Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold16
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 126369
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Found at i:264 original size:144 final size:144
Alignment explanation
Indices: 1--561 Score: 773
Period size: 144 Copynumber: 3.9 Consensus size: 144
* * *
1 GTGCTCGGTGCACTCCTCACAGGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGT
1 GTGCTCAGTACACTCCTCACAAGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGT
* * * * *
66 CTTCGTCAGTGGTCACAATCACCACACCAGAGTCAGTGGCAGTCGAGCCGTCTTCGTCCGTGGTC
66 CTTCGTCAGTGGTCACAATAACAACACCAGAGTCGGTGGCAGTGGAGCCATCTTCGTCCGTGGTC
131 TCCCAGGTCGAAGT
131 TCCCAGGTCGAAGT
* * * *
145 GTGCTCGGTGCACTCCTCACAGGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCAT
1 GTGCTCAGTACACTCCTCACAAGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGT
* * * * * *
210 CTTCATCAGTGGTCACAATCACGACAGCAGAGTCGGTGGCAGTGGAGCCATCTTCGTCGGTGGTG
66 CTTCGTCAGTGGTCACAATAACAACACCAGAGTCGGTGGCAGTGGAGCCATCTTCGTCCGTGGTC
* ** * * **
275 GCATAAGTGGTGGT
131 TCCCAGGTCGAAGT
* * *
289 GTACTCAGTACACTCTTCACAAGTGGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGT
1 GTGCTCAGTACACTCCTCACAAGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGT
* * * * *
354 CTTCGTCAGTGGTCACAATAACAACCCCAGAGTCGGTAGCAGTGTAGCCATCTTTGTCCGTAGTC
66 CTTCGTCAGTGGTCACAATAACAACACCAGAGTCGGTGGCAGTGGAGCCATCTTCGTCCGTGGTC
419 TCCCAGGTCGAAGT
131 TCCCAGGTCGAAGT
*
433 GTGCTCAGTACACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGT
1 GTGCTCAGTACACTCCTCACAAGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGT
* * *
498 CGTCGTCAGTGGTCACAATAACAATC-CCAGAGTCGGTGGCAGTGGAGCCATCTTCATCGGTGGT
66 CTTCGTCAGTGGTCACAATAACAA-CACCAGAGTCGGTGGCAGTGGAGCCATCTTCGTCCGTGGT
562 GGCATAAGTC
Statistics
Matches: 365, Mismatches: 51, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
144 364 1.00
145 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.21
Consensus pattern (144 bp):
GTGCTCAGTACACTCCTCACAAGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGT
CTTCGTCAGTGGTCACAATAACAACACCAGAGTCGGTGGCAGTGGAGCCATCTTCGTCCGTGGTC
TCCCAGGTCGAAGT
Left flanking sequence: None
Right flanking sequence: Indices 562 -- 1061
GGCATAAGTCGTGGTGTACTCGGTGCAATCCACGCAGGTGGTACCAGGGCTAGTTGTAGCTAGGG
TCTCAGCCTCTTTGTCGGGGACCACCGTAGACTCTGCCGGTGGATACTGTAATTTGGTTGTAGTC
GACGTAGAGGTGGTGTGACTTGAGGATTCTGACGACAGAGTACTTGAGGTTGAAGTGGTCGAGGA
AGACAGGACAACGCATGAAGGTGTTTTGCACTGTAATGGAGGACACAGCCCACACTCTTCGGCAA
TCGCGGCTCCTTCAGGAACAGGGCCGCGGTATTTGAATACTAAACCATTTTCCAATTGACCGTAT
TCGCAAACAAAAAGGTCTCTGTCATATCCAGGTCCTAAGTCAATTTTGACCGACGTTTTATACCA
TTCATGGGTGTAGCGAATATATCTTCCATCGTAGACAAAATTCTGCAGAATCCCACTGAGTTCCA
TACCCTCACCAAATCCACGGATAGTCATGTTATTTTTGACCCAAC
Found at i:542 original size:288 final size:288
Alignment explanation
Indices: 11--582 Score: 905
Period size: 288 Copynumber: 2.0 Consensus size: 288
1 GTGCTCGGTG
* *
11 CACTCCTCACAGGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGTCTTCGTCAGT
1 CACTCCTCACAAGTGGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGTCTTCGTCAGT
* * * * *
76 GGTCACAATCACCACACCAGAGTCAGTGGCAGTCGAGCCGTCTTCGTCCGTGGTCTCCCAGGTCG
66 GGTCACAATAACAACACCAGAGTCAGTAGCAGTCGAGCCATCTTCGTCCGTAGTCTCCCAGGTCG
* * * *
141 AAGTGTGCTCGGTGCACTCCTCACAGGTTGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAG
131 AAGTGTGCTCAGTACACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAG
* * * * *
206 CCATCTTCATCAGTGGTCACAATCACGACAGCAGAGTCGGTGGCAGTGGAGCCATCTTCGTCGGT
196 CCATCGTCATCAGTGGTCACAATAACAACACCAGAGTCGGTGGCAGTGGAGCCATCTTCATCGGT
*
271 GGTGGCATAAGTGGTGGTGTACTCAGTA
261 GGTGGCATAAGTCGTGGTGTACTCAGTA
*
299 CACTCTTCACAAGTGGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGTCTTCGTCAGT
1 CACTCCTCACAAGTGGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGTCTTCGTCAGT
* * *
364 GGTCACAATAACAACCCCAGAGTCGGTAGCAGT-GTAGCCATCTTTGTCCGTAGTCTCCCAGGTC
66 GGTCACAATAACAACACCAGAGTCAGTAGCAGTCG-AGCCATCTTCGTCCGTAGTCTCCCAGGTC
428 GAAGTGTGCTCAGTACACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGA
130 GAAGTGTGCTCAGTACACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGA
* *
493 GCCGTCGTCGTCAGTGGTCACAATAACAATC-CCAGAGTCGGTGGCAGTGGAGCCATCTTCATCG
195 GCCATCGTCATCAGTGGTCACAATAACAA-CACCAGAGTCGGTGGCAGTGGAGCCATCTTCATCG
557 GTGGTGGCATAAGTCGTGGTGTACTC
259 GTGGTGGCATAAGTCGTGGTGTACTC
583 GGTGCAATCC
Statistics
Matches: 259, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
287 1 0.00
288 257 0.99
289 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.32, T:0.21
Consensus pattern (288 bp):
CACTCCTCACAAGTGGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAGCCGTCTTCGTCAGT
GGTCACAATAACAACACCAGAGTCAGTAGCAGTCGAGCCATCTTCGTCCGTAGTCTCCCAGGTCG
AAGTGTGCTCAGTACACTCCTCACAAGTAGGACGGGGAATGACCGAGGTCAGGGTGGTCAACGAG
CCATCGTCATCAGTGGTCACAATAACAACACCAGAGTCGGTGGCAGTGGAGCCATCTTCATCGGT
GGTGGCATAAGTCGTGGTGTACTCAGTA
Left flanking sequence: Indices 1 -- 10
GTGCTCGGTG
Right flanking sequence: Indices 583 -- 1082
GGTGCAATCCACGCAGGTGGTACCAGGGCTAGTTGTAGCTAGGGTCTCAGCCTCTTTGTCGGGGA
CCACCGTAGACTCTGCCGGTGGATACTGTAATTTGGTTGTAGTCGACGTAGAGGTGGTGTGACTT
GAGGATTCTGACGACAGAGTACTTGAGGTTGAAGTGGTCGAGGAAGACAGGACAACGCATGAAGG
TGTTTTGCACTGTAATGGAGGACACAGCCCACACTCTTCGGCAATCGCGGCTCCTTCAGGAACAG
GGCCGCGGTATTTGAATACTAAACCATTTTCCAATTGACCGTATTCGCAAACAAAAAGGTCTCTG
TCATATCCAGGTCCTAAGTCAATTTTGACCGACGTTTTATACCATTCATGGGTGTAGCGAATATA
TCTTCCATCGTAGACAAAATTCTGCAGAATCCCACTGAGTTCCATACCCTCACCAAATCCACGGA
TAGTCATGTTATTTTTGACCCAACCGAGATATCCAGTTGAGCCAG
Found at i:15114 original size:6 final size:6
Alignment explanation
Indices: 15103--15230 Score: 112
Period size: 6 Copynumber: 20.0 Consensus size: 6
15093 TCATTCTGGT
* * *
15103 GTGTTG GTGTTG GTGTTG GTGTCGG TGTGTTG GTGTTG GTGTTG TTGTCGG
1 GTGTTG GTGTTG GTGTTG GTGT-TG -GTGTTG GTGTTG GTGTTG GTGT-TG
* *
15154 TGTGTTG GTGTTG GTGTTG TTGTCGG TGTGTTG GTGTTGG TGTGTTG GTGTTG
1 -GTGTTG GTGTTG GTGTTG GTGT-TG -GTGTTG GTGTT-G -GTGTTG GTGTTG
* * *
15207 GTGTTG TTGTTG TTGTTG TTGTTG
1 GTGTTG GTGTTG GTGTTG GTGTTG
15231 TTGCTGGACG
Statistics
Matches: 103, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
6 80 0.78
7 8 0.08
8 15 0.15
ACGTcount: A:0.00, C:0.02, G:0.46, T:0.52
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 14603 -- 15102
TGCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAAATCAAA
GAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGGTGATACT
TGCTCACCACAGCCTCGGTGCTGCTGGTACTTCTGATGGAGTCTCTCGGCTGGGTCGTCCTCCCT
TGGCGCGTCGCGCCATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTGGTA
GGTTGGCCACCTACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTACT
CGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAG
AACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGGGA
GACGAGATTAGAAGTACTAGTGGTGTCACCCCCTTTCATTCTGGT
Right flanking sequence: Indices 15231 -- 15730
TTGCTGGACGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGCCAATG
GTATCCGATTCAATTCGTTGGATCGGGTGGTATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCC
ATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCC
TGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTTTGTAGTATATAGGATATGTACAGGCT
CGCTATAATCAACGCTTACTACGGTACCAACAGTAAAGTCACGTGATCTGAATCACACGACGTGT
AAGCCGGATTAGGCTATATAGCTCGTAAAGCGTCTAACATAAGGAGTTATGTAATGCTCGTAAAG
TCTTTAGGAAATGAATGGTCGTCGTATAGCTCGTCGTATAGTGGGGTGGTCGTTTGTTAGAGGGG
GCCGTTTTTACATGCAGACCTCTGAAATTTGTTAGAGGGGGCCGG
Found at i:15131 original size:26 final size:26
Alignment explanation
Indices: 15100--15227 Score: 184
Period size: 26 Copynumber: 4.8 Consensus size: 26
15090 CTTTCATTCT
15100 GGTGTGTTGGTGTTGGTGTTGGTGTC
1 GGTGTGTTGGTGTTGGTGTTGGTGTC
*
15126 GGTGTGTTGGTGTTGGTGTTGTTGTC
1 GGTGTGTTGGTGTTGGTGTTGGTGTC
*
15152 GGTGTGTTGGTGTTGGTGTTGTTGTC
1 GGTGTGTTGGTGTTGGTGTTGGTGTC
*
15178 GGTGTGTTGGTGTTGGTGTGTTGGTGTT
1 GGTGTGTTGGTGTT-G-GTGTTGGTGTC
* *
15206 GGTGTTGTTGTTGTTGTTGTTG
1 GGTG-TGTTGGTGTTGGTGTTG
15228 TTGTTGCTGG
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
26 65 0.69
27 6 0.06
28 14 0.15
29 9 0.10
ACGTcount: A:0.00, C:0.02, G:0.47, T:0.51
Consensus pattern (26 bp):
GGTGTGTTGGTGTTGGTGTTGGTGTC
Left flanking sequence: Indices 14600 -- 15099
CGCTGCACCCTGCAAGCCCGGCTCCTTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAAATC
AAAGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGGTGAT
ACTTGCTCACCACAGCCTCGGTGCTGCTGGTACTTCTGATGGAGTCTCTCGGCTGGGTCGTCCTC
CCTTGGCGCGTCGCGCCATGGTGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTG
GTAGGTTGGCCACCTACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCT
ACTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCA
CAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATG
GGAGACGAGATTAGAAGTACTAGTGGTGTCACCCCCTTTCATTCT
Right flanking sequence: Indices 15228 -- 15727
TTGTTGCTGGACGTTGTTTAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGCCA
ATGGTATCCGATTCAATTCGTTGGATCGGGTGGTATTGGCACCGTTTTTTCCCCCTGTTGGTGGT
GCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTA
GCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTTTGTAGTATATAGGATATGTACAG
GCTCGCTATAATCAACGCTTACTACGGTACCAACAGTAAAGTCACGTGATCTGAATCACACGACG
TGTAAGCCGGATTAGGCTATATAGCTCGTAAAGCGTCTAACATAAGGAGTTATGTAATGCTCGTA
