAC
GCCGCCTACCGTGGTACCGACGGCGTCGTGGTGTGGGACACTGCGCGCGGCGAGGTGGTGGGCCA
CATTGGCGCTGCTGCCAAGTCGCAGGTGTCGGGCGTGGCCGTGGCCGGGCTGAGCGTTGCCGTGG
CCCACTGGGACGGCGCGGTTCGCGTGTGGCTGGTGTAGCCGTGCTATCATACTAGTTGTACTATC
ATTAGCCGTACCATCATAATAGCCGTGCTATCATACTAGCCGTAC
Right flanking sequence: Indices 90925 -- 91424
CAGTCACACTAGCCGTTCTCATACTAGCCATACTATCATGCCGTACTATTCATTATAACTGTGCT
ATCATACTAGCCGTGCTATCATACTAGCCATACAATCATACTAACCGTTCTCATAATAGCCGTAC
TATCATGCCGTACTTTCATGCCGTACTACAATACTATTCATTCTATACATAGGGTGTTACTATCA
TACTAGCCGTTCTCTTATTAGCCGTGCTATCATGCCGTATTATTCATTCTATACTCAGGGTATTA
CTACCATACTAGCTGTTCTCATACTAGCAGTTCTCATACTAGCCATCTCTTACTAGCCGTACTAT
CATGCCATACTTTCTAACCACTATCATACTAGCCGTACTATTCTATACTACGCTATTTCTTTCCA
CTTTTCCAAATCCTCGGTGGCCCGCGCCAACTTGACGGCAAGGATGTCCTTTTCCCGCACCACGT
TGCGCACCTCGTCCTCGTGCTGGCGGCGGGCCTTGGCCACCTTCT
Found at i:91005 original size:17 final size:17
Alignment explanation
Indices: 90943--91060 Score: 79
Period size: 17 Copynumber: 7.2 Consensus size: 17
90933 CTAGCCGTTC
*
90943 TCATACTAGCCATACTA
1 TCATACTAGCCGTACTA
90960 TC--A-T-GCCGTACTA
1 TCATACTAGCCGTACTA
* * *
90973 TTCATTA-TAACTGTGCTA
1 -TCA-TACTAGCCGTACTA
*
90991 TCATACTAGCCGTGCTA
1 TCATACTAGCCGTACTA
* *
91008 TCATACTAGCCATACAA
1 TCATACTAGCCGTACTA
* *
91025 TCATACTAACCGT--TC
1 TCATACTAGCCGTACTA
*
91040 TCATAATAGCCGTACTA
1 TCATACTAGCCGTACTA
91057 TCAT
1 TCAT
91061 GCCGTACTTT
Statistics
Matches: 77, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
13 8 0.10
14 3 0.04
15 12 0.16
16 2 0.03
17 46 0.60
18 6 0.08
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.32
Consensus pattern (17 bp):
TCATACTAGCCGTACTA
Left flanking sequence: Indices 90443 -- 90942
CAATTCCACCAGCTTCGTCGCGGGTACCGACGACGGCATTTTGCGTGTCTACGACTTCCGCAGCG
ACTGCGAGTTGGGGTGCTACCGCTACGGCGCCGGCAGCGCGCGGTCCAGCGTCGATCTGCGCCGT
GCCACCATTCTGGCCGGGTCGATCTTGCTGGTGGCGGTGCTGCCCGGGTCGCGGTTTGTGTACGC
CGCCTACCGTGGTACCGACGGCGTCGTGGTGTGGGACACTGCGCGCGGCGAGGTGGTGGGCCACA
TTGGCGCTGCTGCCAAGTCGCAGGTGTCGGGCGTGGCCGTGGCCGGGCTGAGCGTTGCCGTGGCC
CACTGGGACGGCGCGGTTCGCGTGTGGCTGGTGTAGCCGTGCTATCATACTAGTTGTACTATCAT
TAGCCGTACCATCATAATAGCCGTGCTATCATACTAGCCGTACTATCATTCTATACTTAGGGAAT
TATTATCATTTTATACTTCGGGTATTACAGTCACACTAGCCGTTC
Right flanking sequence: Indices 91061 -- 91560
GCCGTACTTTCATGCCGTACTACAATACTATTCATTCTATACATAGGGTGTTACTATCATACTAG
CCGTTCTCTTATTAGCCGTGCTATCATGCCGTATTATTCATTCTATACTCAGGGTATTACTACCA
TACTAGCTGTTCTCATACTAGCAGTTCTCATACTAGCCATCTCTTACTAGCCGTACTATCATGCC
ATACTTTCTAACCACTATCATACTAGCCGTACTATTCTATACTACGCTATTTCTTTCCACTTTTC
CAAATCCTCGGTGGCCCGCGCCAACTTGACGGCAAGGATGTCCTTTTCCCGCACCACGTTGCGCA
CCTCGTCCTCGTGCTGGCGGCGGGCCTTGGCCACCTTCTCGTTGTACTTTTTCGTGTACTCGACG
TGCAAGTACGACGAGAGGTCGCTGAGGCGCTTTTCCTGCTCGCGGTCGAGCTCGTCGTACCGCTG
GCTCCACTCGTCCTGGAGGGTGCGCAACTGGGCCTCGTAGTCGTC
Found at i:91050 original size:32 final size:33
Alignment explanation
Indices: 90990--91060 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 33
90980 TAACTGTGCT
* *
90990 ATCATACTAGCCGTGCTATCATACTAGCCATACA
1 ATCATACTAACCGT-CTATCATAATAGCCATACA
* * *
91024 ATCATACTAACCGT-TCTCATAATAGCCGTACT
1 ATCATACTAACCGTCTATCATAATAGCCATACA
91056 ATCAT
1 ATCAT
91061 GCCGTACTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 19 0.59
34 13 0.41
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (33 bp):
ATCATACTAACCGTCTATCATAATAGCCATACA
Left flanking sequence: Indices 90490 -- 90989
TCTACGACTTCCGCAGCGACTGCGAGTTGGGGTGCTACCGCTACGGCGCCGGCAGCGCGCGGTCC
AGCGTCGATCTGCGCCGTGCCACCATTCTGGCCGGGTCGATCTTGCTGGTGGCGGTGCTGCCCGG
GTCGCGGTTTGTGTACGCCGCCTACCGTGGTACCGACGGCGTCGTGGTGTGGGACACTGCGCGCG
GCGAGGTGGTGGGCCACATTGGCGCTGCTGCCAAGTCGCAGGTGTCGGGCGTGGCCGTGGCCGGG
CTGAGCGTTGCCGTGGCCCACTGGGACGGCGCGGTTCGCGTGTGGCTGGTGTAGCCGTGCTATCA
TACTAGTTGTACTATCATTAGCCGTACCATCATAATAGCCGTGCTATCATACTAGCCGTACTATC
ATTCTATACTTAGGGAATTATTATCATTTTATACTTCGGGTATTACAGTCACACTAGCCGTTCTC
ATACTAGCCATACTATCATGCCGTACTATTCATTATAACTGTGCT
Right flanking sequence: Indices 91061 -- 91560
GCCGTACTTTCATGCCGTACTACAATACTATTCATTCTATACATAGGGTGTTACTATCATACTAG
CCGTTCTCTTATTAGCCGTGCTATCATGCCGTATTATTCATTCTATACTCAGGGTATTACTACCA
TACTAGCTGTTCTCATACTAGCAGTTCTCATACTAGCCATCTCTTACTAGCCGTACTATCATGCC
ATACTTTCTAACCACTATCATACTAGCCGTACTATTCTATACTACGCTATTTCTTTCCACTTTTC
CAAATCCTCGGTGGCCCGCGCCAACTTGACGGCAAGGATGTCCTTTTCCCGCACCACGTTGCGCA
CCTCGTCCTCGTGCTGGCGGCGGGCCTTGGCCACCTTCTCGTTGTACTTTTTCGTGTACTCGACG
TGCAAGTACGACGAGAGGTCGCTGAGGCGCTTTTCCTGCTCGCGGTCGAGCTCGTCGTACCGCTG
GCTCCACTCGTCCTGGAGGGTGCGCAACTGGGCCTCGTAGTCGTC
Found at i:91066 original size:13 final size:13
Alignment explanation
Indices: 91048--91082 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
91038 TCTCATAATA
91048 GCCGTACTATCAT
1 GCCGTACTATCAT
*
91061 GCCGTACTTTCAT
1 GCCGTACTATCAT
91074 GCCGTACTA
1 GCCGTACTA
91083 CAATACTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.20, C:0.31, G:0.17, T:0.31
Consensus pattern (13 bp):
GCCGTACTATCAT
Left flanking sequence: Indices 90548 -- 91047
GCGGTCCAGCGTCGATCTGCGCCGTGCCACCATTCTGGCCGGGTCGATCTTGCTGGTGGCGGTGC
TGCCCGGGTCGCGGTTTGTGTACGCCGCCTACCGTGGTACCGACGGCGTCGTGGTGTGGGACACT
GCGCGCGGCGAGGTGGTGGGCCACATTGGCGCTGCTGCCAAGTCGCAGGTGTCGGGCGTGGCCGT
GGCCGGGCTGAGCGTTGCCGTGGCCCACTGGGACGGCGCGGTTCGCGTGTGGCTGGTGTAGCCGT
GCTATCATACTAGTTGTACTATCATTAGCCGTACCATCATAATAGCCGTGCTATCATACTAGCCG
TACTATCATTCTATACTTAGGGAATTATTATCATTTTATACTTCGGGTATTACAGTCACACTAGC
CGTTCTCATACTAGCCATACTATCATGCCGTACTATTCATTATAACTGTGCTATCATACTAGCCG
TGCTATCATACTAGCCATACAATCATACTAACCGTTCTCATAATA
Right flanking sequence: Indices 91083 -- 91582
CAATACTATTCATTCTATACATAGGGTGTTACTATCATACTAGCCGTTCTCTTATTAGCCGTGCT
ATCATGCCGTATTATTCATTCTATACTCAGGGTATTACTACCATACTAGCTGTTCTCATACTAGC
AGTTCTCATACTAGCCATCTCTTACTAGCCGTACTATCATGCCATACTTTCTAACCACTATCATA
CTAGCCGTACTATTCTATACTACGCTATTTCTTTCCACTTTTCCAAATCCTCGGTGGCCCGCGCC
AACTTGACGGCAAGGATGTCCTTTTCCCGCACCACGTTGCGCACCTCGTCCTCGTGCTGGCGGCG
GGCCTTGGCCACCTTCTCGTTGTACTTTTTCGTGTACTCGACGTGCAAGTACGACGAGAGGTCGC
TGAGGCGCTTTTCCTGCTCGCGGTCGAGCTCGTCGTACCGCTGGCTCCACTCGTCCTGGAGGGTG
CGCAACTGGGCCTCGTAGTCGTCCACCTTGGCGTCGAGGTCGTGC
Found at i:91209 original size:15 final size:15
Alignment explanation
Indices: 91189--91227 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
91179 GTATTACTAC
