sallet_2.scaffold.fasta.s21.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold16
Parameters: 2 7 7 80 10 50 500
Length:  126369

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--561	144	3.9	144	87	0	773	21	25	31	21	1.98
11--582	288	2.0	288	90	1	905	21	25	31	21	1.98
15103--15230	6	20.0	6	79	12	112	0	2	46	51	1.13
15100--15227	26	4.8	26	90	4	184	0	2	46	50	1.14
17277--17344	21	3.2	21	91	0	109	19	25	23	32	1.97
17277--17355	21	3.8	21	89	1	106	18	26	22	31	1.97
17615--17670	25	2.2	25	78	9	60	21	69	1	7	1.22
23501--23529	15	1.9	15	100	0	58	41	20	24	13	1.89
24307--24331	12	2.1	12	100	0	50	24	16	44	16	1.86
25793--25838	9	5.4	9	75	15	53	36	30	32	0	1.58
25792--25838	24	2.0	24	86	0	67	38	29	31	0	1.58
34210--34248	13	3.0	13	92	0	69	20	15	48	15	1.81
36534--36664	63	2.1	63	84	2	165	25	26	22	25	2.00
36740--36956	69	3.2	68	74	10	203	22	25	26	25	2.00
39067--39770	117	6.0	117	79	4	663	23	34	24	18	1.96
39083--39986	156	5.8	156	76	5	695	23	34	24	18	1.96
39103--40415	39	33.7	39	71	3	593	22	33	24	18	1.97
39652--40415	117	6.5	116	86	3	757	22	33	25	18	1.97
39782--40415	234	2.7	234	86	1	869	23	33	25	18	1.97
39067--40439	156	8.8	156	73	6	685	22	33	24	18	1.97
42127--42282	81	2.0	79	89	3	242	18	24	30	26	1.98
42255--42648	198	2.0	198	94	0	698	25	26	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42828--42959	60	2.2	60	87	0	183	25	21	25	27	1.99
45574--45607	16	2.1	16	88	0	50	32	20	20	26	1.97
49323--49393	24	3.2	24	67	29	75	18	42	18	21	1.90
49335--49403	18	3.5	18	70	21	57	17	47	14	20	1.82
49322--49414	42	2.2	42	98	0	177	18	40	20	20	1.91
49677--49724	21	2.3	21	96	0	87	25	27	18	29	1.98
52610--52656	21	2.2	21	88	0	67	12	12	48	25	1.77
52676--52733	22	2.8	21	78	5	64	18	13	32	34	1.91
52684--52772	20	4.4	20	71	18	58	16	16	35	30	1.92
53342--53403	8	7.3	9	68	14	51	19	0	54	25	1.44
53340--53408	17	4.1	17	94	1	113	18	0	56	24	1.42
53914--53950	11	3.4	11	100	0	74	21	54	0	24	1.45
54042--54125	27	3.2	26	88	6	116	9	51	4	34	1.56
55771--55804	11	3.1	11	84	16	52	35	0	47	17	1.48
55756--55804	22	2.3	22	89	6	75	32	2	46	18	1.60
55806--55852	11	4.3	11	80	0	58	29	2	51	17	1.57
56036--56074	17	2.5	15	81	18	53	61	0	25	12	1.31
56043--56074	17	1.9	16	93	6	55	65	0	21	12	1.25
56045--56111	13	5.4	13	77	10	61	58	1	26	13	1.44
56420--56466	21	2.1	21	84	7	58	23	14	53	8	1.69
56724--56751	12	2.3	12	100	0	56	14	17	7	60	1.55
56813--56906	20	4.5	21	77	16	97	22	22	12	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56874--56915	20	2.1	20	90	0	66	21	23	11	42	1.86
56964--57052	36	2.5	36	83	3	117	14	43	16	24	1.86
57626--57691	26	2.5	26	95	0	114	24	15	42	18	1.88
58794--58846	20	2.7	20	94	5	90	24	39	9	26	1.86
62897--62985	43	2.0	44	93	2	153	15	30	17	35	1.92
65558--65597	21	1.9	21	85	10	55	10	0	42	47	1.37
65694--65726	15	2.2	15	94	0	57	54	12	24	9	1.66
68633--68688	21	2.7	21	81	10	69	39	21	33	5	1.76
79174--79227	13	4.2	12	77	13	54	35	20	9	35	1.85
81815--81847	17	1.9	17	100	0	66	45	30	6	18	1.73
81818--81855	17	2.2	17	90	0	58	42	36	7	13	1.73
81852--81891	15	2.6	16	88	4	55	32	55	2	10	1.47
81883--81913	8	3.9	8	95	0	53	12	64	0	22	1.27
85423--85471	10	4.8	10	94	2	80	32	0	38	28	1.57
87799--87883	30	2.8	30	87	0	125	10	29	41	18	1.84
90296--90360	20	3.3	20	91	2	105	0	23	40	36	1.55
90714--90774	12	5.2	12	88	7	99	16	42	6	34	1.74
90714--90774	22	2.7	23	89	5	97	16	42	6	34	1.74
94451--94485	16	2.2	16	94	0	61	40	31	8	20	1.82
96504--96531	9	3.1	9	100	0	56	0	25	21	53	1.46
96498--96545	9	4.5	12	84	15	54	0	25	29	45	1.53
97679--97725	19	2.5	19	89	0	67	8	0	57	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105707--105790	15	5.6	14	84	13	105	14	39	5	40	1.70
105709--105790	33	2.7	30	85	9	87	14	39	6	40	1.71
109421--109475	27	2.0	27	92	0	92	12	27	45	14	1.81
109425--109483	27	2.2	27	84	0	73	15	28	42	13	1.85
122234--122311	21	3.7	21	75	10	70	10	25	32	32	1.89
126222--126265	7	6.4	7	89	5	63	31	56	9	2	1.43

Tables:   1

The End!