AAGTCTTTAGGAAATGAATGGTCGTCGTATAGCTCGTCGTATAGTGGGGTGGTCGTTTGTTAGAG
GGGGCCGTTTTTACATGCAGACCTCTGAAATTTGTTAGAGGGGGC
Found at i:17306 original size:21 final size:21
Alignment explanation
Indices: 17277--17344 Score: 109
Period size: 21 Copynumber: 3.2 Consensus size: 21
17267 AATCAAACAT
*
17277 TGACCACTTACGGTGCTTGTC
1 TGACAACTTACGGTGCTTGTC
17298 TGACAACTTACGGTGCTTGTC
1 TGACAACTTACGGTGCTTGTC
* *
17319 TGGCAACTTACAGTGCTTGTC
1 TGACAACTTACGGTGCTTGTC
17340 TGACA
1 TGACA
17345 CCTACAGTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.32
Consensus pattern (21 bp):
TGACAACTTACGGTGCTTGTC
Left flanking sequence: Indices 16777 -- 17276
CGCCAAATGCCTATATCGTCTGTCTACCCAATATTAGGCTCTGTTTGCGTCCCTCTTACCATTTT
GGGTGTAGTCACGTGATACACTTCATAGAAGCGACGCCTAATACCCCCATCCAGCCTGATTTCCG
GTTGTTGAGAAGCTCCACGCACTCTAAACCACGTAAAGCATCCTTTGAAGTGCCCGCACAGCCAT
CCCTACATGCAACCTCTGTCTAAAACGCGCTTTCGGGCATTAGGCGGATAAATTACCCCCTATAG
CTGTCTTCAGATGTGCCACCGGCGTCAAAGCACTACATACCCAAGAAATGCCCCTCTGTACAACC
CACCCAGACCCAGCCACCGCCAAGTCTCCTGCTCGTATTTTACGATGCAGCGGCCGTGGTTCCTG
ACCGTCTCCTGCAGATAAGCAACCTAAACAACGTATAAAGGTTGCTGTTGACACCAGAGCCGTGA
GCGACAGCAGCCACGCCGTTCATCACACGTATCGTAATCAAACAT
Right flanking sequence: Indices 17345 -- 17844
CCTACAGTGCTCTAATGCAGACATCAGTGGCCATCACCAGGCACAGACGTCAGCCAGTACTAATC
ACTAGTCACGTCAATTGACCAGCCAAGAGGTTGCTTCATGGTGGACTTCATCAACCTGGTGGCTT
GGTCGCCATCTTCAATCACATTCACCATTCTTTGCACATTTTCTGAAAAATTCAAACCGTATCTT
AATACTATAACTGTCTAAAGTGCCATACAACCTACAGTTTCACTCCCCTCACCACACTACTACAC
TACTATGTCACCACCCCGCCCCCCACCACACCCTCACACCCCATCCCCCACCAACCACTCTCCAC
CGTCCTCTCCCCCCACTTTTCCCACGGTGCCTCCACCTCATCCAAAATTACCTATTTCGGCGACG
CCCATCACGTGACCTGGCCCGTTGCAAACCTCCGCGCGTTCGCACTATTTTTCACTCTCTACCAA
GCTCTGTTTATCCACTGCCTATCCACAACCCCCACCTCCATGAGC
Found at i:17352 original size:20 final size:21
Alignment explanation
Indices: 17277--17355 Score: 106
Period size: 21 Copynumber: 3.8 Consensus size: 21
17267 AATCAAACAT
* *
17277 TGACCACTTACGGTGCTTGTC
1 TGACAACTTACAGTGCTTGTC
*
17298 TGACAACTTACGGTGCTTGTC
1 TGACAACTTACAGTGCTTGTC
*
17319 TGGCAACTTACAGTGCTTGTC
1 TGACAACTTACAGTGCTTGTC
*
17340 TGAC-ACCTACAGTGCT
1 TGACAACTTACAGTGCT
17356 CTAATGCAGA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
20 11 0.21
21 42 0.79
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.32
Consensus pattern (21 bp):
TGACAACTTACAGTGCTTGTC
Left flanking sequence: Indices 16777 -- 17276
CGCCAAATGCCTATATCGTCTGTCTACCCAATATTAGGCTCTGTTTGCGTCCCTCTTACCATTTT
GGGTGTAGTCACGTGATACACTTCATAGAAGCGACGCCTAATACCCCCATCCAGCCTGATTTCCG
GTTGTTGAGAAGCTCCACGCACTCTAAACCACGTAAAGCATCCTTTGAAGTGCCCGCACAGCCAT
CCCTACATGCAACCTCTGTCTAAAACGCGCTTTCGGGCATTAGGCGGATAAATTACCCCCTATAG
CTGTCTTCAGATGTGCCACCGGCGTCAAAGCACTACATACCCAAGAAATGCCCCTCTGTACAACC
CACCCAGACCCAGCCACCGCCAAGTCTCCTGCTCGTATTTTACGATGCAGCGGCCGTGGTTCCTG
ACCGTCTCCTGCAGATAAGCAACCTAAACAACGTATAAAGGTTGCTGTTGACACCAGAGCCGTGA
GCGACAGCAGCCACGCCGTTCATCACACGTATCGTAATCAAACAT
Right flanking sequence: Indices 17356 -- 17855
CTAATGCAGACATCAGTGGCCATCACCAGGCACAGACGTCAGCCAGTACTAATCACTAGTCACGT
CAATTGACCAGCCAAGAGGTTGCTTCATGGTGGACTTCATCAACCTGGTGGCTTGGTCGCCATCT
TCAATCACATTCACCATTCTTTGCACATTTTCTGAAAAATTCAAACCGTATCTTAATACTATAAC
TGTCTAAAGTGCCATACAACCTACAGTTTCACTCCCCTCACCACACTACTACACTACTATGTCAC
CACCCCGCCCCCCACCACACCCTCACACCCCATCCCCCACCAACCACTCTCCACCGTCCTCTCCC
CCCACTTTTCCCACGGTGCCTCCACCTCATCCAAAATTACCTATTTCGGCGACGCCCATCACGTG
ACCTGGCCCGTTGCAAACCTCCGCGCGTTCGCACTATTTTTCACTCTCTACCAAGCTCTGTTTAT
CCACTGCCTATCCACAACCCCCACCTCCATGAGCTCCACGCTGCT
Found at i:17670 original size:26 final size:25
Alignment explanation
Indices: 17615--17670 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
17605 TACTATGTCA
*
17615 CCACCCCGCCCCCCACCACACCCTC
1 CCACCCCACCCCCCACCACACCCTC
* *
17640 ACACCCCATCCCCCACCA-ACCACTC
1 CCACCCCACCCCCCACCACACC-CTC
17665 TCCACC
1 -CCACC
17671 GTCCTCTCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 3 0.12
25 18 0.72
26 4 0.16
ACGTcount: A:0.21, C:0.70, G:0.02, T:0.07
Consensus pattern (25 bp):
CCACCCCACCCCCCACCACACCCTC
Left flanking sequence: Indices 17115 -- 17614
CCACCGCCAAGTCTCCTGCTCGTATTTTACGATGCAGCGGCCGTGGTTCCTGACCGTCTCCTGCA
GATAAGCAACCTAAACAACGTATAAAGGTTGCTGTTGACACCAGAGCCGTGAGCGACAGCAGCCA
CGCCGTTCATCACACGTATCGTAATCAAACATTGACCACTTACGGTGCTTGTCTGACAACTTACG
GTGCTTGTCTGGCAACTTACAGTGCTTGTCTGACACCTACAGTGCTCTAATGCAGACATCAGTGG
CCATCACCAGGCACAGACGTCAGCCAGTACTAATCACTAGTCACGTCAATTGACCAGCCAAGAGG
TTGCTTCATGGTGGACTTCATCAACCTGGTGGCTTGGTCGCCATCTTCAATCACATTCACCATTC
TTTGCACATTTTCTGAAAAATTCAAACCGTATCTTAATACTATAACTGTCTAAAGTGCCATACAA
CCTACAGTTTCACTCCCCTCACCACACTACTACACTACTATGTCA
Right flanking sequence: Indices 17671 -- 18170
GTCCTCTCCCCCCACTTTTCCCACGGTGCCTCCACCTCATCCAAAATTACCTATTTCGGCGACGC
CCATCACGTGACCTGGCCCGTTGCAAACCTCCGCGCGTTCGCACTATTTTTCACTCTCTACCAAG
CTCTGTTTATCCACTGCCTATCCACAACCCCCACCTCCATGAGCTCCACGCTGCTGCTCGACGCG
TTCGTGGTGCGACTAGACGAGGCCGGGTGTGGCACCGAGCCCGGCGGAACCCCCGATTTCCGCGC
GGCCCACGCGATTTTCTCCGAGCTCCTCGACATGATCGAGGCCCTTAACGGGGCCGCGGAGTACG
CCCACTTCTTGACCCAGATGGTCCCGGTGTTTCTCGCGGTGCTTGACCGTGTGCCCGTGCTGTTC
GACGCCGCGCTGCCCGAGCACCGCTTGCGCAACATCGTGCTCGAGATCATCCACCGGCTGATCAT
GAACGACACTTTTGCTCCGTTTGCCGAGGGCATCCTCAAGAAGTT
Found at i:23521 original size:15 final size:15
Alignment explanation
Indices: 23501--23529 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23491 AAGGACGAGA
23501 AAGACTCTAAGGACG
1 AAGACTCTAAGGACG
23516 AAGACTCTAAGGAC
1 AAGACTCTAAGGAC
23530 TCTAAGGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.21, G:0.24, T:0.14
Consensus pattern (15 bp):
AAGACTCTAAGGACG
Left flanking sequence: Indices 23001 -- 23500
GGTGGTGGTGCAGTACTTGGAGCAGTGTCCTGGCGACGTGGCGCTTGTGATTGACGCTGCGGACG
CTGTGTGCAGCTTGGAGTTGCCGGTGCCCGCGGTGCTCGAGGACTTTGTGTGGAACCGCGTGGTG
TGCGAGCCGCTGGTGCACTTGCGGTTGGGCTACTTGCACGGGGTGTTGGACTACGTGGCGGCCAA
CGACGCGGTGCGGACCAAGATCTTCTTGTTCAAGCACGTGGTGAACGCGGTGCTTGTGTACGACA
AGGCGCGGTACGGGCTGTTGAAGCACTTGGTTGGTGTGGAGAGCGACTTTGCGGAGGAGGCAGAG
TATAGAAAGCGGGTCGAAGGTAAGGAGAAGGGGGAGAAGGAAGGGAAGGAGGTTAAGGACGAGGA
CGAGGAGATGGAGGAGAAGGACGAGTCGAAGGCGAACGGGTCCATGGAGTCTAACGAGGAGGCAG
AGAAAGAGTCTAAGGATAAGGATGAGGATAAGGAGAAGGACGAGA
Right flanking sequence: Indices 23530 -- 24029
TCTAAGGATTCTAAGGATGAGTCTGACACTAAGGACACCAAGGACGACTCTAAGGACAGCAAAAC
TGCTACCTCGCCTCCCCCCCCACCCCACCTCCTCCCGGGCCTCCCGCAACAACTGTGGGTGTCCA
AGGTCCACGAAACCATCTGGCAGGCCAACAAGGACATCATCCACAACCGCCTGGCGGGCTTCCTC
GACAACTACCGCTACGTGTTGCTCGAGCTCACCGCCATCTTGCTCGACGGCGCGCCCGACCACCT
CGAGGAGGTTCGCAAGGACATCATCAAGTTTGCGTGGAACTACCTCAAGCTCGACGACCACATCA
CCAAGCAGGTGGCGTACGTGACCACGGCGTTGTTCATCCTGAAGTTCGACACACCGACGCCGTTG
GTGACCCAGGTGTTCATGGCCCTTTTGAAAACGCACCAGAGCGAGTGCCGCCACTTGGTGCGCCA
GGCACTCGACTTGTTGGCGCCGGTGATGGCCGCGCGCCCGGCCGG
Found at i:24322 original size:12 final size:12
Alignment explanation
Indices: 24307--24331 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24297 GGGCAAGGAG
24307 GTCAAGGACGGT
1 GTCAAGGACGGT
24319 GTCAAGGACGGT
1 GTCAAGGACGGT
24331 G
1 G
24332 ACGAGGACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.44, T:0.16
Consensus pattern (12 bp):
GTCAAGGACGGT
Left flanking sequence: Indices 23807 -- 24306
ACATCATCAAGTTTGCGTGGAACTACCTCAAGCTCGACGACCACATCACCAAGCAGGTGGCGTAC
GTGACCACGGCGTTGTTCATCCTGAAGTTCGACACACCGACGCCGTTGGTGACCCAGGTGTTCAT
GGCCCTTTTGAAAACGCACCAGAGCGAGTGCCGCCACTTGGTGCGCCAGGCACTCGACTTGTTGG
CGCCGGTGATGGCCGCGCGCCCGGCCGGGCTGTGGTTGCGCTGGCCGCGGCGGGTGATCTCCGAG
GACGGCTTCAACGTCACCAACGTGCTCAACGTGTACCAGTTCATTGTCCACCACCCGGACTTGTT
CTTCCCGGCGCGCGAGCACTTTATCGGCAACATGATCACTGCCATGGGCAAGTTGACCATCCAGG
TGAACCCTGCGATCGAGAACCAGGTGTTGGCGATCGAGCTTTCCGAGTTGATTTTGAAGTGGGAG
AACAAGGCGAACGAGGTGAAGAAGGAGGAGGACAAGGGCAAGGAG
Right flanking sequence: Indices 24332 -- 24831
ACGAGGACGAAGCCATGGATGGCAAGGATGGCGGCAATGGCGACGAAAACGACGACGCTATGGAT
GTCGACGACGACACCAAGAAGGATGACGTCATCAAGGATGACAACACCAATGACGTCACCAATGA
CTCCACCAACTCTACTGCCAATGACTCCACGTCCACCGACGACTTTGGCACCTCGCCCGGGTACT
CGGTCCCGTTTGGCCAGCGCGAGGCGTGTGTCACCTTCCTCATCCGCTACGTGTGCATCCTGCCC
CAGCGGGCATCCGAACTGGAGCTCGGCCAGAAGGCGCTTGGCATCCTCTACGAGCTCTTGCTGCC
CGCCCACTGGCTGCTGGTGCTGGTCAAGCTCACGTTCTTCGAAAAGTTCTTGTTGCTGAACGACT
TGAACCTGGCGCTGGTGCTTGGCTACTGCCTCAACGCCTTGGAAGTGCTCGGGGTGGTGCTCGAG
TGGAAGCTGGCCGAGTGGATCGTCGCCAACTTGGCGTATCTCCAC
Found at i:25805 original size:9 final size:9
Alignment explanation
Indices: 25793--25838 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
25783 CACGGCAATA
25793 ACGGCAACG
1 ACGGCAACG
* *
25802 ACGGGAACA
1 ACGGCAACG
25811 ACGGCAACG
1 ACGGCAACG
25820 A---CAACG
1 ACGGCAACG
25826 ACGGCAACG
1 ACGGCAACG
25835 ACGG
1 ACGG
25839 GATGGAGGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
6 6 0.20
9 24 0.80
ACGTcount: A:0.37, C:0.30, G:0.33, T:0.00
Consensus pattern (9 bp):
ACGGCAACG
Left flanking sequence: Indices 25293 -- 25792
GCTCGACAAGGACACGTTGGAGAAGATCATCCGCATCGTCAAGGGGTGGGTGTTTGACCGCACCG
ACTTGTTCCCCACCACCAAGGAGAAGGCGGTGATTCTCGGCAAGATGATGGTGTTTGAGATCCGC
GGCGAGCCCGCGTTGCTGAAGGAGTTCTACCAGATCATCGTCGACATCTTCGAGGACGACCTGTT
CCTGTGCTCCGAGCTCACGGTGCGCATGGAGCAGCCGTTCCTCGTGGGCACGCGGCTGACGGACG
TGGGCATCCGCCGCAAGCTCATGCTGATCTTGACGAGCCTGCTCGAGGTGGACATCGCCAAGCGG
TTGTACTACGTGGTGCGCCAGCAAAACTGGGAGTACCTCGCGGACTACCCGTGGCTCAACCAGGC
GCTCCAGTTGTTGTTGGGCCTGTTTGATCCCGAGTACCCGCTCCGGCTCGTGGAGCTGGAGCCGC
GGTTGGCGCCGCTCACAGTTTTCCCCTACAGGGCCCACGGCAATA