*
91189 CATACTAGCTGTTCT
1 CATACTAGCAGTTCT
91204 CATACTAGCAGTTCT
1 CATACTAGCAGTTCT
91219 CATACTAGC
1 CATACTAGC
91228 CATCTCTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (15 bp):
CATACTAGCAGTTCT
Left flanking sequence: Indices 90689 -- 91188
GGTGGTGGGCCACATTGGCGCTGCTGCCAAGTCGCAGGTGTCGGGCGTGGCCGTGGCCGGGCTGA
GCGTTGCCGTGGCCCACTGGGACGGCGCGGTTCGCGTGTGGCTGGTGTAGCCGTGCTATCATACT
AGTTGTACTATCATTAGCCGTACCATCATAATAGCCGTGCTATCATACTAGCCGTACTATCATTC
TATACTTAGGGAATTATTATCATTTTATACTTCGGGTATTACAGTCACACTAGCCGTTCTCATAC
TAGCCATACTATCATGCCGTACTATTCATTATAACTGTGCTATCATACTAGCCGTGCTATCATAC
TAGCCATACAATCATACTAACCGTTCTCATAATAGCCGTACTATCATGCCGTACTTTCATGCCGT
ACTACAATACTATTCATTCTATACATAGGGTGTTACTATCATACTAGCCGTTCTCTTATTAGCCG
TGCTATCATGCCGTATTATTCATTCTATACTCAGGGTATTACTAC
Right flanking sequence: Indices 91228 -- 91727
CATCTCTTACTAGCCGTACTATCATGCCATACTTTCTAACCACTATCATACTAGCCGTACTATTC
TATACTACGCTATTTCTTTCCACTTTTCCAAATCCTCGGTGGCCCGCGCCAACTTGACGGCAAGG
ATGTCCTTTTCCCGCACCACGTTGCGCACCTCGTCCTCGTGCTGGCGGCGGGCCTTGGCCACCTT
CTCGTTGTACTTTTTCGTGTACTCGACGTGCAAGTACGACGAGAGGTCGCTGAGGCGCTTTTCCT
GCTCGCGGTCGAGCTCGTCGTACCGCTGGCTCCACTCGTCCTGGAGGGTGCGCAACTGGGCCTCG
TAGTCGTCCACCTTGGCGTCGAGGTCGTGCTGGAGCGCCGCCACCTCGCGCTCGTAGCGCGCGTT
GAGGTTCTTCAGCGTCTCGATGGTGTCCAAGAGCCCGCTGAGCTTGCGCTCGTCCTCGGCGATCG
CCGCGTTCTTGTCGGCGAGCCGCTGGTTGAGCGCGTCCACCTCGG
Found at i:91238 original size:14 final size:14
Alignment explanation
Indices: 91201--91242 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
91191 TACTAGCTGT
91201 TCTCATACTAG-CA
1 TCTCATACTAGCCA
91214 GTTCTCATACTAGCCA
1 --TCTCATACTAGCCA
*
91230 TCTCTTACTAGCC
1 TCTCATACTAGCC
91243 GTACTATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 12 0.48
15 11 0.44
16 2 0.08
ACGTcount: A:0.24, C:0.33, G:0.10, T:0.33
Consensus pattern (14 bp):
TCTCATACTAGCCA
Left flanking sequence: Indices 90701 -- 91200
CATTGGCGCTGCTGCCAAGTCGCAGGTGTCGGGCGTGGCCGTGGCCGGGCTGAGCGTTGCCGTGG
CCCACTGGGACGGCGCGGTTCGCGTGTGGCTGGTGTAGCCGTGCTATCATACTAGTTGTACTATC
ATTAGCCGTACCATCATAATAGCCGTGCTATCATACTAGCCGTACTATCATTCTATACTTAGGGA
ATTATTATCATTTTATACTTCGGGTATTACAGTCACACTAGCCGTTCTCATACTAGCCATACTAT
CATGCCGTACTATTCATTATAACTGTGCTATCATACTAGCCGTGCTATCATACTAGCCATACAAT
CATACTAACCGTTCTCATAATAGCCGTACTATCATGCCGTACTTTCATGCCGTACTACAATACTA
TTCATTCTATACATAGGGTGTTACTATCATACTAGCCGTTCTCTTATTAGCCGTGCTATCATGCC
GTATTATTCATTCTATACTCAGGGTATTACTACCATACTAGCTGT
Right flanking sequence: Indices 91243 -- 91742
GTACTATCATGCCATACTTTCTAACCACTATCATACTAGCCGTACTATTCTATACTACGCTATTT
CTTTCCACTTTTCCAAATCCTCGGTGGCCCGCGCCAACTTGACGGCAAGGATGTCCTTTTCCCGC
ACCACGTTGCGCACCTCGTCCTCGTGCTGGCGGCGGGCCTTGGCCACCTTCTCGTTGTACTTTTT
CGTGTACTCGACGTGCAAGTACGACGAGAGGTCGCTGAGGCGCTTTTCCTGCTCGCGGTCGAGCT
CGTCGTACCGCTGGCTCCACTCGTCCTGGAGGGTGCGCAACTGGGCCTCGTAGTCGTCCACCTTG
GCGTCGAGGTCGTGCTGGAGCGCCGCCACCTCGCGCTCGTAGCGCGCGTTGAGGTTCTTCAGCGT
CTCGATGGTGTCCAAGAGCCCGCTGAGCTTGCGCTCGTCCTCGGCGATCGCCGCGTTCTTGTCGG
CGAGCCGCTGGTTGAGCGCGTCCACCTCGGCGTGGAGCGCGGCCA
Found at i:91760 original size:21 final size:21
Alignment explanation
Indices: 91719--91793 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
91709 TTGAGCGCGT
* *
91719 CCACCTCGG-CGTGGAGCGCGG
1 CCACCTCGGTCTTGTAG-GCGG
*
91740 CCACCTCGGTTTTGTAGGCGG
1 CCACCTCGGTCTTGTAGGCGG
*
91761 CCACCTCGGACTTGTAGGAC-G
1 CCACCTCGGTCTTGTAGG-CGG
91782 CCACCTCGGTCT
1 CCACCTCGGTCT
91794 CGAGGTGGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 41 0.89
22 5 0.11
ACGTcount: A:0.12, C:0.36, G:0.32, T:0.20
Consensus pattern (21 bp):
CCACCTCGGTCTTGTAGGCGG
Left flanking sequence: Indices 91219 -- 91718
CATACTAGCCATCTCTTACTAGCCGTACTATCATGCCATACTTTCTAACCACTATCATACTAGCC
GTACTATTCTATACTACGCTATTTCTTTCCACTTTTCCAAATCCTCGGTGGCCCGCGCCAACTTG
ACGGCAAGGATGTCCTTTTCCCGCACCACGTTGCGCACCTCGTCCTCGTGCTGGCGGCGGGCCTT
GGCCACCTTCTCGTTGTACTTTTTCGTGTACTCGACGTGCAAGTACGACGAGAGGTCGCTGAGGC
GCTTTTCCTGCTCGCGGTCGAGCTCGTCGTACCGCTGGCTCCACTCGTCCTGGAGGGTGCGCAAC
TGGGCCTCGTAGTCGTCCACCTTGGCGTCGAGGTCGTGCTGGAGCGCCGCCACCTCGCGCTCGTA
GCGCGCGTTGAGGTTCTTCAGCGTCTCGATGGTGTCCAAGAGCCCGCTGAGCTTGCGCTCGTCCT
CGGCGATCGCCGCGTTCTTGTCGGCGAGCCGCTGGTTGAGCGCGT
Right flanking sequence: Indices 91794 -- 92293
CGAGGTGGGTGCTCGTCTGCTGGACGCGCTCGTGGTCGCGCTGGGCCCGTTTGAGCTGGGCCCGG
GCGTCGTCGAGCTCGCGCAAGTACTGCGACACCTCCTGCGACCACCCGTCGCGGTCGGCGCTCCA
CTCGCGCTGGGCCGTGTCGTACTCGTGCTGGGCGGCGGTGGCCTTGGTGCGCTCGGCGTCGCACT
GCTGGTGCACCGCTGCCAACTCGTCGTGGATGGCGTCGTGGGCGGCCTTGGTGGTGTCCAACTCG
GCGCGGAGCAGGTCGGCGTCGCGCTGGCTCGAGCGGAGCTCGGTCTTGAGGCGGTCGTTCTCCTC
GCGCGCCTGGTGCACCATGCGGTCCAAGTTGGCGAGCTCCTCCTCCACCTTGTGCATCTGGTCGC
GATACTCGCCGTTGTCGTGGGTCAAGTGGGCGATCTTGGCCACCAACTGCTGGCGCTCGTCGTCC
AAGGTGGCGTGCCGCTGCATGAGCTCTTCCTCCTGCGCGAGGTGG
Found at i:92472 original size:21 final size:21
Alignment explanation
Indices: 92413--92473 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
92403 GGACCGCGGC
**
92413 GGCGAGGTCGGTGCGGGCATT
1 GGCGAGGTCGGTGCGGGTGTT
*
92434 GGCGAGTTCGGTGCGGGTGTT
1 GGCGAGGTCGGTGCGGGTGTT
*
92455 GGCGAGGTCGTTGCGGGTG
1 GGCGAGGTCGGTGCGGGTG
92474 GAGACGAGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.07, C:0.16, G:0.54, T:0.23
Consensus pattern (21 bp):
GGCGAGGTCGGTGCGGGTGTT
Left flanking sequence: Indices 91913 -- 92412
TCGGCGCTCCACTCGCGCTGGGCCGTGTCGTACTCGTGCTGGGCGGCGGTGGCCTTGGTGCGCTC
GGCGTCGCACTGCTGGTGCACCGCTGCCAACTCGTCGTGGATGGCGTCGTGGGCGGCCTTGGTGG
TGTCCAACTCGGCGCGGAGCAGGTCGGCGTCGCGCTGGCTCGAGCGGAGCTCGGTCTTGAGGCGG
TCGTTCTCCTCGCGCGCCTGGTGCACCATGCGGTCCAAGTTGGCGAGCTCCTCCTCCACCTTGTG
CATCTGGTCGCGATACTCGCCGTTGTCGTGGGTCAAGTGGGCGATCTTGGCCACCAACTGCTGGC
GCTCGTCGTCCAAGGTGGCGTGCCGCTGCATGAGCTCTTCCTCCTGCGCGAGGTGGGTCTTGCGG
GCGTTGTCGTACTCGTCCTGGAGGATTTCCTGTTGCTCGTGGGCCAACGCGAGCTTGGTTTGCGC
CTCTTCGAGCTGGGATGCTGCGTGGTCGCGGTGCTGGACCGCGGC
Right flanking sequence: Indices 92474 -- 92973
GAGACGAGCTCGTCCTCTAGCGCACGGGTCTCGTCTGCGTGGCGGGAGTCCGCTTGCGCGAGCTC
GGCCTGGGTCTCTTTGAGCTCGGCCTGGGTCGCGTTGAGCTCGGCTCGTGACTTTTCGAGCTCCG
CCCGGGTGCTTTCGAGCTCGGCCTGGGTCTGCTCAAGCTCGTTCTTGACGCCTCCAAACCGGTCT
TCCACCTCGCGGACCTGGCGCTCAAGCCCGCGGGCTGAGCTGCGAGCGTCCTCTGCCTCCTTCCG
GCTCGCTTCCGCCTCCGTCCGGCTCTTCTCTGCCTCCTTCTGGCTCTTCTCTGCGTCGTCCTCCG
CCTGCGACACCCGCTTGGCCGCGGCCTGCGCCTGGAGCTCGGCCACCTTCACCTTCTTGAAAAGC