Right flanking sequence: Indices 25839 -- 26338
GATGGAGGTGGACCTGGAGGCGAGTCCCGAGCTCGCCCGCCTCTTGGCCGACCACAACGCGTTCC
TCGCGCTGCTCGACGTGGACGCGGGCCAGCTCATCGAGCCGCTCGTGGACACCTTCTACCAGCTG
CCGGCGTGTGTGGCGGCCGCGTGGTCGCAGTTGTTCCCGTTGGCGTTCTCCGCCATCCCCCGCGG
CGAGCACTTGGACTTCACCCGGGCGATGGTGGTGCTCCTCTCCAAGGACTACCACACCCGCCAGG
TGGACTCGCGGCCCAACGTGGTGCAGATGTTGCTTGACGGGGCGCTGCGGTGCGGGCTCGAGCTT
CCCCCGTTGGCGGTGGAGTGCTTGGGCGCCAACTTCGACGCGTGGACCCAGGCGATTGCGCTTTT
GGAGGCCACCGAGGATCGGACCGCCCAGGCCGCCACTGCCGACGTGCGCGAGGTGACGCAGGACG
CGCTCGCCAAGCTCTACGCGCTGCTCCGCGAGGACGACATGTTCT
Found at i:25824 original size:24 final size:24
Alignment explanation
Indices: 25792--25838 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
25782 CCACGGCAAT
* *
25792 AACGGCAACGACGGGAACAACGGC
1 AACGACAACGACGGCAACAACGGC
*
25816 AACGACAACGACGGCAACGACGG
1 AACGACAACGACGGCAACAACGG
25839 GATGGAGGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.30, G:0.32, T:0.00
Consensus pattern (24 bp):
AACGACAACGACGGCAACAACGGC
Left flanking sequence: Indices 25292 -- 25791
TGCTCGACAAGGACACGTTGGAGAAGATCATCCGCATCGTCAAGGGGTGGGTGTTTGACCGCACC
GACTTGTTCCCCACCACCAAGGAGAAGGCGGTGATTCTCGGCAAGATGATGGTGTTTGAGATCCG
CGGCGAGCCCGCGTTGCTGAAGGAGTTCTACCAGATCATCGTCGACATCTTCGAGGACGACCTGT
TCCTGTGCTCCGAGCTCACGGTGCGCATGGAGCAGCCGTTCCTCGTGGGCACGCGGCTGACGGAC
GTGGGCATCCGCCGCAAGCTCATGCTGATCTTGACGAGCCTGCTCGAGGTGGACATCGCCAAGCG
GTTGTACTACGTGGTGCGCCAGCAAAACTGGGAGTACCTCGCGGACTACCCGTGGCTCAACCAGG
CGCTCCAGTTGTTGTTGGGCCTGTTTGATCCCGAGTACCCGCTCCGGCTCGTGGAGCTGGAGCCG
CGGTTGGCGCCGCTCACAGTTTTCCCCTACAGGGCCCACGGCAAT
Right flanking sequence: Indices 25839 -- 26338
GATGGAGGTGGACCTGGAGGCGAGTCCCGAGCTCGCCCGCCTCTTGGCCGACCACAACGCGTTCC
TCGCGCTGCTCGACGTGGACGCGGGCCAGCTCATCGAGCCGCTCGTGGACACCTTCTACCAGCTG
CCGGCGTGTGTGGCGGCCGCGTGGTCGCAGTTGTTCCCGTTGGCGTTCTCCGCCATCCCCCGCGG
CGAGCACTTGGACTTCACCCGGGCGATGGTGGTGCTCCTCTCCAAGGACTACCACACCCGCCAGG
TGGACTCGCGGCCCAACGTGGTGCAGATGTTGCTTGACGGGGCGCTGCGGTGCGGGCTCGAGCTT
CCCCCGTTGGCGGTGGAGTGCTTGGGCGCCAACTTCGACGCGTGGACCCAGGCGATTGCGCTTTT
GGAGGCCACCGAGGATCGGACCGCCCAGGCCGCCACTGCCGACGTGCGCGAGGTGACGCAGGACG
CGCTCGCCAAGCTCTACGCGCTGCTCCGCGAGGACGACATGTTCT
Found at i:34231 original size:13 final size:13
Alignment explanation
Indices: 34210--34248 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
34200 CGGACTTGTT
34210 GTAGACACGGTGG
1 GTAGACACGGTGG
*
34223 GTGGACACGGTGG
1 GTAGACACGGTGG
34236 GTAGACACGGTGG
1 GTAGACACGGTGG
34249 TTAAGCCCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.21, C:0.15, G:0.49, T:0.15
Consensus pattern (13 bp):
GTAGACACGGTGG
Left flanking sequence: Indices 33710 -- 34209
CAGGAGCAGCTGCAGAACGCCCAGTTCCCTGTGCTCACCAAGCTGGCGCGGCTGACCCCGGTGTT
GAACCAGGGGTGGGTGGGCACGTCGCAGGGCCTGCGCAAGGACAACTTCCCTGTGCTCAAAAAGA
AGGCTCCCGTGGCCACCAAGGCTCCTCTCTCGTACAACGGGATCGTGGCTCCCCAGCCCACCCAC
CGGGTGAGCGTCAACCGCCAGCAGGCCAACTTCACCCCGCTGTACTTGCTGCTGCCGCTGCCACT
GCCGCTGCTGCTGGCTCTGCTGTCACGGGTGCCGCTGGTGAATGACAACCGGTTCCCTGCGCTTC
AGAAGAAGGAGAAGAAGAAGATTGCACGGGTGAACCAGTACAACATCCCCGACCCGAACTCGTGG
GGGGCCCAGATGGGGCTGCTGTCACGACGGGAAGCCGACTTTGGTGTTGGCATCAAGGTGGTGGA
CAAACGCAAGGGGAAGAAGAAGGCGCACAACACGTCGGACTTGTT
Right flanking sequence: Indices 34249 -- 34748
TTAAGCCCGCCTCATTATAGAAATGCATGGTTAGGACGAAGGAGGAGAAGTGAGTGAGGGATAGA
GAAGGGGAGAGAGGAATGGTAGCTAGAAACGAATAGAGATAGATTGAAAGGATGATATGCTGCAG
ATGCTGCAGGGTCTAGGGTGTATGCAATTGGGGAACTACGTCGCTCAGCACTTGGTTGTGGCCAA
CGCCTACTGCTCTAAATGTGAAAAGTGTATTGTTTGACGCATTCATAGGTTATAGTCTTTTCCCA
TTCTTTGCTAGGCGCTAGTCTCTTGATTTAGTAATTTGTTAGTATCATGTGACCTTGATCACGTG
ACCGTTTTGATTTTGAACAGAGGTTCACCTGGGCCTTGTTATCCCGAAATTTTTTTGCGTCGTTC
TTATAGCGTCTTGGTGCTCTTGCGGTGTGTTCCAGGCTTATGTAGCTTGGTTTGGCTCAAATGGG
TGACCATTGGCAACCACAAGCAAATTTGCTTATGTGCACTACCGT
Found at i:36601 original size:63 final size:63
Alignment explanation
Indices: 36534--36664 Score: 165
Period size: 63 Copynumber: 2.1 Consensus size: 63
36524 CAGTGGTTGG
* * *
36534 CAGCTCCAATGAAGAGAACGATT-CGTCAGTTTGGGTTTCGTCAACGAGACCATCTTCAGTAGA
1 CAGCTCCAATGAAGAG-ACGATTCCGTCAGTCTGGGTCTCGTCAACGAGACCATCATCAGTAGA
* * * * * *
36597 CAGCTCCACTGCATAGACGGTTCCTTCAGTCTGGGTCTCGTCAACGAGACCATCATCATTAGA
1 CAGCTCCAATGAAGAGACGATTCCGTCAGTCTGGGTCTCGTCAACGAGACCATCATCAGTAGA
36660 CAGCT
1 CAGCT
36665 GCATTGCAGA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
62 5 0.09
63 53 0.91
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (63 bp):
CAGCTCCAATGAAGAGACGATTCCGTCAGTCTGGGTCTCGTCAACGAGACCATCATCAGTAGA
Left flanking sequence: Indices 36034 -- 36533
TGGTTGTCTTTGGTGTCAGACAATTGATCATCTCTCGAGGTAGGGGACAACGACCCGTTGGAGTC
GGTGTTCTTCGCATAATCTTCAACGTTCAAGCCACCAGTGTCACTCGATTGGAGACTGACATGAG
TCTCTAAGGTTTGAGAGCTTGCAAAGTTCTCGGTGATTGTGGTATGGTGCTCACTGATGGAGGTT
GGAACCTCTCTGAAGTTTGACACCATTGCGGATTTGTCTAGACGAGCAGACTCCAGAGTCAGCAA
CACGCCACGGTCAGTGGTCGGTGGCTCCTTGGAATCGTCGGAGTCTCCGGAAGTAATGGAGCCTT
CGGAGGTTGTTTTTGGAGAACCTCCCAGCGAATCAGTCTCGACCACCGAACCAGTTGATGATGTC
AACAGAGGCTTCTTGTGGTCACTGAGACCTTCGTTGATGGAAAGCTCCAGTTCGGAGACGGTGTT
GGATCCGTCAGTTTCAGCTGCGTCAACGAGTCCGTCAGTGGTTGG
Right flanking sequence: Indices 36665 -- 37164
GCATTGCAGAGATAGATTCATCGGTTTGGATCCCTTCAACAAGACCATCGTCGGTGGACAGTTCA
ACTACGGACATGGTACTGGATTCATCACTCTGAATTGAGTCAACGAGACCGTCAGCGGTGACCAG
CTCCAGTTCCGAGGTGGTACTGGATTCGTCAGTTTGGATTGCATCAACGATACCATCATTCAGCT
CCAGTTCCGAGGCGGTATTGGCTTCGTCAGTCTGAGTTGCGCCAACGAAACCGTCAGCAGTGAAC
AGCTCCAGTTCCGAGGTGTTACTGGACTCATCCGTTTGAGCTCCGTCAACGAGACCATCATTGGT
AGACAGCTCCACTACAGAAACGGTTCCATCAGTTTGGGTCGCGTCAGCCAGACCATCATCAGTAG
ACAGTTCCACTGCGGAGATAGTACTGGATCCATCACTCTGAGTTGCGTCAGCAAGACCATCGTTA
GAGGACAGCTCCATCTCCGATGTAGTACTGGATTCCTCTGTTTGG
Found at i:36813 original size:69 final size:68
Alignment explanation
Indices: 36740--36956 Score: 203
Period size: 69 Copynumber: 3.2 Consensus size: 68
36730 ACTACGGACA
* * *
36740 TGGTACTGGATTCATCACTCTGAATTGAGTCAACGAGACCGTCAGCGGTGACCAGCTCCAGTTCC
1 TGGTACTGGATTCATCAGTCTGAATTGAGTCAACGAAACCGTCAGC-GTGAACAGCTCCAGTTCC
36805 GAGG
65 GAGG
* * * * * *
36809 TGGTACTGGATTCGTCAGTTTGGATTGCA-TCAACGATACCATCA---T--TCAGCTCCAGTTCC
1 TGGTACTGGATTCATCAGTCTGAATTG-AGTCAACGAAACCGTCAGCGTGAACAGCTCCAGTTCC
36868 GAGG
65 GAGG
* * * * * * *
36872 CGGTATTGGCTTCGTCAGTCTGAGTTGCGCCAACGAAACCGTCAGCAGTGAACAGCTCCAGTTCC
1 TGGTACTGGATTCATCAGTCTGAATTGAGTCAACGAAACCGTCAGC-GTGAACAGCTCCAGTTCC
36937 GAGG
65 GAGG
* *
36941 TGTTACTGGACTCATC
1 TGGTACTGGATTCATC
36957 CGTTTGAGCT
Statistics
Matches: 116, Mismatches: 24, Indels: 16
0.74 0.15 0.10
Matches are distributed among these distances:
63 50 0.43
65 1 0.01
67 1 0.01
69 63 0.54
70 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (68 bp):
TGGTACTGGATTCATCAGTCTGAATTGAGTCAACGAAACCGTCAGCGTGAACAGCTCCAGTTCCG
AGG
Left flanking sequence: Indices 36240 -- 36739
GAAGTTTGACACCATTGCGGATTTGTCTAGACGAGCAGACTCCAGAGTCAGCAACACGCCACGGT
CAGTGGTCGGTGGCTCCTTGGAATCGTCGGAGTCTCCGGAAGTAATGGAGCCTTCGGAGGTTGTT
TTTGGAGAACCTCCCAGCGAATCAGTCTCGACCACCGAACCAGTTGATGATGTCAACAGAGGCTT
CTTGTGGTCACTGAGACCTTCGTTGATGGAAAGCTCCAGTTCGGAGACGGTGTTGGATCCGTCAG
TTTCAGCTGCGTCAACGAGTCCGTCAGTGGTTGGCAGCTCCAATGAAGAGAACGATTCGTCAGTT
TGGGTTTCGTCAACGAGACCATCTTCAGTAGACAGCTCCACTGCATAGACGGTTCCTTCAGTCTG
GGTCTCGTCAACGAGACCATCATCATTAGACAGCTGCATTGCAGAGATAGATTCATCGGTTTGGA
TCCCTTCAACAAGACCATCGTCGGTGGACAGTTCAACTACGGACA
Right flanking sequence: Indices 36957 -- 37456
CGTTTGAGCTCCGTCAACGAGACCATCATTGGTAGACAGCTCCACTACAGAAACGGTTCCATCAG
TTTGGGTCGCGTCAGCCAGACCATCATCAGTAGACAGTTCCACTGCGGAGATAGTACTGGATCCA
TCACTCTGAGTTGCGTCAGCAAGACCATCGTTAGAGGACAGCTCCATCTCCGATGTAGTACTGGA
TTCCTCTGTTTGGATCTCGTCATCGGGACCATCATCGGTTGTCAGCTCCAGTTCCAAGGTGGTAC
TGGATTCGTCACTCAGAGTTGCGTCAACGAGACCGTTGGTAGACTCCAGTTCCGAAGAGGTACTA
GATTCGTCAGTTTCGACTGGGTCAACAAGACCATCATCGGTGGACAGCTCCAGTTCCGTGGTACC
GGATATCTCAGTTTGGACTGCGTCAACAATACCATCATCGGTAGACAGATCCACTGCAGAAATGG
ATTGTGTCTCTTCATCGGTAGACAGTTCGGTTGCGGACATAGTAC
Found at i:39282 original size:117 final size:117
Alignment explanation
Indices: 39067--39770 Score: 663
Period size: 117 Copynumber: 6.0 Consensus size: 117
39057 TGAGTCAAAA
* * *
39067 TCAGGTACCGCTCCA-TCAAACCCTCCAGTCTCAGATGGCTGAGGCACCGCTCCACCAAACCCGT
1 TCAGGCACAGCTCCACT-AAACCCTCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCC-T
* * * * * * *
39131 CGGAAT-GC-GATGGCTCTGGTACCGCTCCACCGAACCCGTCGGATTGTGAAGGC
64 C-CAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
* * *
39184 TCAGGCA-ACGCTCCACTAAAACCTCCATTCTCAGATGGCTCAGGCACCGCTCCACCAAACCATC
1 TCAGGCACA-GCTCCACTAAACCCTCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCTC
* * * * * * *
39248 CAGTCTCAGATGGCTCAGGTACTGCACCATCGAACTCGTCCGACTGTGAAGGC
65 CAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
* * * * * ** * * * * ***
39301 TCTGGCACAGCTCCACGAGAAACGT-CGGAT-TGTGAAGGCTCGGGCACAGGTTTTCCAAACCCT
1 TCAGGCACAGCTCCACTA-AACCCTCCAG-TCTCAGATGGCTCAGGCACCGCTCCACCAAACCCT
** * *
39364 CCAGTCTCAGATGGCTGGGGCACCGCTCCACCAAACCCGTTGGATTGTGAAGGC
64 CCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
* * * * * *
39418 TCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTGAGGCACCGCTCCTCCAAACCCTCC
1 TCAGGCACAGCTCCACTAAACCCTCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCTCC
* * *
39483 AGTCTCAGATGGCTGAGGCACCGCTGCACCAAACCCGTCGGATTGTGAAGGC
66 AGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
* * *
39535 TCAGGCA-ACGCTCCATTAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAATCCTC
1 TCAGGCACA-GCTCCACTAAACCCTCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCTC
* * * * *
39599 CAGTCTCGGATGGCTCAGGTACTGCACCACCAAACCCGTCGGACTGTGAAGGA
65 CAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
* ** * * * * *
39652 TCAGGCACAGCTCCA-TCAAACCCGT-CGGAT-TGTGAAGGCTCGGGCACAGGTCCTCCAAACCC
1 TCAGGCACAGCTCCACT-AAACCC-TCCAG-TCTCAGATGGCTCAGGCACCGCTCCACCAAACCC
* *
39714 TCTAGTCTCAGATGGCTGAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
63 TCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
39769 TC
1 TC
39771 TGGTACCGCT
Statistics
Matches: 478, Mismatches: 95, Indels: 28
0.80 0.16 0.05
Matches are distributed among these distances:
115 2 0.00
116 10 0.02
117 455 0.95
118 11 0.02
ACGTcount: A:0.23, C:0.35, G:0.24, T:0.18
Consensus pattern (117 bp):
TCAGGCACAGCTCCACTAAACCCTCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCTCC
AGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
Left flanking sequence: Indices 38567 -- 39066
TGTCCCAAAAGCTACCCCAGTCACCAGTATTGGAGGATGTGGGGCTGCTCAATGTCTGGGTGCTC
AGTTCATTCAGCGAATCTGTTGTTGCGGATATGTCGGTCCCAGCGCTAGTCTGTCGCCCACTGCT
AGATCCATCCAAACTATCAGACTCCGAAGACTCAGGATAGCTCAACGTCAGAGTAGCCAGCGACC
CGTGGGAGTCGGTGGTATCAGACAGTTGAGGTTGGCCTATAGTCAAATCAGAGTTTGTGGACGAC
GTTTCGGCGGTGCTAGAAATGTGGGAGTCTGACGAGGTGAAAGCATTGAGCAGCTCATCAGATTC
GGAGGCGCCATCAGTCATGCCAGTGTCTGTCAGCAGAGTTTTGTCTAATTCTGCATCTTCGAAAG
ACAGCTCCGTAACGCTAGACTGGTGTGAACTAAGATCACTTGAATCCAGAGCCAGCAGAGATGAC
TCTAAGTTGGTGGTGGATGGACTTACCAAACCCGATGAGTCAAAA
Right flanking sequence: Indices 39771 -- 40270
TGGTACCGCTGCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACAGCTCCACCAAACCCGTCGG
ATTGTGAAGGCTCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTCAGGTACTGCACCA
TCGAACCCGTCGGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGCTC
GGGCACAGGTCCTCCAAACCCCCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTCGG
ACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGCTCGGGCACAGGTCCT
CCAAACCCCCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTCGGACTGTGAAGGATC
AGGCACGGCACCATCAAACCCGTTGGATTGTGAAGGCTCGGGCACAGGTCCTCCAAACCCTCCAG
TCTCAGATGGCTGAGGCACCGCTCCACCAAATCCGTTGGATTGTG
Found at i:39770 original size:156 final size:156
Alignment explanation
Indices: 39083--39986 Score: 695
Period size: 156 Copynumber: 5.8 Consensus size: 156
39073 ACCGCTCCAT
* * * * * *
39083 CAAACCCTCCAGTCTCAGATGGCTGAGGCACCGCTCCACCAAACCCGTCGGAATGCGATGGCTCT
1 CAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCA
* * * *
39148 GGTACCGCTCCACCGAACCCGTCGGATTGTGAAGGCTCAGGCA-ACGCTCCACTAAAACC-TC-C
66 GGTACCGCTCCACCAAACCCGTCGGATTGTGAAGGCTCAGGCACA-GCTCCACCAAACCCGTCGG
* * * * * *
39210 ATTCTCAGATGGCTCAGGCACCGCTCCAC
130 ATTGT--GAAGGCTCGGGCACAGGTCCTC
* * * * * * * * * *
39239 CAAACCATCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACTCGTCCGACTGTGAAGGCTCT
1 CAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCA
* * * * * * *** *
39304 GGCACAGCTCCACGAGAA-ACGTCGGATTGTGAAGGCTCGGGCACAGGTTTTCCAAACCC-TC-C
66 GGTACCGCTCCACCA-AACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCCGTCGG
** * * * * *
39366 AGTCTCAGATGGCTGGGGCACCGCTCCAC
130 A-T-TGTGAAGGCTCGGGCACAGGTCCTC
* ** * * * * * * * ** *
39395 CAAACCCGT-TGGAT-TGTGAAGGCTCGGGCACAGGTCCTCCAAACCC-TCCAGTCTCAGATGGC
1 CAAACCC-TCTAG-TCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGT-CGGACTGTGAAGGC
* * * * ** * * * *
39457 TGAGGCACCGCTCCTCCAAACCC-TC-CAGTCTCAGATGGCTGAGGCACCGCTGCACCAAACCCG
63 TCAGGTACCGCTCCACCAAACCCGTCGGA-T-TGTGAAGGCTCAGGCACAGCTCCACCAAACCCG
* *
39520 TCGGATTGTGAAGGCTCAGGCA-ACGCTCCAT-
126 TCGGATTGTGAAGGCTCGGGCACA-GGTCC-TC
* * * * *
39551 TAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAATCC-TCCAGTCTCG-GATGGCT
1 CAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGT-CGGACT-GTGAAGGCT
* * * * *
39614 CAGGTACTGCACCACCAAACCCGTCGGACTGTGAAGGATCAGGCACAGCTCCATCAAACCCGTCG
64 CAGGTACCGCTCCACCAAACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCCGTCG
39679 GATTGTGAAGGCTCGGGCACAGGTCCTC
129 GATTGTGAAGGCTCGGGCACAGGTCCTC
* *
39707 CAAACCCTCTAGTCTCAGATGGCTGAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCT
1 CAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCA
* *
39772 GGTACCGCTGCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACAGCTCCACCAAACCCGTCGGA
66 GGTACCGCTCCACCAAACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCCGTCGGA
39837 TTGTGAAGGCTCGGGCACAGGTCCTC
131 TTGTGAAGGCTCGGGCACAGGTCCTC
* * * * * * *
39863 CAAACCCTCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTCGGACTGTGAAGGATCA
1 CAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCA
* * * * * * * *
39928 GGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGCTCGGGCACAGGTCCTCCAAACCC
66 GGTACCGCTCCACCAAACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCC
39987 CCCAGTCTCA
Statistics
Matches: 593, Mismatches: 132, Indels: 46
0.77 0.17 0.06
Matches are distributed among these distances:
154 1 0.00
155 10 0.02
156 565 0.95
157 13 0.02
158 4 0.01
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.18
Consensus pattern (156 bp):
CAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCA
GGTACCGCTCCACCAAACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCCGTCGGA
TTGTGAAGGCTCGGGCACAGGTCCTC
Left flanking sequence: Indices 38583 -- 39082
CCAGTCACCAGTATTGGAGGATGTGGGGCTGCTCAATGTCTGGGTGCTCAGTTCATTCAGCGAAT
CTGTTGTTGCGGATATGTCGGTCCCAGCGCTAGTCTGTCGCCCACTGCTAGATCCATCCAAACTA
TCAGACTCCGAAGACTCAGGATAGCTCAACGTCAGAGTAGCCAGCGACCCGTGGGAGTCGGTGGT
ATCAGACAGTTGAGGTTGGCCTATAGTCAAATCAGAGTTTGTGGACGACGTTTCGGCGGTGCTAG
AAATGTGGGAGTCTGACGAGGTGAAAGCATTGAGCAGCTCATCAGATTCGGAGGCGCCATCAGTC
ATGCCAGTGTCTGTCAGCAGAGTTTTGTCTAATTCTGCATCTTCGAAAGACAGCTCCGTAACGCT
AGACTGGTGTGAACTAAGATCACTTGAATCCAGAGCCAGCAGAGATGACTCTAAGTTGGTGGTGG
ATGGACTTACCAAACCCGATGAGTCAAAATCAGGTACCGCTCCAT
Right flanking sequence: Indices 39987 -- 40486
CCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTCGGACTGTGAAGGATCAGGCACGG
CTCCATCAAACCCGTTGGATTCTGAAGGCTCGGGCACAGGTCCTCCAAACCCCCCAGTCTCAGAT
GGCTCAGGTACTGCACCATCGAACCCGTCGGACTGTGAAGGATCAGGCACGGCACCATCAAACCC
GTTGGATTGTGAAGGCTCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTGAGGCACCG
CTCCACCAAATCCGTTGGATTGTGAAGGCTCAGGTACTGCACCACCAAATCCGTCGGACTGTGAA
GGCTCTGGCAACGCTCCATTAAACTCTCTAGTCTCAGATGGCTCTGGCAGCGCTCCACCGAACCC
GTCTGAATGTGAAGGCTCTGGCACTGCTCCACCAAACCCAGCGGTTTCAGATGGCTCAGGCACTG
TATTACCGAAGCCATGGGATTGAGAAGGCTCTGACAACGCTCCAC
Found at i:39779 original size:39 final size:39
Alignment explanation
Indices: 39103--40415 Score: 593
Period size: 39 Copynumber: 33.7 Consensus size: 39
39093 AGTCTCAGAT
* * * *
39103 GGCTGAGGCACCGCTCCACCAAACCCGTCGGAATGCGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * *
39142 GGCTCTGGTACCGCTCCACCGAACCCGTCGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * ** *
39181 GGCTCAGGCAACGCTCCACTAAAACC-TC-CATTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGA--CTGTGAA
* * * ** *
39220 GGCTCAGGCACCGCTCCACCAAA-CCATCCAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGT-CGGACTGTGAA
* * * * * * *
39259 GGCTCAGGTACTGCACCATCGAACTCGTCCGACTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * *
39298 GGCTCTGGCACAGCTCCACGAGAA-ACGTCGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCA-AACCCGTCGGACTGTGAA
* * * *** * * ** *
39337 GGCTCGGGCACAGGTTTTCCAAACCC-TCCAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGT-CGGACTGTGAA
** * *
39376 GGCTGGGGCACCGCTCCACCAAACCCGTTGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * * * ** *
39415 GGCTCGGGCACAGGTCCTCCAAACCC-TCCAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGT-CGGACTGTGAA
* * * * ** *
39454 GGCTGAGGCACCGCTCCTCCAAACCC-TCCAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGT-CGGACTGTGAA
* * *
39493 GGCTGAGGCACCGCTGCACCAAACCCGTCGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* ** * * ** *
39532 GGCTCAGGCAACGCTCCATTAAACCC-TCTAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGTC-GGACTGTGAA
* * * *
39571 GGCTCAGGCACCGCTCCACCAAATCC-TCCAGTCTCG-GAT
1 GGCTCAGGCACCGCTCCACCAAACCCGT-CGGACT-GTGAA
* * *
39610 GGCTCAGGTACTGCACCACCAAACCCGTCGGACTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * *
39649 GGATCAGGCACAGCTCCATCAAACCCGTCGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * * * ** *
39688 GGCTCGGGCACAGGTCCTCCAAACCC-TCTAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGTC-GGACTGTGAA
*
39727 GGCTGAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * *
39766 GGCTCTGGTACCGCTGCACCAAACCCGTCGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * *
39805 GGCTCTGGCACAGCTCCACCAAACCCGTCGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * * * ** *
39844 GGCTCGGGCACAGGTCCTCCAAACCC-TCCAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGT-CGGACTGTGAA
* * * * *
39883 GGCTCAGGTACTGCACCATCGAACCCGTCGGACTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * * *
39922 GGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * ** * * ** *
39961 GGCTCGGGCACAGGTCCTCCAAACCCCCCAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * *
40000 GGCTCAGGTACTGCACCATCGAACCCGTCGGACTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * * *
40039 GGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * ** * * ** *
40078 GGCTCGGGCACAGGTCCTCCAAACCCCCCAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * *
40117 GGCTCAGGTACTGCACCATCGAACCCGTCGGACTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * * *
40156 GGATCAGGCACGGCACCATCAAACCCGTTGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * * * * ** *
40195 GGCTCGGGCACAGGTCCTCCAAACCC-TCCAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGT-CGGACTGTGAA
* * * *
40234 GGCTGAGGCACCGCTCCACCAAATCCGTTGGATTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * * *
40273 GGCTCAGGTACTGCACCACCAAATCCGTCGGACTGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* * ** * * * ** *
40312 GGCTCTGGCAACGCTCCATTAAACTC-TCTAGTCTCAGAT
1 GGCTCAGGCACCGCTCCACCAAACCCGTC-GGACTGTGAA
* * * * *
40351 GGCTCTGGCAGCGCTCCACCGAACCCGTCTGAATGTGAA
1 GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
* *
40390 GGCTCTGGCACTGCTCCACCAAACCC
1 GGCTCAGGCACCGCTCCACCAAACCC
40416 AGCGGTTTCA
Statistics
Matches: 935, Mismatches: 314, Indels: 50
0.72 0.24 0.04
Matches are distributed among these distances:
37 1 0.00
38 17 0.02
39 902 0.96
40 15 0.02
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.18
Consensus pattern (39 bp):
GGCTCAGGCACCGCTCCACCAAACCCGTCGGACTGTGAA
Left flanking sequence: Indices 38603 -- 39102
ATGTGGGGCTGCTCAATGTCTGGGTGCTCAGTTCATTCAGCGAATCTGTTGTTGCGGATATGTCG
GTCCCAGCGCTAGTCTGTCGCCCACTGCTAGATCCATCCAAACTATCAGACTCCGAAGACTCAGG
ATAGCTCAACGTCAGAGTAGCCAGCGACCCGTGGGAGTCGGTGGTATCAGACAGTTGAGGTTGGC
CTATAGTCAAATCAGAGTTTGTGGACGACGTTTCGGCGGTGCTAGAAATGTGGGAGTCTGACGAG
GTGAAAGCATTGAGCAGCTCATCAGATTCGGAGGCGCCATCAGTCATGCCAGTGTCTGTCAGCAG
AGTTTTGTCTAATTCTGCATCTTCGAAAGACAGCTCCGTAACGCTAGACTGGTGTGAACTAAGAT
CACTTGAATCCAGAGCCAGCAGAGATGACTCTAAGTTGGTGGTGGATGGACTTACCAAACCCGAT
GAGTCAAAATCAGGTACCGCTCCATCAAACCCTCCAGTCTCAGAT
Right flanking sequence: Indices 40416 -- 40915
AGCGGTTTCAGATGGCTCAGGCACTGTATTACCGAAGCCATGGGATTGAGAAGGCTCTGACAACG
CTCCACCAAACCCTTTCAACTCAGCTGGCTCAGGTACTGCTCCGCCAAACCCTCTAAAACTGCTG
CTGGTCTCGAGCAAAGAGCTGTAATGAGAAGTCAGAGTAGGCAACGGAGACTCGGATATAGTTGG
AGATCTGTCGGTTGAGCTGTCGGTCCCAGACGAAAGAGGATGAGGTTCAGGAGCACTTGTACCAG
ACGGGTCAATCTGTGCTGACGTCAGAGACGACAGATATCCGGGAGAGCTGACACTCGGCTCAGGA
TCGCTAGCCGACATATCCTCTGCGGTCAGAGAATACGAACCACCAAAAGTTCCTGTCTCAGTTGA
ATCATAGGTAGCAGAGCTGAGAGCGCTAGAATGGCTGTTTGAACTCTCTGATGTCGATTCATCGG
TTCCACTATTCGTAGTCTCTTGAAGGTGACTAGATGTCAGGGTCA
Found at i:39854 original size:117 final size:116
Alignment explanation
Indices: 39652--40415 Score: 757
Period size: 117 Copynumber: 6.5 Consensus size: 116
39642 CTGTGAAGGA
* * * * * *
39652 TCAGGCACAGCTCCATCAAACCCGTCGGATTGTGAAGGCTCGGGCACAGG-TCCTCCAAACCC-T
1 TCAGGTACCGCTCCATCGAACCCGTCGGACTGTGAAGGCTCAGGCAC-GGCTCCACCAAACCCGT
* * * * * * * * ** *
39715 C-TAGTCTCAGATGGCT-GAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGC
65 CGGA-T-TCTGAAGGCTCG-GGCACAGGTCCTCCAAACCC-TCAGTCTCAGATGGC
* * * * * * *
39769 TCTGGTACCGCTGCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACAGCTCCACCAAACCCGTC
1 TCAGGTACCGCTCCATCGAACCCGTCGGACTGTGAAGGCTCAGGCACGGCTCCACCAAACCCGTC
*
39834 GGATTGTGAAGGCTCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGC
66 GGATTCTGAAGGCTCGGGCACAGGTCCTCCAAACCCT-CAGTCTCAGATGGC
* * * * *
39886 TCAGGTACTGCACCATCGAACCCGTCGGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTT
1 TCAGGTACCGCTCCATCGAACCCGTCGGACTGTGAAGGCTCAGGCACGGCTCCACCAAACCCGTC
*
39951 GGATTCTGAAGGCTCGGGCACAGGTCCTCCAAACCCCCCAGTCTCAGATGGC
66 GGATTCTGAAGGCTCGGGCACAGGTCCTCCAAA-CCCTCAGTCTCAGATGGC
* * * * *
40003 TCAGGTACTGCACCATCGAACCCGTCGGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTT
1 TCAGGTACCGCTCCATCGAACCCGTCGGACTGTGAAGGCTCAGGCACGGCTCCACCAAACCCGTC
*
40068 GGATTCTGAAGGCTCGGGCACAGGTCCTCCAAACCCCCCAGTCTCAGATGGC
66 GGATTCTGAAGGCTCGGGCACAGGTCCTCCAAA-CCCTCAGTCTCAGATGGC
* * * * * *
40120 TCAGGTACTGCACCATCGAACCCGTCGGACTGTGAAGGATCAGGCACGGCACCATCAAACCCGTT
1 TCAGGTACCGCTCCATCGAACCCGTCGGACTGTGAAGGCTCAGGCACGGCTCCACCAAACCCGTC
*
40185 GGATTGTGAAGGCTCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGC
66 GGATTCTGAAGGCTCGGGCACAGGTCCTCCAAACCCT-CAGTCTCAGATGGC
* * * * * * * * * * *
40237 TGAGGCACCGCTCCACCAAATCCGTTGGATTGTGAAGGCTCAGGTACTGCACCACCAAATCCGTC
1 TCAGGTACCGCTCCATCGAACCCGTCGGACTGTGAAGGCTCAGGCACGGCTCCACCAAACCCGTC
* * * * * *
40302 GGACTGTGAAGGCTCTGGCA-ACGCTCCAT-TAAACTCTCTAGTCTCAGATGGC
66 GGATTCTGAAGGCTCGGGCACA-GGTCC-TCCAAACCCTC-AGTCTCAGATGGC
* * * * * * * *
40354 TCTGGCAGCGCTCCACCGAACCCGTCTGAATGTGAAGGCTCTGGCACTGCTCCACCAAACCC
1 TCAGGTACCGCTCCATCGAACCCGTCGGACTGTGAAGGCTCAGGCACGGCTCCACCAAACCC
40416 AGCGGTTTCA
Statistics
Matches: 568, Mismatches: 69, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
116 7 0.01
117 552 0.97
118 8 0.01
119 1 0.00
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (116 bp):
TCAGGTACCGCTCCATCGAACCCGTCGGACTGTGAAGGCTCAGGCACGGCTCCACCAAACCCGTC
GGATTCTGAAGGCTCGGGCACAGGTCCTCCAAACCCTCAGTCTCAGATGGC
Left flanking sequence: Indices 39152 -- 39651
CCGCTCCACCGAACCCGTCGGATTGTGAAGGCTCAGGCAACGCTCCACTAAAACCTCCATTCTCA
GATGGCTCAGGCACCGCTCCACCAAACCATCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAA
CTCGTCCGACTGTGAAGGCTCTGGCACAGCTCCACGAGAAACGTCGGATTGTGAAGGCTCGGGCA
CAGGTTTTCCAAACCCTCCAGTCTCAGATGGCTGGGGCACCGCTCCACCAAACCCGTTGGATTGT
GAAGGCTCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTGAGGCACCGCTCCTCCAAA
CCCTCCAGTCTCAGATGGCTGAGGCACCGCTGCACCAAACCCGTCGGATTGTGAAGGCTCAGGCA
ACGCTCCATTAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAATCCTCCAGTCTCG
GATGGCTCAGGTACTGCACCACCAAACCCGTCGGACTGTGAAGGA
Right flanking sequence: Indices 40416 -- 40915
AGCGGTTTCAGATGGCTCAGGCACTGTATTACCGAAGCCATGGGATTGAGAAGGCTCTGACAACG
CTCCACCAAACCCTTTCAACTCAGCTGGCTCAGGTACTGCTCCGCCAAACCCTCTAAAACTGCTG
CTGGTCTCGAGCAAAGAGCTGTAATGAGAAGTCAGAGTAGGCAACGGAGACTCGGATATAGTTGG
AGATCTGTCGGTTGAGCTGTCGGTCCCAGACGAAAGAGGATGAGGTTCAGGAGCACTTGTACCAG
ACGGGTCAATCTGTGCTGACGTCAGAGACGACAGATATCCGGGAGAGCTGACACTCGGCTCAGGA
TCGCTAGCCGACATATCCTCTGCGGTCAGAGAATACGAACCACCAAAAGTTCCTGTCTCAGTTGA
ATCATAGGTAGCAGAGCTGAGAGCGCTAGAATGGCTGTTTGAACTCTCTGATGTCGATTCATCGG
TTCCACTATTCGTAGTCTCTTGAAGGTGACTAGATGTCAGGGTCA
Found at i:40111 original size:234 final size:234
Alignment explanation
Indices: 39782--40415 Score: 869
Period size: 234 Copynumber: 2.7 Consensus size: 234
39772 GGTACCGCTG
*
39782 CACCAAACCCGTCGGATTGTGAAGGCTCTGGCACAGCTCCACCAAACCCGTCGGATTGTGAAGGC
1 CACCAAACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCCGTCGGATTGTGAAGGC
39847 TCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTC
66 TCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTC
39912 GGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGCTCGGGCACAGGTC
131 GGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGCTCGGGCACAGGTC
* *
39977 CTCCAAACCCCCCAGTCTCAGATGGCTCAGGTACTGCAC
196 CTCCAAACCCCCCAGTCTCAGATGGCTCAGGCACCGCAC
* * * * * * * *
40016 CATCGAACCCGTCGGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGC
1 CACCAAACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCCGTCGGATTGTGAAGGC
*
40081 TCGGGCACAGGTCCTCCAAACCCCCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTC
66 TCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTC
* *
40146 GGACTGTGAAGGATCAGGCACGGCACCATCAAACCCGTTGGATTGTGAAGGCTCGGGCACAGGTC
131 GGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGCTCGGGCACAGGTC
* * *
40211 CTCCAAACCCTCCAGTCTCAGATGGCTGAGGCACCGCTC
196 CTCCAAACCCCCCAGTCTCAGATGGCTCAGGCACCGCAC
* * * * * * *
40250 CACCAAATCCGTTGGATTGTGAAGGCTCAGGTACTGCACCACCAAATCCGTCGGACTGTGAAGGC
1 CACCAAACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCCGTCGGATTGTGAAGGC
* * * * * * * * *
40315 TCTGGCA-ACGCTCCAT-TAAACTCTCTAGTCTCAGATGGCTCTGGCAGC-GCTCCACCGAACCC
66 TCGGGCACA-GGTCC-TCCAAACCCTCCAGTCTCAGATGGCTCAGGTA-CTGCACCATCGAACCC
* * * * * *
40377 GTCTGAATGTGAAGGCTCTGGCACTGCTCCACCAAACCC
128 GTCGGACTGTGAAGGATCAGGCACGGCTCCATCAAACCC
40416 AGCGGTTTCA
Statistics
Matches: 349, Mismatches: 48, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
233 1 0.00
234 346 0.99
235 2 0.01
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (234 bp):
CACCAAACCCGTCGGATTGTGAAGGCTCAGGCACAGCTCCACCAAACCCGTCGGATTGTGAAGGC
TCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTCAGGTACTGCACCATCGAACCCGTC
GGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGCTCGGGCACAGGTC
CTCCAAACCCCCCAGTCTCAGATGGCTCAGGCACCGCAC
Left flanking sequence: Indices 39282 -- 39781
CTCGTCCGACTGTGAAGGCTCTGGCACAGCTCCACGAGAAACGTCGGATTGTGAAGGCTCGGGCA
CAGGTTTTCCAAACCCTCCAGTCTCAGATGGCTGGGGCACCGCTCCACCAAACCCGTTGGATTGT
GAAGGCTCGGGCACAGGTCCTCCAAACCCTCCAGTCTCAGATGGCTGAGGCACCGCTCCTCCAAA
CCCTCCAGTCTCAGATGGCTGAGGCACCGCTGCACCAAACCCGTCGGATTGTGAAGGCTCAGGCA
ACGCTCCATTAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAATCCTCCAGTCTCG
GATGGCTCAGGTACTGCACCACCAAACCCGTCGGACTGTGAAGGATCAGGCACAGCTCCATCAAA
CCCGTCGGATTGTGAAGGCTCGGGCACAGGTCCTCCAAACCCTCTAGTCTCAGATGGCTGAGGCA
CCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCTGGTACCGCTG
Right flanking sequence: Indices 40416 -- 40915
AGCGGTTTCAGATGGCTCAGGCACTGTATTACCGAAGCCATGGGATTGAGAAGGCTCTGACAACG
CTCCACCAAACCCTTTCAACTCAGCTGGCTCAGGTACTGCTCCGCCAAACCCTCTAAAACTGCTG
CTGGTCTCGAGCAAAGAGCTGTAATGAGAAGTCAGAGTAGGCAACGGAGACTCGGATATAGTTGG