AGCGCGAGCTCGGCCTCGTGGCGCCGCTGGGTCACCGCGGCCACCTCCTTCTCCGTCCGGAGCTC
GCGCGCCTCGTGCTGCGCGGCCCGGCACTGGTCGTGGCGCTCACG
Found at i:92559 original size:21 final size:20
Alignment explanation
Indices: 92533--92633 Score: 87
Period size: 21 Copynumber: 4.8 Consensus size: 20
92523 CCGCTTGCGC
92533 GAGCTCGGCCTGGGTCTCTTT
1 GAGCTCGGCCTGGGTCT-TTT
**
92554 GAGCTCGGCCTGGGTCGCGTT
1 GAGCTCGGCCTGGGTC-TTTT
* *
92575 GAGCTCGG-CTCGTGACTTTT
1 GAGCTCGGCCT-GGGTCTTTT
* * *
92595 CGAGCTCCGCCCGGGTGCTTTC
1 -GAGCTCGGCCTGGGT-CTTTT
92617 GAGCTCGGCCTGGGTCT
1 GAGCTCGGCCTGGGTCT
92634 GCTCAAGCTC
Statistics
Matches: 62, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
20 6 0.10
21 51 0.82
22 5 0.08
ACGTcount: A:0.06, C:0.31, G:0.36, T:0.28
Consensus pattern (20 bp):
GAGCTCGGCCTGGGTCTTTT
Left flanking sequence: Indices 92033 -- 92532
GCCTTGGTGGTGTCCAACTCGGCGCGGAGCAGGTCGGCGTCGCGCTGGCTCGAGCGGAGCTCGGT
CTTGAGGCGGTCGTTCTCCTCGCGCGCCTGGTGCACCATGCGGTCCAAGTTGGCGAGCTCCTCCT
CCACCTTGTGCATCTGGTCGCGATACTCGCCGTTGTCGTGGGTCAAGTGGGCGATCTTGGCCACC
AACTGCTGGCGCTCGTCGTCCAAGGTGGCGTGCCGCTGCATGAGCTCTTCCTCCTGCGCGAGGTG
GGTCTTGCGGGCGTTGTCGTACTCGTCCTGGAGGATTTCCTGTTGCTCGTGGGCCAACGCGAGCT
TGGTTTGCGCCTCTTCGAGCTGGGATGCTGCGTGGTCGCGGTGCTGGACCGCGGCGGCGAGGTCG
GTGCGGGCATTGGCGAGTTCGGTGCGGGTGTTGGCGAGGTCGTTGCGGGTGGAGACGAGCTCGTC
CTCTAGCGCACGGGTCTCGTCTGCGTGGCGGGAGTCCGCTTGCGC
Right flanking sequence: Indices 92634 -- 93133
GCTCAAGCTCGTTCTTGACGCCTCCAAACCGGTCTTCCACCTCGCGGACCTGGCGCTCAAGCCCG
CGGGCTGAGCTGCGAGCGTCCTCTGCCTCCTTCCGGCTCGCTTCCGCCTCCGTCCGGCTCTTCTC
TGCCTCCTTCTGGCTCTTCTCTGCGTCGTCCTCCGCCTGCGACACCCGCTTGGCCGCGGCCTGCG
CCTGGAGCTCGGCCACCTTCACCTTCTTGAAAAGCAGCGCGAGCTCGGCCTCGTGGCGCCGCTGG
GTCACCGCGGCCACCTCCTTCTCCGTCCGGAGCTCGCGCGCCTCGTGCTGCGCGGCCCGGCACTG
GTCGTGGCGCTCACGGGCCTCCTGGCGGGCCTGCTGGACGTCGGCGTCGCGCTTGGCGAGCTCGT
CCCGCGCCGCCGCAAGCTCGGCCTCGAGCCCGTGCGCGAGCTGCTCGTAGCTGGCGCGGATGGCC
GCGAGCTCGTCGGGCGCGTAGCGGAGCGCCGGGGTGAAATGCTGG
Found at i:92581 original size:42 final size:42
Alignment explanation
Indices: 92532--92633 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 42
92522 TCCGCTTGCG
* *
92532 CGAGCTCGGCCTGGGTCTCTTT-GAGCTCGGCCTGGGTCGCGTT
1 CGAGCTCGGCCTGGGTCT-TTTCGAGCTCCGCCCGGGT-GCGTT
* * *
92575 -GAGCTCGG-CTCGTGACTTTTCGAGCTCCGCCCGGGTGCTTT
1 CGAGCTCGGCCT-GGGTCTTTTCGAGCTCCGCCCGGGTGCGTT
92616 CGAGCTCGGCCTGGGTCT
1 CGAGCTCGGCCTGGGTCT
92634 GCTCAAGCTC
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
41 9 0.19
42 37 0.77
43 2 0.04
ACGTcount: A:0.06, C:0.31, G:0.35, T:0.27
Consensus pattern (42 bp):
CGAGCTCGGCCTGGGTCTTTTCGAGCTCCGCCCGGGTGCGTT
Left flanking sequence: Indices 92032 -- 92531
GGCCTTGGTGGTGTCCAACTCGGCGCGGAGCAGGTCGGCGTCGCGCTGGCTCGAGCGGAGCTCGG
TCTTGAGGCGGTCGTTCTCCTCGCGCGCCTGGTGCACCATGCGGTCCAAGTTGGCGAGCTCCTCC
TCCACCTTGTGCATCTGGTCGCGATACTCGCCGTTGTCGTGGGTCAAGTGGGCGATCTTGGCCAC
CAACTGCTGGCGCTCGTCGTCCAAGGTGGCGTGCCGCTGCATGAGCTCTTCCTCCTGCGCGAGGT
GGGTCTTGCGGGCGTTGTCGTACTCGTCCTGGAGGATTTCCTGTTGCTCGTGGGCCAACGCGAGC
TTGGTTTGCGCCTCTTCGAGCTGGGATGCTGCGTGGTCGCGGTGCTGGACCGCGGCGGCGAGGTC
GGTGCGGGCATTGGCGAGTTCGGTGCGGGTGTTGGCGAGGTCGTTGCGGGTGGAGACGAGCTCGT
CCTCTAGCGCACGGGTCTCGTCTGCGTGGCGGGAGTCCGCTTGCG
Right flanking sequence: Indices 92634 -- 93133
GCTCAAGCTCGTTCTTGACGCCTCCAAACCGGTCTTCCACCTCGCGGACCTGGCGCTCAAGCCCG
CGGGCTGAGCTGCGAGCGTCCTCTGCCTCCTTCCGGCTCGCTTCCGCCTCCGTCCGGCTCTTCTC
TGCCTCCTTCTGGCTCTTCTCTGCGTCGTCCTCCGCCTGCGACACCCGCTTGGCCGCGGCCTGCG
CCTGGAGCTCGGCCACCTTCACCTTCTTGAAAAGCAGCGCGAGCTCGGCCTCGTGGCGCCGCTGG
GTCACCGCGGCCACCTCCTTCTCCGTCCGGAGCTCGCGCGCCTCGTGCTGCGCGGCCCGGCACTG
GTCGTGGCGCTCACGGGCCTCCTGGCGGGCCTGCTGGACGTCGGCGTCGCGCTTGGCGAGCTCGT
CCCGCGCCGCCGCAAGCTCGGCCTCGAGCCCGTGCGCGAGCTGCTCGTAGCTGGCGCGGATGGCC
GCGAGCTCGTCGGGCGCGTAGCGGAGCGCCGGGGTGAAATGCTGG
Found at i:92749 original size:21 final size:22
Alignment explanation
Indices: 92719--92787 Score: 83
Period size: 21 Copynumber: 3.3 Consensus size: 22
92709 TGCGAGCGTC
92719 CTCTGCCTCCTTCCGGCTCGCTT
1 CTCTGCCTCCTTCCGGCTC-CTT
*
92742 C-C-GCCTCCGTCCGGCT-CTT
1 CTCTGCCTCCTTCCGGCTCCTT
*
92761 CTCTGCCTCCTTCTGGCT-CTT
1 CTCTGCCTCCTTCCGGCTCCTT
92782 CTCTGC
1 CTCTGC
92788 GTCGTCCTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
19 4 0.10
20 1 0.02
21 34 0.83
22 1 0.02
23 1 0.02
ACGTcount: A:0.00, C:0.48, G:0.17, T:0.35
Consensus pattern (22 bp):
CTCTGCCTCCTTCCGGCTCCTT
Left flanking sequence: Indices 92219 -- 92718
TTGGCCACCAACTGCTGGCGCTCGTCGTCCAAGGTGGCGTGCCGCTGCATGAGCTCTTCCTCCTG
CGCGAGGTGGGTCTTGCGGGCGTTGTCGTACTCGTCCTGGAGGATTTCCTGTTGCTCGTGGGCCA
ACGCGAGCTTGGTTTGCGCCTCTTCGAGCTGGGATGCTGCGTGGTCGCGGTGCTGGACCGCGGCG
GCGAGGTCGGTGCGGGCATTGGCGAGTTCGGTGCGGGTGTTGGCGAGGTCGTTGCGGGTGGAGAC
GAGCTCGTCCTCTAGCGCACGGGTCTCGTCTGCGTGGCGGGAGTCCGCTTGCGCGAGCTCGGCCT
GGGTCTCTTTGAGCTCGGCCTGGGTCGCGTTGAGCTCGGCTCGTGACTTTTCGAGCTCCGCCCGG
GTGCTTTCGAGCTCGGCCTGGGTCTGCTCAAGCTCGTTCTTGACGCCTCCAAACCGGTCTTCCAC
CTCGCGGACCTGGCGCTCAAGCCCGCGGGCTGAGCTGCGAGCGTC
Right flanking sequence: Indices 92788 -- 93287
GTCGTCCTCCGCCTGCGACACCCGCTTGGCCGCGGCCTGCGCCTGGAGCTCGGCCACCTTCACCT
TCTTGAAAAGCAGCGCGAGCTCGGCCTCGTGGCGCCGCTGGGTCACCGCGGCCACCTCCTTCTCC
GTCCGGAGCTCGCGCGCCTCGTGCTGCGCGGCCCGGCACTGGTCGTGGCGCTCACGGGCCTCCTG
GCGGGCCTGCTGGACGTCGGCGTCGCGCTTGGCGAGCTCGTCCCGCGCCGCCGCAAGCTCGGCCT
CGAGCCCGTGCGCGAGCTGCTCGTAGCTGGCGCGGATGGCCGCGAGCTCGTCGGGCGCGTAGCGG
AGCGCCGGGGTGAAATGCTGGGTGGGCTCGTCGATGGCGGCCTGGAGGTCGTCGGTGTGCGACAG
CCGCCGCGGCGGGTAGGCGTCCACCGCGGAGAACCGGTCCAGCGACCGCTGGCGGGGGGCGCCGT
CGGTGTCGTACACCTCGGAAAACTCCAGCTGGATGCGGTGGTCGC
Found at i:94080 original size:13 final size:13
Alignment explanation
Indices: 94062--94086 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94052 AGAGGCAGGT
94062 GGAGCAGGGGGGA
1 GGAGCAGGGGGGA
94075 GGAGCAGGGGGG
1 GGAGCAGGGGGG
94087 CCAGGGGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.72, T:0.00
Consensus pattern (13 bp):
GGAGCAGGGGGGA
Left flanking sequence: Indices 93562 -- 94061
GGTGGGTGCCAGCGCGTGCTGCAACGGGCGGGCGGTGTGGGTGCCGCGCTTGATGGGCGACGAGT
CCGCGCGGTCCCACGGCTCGTGCTTGTCGAACAGCGACCGGCGGCCGGCGACGGTGTGGGAGCCA
GCCAACGGGTGGTCGGAGGCGGGGGCCGCGCGCGGGGTGGTGGTGGGGCGCGAGTAGCGGGTGGT
GCTGTGGGAGGACGGTTCTTGCGTGGTGGGCAACGGGGTGGTGACCATGGTGCGGCGGCGGGTGA
TGTTTGCGCTGGAGGGGATGCCGATCGACGACGACGGCGGGCCGCGGAGCGGGGTGGTTTGCGAG