AGATCTGTCGGTTGAGCTGTCGGTCCCAGACGAAAGAGGATGAGGTTCAGGAGCACTTGTACCAG
ACGGGTCAATCTGTGCTGACGTCAGAGACGACAGATATCCGGGAGAGCTGACACTCGGCTCAGGA
TCGCTAGCCGACATATCCTCTGCGGTCAGAGAATACGAACCACCAAAAGTTCCTGTCTCAGTTGA
ATCATAGGTAGCAGAGCTGAGAGCGCTAGAATGGCTGTTTGAACTCTCTGATGTCGATTCATCGG
TTCCACTATTCGTAGTCTCTTGAAGGTGACTAGATGTCAGGGTCA
Found at i:40355 original size:156 final size:156
Alignment explanation
Indices: 39067--40439 Score: 685
Period size: 156 Copynumber: 8.8 Consensus size: 156
39057 TGAGTCAAAA
* * * * * *
39067 TCAGGTACCGCTCCATCAAACCCTCCAGTCTCAGATGGCTGAGGCACCGCTCCACCAAACCCGTC
1 TCAGGCACAGCTCCATCAAACCCTCTAGTCTCAGATGGCTCAGGCACAGCTCCTCCAAACCCGTC
* ** * * * * *
39132 GGAATGC-GATGGCTCTGGTACCGCTCCACCGAACCCGTCGGATTGTGAAGGCTCAGGCA-ACGC
66 AGTCT-CTGAAGGCTCAGGCACCGCTCCACCAAACCCGTCGGATTCTGAAGGCTCAGGCACA-GC
* * * ** *
39195 TCCACTAAAACC-TC-CATTCTCAGATGGC
129 TCCACCAAACCCGTCGGA--CTGTGAAGGC
* * * * * * * * *
39223 TCAGGCACCGCTCCACCAAACCATCCAGTCTCAGATGGCTCAGGTACTGCACCAT-CGAACTCGT
1 TCAGGCACAGCTCCATCAAACCCTCTAGTCTCAGATGGCTCAGGCACAGCTCC-TCCAAACCCGT
* * * * * * * * * *
39287 CCGACTGTGAAGGCTCTGGCACAGCTCCACGAGAA-ACGTCGGATTGTGAAGGCTCGGGCACAGG
65 CAGTCTCTGAAGGCTCAGGCACCGCTCCACCA-AACCCGTCGGATTCTGAAGGCTCAGGCACAGC
*** * * ** *
39351 TTTTCCAAACCC-TCCAGTCTCAGATGGC
129 TCCACCAAACCCGT-CGGACTGTGAAGGC
** * * * ** * * *
39379 TGGGGCACCGCTCCACCAAACCCGT-TGGAT-TGTGAAGGCTCGGGCACAGGTCCTCCAAACCC-
1 TCAGGCACAGCTCCATCAAACCC-TCTAG-TCTCAGATGGCTCAGGCACAGCTCCTCCAAACCCG
* * * * * * * *
39441 TCCAGTCTCAGATGGCTGAGGCACCGCTCCTCCAAACCC-TC-CAGTCTCAGATGGCTGAGGCAC
64 T-CAGTCTCTGAAGGCTCAGGCACCGCTCCACCAAACCCGTCGGA-T-TCTGAAGGCTCAGGCAC
* * *
39504 CGCTGCACCAAACCCGTCGGATTGTGAAGGC
126 AGCTCCACCAAACCCGTCGGACTGTGAAGGC
* * * *
39535 TCAGGCA-ACGCTCCATTAAACCCTCTAGTCTCAGATGGCTCAGGCACCGCTCCACCAAATCC-T
1 TCAGGCACA-GCTCCATCAAACCCTCTAGTCTCAGATGGCTCAGGCACAGCTCCTCCAAACCCGT
* * * * * * * *
39598 CCAGTCTCGGATGGCTCAGGTACTGCACCACCAAACCCGTCGGACTGTGAAGGATCAGGCACAGC
65 -CAGTCTCTGAAGGCTCAGGCACCGCTCCACCAAACCCGTCGGATTCTGAAGGCTCAGGCACAGC
* *
39663 TCCATCAAACCCGTCGGATTGTGAAGGC
129 TCCACCAAACCCGTCGGACTGTGAAGGC
* * * * *
39691 TCGGGCACAGGTCC-TCCAAACCCTCTAGTCTCAGATGGCTGAGGCACCGCTCCACCAAACCCGT
1 TCAGGCACAGCTCCAT-CAAACCCTCTAGTCTCAGATGGCTCAGGCACAGCTCCTCCAAACCCGT
* * * * * * * *
39755 CGGACTGTGAAGGCTCTGGTACCGCTGCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACAGCT
65 CAGTCTCTGAAGGCTCAGGCACCGCTCCACCAAACCCGTCGGATTCTGAAGGCTCAGGCACAGCT
*
39820 CCACCAAACCCGTCGGATTGTGAAGGC
130 CCACCAAACCCGTCGGACTGTGAAGGC
* * * * * * *
39847 TCGGGCACAGGTCC-TCCAAACCCTCCAGTCTCAGATGGCTCAGGTACTGCACCAT-CGAACCCG
1 TCAGGCACAGCTCCAT-CAAACCCTCTAGTCTCAGATGGCTCAGGCACAGCTCC-TCCAAACCCG
* * * * * * * * *
39910 TCGGACTGTGAAGGATCAGGCACGGCTCCATCAAACCCGTTGGATTCTGAAGGCTCGGGCACAGG
64 TCAGTCTCTGAAGGCTCAGGCACCGCTCCACCAAACCCGTCGGATTCTGAAGGCTCAGGCACAGC
* ** * * ** *
39975 TCCTCCAAACCCCCCAGTCTCAGATGGC
129 TCCACCAAACCCGTCGGACTGTGAAGGC
* * * * * * ** * * *
40003 TCAGGTACTGCACCATCGAACCCGTC-GGACTGTGAAGGATCAGGCACGGCTCCAT-CAAACCCG
1 TCAGGCACAGCTCCATCAAACCC-TCTAGTCTCAGATGGCTCAGGCACAGCTCC-TCCAAACCCG
** * * * * ** * * * * *
40066 TTGGAT-TCTGAAGGCTCGGGCACAGGTCCTCCAAACCCCCCAG-TCTCAGATGGCTCAGGTACT
64 TCAG-TCTCTGAAGGCTCAGGCACCGCTCCACCAAACCCGTCGGAT-TCTGAAGGCTCAGGCACA
* * * *
40129 GCACCATCGAACCCGTCGGACTGTGAAGGA
127 GCTCCACCAAACCCGTCGGACTGTGAAGGC
* * * ** * * *
40159 TCAGGCACGGCACCATCAAACCCGT-TGGAT-TGTGAAGGCTCGGGCACAGGTCCTCCAAACCC-
1 TCAGGCACAGCTCCATCAAACCC-TCTAG-TCTCAGATGGCTCAGGCACAGCTCCTCCAAACCCG
* * * * * * * *
40221 TCCAGTCTCAGATGGCTGAGGCACCGCTCCACCAAATCCGTTGGATTGTGAAGGCTCAGGTACTG
64 T-CAGTCTCTGAAGGCTCAGGCACCGCTCCACCAAACCCGTCGGATTCTGAAGGCTCAGGCACAG
* *
40286 CACCACCAAATCCGTCGGACTGTGAAGGC
128 CTCCACCAAACCCGTCGGACTGTGAAGGC
* * * * * *
40315 TCTGGCA-ACGCTCCATTAAACTCTCTAGTCTCAGATGGCTCTGGCAGC-GCTCCACCGAACCCG
1 TCAGGCACA-GCTCCATCAAACCCTCTAGTCTCAGATGGCTCAGGCA-CAGCTCCTCCAAACCCG
* ** * * * * * *
40378 TCTGAATGTGAAGGCTCTGGCACTGCTCCACCAAACCCAG-CGGTTTCAGATGGCTCAGGCAC
64 TCAGTCTCTGAAGGCTCAGGCACCGCTCCACCAAACCC-GTCGGATTCTGAAGGCTCAGGCAC
40440 TGTATTACCG
Statistics
Matches: 928, Mismatches: 250, Indels: 78
0.74 0.20 0.06
Matches are distributed among these distances:
154 1 0.00
155 16 0.02
156 892 0.96
157 18 0.02
158 1 0.00
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.19
Consensus pattern (156 bp):
TCAGGCACAGCTCCATCAAACCCTCTAGTCTCAGATGGCTCAGGCACAGCTCCTCCAAACCCGTC
AGTCTCTGAAGGCTCAGGCACCGCTCCACCAAACCCGTCGGATTCTGAAGGCTCAGGCACAGCTC
CACCAAACCCGTCGGACTGTGAAGGC
Left flanking sequence: Indices 38567 -- 39066
TGTCCCAAAAGCTACCCCAGTCACCAGTATTGGAGGATGTGGGGCTGCTCAATGTCTGGGTGCTC
AGTTCATTCAGCGAATCTGTTGTTGCGGATATGTCGGTCCCAGCGCTAGTCTGTCGCCCACTGCT
AGATCCATCCAAACTATCAGACTCCGAAGACTCAGGATAGCTCAACGTCAGAGTAGCCAGCGACC
CGTGGGAGTCGGTGGTATCAGACAGTTGAGGTTGGCCTATAGTCAAATCAGAGTTTGTGGACGAC
GTTTCGGCGGTGCTAGAAATGTGGGAGTCTGACGAGGTGAAAGCATTGAGCAGCTCATCAGATTC
GGAGGCGCCATCAGTCATGCCAGTGTCTGTCAGCAGAGTTTTGTCTAATTCTGCATCTTCGAAAG
ACAGCTCCGTAACGCTAGACTGGTGTGAACTAAGATCACTTGAATCCAGAGCCAGCAGAGATGAC
TCTAAGTTGGTGGTGGATGGACTTACCAAACCCGATGAGTCAAAA
Right flanking sequence: Indices 40440 -- 40939
TGTATTACCGAAGCCATGGGATTGAGAAGGCTCTGACAACGCTCCACCAAACCCTTTCAACTCAG
CTGGCTCAGGTACTGCTCCGCCAAACCCTCTAAAACTGCTGCTGGTCTCGAGCAAAGAGCTGTAA
TGAGAAGTCAGAGTAGGCAACGGAGACTCGGATATAGTTGGAGATCTGTCGGTTGAGCTGTCGGT
CCCAGACGAAAGAGGATGAGGTTCAGGAGCACTTGTACCAGACGGGTCAATCTGTGCTGACGTCA
GAGACGACAGATATCCGGGAGAGCTGACACTCGGCTCAGGATCGCTAGCCGACATATCCTCTGCG
GTCAGAGAATACGAACCACCAAAAGTTCCTGTCTCAGTTGAATCATAGGTAGCAGAGCTGAGAGC
GCTAGAATGGCTGTTTGAACTCTCTGATGTCGATTCATCGGTTCCACTATTCGTAGTCTCTTGAA
GGTGACTAGATGTCAGGGTCATCAATGAACTGTGGGAATCCGAAG
Found at i:42224 original size:78 final size:79
Alignment explanation
Indices: 42127--42282 Score: 242
Period size: 81 Copynumber: 2.0 Consensus size: 79
42117 AGCCAATTGA
* * * * *
42127 GATTGACTCGTAGTGGGGGT-GGTTGTCCCATTAGAGTCACTATCGTCACCACTCAGTTCGCCAT
1 GATTGACCCGAAGTGGGGGTGGGTTGACCCACTAGAGTCACTATCGTCACCACTCAGTTCGCCAC
42191 TGGTGGTAGTCGAG
66 TGGTGGTAGTCGAG
42205 GATTGACCCGAAGTGGGGGTGGCGGTTGACCCACTAGAGTCACTATCGTCACCACTCAGTTCGCC
1 GATTGACCCGAAGTGGGGGT-G-GGTTGACCCACTAGAGTCACTATCGTCACCACTCAGTTCGCC
42270 ACTGGTGGTAGTC
64 ACTGGTGGTAGTC
42283 AATGACCCAC
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
78 18 0.26
81 52 0.74
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (79 bp):
GATTGACCCGAAGTGGGGGTGGGTTGACCCACTAGAGTCACTATCGTCACCACTCAGTTCGCCAC
TGGTGGTAGTCGAG
Left flanking sequence: Indices 41627 -- 42126
CGACGGTGGAGTCCAATGAATCCCATGAATTATCATCGATGGAGGTGACAGACAGTTGAGAGGAA
GCTGAGTTGTTTGAAGCCTGAGATATCGAGTCTTGGGAAGAAGATGTAATGGCTGAAACACTAGT
TTTGGAATGTTGGTCATTGCTCGAGGTTGCCGTTACATGAGACTCGAAGTAATCATCAGGCACAA
TCTCAAAATCGTCGACTAGATCGGGCAAGCTATGGGTGTCCCAAAAGTCGTCGTAGCTGGCAGTT
TTAGACAATCCAGAAATGATGGAGGTCAGATCATGGGAAGTGATAGTTGATTCCGTGATGTCTCC
ATCGGAGGTCAGGCCTGTACTAGTGCCAATTAACGAACTAAAGCTTGAAGTGTCCGACAGCTGCA
GTGTAGCAAGCGTCTCATGTGAGTCGGTAGTTTCTAGCAACCTGGAGTGGCTTGTAGTCAGTTGG
GATCCAGTCACCAAGTGCGTTGTGCTTTCGGTGTCAGCCAATTGA
Right flanking sequence: Indices 42283 -- 42782
AATGACCCACTCGAACTACTTTCAACTGATTCAAAGTAGCTCGACAACAGAGTGACCAACGACCC
GTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACTGAGTCCAGCTGGGAATCAGTTTCCAGTG
GTGTATACAGCTTCTCGGCCCCAGAAGTGGATGGGACGTTACCACTCAGTTCACCACTGGTGGTA
ACCAACGACCCGCTCGAACTACTTTCCACTGATTCAAAGTAGCTCGACAACAGAGTGGCCAGCGA
CCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACTGAGTCCAGTTGGGAATCAGTTTCCA
GTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATGGGACGCTCGTGGTTTGAGTGTTTGATGAT
TCGTAGGTCAGCTCCACCACTGAGACACTGTTGCTTGTCAGATCTGCTTCATCACCTAAAAACTC
CAGACTTGCTGATTCAGACGTGTCAAACAGGATCAGCTCCACCAA
Found at i:42598 original size:198 final size:198
Alignment explanation
Indices: 42255--42648 Score: 698
Period size: 198 Copynumber: 2.0 Consensus size: 198
42245 CACTATCGTC
* ** *
42255 ACCACTCAGTTCGCCACTGGTGGTAGTCAATGACCCACTCGAACTACTTTCAACTGATTCAAAGT
1 ACCACTCAGTTCACCACTGGTGGTAACCAACGACCCACTCGAACTACTTTCAACTGATTCAAAGT
42320 AGCTCGACAACAGAGTGACCAACGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACT
66 AGCTCGACAACAGAGTGACCAACGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACT
*
42385 GAGTCCAGCTGGGAATCAGTTTCCAGTGGTGTATACAGCTTCTCGGCCCCAGAAGTGGATGGGAC
131 GAGTCCAGCTGGGAATCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATGGGAC
42450 GTT
196 GTT
* *
42453 ACCACTCAGTTCACCACTGGTGGTAACCAACGACCCGCTCGAACTACTTTCCACTGATTCAAAGT
1 ACCACTCAGTTCACCACTGGTGGTAACCAACGACCCACTCGAACTACTTTCAACTGATTCAAAGT
* *
42518 AGCTCGACAACAGAGTGGCCAGCGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACT
66 AGCTCGACAACAGAGTGACCAACGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACT
*
42583 GAGTCCAGTTGGGAATCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATGGGAC
131 GAGTCCAGCTGGGAATCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATGGGAC
42648 G
196 G
42649 CTCGTGGTTT
Statistics
Matches: 186, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
198 186 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.23
Consensus pattern (198 bp):
ACCACTCAGTTCACCACTGGTGGTAACCAACGACCCACTCGAACTACTTTCAACTGATTCAAAGT
AGCTCGACAACAGAGTGACCAACGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACT
GAGTCCAGCTGGGAATCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATGGGAC
GTT
Left flanking sequence: Indices 41755 -- 42254
GTTTTGGAATGTTGGTCATTGCTCGAGGTTGCCGTTACATGAGACTCGAAGTAATCATCAGGCAC
AATCTCAAAATCGTCGACTAGATCGGGCAAGCTATGGGTGTCCCAAAAGTCGTCGTAGCTGGCAG
TTTTAGACAATCCAGAAATGATGGAGGTCAGATCATGGGAAGTGATAGTTGATTCCGTGATGTCT
CCATCGGAGGTCAGGCCTGTACTAGTGCCAATTAACGAACTAAAGCTTGAAGTGTCCGACAGCTG
CAGTGTAGCAAGCGTCTCATGTGAGTCGGTAGTTTCTAGCAACCTGGAGTGGCTTGTAGTCAGTT
GGGATCCAGTCACCAAGTGCGTTGTGCTTTCGGTGTCAGCCAATTGAGATTGACTCGTAGTGGGG
GTGGTTGTCCCATTAGAGTCACTATCGTCACCACTCAGTTCGCCATTGGTGGTAGTCGAGGATTG
ACCCGAAGTGGGGGTGGCGGTTGACCCACTAGAGTCACTATCGTC
Right flanking sequence: Indices 42649 -- 43148
CTCGTGGTTTGAGTGTTTGATGATTCGTAGGTCAGCTCCACCACTGAGACACTGTTGCTTGTCAG
ATCTGCTTCATCACCTAAAAACTCCAGACTTGCTGATTCAGACGTGTCAAACAGGATCAGCTCCA
CCAATGACTCCTCAGAATCGTGTGTTTCGACCGAATGAGAAAAATACGGGCTCAGATCAGCCGTC
GATGAAGACTCGACGGTTGTGATTATAGTCTCAGAATAGTTTGAGCTCAGCTCAGCCGTCGATAA
AGACTCGGTGGATGTCAGTATACTCTCAGAATAGTTTGAGCTCAGTTCAGCTGTAGAAGAAGACG
ATGTAACCTCAGAATATACTGAGCTGAACTCCGCTGTGGTTGCAAACTCCGTTGACGACAGTGTA
GACTCCGCTGTTTGGCTAAAAAGAGAGCTCAGTTCAGCCGTAGATGAAGATTCCAGCGAAGACAG
TGTTGGTTCTGGCTTCTCGGCCGTTGAGGTACAAGCACCACATTT
Found at i:42901 original size:60 final size:60
Alignment explanation
Indices: 42828--42959 Score: 183
Period size: 60 Copynumber: 2.2 Consensus size: 60
42818 AAAAATACGG
* * * * *
42828 GCTCAGATCAGCCGTCGATGAAGACTCGACGGTTGTGATTATAGTCTCAGAATAGTTTGA
1 GCTCAGATCAGCCGTCGATAAAGACTCGACGGATGTCAGTATACTCTCAGAATAGTTTGA
* **
42888 GCTCAGCTCAGCCGTCGATAAAGACTCGGTGGATGTCAGTATACTCTCAGAATAGTTTGA
1 GCTCAGATCAGCCGTCGATAAAGACTCGACGGATGTCAGTATACTCTCAGAATAGTTTGA
*
42948 GCTCAGTTCAGC
1 GCTCAGATCAGC
42960 TGTAGAAGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (60 bp):
GCTCAGATCAGCCGTCGATAAAGACTCGACGGATGTCAGTATACTCTCAGAATAGTTTGA
Left flanking sequence: Indices 42328 -- 42827
AACAGAGTGACCAACGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACTGAGTCCAG
CTGGGAATCAGTTTCCAGTGGTGTATACAGCTTCTCGGCCCCAGAAGTGGATGGGACGTTACCAC
TCAGTTCACCACTGGTGGTAACCAACGACCCGCTCGAACTACTTTCCACTGATTCAAAGTAGCTC
GACAACAGAGTGGCCAGCGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACTGAGTC
CAGTTGGGAATCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATGGGACGCTCG
TGGTTTGAGTGTTTGATGATTCGTAGGTCAGCTCCACCACTGAGACACTGTTGCTTGTCAGATCT
GCTTCATCACCTAAAAACTCCAGACTTGCTGATTCAGACGTGTCAAACAGGATCAGCTCCACCAA
TGACTCCTCAGAATCGTGTGTTTCGACCGAATGAGAAAAATACGG
Right flanking sequence: Indices 42960 -- 43459
TGTAGAAGAAGACGATGTAACCTCAGAATATACTGAGCTGAACTCCGCTGTGGTTGCAAACTCCG
TTGACGACAGTGTAGACTCCGCTGTTTGGCTAAAAAGAGAGCTCAGTTCAGCCGTAGATGAAGAT
TCCAGCGAAGACAGTGTTGGTTCTGGCTTCTCGGCCGTTGAGGTACAAGCACCACATTTTGGGTC
AGTCGCAGCTCCTGAAGGGACGGGTCCATGGTACTCAATTGCATCACGGATCGGGAACCCAAAGG
ACAGGAATAATCTGGTCACAATCGCAAATCGATTGGGATCGTAACCAGGACCGATATCAAACTTT
TGATTAGTAAATCCAAAGTAGTCAAGATTGAGAGTGAGAATATTTCCTGAATACGAGAAACTGAA
GATCTTCATTGAATTGCCGATCTTCATTCCCTCACCAAAACCTCGCACAGTGTAATAACTGTTTG
ACCATCCCCAAGAGGACGTTAAAATCTCTCCTGTCGAACCCGGGC
Found at i:45599 original size:16 final size:16
Alignment explanation
Indices: 45574--45607 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
45564 CAAAATCGAA
* *
45574 CAGCTTAGGTCTGAAT
1 CAGCTAAGGTCTAAAT
45590 CAGCTAAGGTCTAAAT
1 CAGCTAAGGTCTAAAT
45606 CA
1 CA
45608 CTCGGAAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (16 bp):
CAGCTAAGGTCTAAAT
Left flanking sequence: Indices 45074 -- 45573
GCTCATATATCTTGGTTGGATATATCAATTCACTGTGGCGCGCTCAATTGCAAAGCCTTTGTGGC
CTGGGCTTGGTTTTGTGTATGACAGGGTTCCAGTAGACACCTTGTAGAAACATGGTGAGATTGCA
ACGTATGGATAGGGGAGAGAGCCCCAAGGGTTAAATACGCCATGGCGTGATAAAAGTTTACGTAA
TAATTTACCAGAGGCCAGTGTTTTCCGGACTAGTTGCAAAAGATGGATCGAAAGTGCTCTGAAAG
CGTGCTTACTAAGTATTAGTAACCGTTTCGGTAGTTTCTCGTTCGATGTTCATCATCTTAAATGG
GCATTGGTTTCAGGAATAAAATTCTTTGGATTCTATGGGTGATTCTGAAACTGCTTTCCGCTACT
CCCCAATCGTTTCTACAATCTGAAGATTGTCCTCTTTGGTTTACATCCAATGGCTGCAAAACGTC
ACCCCCTCCCTGGCTGGACAGTTCGCTTAGGTTGTCAAAATCGAA
Right flanking sequence: Indices 45608 -- 46107
CTCGGAAGATTCTCGCACTGTTTGAATTGATCCAGAGAACCTTTTACATCAAGCAAAGCCCCTTA
TCAAAATGACTGATTTGCTTTCAAATAGATCCGATGGGAAGCATGACCGTTGGATAAACGCGTCT
ACAAGCGAAGGTTGTGAGCTGCAGAAGCACGACAACACCCGGTGAAGTTGAGTGTCTGTCAATAT
TCTGCCCTGATTGTCTACCTGAACCAAACTGACAACGCTAACCATCACTACTCCCAGCAACACCC
TGCTCAATTGGTCAAATTACACGTGTTCAATCAAGTATCTGTCGCACCATGTCGTTGTTCGTATT
TGCCACACACTTCCAGGGGCGCATGCACCTGATAATTCGGACCTATGTGCACGTCGTGATCTGGT
GATATAAGACCACCCAGCGAGCCCATCTTTTATCATGTGGTGGACTCTCATTGTCTCCCTCGTGA
TATTCTGGTGGATTGCCGACAGCTTCCTTGTGGGTGTCCGCCGTA
Found at i:49350 original size:24 final size:24
Alignment explanation
Indices: 49323--49393 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
49313 GTCTCTGGTG
49323 CTGAGCTGACTGCCTCCTCCACCA
1 CTGAGCTGACTGCCTCCTCCACCA
*
49347 CTGA---G--T-CCTCCTCCA-AA
1 CTGAGCTGACTGCCTCCTCCACCA
49364 GCTGAGCTGACTGCCTCCTCCACCA
1 -CTGAGCTGACTGCCTCCTCCACCA
49389 CTGAG
1 CTGAG
49394 TCCGCCTCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
17 1 0.03
18 13 0.35
19 1 0.03
21 2 0.05
23 1 0.03
24 18 0.49
25 1 0.03
ACGTcount: A:0.18, C:0.42, G:0.18, T:0.21
Consensus pattern (24 bp):
CTGAGCTGACTGCCTCCTCCACCA
Left flanking sequence: Indices 48823 -- 49322
CGCTGACCACTGTAAAGCCCGCACTTACACCGCTGTTCAGGGTGATGAATGTTTCTGTTTAGACC
GAATGCCAACAAGTAAGGAGGGGAGGTGTGTTACGCCTTGCTCCGGATTTGGCTTGCTCCGTTGT
GGGGGTCCAAGTGCCTACAGCATCTACCAGATAGGCGATGAGGAAGACGACACAGGCGACGACTC
TGAAGCGGGAAAAAATGCCCTTGAGACCCTGTCGCCGGAACTGGACGCCAGAAGGCATGGTGAGC
TGGACAAGCAGACCGAGATTTTGAAGACCAACGCCCTGCTGGGCGGGACAGTGTCAAGTCAGCAA
GGGCAGCTGGATGGAACTTCTGAGACTAATCTGTCGCCGTCTGACGTCTCACAGGCCTCTTTCAC
AGAGCCTCAGACCGAGTCAAGCAGCGAGAATGAAGGGTCCACTGCGTCAAAGACTGAGAGCGTGG
AGTCCAGTGCTGAGGTGACCTCCAACCAGGACTCCGTCTCTGGTG
Right flanking sequence: Indices 49394 -- 49893
TCCGCCTCCAAAGCTGAGCTGCTGGTAAACTCAGCTAACACAAACTCCACTGCCCAAGAACTGAC
TACAGAAGCTGAAAAGACACAATCCGCGTCCAAGTCCGACAACGCTGGCGCCACCGTAGGGGTTG
GTGCGGTTGTAGGCTTGCTTGTGCTTGTGATGTTGTAATAAACTCTGAAGAGTGATCTAGAGTGA
TCTAATTCAATAGCGTCCTAGGATAGTGACGCTCATAATGGCATTTAATACACCGAATATGAACC
ACTGCTCTTCACACCTAAATGGCACTCTCAATCCTGAATGGGGTACTCTCAATCCTGAATGGGAT
ACTCTCTATCATCTCGTCTAAATTCTTCAGTGGTCTAGGTCACGTCTGTTTGGTAGCCAAGCTGA
AAATACCGGTAGCGTTTGACCTGTGCCTAAATAATTTCAGTCGCGACGGACCTATGCTTTCGTAA
TAAAGTTCGTAACGGACCGATACCCGACTCGTATCCCGCCCAAAG
Found at i:49358 original size:18 final size:18
Alignment explanation
Indices: 49335--49403 Score: 57
Period size: 18 Copynumber: 3.5 Consensus size: 18
49325 GAGCTGACTG
49335 CCTCCTCCACCACTGAGT
1 CCTCCTCCACCACTGAGT
* *
49353 CCTCCTCCAAAGCTGAGCTGACT
1 CCTCCTCC--A-C-CA-CTGAGT
49376 GCCTCCTCCACCACTGAGT
1 -CCTCCTCCACCACTGAGT
*
49395 CCGCCTCCA
1 CCTCCTCCA
49404 AAGCTGAGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 16 0.40
19 5 0.12
20 2 0.05
21 2 0.05
22 2 0.05
23 5 0.12
24 8 0.20
ACGTcount: A:0.17, C:0.48, G:0.14, T:0.20
Consensus pattern (18 bp):
CCTCCTCCACCACTGAGT
Left flanking sequence: Indices 48835 -- 49334
TAAAGCCCGCACTTACACCGCTGTTCAGGGTGATGAATGTTTCTGTTTAGACCGAATGCCAACAA
GTAAGGAGGGGAGGTGTGTTACGCCTTGCTCCGGATTTGGCTTGCTCCGTTGTGGGGGTCCAAGT
GCCTACAGCATCTACCAGATAGGCGATGAGGAAGACGACACAGGCGACGACTCTGAAGCGGGAAA
AAATGCCCTTGAGACCCTGTCGCCGGAACTGGACGCCAGAAGGCATGGTGAGCTGGACAAGCAGA
CCGAGATTTTGAAGACCAACGCCCTGCTGGGCGGGACAGTGTCAAGTCAGCAAGGGCAGCTGGAT
GGAACTTCTGAGACTAATCTGTCGCCGTCTGACGTCTCACAGGCCTCTTTCACAGAGCCTCAGAC
CGAGTCAAGCAGCGAGAATGAAGGGTCCACTGCGTCAAAGACTGAGAGCGTGGAGTCCAGTGCTG
AGGTGACCTCCAACCAGGACTCCGTCTCTGGTGCTGAGCTGACTG
Right flanking sequence: Indices 49404 -- 49903
AAGCTGAGCTGCTGGTAAACTCAGCTAACACAAACTCCACTGCCCAAGAACTGACTACAGAAGCT
GAAAAGACACAATCCGCGTCCAAGTCCGACAACGCTGGCGCCACCGTAGGGGTTGGTGCGGTTGT
AGGCTTGCTTGTGCTTGTGATGTTGTAATAAACTCTGAAGAGTGATCTAGAGTGATCTAATTCAA
TAGCGTCCTAGGATAGTGACGCTCATAATGGCATTTAATACACCGAATATGAACCACTGCTCTTC
ACACCTAAATGGCACTCTCAATCCTGAATGGGGTACTCTCAATCCTGAATGGGATACTCTCTATC
ATCTCGTCTAAATTCTTCAGTGGTCTAGGTCACGTCTGTTTGGTAGCCAAGCTGAAAATACCGGT
AGCGTTTGACCTGTGCCTAAATAATTTCAGTCGCGACGGACCTATGCTTTCGTAATAAAGTTCGT
AACGGACCGATACCCGACTCGTATCCCGCCCAAAGCGGACAGAGC
Found at i:49368 original size:42 final size:42
Alignment explanation
Indices: 49322--49414 Score: 177
Period size: 42 Copynumber: 2.2 Consensus size: 42
49312 CGTCTCTGGT
*
49322 GCTGAGCTGACTGCCTCCTCCACCACTGAGTCCTCCTCCAAA
1 GCTGAGCTGACTGCCTCCTCCACCACTGAGTCCGCCTCCAAA
49364 GCTGAGCTGACTGCCTCCTCCACCACTGAGTCCGCCTCCAAA
1 GCTGAGCTGACTGCCTCCTCCACCACTGAGTCCGCCTCCAAA
49406 GCTGAGCTG
1 GCTGAGCTG
49415 CTGGTAAACT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.18, C:0.41, G:0.20, T:0.20
Consensus pattern (42 bp):
GCTGAGCTGACTGCCTCCTCCACCACTGAGTCCGCCTCCAAA
Left flanking sequence: Indices 48822 -- 49321
GCGCTGACCACTGTAAAGCCCGCACTTACACCGCTGTTCAGGGTGATGAATGTTTCTGTTTAGAC
CGAATGCCAACAAGTAAGGAGGGGAGGTGTGTTACGCCTTGCTCCGGATTTGGCTTGCTCCGTTG
TGGGGGTCCAAGTGCCTACAGCATCTACCAGATAGGCGATGAGGAAGACGACACAGGCGACGACT
CTGAAGCGGGAAAAAATGCCCTTGAGACCCTGTCGCCGGAACTGGACGCCAGAAGGCATGGTGAG
CTGGACAAGCAGACCGAGATTTTGAAGACCAACGCCCTGCTGGGCGGGACAGTGTCAAGTCAGCA
AGGGCAGCTGGATGGAACTTCTGAGACTAATCTGTCGCCGTCTGACGTCTCACAGGCCTCTTTCA
CAGAGCCTCAGACCGAGTCAAGCAGCGAGAATGAAGGGTCCACTGCGTCAAAGACTGAGAGCGTG
GAGTCCAGTGCTGAGGTGACCTCCAACCAGGACTCCGTCTCTGGT
Right flanking sequence: Indices 49415 -- 49914