CGGTCCGGGTCGTCCAGCCGCGGACGGGCGCTGGCGGGGGCGGGTGGGGCGGGCATGTGCTCAGC
GTGTGTGTGGAGTCACCCGGGTGAAGGTGATGGTTAGGCTGGGTGGAAAGGTAAACAACGCGTTC
GCGCTGCGATCGACGCGTGAGGTGAGATAAGGGGAAGAGGCAGGT
Right flanking sequence: Indices 94087 -- 94586
CCAGGGGAAGAGGGGAGAAGTGGTAATGAAGGGGGTGGGTGGGATGAAGTACTGGGTTGGAGAGA
AGGCTCGTGCTGTGCAATTGCTCGGATCACTGGTGGTGATCCGGTGATAACTCCGAGGCGAGACA
AAATTTTCAGTGCGAGGAGGAAGGTGTGGTGGAAGTAGGCTAAGATGTGGGGTATGGTGTAGGTG
TGGGGTAGGGTGTGGATTGGGGTGTGGAATAAGGTGGGGTGTAGTGTGGGGTGTAGGGTCTCGTC
AATGGGGCTTATGTGACTTGGGGTATAGGACATGGTGTATGAGACACAGAGCTAGGTCCACGCGA
CATGGTTTTGTGGTCTAGTCTATGGGACATGTTTTAGGGGTTACGGTAGAGGATATGTTCAAGTT
GGGCATGGTAAATAGAACATGGTCTACTGGACATGGTCGATAGGACATGGTCACACGACAAGTTT
TCTCGGGTTAGATCCACGGGATATAGTCTCTAGTGCAGGGTCTAT
Found at i:95037 original size:13 final size:13
Alignment explanation
Indices: 94950--95029 Score: 92
Period size: 13 Copynumber: 6.2 Consensus size: 13
94940 GGCATAGGAT
94950 ATGGTCAATGGAC
1 ATGGTCAATGGAC
94963 ATGGTCAATGGA-
1 ATGGTCAATGGAC
*
94975 ATAGGTCGATGGAC
1 AT-GGTCAATGGAC
* * *
94989 ATGCTCAGTGAAC
1 ATGGTCAATGGAC
95002 ATGGTCAATGGAC
1 ATGGTCAATGGAC
*
95015 ATGGT-TATGGAC
1 ATGGTCAATGGAC
95027 ATG
1 ATG
95030 ATCGATGGGA
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
12 11 0.20
13 43 0.77
14 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (13 bp):
ATGGTCAATGGAC
Left flanking sequence: Indices 94450 -- 94949
GGTTACGGTAGAGGATATGTTCAAGTTGGGCATGGTAAATAGAACATGGTCTACTGGACATGGTC
GATAGGACATGGTCACACGACAAGTTTTCTCGGGTTAGATCCACGGGATATAGTCTCTAGTGCAG
GGTCTATGAATGGTAAATGGGAGATAGTCTATAGGGCCAAGTATACTGGAGATGCTTTAGGTCTC
CTGGACATAGTCTACGGACAAGGTCAAGTAGGGTATGGTCAAGTGAAAATTGGTGAAGTGAGAAT
CGGTCTAGTGGGACGTAGTCGAATGGGGCATGGTCAGTGGAACATTGTGAAGAAGACATGGCTAT
TGGGTTTGGTCTGGGCTATGGTTTCAGGATTAGGTCTGTGGAAATATCGGGGCATGGAAAGGACA
TGGTTTAAGGGATAAGAATGTGATTTTTGGGATTAGATCTACGGTGTTTAGAGGGACATGGTCCT
TGGAATACGGACCTTAAAATATTGTCATATAACATGGCATAGGAT
Right flanking sequence: Indices 95030 -- 95529
ATCGATGGGATATGGTAAATAAGACATGATCACGGGACATGGTTTACACTGTCAGTACGGACAAG
GTGTAGGGGCATTGTCAACGCGACATGGTCTAACTGACATGGTTTTCTGATATAGTCTATCTGAC
ATGGTCTATCGGACCAGTTCTATCGAACGTGGACATGATAGATGTGACTCTCGCGGTCAATACAT
CAGCCTACCCCTGACACCTTCCTCATACTCGTCCTTTTCTTTCTTCTTTCTTTCCTATTTAATAA
CATCTATGATACACTAGCCCCGGATCCGGAGCCCCGACGCCGGCACCCCCACGGTGGTGATCTTG
GTAATGGCACACACCTTGCCCTTGTACTCGGGCTTGTACACCGCCCCCACCAACTCCTCGTGCAC
CGAGGGCTCACCCGCGTAGATCGGGGTGTGGGTGGCCAGACACACGTCAAACTCGGCGTAGGGGT
CAAAGTCGATCTCCACCTCGTCGCGCGCCACCTGGTCCGCCCGCT
Found at i:95135 original size:14 final size:14
Alignment explanation
Indices: 95116--95169 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
95106 TTGTCAACGC
*
95116 GACATGGTCTAACT
1 GACATGGTCTATCT
*
95130 GACATGGT-TTTCT
1 GACATGGTCTATCT
* *
95143 GATATAGTCTATCT
1 GACATGGTCTATCT
95157 GACATGGTCTATC
1 GACATGGTCTATC
95170 GGACCAGTTC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
13 9 0.28
14 23 0.72
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (14 bp):
GACATGGTCTATCT
Left flanking sequence: Indices 94616 -- 95115
CCAAGTATACTGGAGATGCTTTAGGTCTCCTGGACATAGTCTACGGACAAGGTCAAGTAGGGTAT
GGTCAAGTGAAAATTGGTGAAGTGAGAATCGGTCTAGTGGGACGTAGTCGAATGGGGCATGGTCA
GTGGAACATTGTGAAGAAGACATGGCTATTGGGTTTGGTCTGGGCTATGGTTTCAGGATTAGGTC
TGTGGAAATATCGGGGCATGGAAAGGACATGGTTTAAGGGATAAGAATGTGATTTTTGGGATTAG
ATCTACGGTGTTTAGAGGGACATGGTCCTTGGAATACGGACCTTAAAATATTGTCATATAACATG
GCATAGGATATGGTCAATGGACATGGTCAATGGAATAGGTCGATGGACATGCTCAGTGAACATGG
TCAATGGACATGGTTATGGACATGATCGATGGGATATGGTAAATAAGACATGATCACGGGACATG
GTTTACACTGTCAGTACGGACAAGGTGTAGGGGCATTGTCAACGC
Right flanking sequence: Indices 95170 -- 95669
GGACCAGTTCTATCGAACGTGGACATGATAGATGTGACTCTCGCGGTCAATACATCAGCCTACCC
CTGACACCTTCCTCATACTCGTCCTTTTCTTTCTTCTTTCTTTCCTATTTAATAACATCTATGAT
ACACTAGCCCCGGATCCGGAGCCCCGACGCCGGCACCCCCACGGTGGTGATCTTGGTAATGGCAC
ACACCTTGCCCTTGTACTCGGGCTTGTACACCGCCCCCACCAACTCCTCGTGCACCGAGGGCTCA
CCCGCGTAGATCGGGGTGTGGGTGGCCAGACACACGTCAAACTCGGCGTAGGGGTCAAAGTCGAT
CTCCACCTCGTCGCGCGCCACCTGGTCCGCCCGCTGCTTGATGCGCTCGGCCTTCTCCACCAGCG
CACCGCGCCCGATCCGGATGATCTCCCCGGCAAAGTACAGCGCCAGAGCAAAGTTCTTGTGCTTG
AACAGCTGCAGCATCGCCACCTGCAACGCGTTGATCTTGTGGGCG
Found at i:99279 original size:17 final size:17
Alignment explanation
Indices: 99257--99289 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
99247 GGAAGGAAGT
99257 GGGTTGAGAGGGTGGTG
1 GGGTTGAGAGGGTGGTG
*
99274 GGGTTGAGAGGTTGGT
1 GGGTTGAGAGGGTGGT
99290 AGCTGTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.00, G:0.61, T:0.27
Consensus pattern (17 bp):
GGGTTGAGAGGGTGGTG
Left flanking sequence: Indices 98757 -- 99256
AACGGCTGGGTCGGGTGGAAGTCCAAGCAGCGCACCGGGCCCGTGTGTTCGTCAAACCGGTCGAT
AAGCGTGCCCATGCGGTAGTCCCACAACTGGATGGTGGACAGGTGGAGCGACACAAGCGCCCACG
GGCGTTTGGGGTGGAACGCCATCCCCTTGGCCCGCGACGTTTTCGACTCAAACTTGGTTAACATC
TTCATCTTGGCTGGGGGCACGAAGCGCGGTTTGCCGAGTGAGTGTCGTGGTGTTGAAAAATGGTC
GCCAATTCGTTACGTGTCAGCGAAAAGGTCACGTGCGCGACGCGTGAGTGGTGGCAGGGGGACGG
GGGGTTGTGGGGGCAATGGGGGTGTGGGAGGACTGGGTGGGTGGCCAATGGGTTGGGGTGGTGGT
GGTAGTGGTGGGGTTATAGTGGTTTAGCGTGTGTTTGTGGTGGGTGGGTGGTTGCTGACCCACGC
GTCGATGGGTGAGCGAGTGAGGAACGCAATTGGTGGGAAGGAAGT
Right flanking sequence: Indices 99290 -- 99789
AGCTGTTAATCTGTTGTGTTTTCACGTGGTTTGTTTACTGGCATACTTTTGTCTTTACTTGGATC
ATTCTTCTGTTTACCTGATCTGTCGTTTCACCTGCATAGGCCAGTGATGTGTACTGAGAGTAGTT
TCATGAAACCAAGCATCGCCTTATATGTGTCAGACTTTAAGATTTTCAGATATTCAGATTTTCCA
CTCTTCAGCTTCAATTACCAACTCCCCCTCCTTTCCTCGTCCTTTCTCTTCCATTTCTTCCCCAC
TTCATCACCACCTCACACAAACTTCTTTCTCGCACAACCAACATGCTTGCTGAGCCTACCGTGGT
GAAACCGCGCCAGTTCAAGTCGGACGTGCTGCCACCGGGCTTTCTGAGCACCTCCAAGAAGGTTG
CCACCAAGAAACCCCTCAGCGATGACCAGCTTGCCCAGCTCAAGACGAAAAAGGCGTGGGAGATC
GCCACCGGCCCCGCCAAACAGTTGCCGATGAACCTTGTTATGGGG
Found at i:100262 original size:12 final size:12
Alignment explanation
Indices: 100247--100343 Score: 56
Period size: 12 Copynumber: 7.8 Consensus size: 12
100237 CTTCTTTTCA
100247 TCCTTTTCCTCT
1 TCCTTTTCCTCT
* *
100259 TCCTCCTT-CTTT
1 TCCT-TTTCCTCT
*
100271 TCCTCTTCCTCCT
1 TCCTTTTCCT-CT
100284 T-CTTTTCCTCTTCT
1 TCCTTTT-C-C-TCT
*
100298 TCCTTCTCCTCT
1 TCCTTTTCCTCT
* *
100310 TCCTTCTCCGCT
1 TCCTTTTCCTCT
*
100322 TCCTTCTTCTTC-
1 TCCTT-TTCCTCT
100334 TCCTTTTCCT
1 TCCTTTTCCT
100344 TCTTTTCCTG
Statistics
Matches: 67, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
11 7 0.10
12 41 0.61
13 9 0.13
14 5 0.07
15 5 0.07
ACGTcount: A:0.00, C:0.44, G:0.01, T:0.55
Consensus pattern (12 bp):
TCCTTTTCCTCT
Left flanking sequence: Indices 99747 -- 100246
CACCGGCCCCGCCAAACAGTTGCCGATGAACCTTGTTATGGGGTACATGACGGGTAACTCGCTCC
AGATCATCCCCATCACCACCACGTTTATGATTTTGTTGAACCCGCTCAAAGCGATCTTCTCCGAG
ACCTCCAAGGCGTTCGCGGGCTTGGACACCGGCGACCAGACCCAGTTGATGGCGGCGAAGTTGGT
GTTTGTGGTGTGCCAGTTGGCCAACATGGCGATTGGCGTGTATAAATTATACAAGATGGGGCTCA
TCCCCCATGCCCCCGCCGACTGGTTGGCGTGGAAGCTGCCGGTTGTGTTTGAGCAGGTGGTGAAC
GTTTTGAACTAATACGATTAATGAACATTAATAGGAATAGTGTAGGTGTGGTTACGTGTTGTTCG
TTACTCTATAATCGTGATCGTGACTATTTATCGTGGGAGTGAGGTTGTCCTCAGAAGTCGTCCTC
AGAAGCTTCCACTTTTCCTAATTCTCGTCTCCTTCCTTCTTTTCA
Right flanking sequence: Indices 100344 -- 100843
TCTTTTCCTGGGCTGCCTCTGCGGAAACACCCTTCTCATAAATCTGTTGCAAGTTAAACTTCTCG
TACTCCAAGTACTTGCTCACCACACCCATGCCAATGTTGTTCTTGTAGCAGGTGACTAGAATAAG
CTTCTCGTACTCCTTCAAATCCACCTTGTGGCCGTGGTCGCGTCCGACACACTCAGCAATCGCCC
GGATCATCTGGTCCTTGGGAATCAGGTTAAAGTTCCGTCTGTCCACCTGAATGGCGTACTTGACG
GGTTGCTGGTTCTCAGCGTGGAAGTGGGGCGCCAACACCTTCTTGGCCAACTTGCGCAACTCGTC
CATGCTGGCGGAAACCAGCGCAGTCACGGGTGCCAACTTGTTCGTCAGGCGCGTGGTCTTGACCT
TGGTCTCCACCAACTCCTCCACGATCCCCTGGACCAACTTTTCCGGGTCGATGGGCCGCCTGGTT
TTGATAAACACGAGACAGGGACAGTCCAAGGTAATGGGCTTGATC
Found at i:100290 original size:45 final size:44
Alignment explanation
Indices: 100235--100346 Score: 117
Period size: 45 Copynumber: 2.5 Consensus size: 44
100225 CTCGTCTCCT
* *
100235 TCCTTCTTTTCATCCTTTTCC-TCTTCCTCCTT-CTTTTCCTCTTCC
1 TCCTTCTTTTC-TCCTTTTCCTTC-TCCT-CTTCCTTCTCCGCTTCC
100280 TCCTTCTTTTC-CTCTTCTTCCTTCTCCTCTTCCTTCTCCGCTTCC
1 TCCTTCTTTTCTC-CTT-TTCCTTCTCCTCTTCCTTCTCCGCTTCC
*
100325 TTCTTC--TTCTCCTTTTCCTTCT
1 TCCTTCTTTTCTCCTTTTCCTTCT
100347 TTTCCTGGGC
Statistics
Matches: 59, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
42 8 0.14
43 7 0.12
44 7 0.12
45 35 0.59
46 2 0.03
ACGTcount: A:0.01, C:0.43, G:0.01, T:0.55
Consensus pattern (44 bp):
TCCTTCTTTTCTCCTTTTCCTTCTCCTCTTCCTTCTCCGCTTCC
Left flanking sequence: Indices 99735 -- 100234
GTGGGAGATCGCCACCGGCCCCGCCAAACAGTTGCCGATGAACCTTGTTATGGGGTACATGACGG
GTAACTCGCTCCAGATCATCCCCATCACCACCACGTTTATGATTTTGTTGAACCCGCTCAAAGCG
ATCTTCTCCGAGACCTCCAAGGCGTTCGCGGGCTTGGACACCGGCGACCAGACCCAGTTGATGGC
GGCGAAGTTGGTGTTTGTGGTGTGCCAGTTGGCCAACATGGCGATTGGCGTGTATAAATTATACA
AGATGGGGCTCATCCCCCATGCCCCCGCCGACTGGTTGGCGTGGAAGCTGCCGGTTGTGTTTGAG
CAGGTGGTGAACGTTTTGAACTAATACGATTAATGAACATTAATAGGAATAGTGTAGGTGTGGTT
ACGTGTTGTTCGTTACTCTATAATCGTGATCGTGACTATTTATCGTGGGAGTGAGGTTGTCCTCA
GAAGTCGTCCTCAGAAGCTTCCACTTTTCCTAATTCTCGTCTCCT
Right flanking sequence: Indices 100347 -- 100846
TTTCCTGGGCTGCCTCTGCGGAAACACCCTTCTCATAAATCTGTTGCAAGTTAAACTTCTCGTAC
TCCAAGTACTTGCTCACCACACCCATGCCAATGTTGTTCTTGTAGCAGGTGACTAGAATAAGCTT
CTCGTACTCCTTCAAATCCACCTTGTGGCCGTGGTCGCGTCCGACACACTCAGCAATCGCCCGGA
TCATCTGGTCCTTGGGAATCAGGTTAAAGTTCCGTCTGTCCACCTGAATGGCGTACTTGACGGGT
TGCTGGTTCTCAGCGTGGAAGTGGGGCGCCAACACCTTCTTGGCCAACTTGCGCAACTCGTCCAT
GCTGGCGGAAACCAGCGCAGTCACGGGTGCCAACTTGTTCGTCAGGCGCGTGGTCTTGACCTTGG
TCTCCACCAACTCCTCCACGATCCCCTGGACCAACTTTTCCGGGTCGATGGGCCGCCTGGTTTTG
ATAAACACGAGACAGGGACAGTCCAAGGTAATGGGCTTGATCATC
Found at i:100298 original size:21 final size:18
Alignment explanation
Indices: 100249--100304 Score: 103
Period size: 18 Copynumber: 3.1 Consensus size: 18
100239 TCTTTTCATC
100249 CTTTTCCTCTTCCTCCTT
1 CTTTTCCTCTTCCTCCTT
100267 CTTTTCCTCTTCCTCCTT
1 CTTTTCCTCTTCCTCCTT
*
100285 CTTTTCCTCTTCTTCCTT
1 CTTTTCCTCTTCCTCCTT
100303 CT
1 CT
100305 CCTCTTCCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (18 bp):
CTTTTCCTCTTCCTCCTT
Left flanking sequence: Indices 99749 -- 100248
CCGGCCCCGCCAAACAGTTGCCGATGAACCTTGTTATGGGGTACATGACGGGTAACTCGCTCCAG
ATCATCCCCATCACCACCACGTTTATGATTTTGTTGAACCCGCTCAAAGCGATCTTCTCCGAGAC
CTCCAAGGCGTTCGCGGGCTTGGACACCGGCGACCAGACCCAGTTGATGGCGGCGAAGTTGGTGT
TTGTGGTGTGCCAGTTGGCCAACATGGCGATTGGCGTGTATAAATTATACAAGATGGGGCTCATC
CCCCATGCCCCCGCCGACTGGTTGGCGTGGAAGCTGCCGGTTGTGTTTGAGCAGGTGGTGAACGT
TTTGAACTAATACGATTAATGAACATTAATAGGAATAGTGTAGGTGTGGTTACGTGTTGTTCGTT
ACTCTATAATCGTGATCGTGACTATTTATCGTGGGAGTGAGGTTGTCCTCAGAAGTCGTCCTCAG
AAGCTTCCACTTTTCCTAATTCTCGTCTCCTTCCTTCTTTTCATC
Right flanking sequence: Indices 100305 -- 100804
CCTCTTCCTTCTCCGCTTCCTTCTTCTTCTCCTTTTCCTTCTTTTCCTGGGCTGCCTCTGCGGAA
ACACCCTTCTCATAAATCTGTTGCAAGTTAAACTTCTCGTACTCCAAGTACTTGCTCACCACACC
CATGCCAATGTTGTTCTTGTAGCAGGTGACTAGAATAAGCTTCTCGTACTCCTTCAAATCCACCT
TGTGGCCGTGGTCGCGTCCGACACACTCAGCAATCGCCCGGATCATCTGGTCCTTGGGAATCAGG
TTAAAGTTCCGTCTGTCCACCTGAATGGCGTACTTGACGGGTTGCTGGTTCTCAGCGTGGAAGTG
GGGCGCCAACACCTTCTTGGCCAACTTGCGCAACTCGTCCATGCTGGCGGAAACCAGCGCAGTCA
CGGGTGCCAACTTGTTCGTCAGGCGCGTGGTCTTGACCTTGGTCTCCACCAACTCCTCCACGATC
CCCTGGACCAACTTTTCCGGGTCGATGGGCCGCCTGGTTTTGATA
Found at i:100314 original size:30 final size:30
Alignment explanation
Indices: 100235--100352 Score: 95
Period size: 30 Copynumber: 4.0 Consensus size: 30
100225 CTCGTCTCCT
*
100235 TCCTTCTT-TTCATCCTTTTCC-TC--TTCC
1 TCCTTCTTCTTC-TCCTCTTCCTTCTTTTCC
* *
100262 TCCTTCTT-TTCCTCTTCCTCCTTCTTTTCC
1 TCCTTCTTCTT-CTCCTCTTCCTTCTTTTCC
*** *
100292 T-CTTCTTCCTTCTCCTCTTCCTTCTCCGCT
1 TCCTTCTT-CTTCTCCTCTTCCTTCTTTTCC
*
100322 TCCTTCTTCTTCTCCTTTTCCTTCTTTTCC
1 TCCTTCTTCTTCTCCTCTTCCTTCTTTTCC
100352 T
1 T
100353 GGGCTGCCTC
Statistics
Matches: 70, Mismatches: 14, Indels: 11
0.74 0.15 0.12
Matches are distributed among these distances:
27 16 0.23
28 3 0.04
29 6 0.09
30 37 0.53
31 8 0.11
ACGTcount: A:0.01, C:0.42, G:0.01, T:0.56
Consensus pattern (30 bp):
TCCTTCTTCTTCTCCTCTTCCTTCTTTTCC
Left flanking sequence: Indices 99735 -- 100234
GTGGGAGATCGCCACCGGCCCCGCCAAACAGTTGCCGATGAACCTTGTTATGGGGTACATGACGG
GTAACTCGCTCCAGATCATCCCCATCACCACCACGTTTATGATTTTGTTGAACCCGCTCAAAGCG
ATCTTCTCCGAGACCTCCAAGGCGTTCGCGGGCTTGGACACCGGCGACCAGACCCAGTTGATGGC
GGCGAAGTTGGTGTTTGTGGTGTGCCAGTTGGCCAACATGGCGATTGGCGTGTATAAATTATACA
AGATGGGGCTCATCCCCCATGCCCCCGCCGACTGGTTGGCGTGGAAGCTGCCGGTTGTGTTTGAG
CAGGTGGTGAACGTTTTGAACTAATACGATTAATGAACATTAATAGGAATAGTGTAGGTGTGGTT
ACGTGTTGTTCGTTACTCTATAATCGTGATCGTGACTATTTATCGTGGGAGTGAGGTTGTCCTCA
GAAGTCGTCCTCAGAAGCTTCCACTTTTCCTAATTCTCGTCTCCT
Right flanking sequence: Indices 100353 -- 100852
GGGCTGCCTCTGCGGAAACACCCTTCTCATAAATCTGTTGCAAGTTAAACTTCTCGTACTCCAAG
TACTTGCTCACCACACCCATGCCAATGTTGTTCTTGTAGCAGGTGACTAGAATAAGCTTCTCGTA
CTCCTTCAAATCCACCTTGTGGCCGTGGTCGCGTCCGACACACTCAGCAATCGCCCGGATCATCT
GGTCCTTGGGAATCAGGTTAAAGTTCCGTCTGTCCACCTGAATGGCGTACTTGACGGGTTGCTGG
TTCTCAGCGTGGAAGTGGGGCGCCAACACCTTCTTGGCCAACTTGCGCAACTCGTCCATGCTGGC
GGAAACCAGCGCAGTCACGGGTGCCAACTTGTTCGTCAGGCGCGTGGTCTTGACCTTGGTCTCCA
CCAACTCCTCCACGATCCCCTGGACCAACTTTTCCGGGTCGATGGGCCGCCTGGTTTTGATAAAC
ACGAGACAGGGACAGTCCAAGGTAATGGGCTTGATCATCTCCTTC
Found at i:100333 original size:18 final size:19
Alignment explanation
Indices: 100307--100347 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
100297 TTCCTTCTCC
100307 TCTTCCTTCTCCGCTTCCT
1 TCTTCCTTCTCCGCTTCCT
**
100326 TCTT-CTTCTCCTTTTCCT
1 TCTTCCTTCTCCGCTTCCT
100344 TCTT
1 TCTT
100348 TTCCTGGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.00, C:0.41, G:0.02, T:0.56
Consensus pattern (19 bp):
TCTTCCTTCTCCGCTTCCT
Left flanking sequence: Indices 99807 -- 100306
GCTCCAGATCATCCCCATCACCACCACGTTTATGATTTTGTTGAACCCGCTCAAAGCGATCTTCT
CCGAGACCTCCAAGGCGTTCGCGGGCTTGGACACCGGCGACCAGACCCAGTTGATGGCGGCGAAG
TTGGTGTTTGTGGTGTGCCAGTTGGCCAACATGGCGATTGGCGTGTATAAATTATACAAGATGGG
GCTCATCCCCCATGCCCCCGCCGACTGGTTGGCGTGGAAGCTGCCGGTTGTGTTTGAGCAGGTGG
TGAACGTTTTGAACTAATACGATTAATGAACATTAATAGGAATAGTGTAGGTGTGGTTACGTGTT
GTTCGTTACTCTATAATCGTGATCGTGACTATTTATCGTGGGAGTGAGGTTGTCCTCAGAAGTCG
TCCTCAGAAGCTTCCACTTTTCCTAATTCTCGTCTCCTTCCTTCTTTTCATCCTTTTCCTCTTCC
TCCTTCTTTTCCTCTTCCTCCTTCTTTTCCTCTTCTTCCTTCTCC
Right flanking sequence: Indices 100348 -- 100847
TTCCTGGGCTGCCTCTGCGGAAACACCCTTCTCATAAATCTGTTGCAAGTTAAACTTCTCGTACT
CCAAGTACTTGCTCACCACACCCATGCCAATGTTGTTCTTGTAGCAGGTGACTAGAATAAGCTTC
TCGTACTCCTTCAAATCCACCTTGTGGCCGTGGTCGCGTCCGACACACTCAGCAATCGCCCGGAT
CATCTGGTCCTTGGGAATCAGGTTAAAGTTCCGTCTGTCCACCTGAATGGCGTACTTGACGGGTT
GCTGGTTCTCAGCGTGGAAGTGGGGCGCCAACACCTTCTTGGCCAACTTGCGCAACTCGTCCATG
CTGGCGGAAACCAGCGCAGTCACGGGTGCCAACTTGTTCGTCAGGCGCGTGGTCTTGACCTTGGT
CTCCACCAACTCCTCCACGATCCCCTGGACCAACTTTTCCGGGTCGATGGGCCGCCTGGTTTTGA
TAAACACGAGACAGGGACAGTCCAAGGTAATGGGCTTGATCATCT
Found at i:100346 original size:12 final size:12
Alignment explanation
Indices: 100295--100328 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
100285 CTTTTCCTCT
100295 TCTTCCTTCTCC
1 TCTTCCTTCTCC
100307 TCTTCCTTCTCC
1 TCTTCCTTCTCC
*
100319 GCTTCCTTCT
1 TCTTCCTTCT
100329 TCTTCTCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (12 bp):
TCTTCCTTCTCC
Left flanking sequence: Indices 99795 -- 100294
GACGGGTAACTCGCTCCAGATCATCCCCATCACCACCACGTTTATGATTTTGTTGAACCCGCTCA
AAGCGATCTTCTCCGAGACCTCCAAGGCGTTCGCGGGCTTGGACACCGGCGACCAGACCCAGTTG
ATGGCGGCGAAGTTGGTGTTTGTGGTGTGCCAGTTGGCCAACATGGCGATTGGCGTGTATAAATT
ATACAAGATGGGGCTCATCCCCCATGCCCCCGCCGACTGGTTGGCGTGGAAGCTGCCGGTTGTGT
TTGAGCAGGTGGTGAACGTTTTGAACTAATACGATTAATGAACATTAATAGGAATAGTGTAGGTG
TGGTTACGTGTTGTTCGTTACTCTATAATCGTGATCGTGACTATTTATCGTGGGAGTGAGGTTGT
CCTCAGAAGTCGTCCTCAGAAGCTTCCACTTTTCCTAATTCTCGTCTCCTTCCTTCTTTTCATCC
TTTTCCTCTTCCTCCTTCTTTTCCTCTTCCTCCTTCTTTTCCTCT
Right flanking sequence: Indices 100329 -- 100828
TCTTCTCCTTTTCCTTCTTTTCCTGGGCTGCCTCTGCGGAAACACCCTTCTCATAAATCTGTTGC
AAGTTAAACTTCTCGTACTCCAAGTACTTGCTCACCACACCCATGCCAATGTTGTTCTTGTAGCA
GGTGACTAGAATAAGCTTCTCGTACTCCTTCAAATCCACCTTGTGGCCGTGGTCGCGTCCGACAC
ACTCAGCAATCGCCCGGATCATCTGGTCCTTGGGAATCAGGTTAAAGTTCCGTCTGTCCACCTGA
ATGGCGTACTTGACGGGTTGCTGGTTCTCAGCGTGGAAGTGGGGCGCCAACACCTTCTTGGCCAA
CTTGCGCAACTCGTCCATGCTGGCGGAAACCAGCGCAGTCACGGGTGCCAACTTGTTCGTCAGGC
GCGTGGTCTTGACCTTGGTCTCCACCAACTCCTCCACGATCCCCTGGACCAACTTTTCCGGGTCG
ATGGGCCGCCTGGTTTTGATAAACACGAGACAGGGACAGTCCAAG
Found at i:114343 original size:14 final size:14
Alignment explanation
Indices: 114324--114358 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
114314 TGGCCATGGT
114324 GTGCTTCGGTGGAG
1 GTGCTTCGGTGGAG
114338 GTGCTTCGGTGGAG
1 GTGCTTCGGTGGAG
114352 GTGCTTC
1 GTGCTTC
114359 AGCTGGACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.06, C:0.17, G:0.46, T:0.31
Consensus pattern (14 bp):
GTGCTTCGGTGGAG
Left flanking sequence: Indices 113824 -- 114323
ACCCAGAACATCAGCCACTTCGAGATGAGGTACGCAGGCTGGTTACGGGCCACGTAGTACCCCCG
GATACGCCCACCCAAGAGCCACAACACATGGCCAGTAGCAAGCATCACCAGCACAAGGAACCGCA
AGAACTCGGGCAAGTTGCCGTGCCCGACACAGTTGTAGGTCCAGGGACAGTGGTGGTCCATCACC
ATCACACACTTCTGGCACGTTTTGCAATGGTGGGTGCGTGGGGGTTTGTAGACATGGCACTTCTG
GCACCAACGTTTCCACTGGCCAGGGGGTGGTTTGTAGTCTTTCGGAGGCCTGCCTGGGCTCTTGA
AGATCGCCAACGCGTAGGTGACCCACACCATGGTGAGGAGGACCTGGTGGGTGATCTGCGCCAGC
TTGGGCTCGGTGTAGAACAAAAGGTAGTGGCCACCGTAGCCAAGAAAGGCAATGATGGCACAGGG
GATCGCAACCCCGAGAAGCGGCCACTTCAACTGGATGGCCATGGT
Right flanking sequence: Indices 114359 -- 114858
AGCTGGACCACCGATCGCGTTTTGTGGAATGGCTCGTAACCAGAATTCGACGAGGAACGTGTTTT
CGTCATCTTCAAATACATAACCAGGCTCATTCTCGACCGAGCCTATCTCTAATCGTATCTATTCA
TTTCGTACGTAACTATTCCTCCATGTCTTCGTCGTCATCCTCGTCCTCGGCCGCCGCACGCGCTG
CCTTCACCTTCTCCTCGGGAACAAACTGGTGGCGCTTGGTGGTGGTGTCGATAAACGACATCTCC
AACTCGTAGTCCTTGTCCTTGTTGTCCTCGTGCGCCAAGTTGATGATCTTGGCCGCCACCTTGAT
CGCCTCCTCCACCGTGAGGTTCTCGTAGTCGAGCTTTTCCAACTCCAGCTTGGCAATCTGGCGGC
CCTTGCCCGTGGCAGCACCCAGGTAACCCCAGCAGGTCCCGCTGGGCTCAATCATGTACAAGTGA
GGGCCGTTGTCGTCCACACCGCCCACAATCAGCACCACGCCAAAC
Found at i:117640 original size:20 final size:18
Alignment explanation
Indices: 117623--117657 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
117613 CTCGTGGTAC
117623 CGCTCGGGCAGCCGTGGT
1 CGCTCGGGCAGCCGTGGT
*
117641 CGTTCGGGCAGCCGTGG
1 CGCTCGGGCAGCCGTGG
117658 GCGGTCAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.31, G:0.46, T:0.17
Consensus pattern (18 bp):
CGCTCGGGCAGCCGTGGT
Left flanking sequence: Indices 117123 -- 117622
TTTCGAACTGCTCGAGGTTCTCGTACAAGTCCTCGTTGAGCCTGAACACCTCTTCGTAGTTGCGC
TGCAACAGCTGGTAGTCCTCGCCCGCGGCGGACATCCCGGCTCCGTCGCGCAGAATGAGCGTCTG
CACGAACTGCTTGAAGAACTTGAGCTGGATTTTGTAGCTGGTGATCTCCTTGTTGAGGTCTTCCA
CCCGCTGGGCTGGGGTCTCGCTGATGGTGTGGGGGATCAGGTAGCGGTGTTTTTGTTTGGTCAGA
GCCATCGCCCACGGCAGGGTGTTGGGCAGCCGCAGTTTGCGCTTCAGGTAGTCTGGGGTGTTGAC
TGCCAACGGCGTGATCTTCTTTTTGAGGTTGATTTCGTCCAACAGGGTTGTGAACCGGTGGCGGG
CCACCACCTCGTCCGGGTTGCGCCACGGGAGGCTCAGCTGCAGCCCGTGCGAGCTGGTGGACACC
ACGCTCATCCGGTGCAGCCGCTGGGGCACGTGTGTCTCGTGGTAC
Right flanking sequence: Indices 117658 -- 118157
GCGGTCAAACAGCCGGTCGAGCAGCCGGAGCAGCCGCTGGGGCAGTCTCGGGGGCAGACGTGGGT
ACGACCGCAGCAGGCGTGGCGACGGGTGGGTGCGGTCGCGGTCGTCGTGAGCCAGCTTGATCGAT
GCCGGCCTGGGCTCGGGAGTCTTGTTGAGGCCCACGATCCCGCCGCGGACGGGGCTGACACGCAC
AGGGGTGGCCGCTGGTGGCTGGCGGGCGGGCAGAGCTGCTCCGTTTTCGCGTGCTGGCGACCGTC
GCGCGTGGGTGGGGGTGTCCTCGTCCGACTCGAGCACCAGCTCCATAAAGAGCGAGTCGTCCTCG
ACCATGGTGGAATTATGTAGGGCCGGGTGGAGAATCAGGTGGCGCAACGACTCCACGCTCTGGGC
CAACCGCGAGCTGAGCCGTTCCGCCAATTGGGCGTCGGGAGTCTCCGTCATATCCGGTGGACTAT
GGACAGGTTGCAGTTTTTTTTTGTTTTTGGTTGTGTCGTTGTGTG
Found at i:126039 original size:3 final size:3
Alignment explanation
Indices: 126031--126059 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
126021 CGCCGGAGCG
126031 GCA GCA GCA GCA GCA GCA GCA GCA GCA GC
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GC
126060 CGGGTTCACG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.34, G:0.34, T:0.00
Consensus pattern (3 bp):
GCA
Left flanking sequence: Indices 125531 -- 126030
CATTTGCGCGCACGTTGAATAATTGAGCCACCACACATCCGATGCTAGGGACGGCCACTCAGAGC
GCTGTGGGGCTGCTTACCGCGCTGCCGCCCGCCGACGGCGCCATTGACGACGGGTACAAGCGCCG
GTTCGAGCACAACGTGTCGGTGGTGCTGAAGCTCGACCACGAAGCCACCGCGAGCCACCAGTTGC
GGGTGCTCAAGTTCGACGAGGTCCACTTGCTGAACACGATTCTCCGCCAGACCGACATCACCAAC
AACTACATCGAGCGCGTGGTGGCCGAGGACATCTCGCTGCGCAACAACAAGATCTCCGACACCAA
CAAGAACAAGGAGTTGCACTACTTGGACCCGACGAAGCCGTTGCACCACAACACCATCCGCGGCA
AGGAGTACCGGTGGGGCCTGACCCGCGAGATCAACAAGGTGGAGCTGAAGCTGCGCAAACGGCGG
CCCAACATCGCCGCGCTGGCCACCGCGTACGGGGGCGCCGGAGCG
Right flanking sequence: Indices 126060 -- 126559
CGGGTTCACGCTGTCGCCACTGAAACGCGCCCGCCCGCTCTTGGCCCCGCTGCCCAAACGGCGCA
AAACCCTGCCCGAGTACCACCTCGAGGACTTTGACGACGACGACGAGCTTTTGGACACCAACGGC
GACGCCACCCTCGAAGAAAAACAGGTGATGAAGCAGTACGACGCCATCTACATCCTGATCTGGAA
GGACATGCTGCGCAAGGACGGGCCCAAGGTGCTGCGGATGTTGCTGCAGGCAACGCAGGCCCGGA
TGATCAACATGAAGAAGACGGCGATTCTCGCGGCGCGTGAGGCCAAGCGGTGGCAGTTGCGCAAC
AACAAGGGCGCCAAGGACTTGACCACCAAGTCGCGGCGTGCCATGCGCGAGATGTTCAACTTCTG
GAAGCGCAACGAGCGGGTGGAGCGCGAGCAGAAGAAGCGCTTGGAGCGCGACGTGTTGGACAAGG
CCAAGCGCGAGGAAGAGGAGCGCGAGGCCAAGCGCCAGCTGCGCA
Found at i:145887 original size:21 final size:21
Alignment explanation
Indices: 145863--145911 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
145853 CGGTGAGAAG
**
145863 AAGGAGGATGACAAGGACAAC
1 AAGGAGGACAACAAGGACAAC
* * *
145884 AAGGACGACAAGAAGGACGAC
1 AAGGAGGACAACAAGGACAAC
145905 AAGGAGG
1 AAGGAGG
145912 CTGCTGACCT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.14, G:0.37, T:0.02
Consensus pattern (21 bp):
AAGGAGGACAACAAGGACAAC
Left flanking sequence: Indices 145363 -- 145862
AAGTGGTTGCAAAAAAATCATTATTTAAGTAGAGCCAAATCCTCGGAATTTCTTCATCAAACAAC
ATGAAGTTCACTTCTACTTTTACTTTAGCTACCCTTCTTTCGATCGCTGCCGCGGCCAAGACCTT
TGGCGTGGTTTCGATTCGTTCGGGGTCTCAATTCCAATACGCTGAGCTCACCCAGAAATCCGACT
CGGTTTTCGTGGGCAAGACTGGCGACGCTATCAAGTTTGTCTTGAACGATGACGGCTCACTCGTT
GACTCTTCCACCAACAAGTACGTTGTGGTTGGCGACGACAAGAAGGTGTCCGAGAGCGACAAGGC
TGATGGCAGCAAGTGGTCGGTTGACGACAACCGCTTGAAGCTCAACGACAAGGAGTATTGGTACG
CCTGCGAGGACGGCCTGAACTACAAGTTGAGCACTGGCGACTGCGGTACTGGCATCGCCCTCCAC
ACTGTTGATGAGAAGGAGGCCGATGAGGTCAAGCCCGGTGAGAAG
Right flanking sequence: Indices 145912 -- 146411
CTGCTGACCTCACTGCTGTTGAGTTCGACGTGGCCATCATCCGCTCCGGCTCCAAGTTCCAGTAC
GCCAACCTCAAGGCTAAGGACGGCAAGGTCTACGTTGGTGGCAACGTGGGTGAGACCATCAAGTT
TGTCAGAAACAACGATGGCACCATTGGTGACGCCAACACTGGCTTGTTCGTCTCCCGTAACGGTG
ACCTGGAGTTGGAGGAGACCGACGGCAACAACCCCACCACTATGTACATCTCCGAGGGCTACCTT
TACGTCCAGGACGAGAAGGACACTCCCTGGGTTGTCTGCCCCATTGGCAACGAGCAGTACCAGTT
GAAGTCTGGTGGCCGTGACCGTTGCGAGGGCGGCACTGACGTGGTGTTGCGTGTTGGTTCCCAGA
AGGATGCTAAGCCTGTGAAGCCCGTTGAGGTTGCCAACAACGGTAAGTTCAAGGTCTTCGCCAAC
GTCGATGGCAAGAAGATCCCCATCATTAAGAGCAAGGACCACCCT
Found at i:145907 original size:12 final size:12
Alignment explanation
Indices: 145878--145907 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
145868 GGATGACAAG
*
145878 GACAACAAGGAC
1 GACAAGAAGGAC
145890 GACAAGAAGGAC
1 GACAAGAAGGAC
145902 GACAAG
1 GACAAG
145908 GAGGCTGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.20, G:0.30, T:0.00
Consensus pattern (12 bp):
GACAAGAAGGAC
Left flanking sequence: Indices 145378 -- 145877
AATCATTATTTAAGTAGAGCCAAATCCTCGGAATTTCTTCATCAAACAACATGAAGTTCACTTCT
ACTTTTACTTTAGCTACCCTTCTTTCGATCGCTGCCGCGGCCAAGACCTTTGGCGTGGTTTCGAT
TCGTTCGGGGTCTCAATTCCAATACGCTGAGCTCACCCAGAAATCCGACTCGGTTTTCGTGGGCA
AGACTGGCGACGCTATCAAGTTTGTCTTGAACGATGACGGCTCACTCGTTGACTCTTCCACCAAC
AAGTACGTTGTGGTTGGCGACGACAAGAAGGTGTCCGAGAGCGACAAGGCTGATGGCAGCAAGTG
GTCGGTTGACGACAACCGCTTGAAGCTCAACGACAAGGAGTATTGGTACGCCTGCGAGGACGGCC
TGAACTACAAGTTGAGCACTGGCGACTGCGGTACTGGCATCGCCCTCCACACTGTTGATGAGAAG
GAGGCCGATGAGGTCAAGCCCGGTGAGAAGAAGGAGGATGACAAG
Right flanking sequence: Indices 145908 -- 146407
GAGGCTGCTGACCTCACTGCTGTTGAGTTCGACGTGGCCATCATCCGCTCCGGCTCCAAGTTCCA
GTACGCCAACCTCAAGGCTAAGGACGGCAAGGTCTACGTTGGTGGCAACGTGGGTGAGACCATCA
AGTTTGTCAGAAACAACGATGGCACCATTGGTGACGCCAACACTGGCTTGTTCGTCTCCCGTAAC
GGTGACCTGGAGTTGGAGGAGACCGACGGCAACAACCCCACCACTATGTACATCTCCGAGGGCTA
CCTTTACGTCCAGGACGAGAAGGACACTCCCTGGGTTGTCTGCCCCATTGGCAACGAGCAGTACC
AGTTGAAGTCTGGTGGCCGTGACCGTTGCGAGGGCGGCACTGACGTGGTGTTGCGTGTTGGTTCC
CAGAAGGATGCTAAGCCTGTGAAGCCCGTTGAGGTTGCCAACAACGGTAAGTTCAAGGTCTTCGC
CAACGTCGATGGCAAGAAGATCCCCATCATTAAGAGCAAGGACCA
Found at i:158153 original size:12 final size:12
Alignment explanation
Indices: 158136--158182 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
158126 GTCCATCAAG
158136 AAGGAGGAGCCT
1 AAGGAGGAGCCT
*
158148 AAGGAGGAACCT
1 AAGGAGGAGCCT
158160 AAGGAGGAGCCT
1 AAGGAGGAGCCT
*
158172 AAGGAAGAGCC
1 AAGGAGGAGCC
158183 CAAGAGAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.38, C:0.17, G:0.38, T:0.06
Consensus pattern (12 bp):
AAGGAGGAGCCT
Left flanking sequence: Indices 157636 -- 158135
CCAAGGAGCTGTCCAACTCCAAGCACGACGACGACGAGCCCAAGAGCATTGGAGACCGGATGAAG
GCGTACAAGGACAACGACGACGGGCGGTTGACCGAGCTTCCCAAGCCCAAGATCAACAACACCGT
GGGGTCGCGGTTCAAGCCGGCTCCTTCGACTCCGGGCCAGGCCCAGTTTGGTGCCAAGCCGCAGG
GTGCCGCCTCCGACAGCCGCAAGGACCACTTGGTGGGCGGTTTGCTGCGTGACTTTGGCGGGGCC
GACGGGCTCACTCCCGCCCAGCAGTGGGCGTTGAAGAAGGGCAAGTACAAGAAGGTGGAGGGCGA
TGCCGACGACGTGGCGCTGGGGGTGGCCAACACCTCGTTGGAGGACAAGGAGGAGCACGTGGTGA
AGCCGTCGAGCTACACCCCGCCGGTGGCTGACGAGGAGGACGAGGACCAGGACCACGAGGACGAA
AAGGAGGACGAGTCCCCGATCCCCGCGTCGTTGCGGTCCATCAAG
Right flanking sequence: Indices 158183 -- 158682
CAAGAGAAACTTGCCTCCTCCGCCGCCTGCCCGCGAGGAAGCGCAGCCCCAGCGCAACTTGCCGC
CGCCGCCGCCCGCCAGAGACGAGCCCAAGGAGGAGGCCAAGGAAGAGGCACCCAAGCTCCCGCAG
CGGGACGAACCCAAGAAGGACGCTAAGCTGCTGATCACCGCCACCGCCGAGTACGAGCACGTGCC
TGAGGAGGGTGAGGACAACGAGTTGGCGTTTGACGAGGGCGACACCATCGTGGACATTGAGAAGA
TCGAGGGCGAGGAGTGGTGGCATGGCACCAACAAGCGCACTGGTGAGTCGGGCTTGTTCCCTGCG
AACTACGTCACCATCAACGAGGACGGTGACTCGGGCAACTCTGCCCCTGCGGCTCCTTCGTTGCC
CGCTAGAAACGAGCCTGCTCCTGCTGCCGACTCGGGCAAGCTGGCTGTGGCTCTCTACGACTACG
AGAAGGACGAGGAGAACGAGATCGGCTTCGCTGAAGGCGACAAGA
Found at i:166168 original size:21 final size:21
Alignment explanation
Indices: 166144--166189 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
166134 AACCACAACA
* *
166144 CTGCCCAGGCCGATTTGCACT
1 CTGCCAAGGCCGACTTGCACT
*
166165 CTGCCAAGGCTGACTTGCACT
1 CTGCCAAGGCCGACTTGCACT
166186 CTGC
1 CTGC
166190 TGCTGGCGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.37, G:0.24, T:0.24
Consensus pattern (21 bp):
CTGCCAAGGCCGACTTGCACT
Left flanking sequence: Indices 165644 -- 166143
CATGGTCACCCGTGGCCGTGAGTAACGGGTATAGGGCTGCGGGGGCCAGGGTTGCCACAATGTGT
CAAAGCCGTGCTCTTTTCTTTTTCATGACAGCGTTAAGGGTTTTCGCCATGTGTGGCGGAGTGCG
TCGGTTGCTACGCGATTCCAAATGGGGATGCACAAGCATAGCAACCTTAGTAGCGTGTCGGCGAC
CCCCAAGTATAAATAGACACCCATTTCTATCAATTGCTCTATCATCACTACAACAATGTCCGACT
CTTTTAGAAAGCCCCTTGGCGACAAGATCTCTGAAGGCCTCACCCCCGAATCCCAGAAGTCTGGT
TTCGAGAAGGCGAAGGAGTCTGTCACTGACAACTTGGACAAGGCTGCCAACAACCTCACCCCCGA
CTCCAACAAGTCCGGCACCCAGACCCTTCAGGACAAGCTCCTGAACGCTGGTGACCAGGCTCACC
AGAAGGCTAAGGCTGCTGACGAGCGCGCCCAGGCTAACCACAACA
Right flanking sequence: Indices 166190 -- 166576
TGCTGGCGACAAGACCCTCGGCGAGACCGTTCACGAGTACGTCGAGGCCGGCAAGGAGCAGTTGG
AGAACGCTGCCCAGTACGTCCAGGAGACCATCTCCAACCTCACTGAGGGCCAGAACACCGGTGCC
GCTGGTACCGCTGGTACCACTGGTACCACTGGCGCCACCACCGGCACCACTGGCACCACTAAGCC
TTAATTGATTTATAGCTTAATTTACGTTAACGGTTTTCACCCATTGTATTGCGGTTGCAAATATC
TAAGCCATGCGCTGCGCGCCGTGCGGCAGGTACAGTCGTTTCGGTTTTGTTCGGAACTAAATAAA
TGCAGATGACACAGGTTGACTTCCGACTTGTCCTGAGTAAATTCCGACTTTGTCGTGCACAT
Found at i:166332 original size:9 final size:9
Alignment explanation
Indices: 166321--166351 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
166311 ACCGGTGCCG
*
166321 CTGGTACCG
1 CTGGTACCA
166330 CTGGTACCA
1 CTGGTACCA
166339 CTGGTACCA
1 CTGGTACCA
166348 CTGG
1 CTGG
166352 CGCCACCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.29, T:0.23
Consensus pattern (9 bp):
CTGGTACCA
Left flanking sequence: Indices 165821 -- 166320
TAGTAGCGTGTCGGCGACCCCCAAGTATAAATAGACACCCATTTCTATCAATTGCTCTATCATCA
CTACAACAATGTCCGACTCTTTTAGAAAGCCCCTTGGCGACAAGATCTCTGAAGGCCTCACCCCC
GAATCCCAGAAGTCTGGTTTCGAGAAGGCGAAGGAGTCTGTCACTGACAACTTGGACAAGGCTGC
CAACAACCTCACCCCCGACTCCAACAAGTCCGGCACCCAGACCCTTCAGGACAAGCTCCTGAACG
CTGGTGACCAGGCTCACCAGAAGGCTAAGGCTGCTGACGAGCGCGCCCAGGCTAACCACAACACT
GCCCAGGCCGATTTGCACTCTGCCAAGGCTGACTTGCACTCTGCTGCTGGCGACAAGACCCTCGG
CGAGACCGTTCACGAGTACGTCGAGGCCGGCAAGGAGCAGTTGGAGAACGCTGCCCAGTACGTCC
AGGAGACCATCTCCAACCTCACTGAGGGCCAGAACACCGGTGCCG
Right flanking sequence: Indices 166352 -- 166576
CGCCACCACCGGCACCACTGGCACCACTAAGCCTTAATTGATTTATAGCTTAATTTACGTTAACG
GTTTTCACCCATTGTATTGCGGTTGCAAATATCTAAGCCATGCGCTGCGCGCCGTGCGGCAGGTA
CAGTCGTTTCGGTTTTGTTCGGAACTAAATAAATGCAGATGACACAGGTTGACTTCCGACTTGTC
CTGAGTAAATTCCGACTTTGTCGTGCACAT
Found at i:166357 original size:18 final size:18
Alignment explanation
Indices: 166321--166379 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
166311 ACCGGTGCCG
* *
166321 CTGGTACCGCTGGTACCA
1 CTGGTACCACTGGCACCA
166339 CTGGTACCACTGGCGCCACCA
1 CTGGTACCACT-G-G-CACCA
* *
166360 CCGGCACCACTGGCACCA
1 CTGGTACCACTGGCACCA
166378 CT
1 CT
166380 AAGCCTTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
18 16 0.48
19 2 0.06
20 2 0.06
21 13 0.39
ACGTcount: A:0.19, C:0.42, G:0.24, T:0.15
Consensus pattern (18 bp):
CTGGTACCACTGGCACCA
Left flanking sequence: Indices 165821 -- 166320
TAGTAGCGTGTCGGCGACCCCCAAGTATAAATAGACACCCATTTCTATCAATTGCTCTATCATCA
CTACAACAATGTCCGACTCTTTTAGAAAGCCCCTTGGCGACAAGATCTCTGAAGGCCTCACCCCC
GAATCCCAGAAGTCTGGTTTCGAGAAGGCGAAGGAGTCTGTCACTGACAACTTGGACAAGGCTGC
CAACAACCTCACCCCCGACTCCAACAAGTCCGGCACCCAGACCCTTCAGGACAAGCTCCTGAACG
CTGGTGACCAGGCTCACCAGAAGGCTAAGGCTGCTGACGAGCGCGCCCAGGCTAACCACAACACT
GCCCAGGCCGATTTGCACTCTGCCAAGGCTGACTTGCACTCTGCTGCTGGCGACAAGACCCTCGG
CGAGACCGTTCACGAGTACGTCGAGGCCGGCAAGGAGCAGTTGGAGAACGCTGCCCAGTACGTCC
AGGAGACCATCTCCAACCTCACTGAGGGCCAGAACACCGGTGCCG
Right flanking sequence: Indices 166380 -- 166576
AAGCCTTAATTGATTTATAGCTTAATTTACGTTAACGGTTTTCACCCATTGTATTGCGGTTGCAA
ATATCTAAGCCATGCGCTGCGCGCCGTGCGGCAGGTACAGTCGTTTCGGTTTTGTTCGGAACTAA
ATAAATGCAGATGACACAGGTTGACTTCCGACTTGTCCTGAGTAAATTCCGACTTTGTCGTGCAC
AT
Found at i:166368 original size:21 final size:21
Alignment explanation
Indices: 166335--166378 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
166325 TACCGCTGGT
* * *
166335 ACCACTGGTACCACTGGCGCC
1 ACCACCGGCACCACTGGCACC
166356 ACCACCGGCACCACTGGCACC
1 ACCACCGGCACCACTGGCACC
166377 AC
1 AC
166379 TAAGCCTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.48, G:0.20, T:0.09
Consensus pattern (21 bp):
ACCACCGGCACCACTGGCACC
Left flanking sequence: Indices 165835 -- 166334
CGACCCCCAAGTATAAATAGACACCCATTTCTATCAATTGCTCTATCATCACTACAACAATGTCC
GACTCTTTTAGAAAGCCCCTTGGCGACAAGATCTCTGAAGGCCTCACCCCCGAATCCCAGAAGTC
TGGTTTCGAGAAGGCGAAGGAGTCTGTCACTGACAACTTGGACAAGGCTGCCAACAACCTCACCC
CCGACTCCAACAAGTCCGGCACCCAGACCCTTCAGGACAAGCTCCTGAACGCTGGTGACCAGGCT
CACCAGAAGGCTAAGGCTGCTGACGAGCGCGCCCAGGCTAACCACAACACTGCCCAGGCCGATTT
GCACTCTGCCAAGGCTGACTTGCACTCTGCTGCTGGCGACAAGACCCTCGGCGAGACCGTTCACG
AGTACGTCGAGGCCGGCAAGGAGCAGTTGGAGAACGCTGCCCAGTACGTCCAGGAGACCATCTCC
AACCTCACTGAGGGCCAGAACACCGGTGCCGCTGGTACCGCTGGT
Right flanking sequence: Indices 166379 -- 166576
TAAGCCTTAATTGATTTATAGCTTAATTTACGTTAACGGTTTTCACCCATTGTATTGCGGTTGCA
AATATCTAAGCCATGCGCTGCGCGCCGTGCGGCAGGTACAGTCGTTTCGGTTTTGTTCGGAACTA
AATAAATGCAGATGACACAGGTTGACTTCCGACTTGTCCTGAGTAAATTCCGACTTTGTCGTGCA
CAT
Done.