CTGGTAAACTCAGCTAACACAAACTCCACTGCCCAAGAACTGACTACAGAAGCTGAAAAGACACA
ATCCGCGTCCAAGTCCGACAACGCTGGCGCCACCGTAGGGGTTGGTGCGGTTGTAGGCTTGCTTG
TGCTTGTGATGTTGTAATAAACTCTGAAGAGTGATCTAGAGTGATCTAATTCAATAGCGTCCTAG
GATAGTGACGCTCATAATGGCATTTAATACACCGAATATGAACCACTGCTCTTCACACCTAAATG
GCACTCTCAATCCTGAATGGGGTACTCTCAATCCTGAATGGGATACTCTCTATCATCTCGTCTAA
ATTCTTCAGTGGTCTAGGTCACGTCTGTTTGGTAGCCAAGCTGAAAATACCGGTAGCGTTTGACC
TGTGCCTAAATAATTTCAGTCGCGACGGACCTATGCTTTCGTAATAAAGTTCGTAACGGACCGAT
ACCCGACTCGTATCCCGCCCAAAGCGGACAGAGCGAACACGGGAA
Found at i:49702 original size:21 final size:21
Alignment explanation
Indices: 49677--49724 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
49667 CCTAAATGGC
*
49677 ACTCTCAATCCTGAATGGGGT
1 ACTCTCAATCCTGAATGGGAT
49698 ACTCTCAATCCTGAATGGGAT
1 ACTCTCAATCCTGAATGGGAT
49719 ACTCTC
1 ACTCTC
49725 TATCATCTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (21 bp):
ACTCTCAATCCTGAATGGGAT
Left flanking sequence: Indices 49177 -- 49676
TCTGTCGCCGTCTGACGTCTCACAGGCCTCTTTCACAGAGCCTCAGACCGAGTCAAGCAGCGAGA
ATGAAGGGTCCACTGCGTCAAAGACTGAGAGCGTGGAGTCCAGTGCTGAGGTGACCTCCAACCAG
GACTCCGTCTCTGGTGCTGAGCTGACTGCCTCCTCCACCACTGAGTCCTCCTCCAAAGCTGAGCT
GACTGCCTCCTCCACCACTGAGTCCGCCTCCAAAGCTGAGCTGCTGGTAAACTCAGCTAACACAA
ACTCCACTGCCCAAGAACTGACTACAGAAGCTGAAAAGACACAATCCGCGTCCAAGTCCGACAAC
GCTGGCGCCACCGTAGGGGTTGGTGCGGTTGTAGGCTTGCTTGTGCTTGTGATGTTGTAATAAAC
TCTGAAGAGTGATCTAGAGTGATCTAATTCAATAGCGTCCTAGGATAGTGACGCTCATAATGGCA
TTTAATACACCGAATATGAACCACTGCTCTTCACACCTAAATGGC
Right flanking sequence: Indices 49725 -- 50224
TATCATCTCGTCTAAATTCTTCAGTGGTCTAGGTCACGTCTGTTTGGTAGCCAAGCTGAAAATAC
CGGTAGCGTTTGACCTGTGCCTAAATAATTTCAGTCGCGACGGACCTATGCTTTCGTAATAAAGT
TCGTAACGGACCGATACCCGACTCGTATCCCGCCCAAAGCGGACAGAGCGAACACGGGAACCGTG
GCCCGCATTCCGTTGCAACGAGCAACCACCCCTACTCAATTACTCCTCCGGTCCATCTTCCCCTC
ATTCGCAACTATTTAATCACCCAACATTCCCTGCGTTGCTCGGAAATTTCTAGCTCAAAGAACCA
CTGATCTACCAATAACTAAACTACAAACAGCTAAACTAAAACCACAATGTGATCAAGCCCAGCAA
CACCCACCAGACCGCCCACTTGACCGCCCACTTTCACACTCTAATCCCGCCGTACCCCACGCGCG
ACGTGGCGATTGCGAGCCCCGCACCAACGCGTTTATGTTTTCGCC
Found at i:52655 original size:21 final size:21
Alignment explanation
Indices: 52610--52656 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
52600 GGCGTGGTGG
* *
52610 GTGGTCTACAGTGGGGATGGG
1 GTGGTCTACAGTGGGGATAGC
*
52631 GTGGTCTACAGTGGGGCTAGC
1 GTGGTCTACAGTGGGGATAGC
52652 GTGGT
1 GTGGT
52657 TGTGGGGTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.13, C:0.13, G:0.49, T:0.26
Consensus pattern (21 bp):
GTGGTCTACAGTGGGGATAGC
Left flanking sequence: Indices 52110 -- 52609
CTTGGACTCGGTGTCGATCAAGGACGACCGGATCTTGTTGTTGGACACCTTTTTCCACATTTTGA
TTTTCCACGGCAAGACGATTGCCCAGTGGAAGAAGGCGGGGTACCAGGACCAGCCCGAGTACGAG
AACTTCCGCCAGTTGTTGGACGAGCCCAAGCAGGAGGCCAAGGAGCTTTTGATCGACCGGTACCC
GTTGCCGCGGTACATTGTCACCGAGGAGGGCGGGTCGCAGGCGCGGTTCTTGTTGTCGAAGCTTA
ACCCTTCGACCACCTACAACTCGAACGAGTTTGCCACCAACAACGGCGCCATTGTGTTGACCGAC
GACGTGTCGTTGCAGGTGTTTATGGACCACTTGCGCAAGTTGGTGGTGTCGGGGTCGAGCTAGAT
AGGGGAAAATGAATGTAATATAGTGGGATGATGGGTGTAGGGGAAGGTAGTGGGGGGTATTGGAG
GGGTGTAGATTAAGGGAGGTAATGGACGTAGTTTGGGCGTGGTGG
Right flanking sequence: Indices 52657 -- 53156
TGTGGGGTGGTACTGGAGTTGGGGAATTAGCCTATTTAGTGGTGAGCTAGCCTATTTGTAGTGGG
GAGTTCGCCTATCGGTGGTGGGAAGGCCTATCTGGTGGGGAGCTAGCCTATTTCTACGTTGTGGC
ATATCACGTGACTCCATTTATTCATCTCCTGCATGTAACTGGCTGCAAAACTACTCTGGCAACAA
CGGGTTCTCCTCGTTGTCGATTTCCTCCGAGCAAAGGCCCAAAAAGTCAAGGGCCACCACCAAAA
AGATCCCCACCGAGAGCAGCACGTGCGGTAAGCTCTCCTTAAACAGAAACAACGTGTTGGCAATG
GTGATCAACGAGTTGTAGATGGGCACGTCACACATTCTCATGCGGATAACCCCACTAACAATGGT
ACCGGCGATCCACAACAGCCGGAGCAAGATCTGAGCCGGGGTCAACGAGGGCCAGTCGCGGACGA
GACGCCAGAGGAGCTCGGCCAAAAGGATCCATCCGGGGGTGTGGG
Found at i:52731 original size:22 final size:21
Alignment explanation
Indices: 52676--52733 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 21
52666 GTACTGGAGT
*
52676 TGGGGAATTAGCCTA-TTTAG
1 TGGGGAGTTAGCCTATTTTAG
* *
52696 TGGTGAGCTAGCCTATTTGTAG
1 TGGGGAGTTAGCCTATTT-TAG
*
52718 TGGGGAGTTCGCCTAT
1 TGGGGAGTTAGCCTAT
52734 CGGTGGTGGG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 12 0.40
21 2 0.07
22 16 0.53
ACGTcount: A:0.19, C:0.14, G:0.33, T:0.34
Consensus pattern (21 bp):
TGGGGAGTTAGCCTATTTTAG
Left flanking sequence: Indices 52176 -- 52675
TTTCCACGGCAAGACGATTGCCCAGTGGAAGAAGGCGGGGTACCAGGACCAGCCCGAGTACGAGA
ACTTCCGCCAGTTGTTGGACGAGCCCAAGCAGGAGGCCAAGGAGCTTTTGATCGACCGGTACCCG
TTGCCGCGGTACATTGTCACCGAGGAGGGCGGGTCGCAGGCGCGGTTCTTGTTGTCGAAGCTTAA
CCCTTCGACCACCTACAACTCGAACGAGTTTGCCACCAACAACGGCGCCATTGTGTTGACCGACG
ACGTGTCGTTGCAGGTGTTTATGGACCACTTGCGCAAGTTGGTGGTGTCGGGGTCGAGCTAGATA
GGGGAAAATGAATGTAATATAGTGGGATGATGGGTGTAGGGGAAGGTAGTGGGGGGTATTGGAGG
GGTGTAGATTAAGGGAGGTAATGGACGTAGTTTGGGCGTGGTGGGTGGTCTACAGTGGGGATGGG
GTGGTCTACAGTGGGGCTAGCGTGGTTGTGGGGTGGTACTGGAGT
Right flanking sequence: Indices 52734 -- 53233
CGGTGGTGGGAAGGCCTATCTGGTGGGGAGCTAGCCTATTTCTACGTTGTGGCATATCACGTGAC
TCCATTTATTCATCTCCTGCATGTAACTGGCTGCAAAACTACTCTGGCAACAACGGGTTCTCCTC
GTTGTCGATTTCCTCCGAGCAAAGGCCCAAAAAGTCAAGGGCCACCACCAAAAAGATCCCCACCG
AGAGCAGCACGTGCGGTAAGCTCTCCTTAAACAGAAACAACGTGTTGGCAATGGTGATCAACGAG
TTGTAGATGGGCACGTCACACATTCTCATGCGGATAACCCCACTAACAATGGTACCGGCGATCCA
CAACAGCCGGAGCAAGATCTGAGCCGGGGTCAACGAGGGCCAGTCGCGGACGAGACGCCAGAGGA
GCTCGGCCAAAAGGATCCATCCGGGGGTGTGGGTGATTGCTTGTTTACCGAGTTTGGCGACAGTA
AAAGACATTTGGGGTCGGGTGGTGGTCGCGTGGTATTCTGGAGGC
Found at i:52770 original size:20 final size:20
Alignment explanation
Indices: 52684--52772 Score: 58
Period size: 20 Copynumber: 4.4 Consensus size: 20
52674 GTTGGGGAAT
* * *
52684 TAGCCTATTTAGTGGTGAGC
1 TAGCCTATCTGGTGGGGAGC
* *
52704 TAGCCTATTTGTAGTGGGGAGT
1 TAGCCTATCTG--GTGGGGAGC
*
52726 TCGCCTATC-GGTGGTGG-G-
1 TAGCCTATCTGGTGG-GGAGC
*
52744 AAGGCCTATCTGGTGGGGAGC
1 TA-GCCTATCTGGTGGGGAGC
52765 TAGCCTAT
1 TAGCCTAT
52773 TTCTACGTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
19 14 0.26
20 24 0.44
21 2 0.04
22 14 0.26
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.30
Consensus pattern (20 bp):
TAGCCTATCTGGTGGGGAGC
Left flanking sequence: Indices 52184 -- 52683
GCAAGACGATTGCCCAGTGGAAGAAGGCGGGGTACCAGGACCAGCCCGAGTACGAGAACTTCCGC
CAGTTGTTGGACGAGCCCAAGCAGGAGGCCAAGGAGCTTTTGATCGACCGGTACCCGTTGCCGCG
GTACATTGTCACCGAGGAGGGCGGGTCGCAGGCGCGGTTCTTGTTGTCGAAGCTTAACCCTTCGA
CCACCTACAACTCGAACGAGTTTGCCACCAACAACGGCGCCATTGTGTTGACCGACGACGTGTCG
TTGCAGGTGTTTATGGACCACTTGCGCAAGTTGGTGGTGTCGGGGTCGAGCTAGATAGGGGAAAA
TGAATGTAATATAGTGGGATGATGGGTGTAGGGGAAGGTAGTGGGGGGTATTGGAGGGGTGTAGA
TTAAGGGAGGTAATGGACGTAGTTTGGGCGTGGTGGGTGGTCTACAGTGGGGATGGGGTGGTCTA
CAGTGGGGCTAGCGTGGTTGTGGGGTGGTACTGGAGTTGGGGAAT
Right flanking sequence: Indices 52773 -- 53272
TTCTACGTTGTGGCATATCACGTGACTCCATTTATTCATCTCCTGCATGTAACTGGCTGCAAAAC
TACTCTGGCAACAACGGGTTCTCCTCGTTGTCGATTTCCTCCGAGCAAAGGCCCAAAAAGTCAAG
GGCCACCACCAAAAAGATCCCCACCGAGAGCAGCACGTGCGGTAAGCTCTCCTTAAACAGAAACA
ACGTGTTGGCAATGGTGATCAACGAGTTGTAGATGGGCACGTCACACATTCTCATGCGGATAACC
CCACTAACAATGGTACCGGCGATCCACAACAGCCGGAGCAAGATCTGAGCCGGGGTCAACGAGGG
CCAGTCGCGGACGAGACGCCAGAGGAGCTCGGCCAAAAGGATCCATCCGGGGGTGTGGGTGATTG
CTTGTTTACCGAGTTTGGCGACAGTAAAAGACATTTGGGGTCGGGTGGTGGTCGCGTGGTATTCT
GGAGGCTATATACCTGTGTGGGTCGTCACGGAGCCAGTGACTCCG
Found at i:53356 original size:9 final size:9
Alignment explanation
Indices: 53342--53403 Score: 51
Period size: 8 Copynumber: 7.3 Consensus size: 9
53332 GGGATTGAGG
53342 AGTGGTTGA
1 AGTGGTTGA
*
53351 AGTGG-TGG
1 AGTGGTTGA
*
53359 AGGGGTTGA
1 AGTGGTTGA
*
53368 AGTGG-TGG
1 AGTGGTTGA
*
53376 AGGGGTTGA
1 AGTGGTTGA
*
53385 AGTGG-TGG
1 AGTGGTTGA
53393 AG-GGTTGA
1 AGTGGTTGA
53401 AGT
1 AGT
53404 AGTGGTGGTG
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
7 2 0.05
8 20 0.51
9 17 0.44
ACGTcount: A:0.19, C:0.00, G:0.55, T:0.26
Consensus pattern (9 bp):
AGTGGTTGA
Left flanking sequence: Indices 52842 -- 53341
CTGGCAACAACGGGTTCTCCTCGTTGTCGATTTCCTCCGAGCAAAGGCCCAAAAAGTCAAGGGCC
ACCACCAAAAAGATCCCCACCGAGAGCAGCACGTGCGGTAAGCTCTCCTTAAACAGAAACAACGT
GTTGGCAATGGTGATCAACGAGTTGTAGATGGGCACGTCACACATTCTCATGCGGATAACCCCAC
TAACAATGGTACCGGCGATCCACAACAGCCGGAGCAAGATCTGAGCCGGGGTCAACGAGGGCCAG
TCGCGGACGAGACGCCAGAGGAGCTCGGCCAAAAGGATCCATCCGGGGGTGTGGGTGATTGCTTG
TTTACCGAGTTTGGCGACAGTAAAAGACATTTGGGGTCGGGTGGTGGTCGCGTGGTATTCTGGAG
GCTATATACCTGTGTGGGTCGTCACGGAGCCAGTGACTCCGTTGTCATGGCCACGCGTTTCAGGT
GCAAGGGGCGATTATAATTGAGAAGGGTGGAGGGGGGGATTGAGG
Right flanking sequence: Indices 53404 -- 53903
AGTGGTGGTGACCTATGGGATGGTGTAGTTAGTGGCTGACTTTTGGTTGATTGGGTCACTTTGGG
CCACTATTTACGAATAGTCTTTGAAGCTCATAACCTCGTAACCTCAGTCGAGATCGATCGAAATA
CACTTGGAAATGGGCTGATTGGCGTGTGGGTGTTTCGCTAGTCATCAAAGTGTTGTGATGGTGTA
CCATGCCTCCGAATGTGTTGGTTTCATTGTGGCATCCTGTTTAGTTCTGGACACTAATAGGATAT
ATTTCACGTCCTACCTTATCATCCCACCTTATGTGCTACACAAGTTGCAATGCTCAAACAACTGT
AGAACAAACGATTGAGAAAGAGTTGGTGTGGACACTCTATTTCCTCGACTGATTCGCTTCTCAAC
CAATTGATCAAGTGGTTTCCCCACAGCACCTCTCCACACACGCTCCACACAGCTCCACACGCGTC
ACACGCGTCACACATGCCATACTCTACATATTCCACACACTCTAC
Found at i:53365 original size:17 final size:17
Alignment explanation
Indices: 53340--53408 Score: 113
Period size: 17 Copynumber: 4.1 Consensus size: 17
53330 GGGGGATTGA
*
53340 GGAGTGGTTGAAGTGGT
1 GGAGGGGTTGAAGTGGT
53357 GGAGGGGTTGAAGTGGT
1 GGAGGGGTTGAAGTGGT
53374 GGAGGGGTTGAAGTGGT
1 GGAGGGGTTGAAGTGGT
*
53391 GGA-GGGTTGAAGTAGT
1 GGAGGGGTTGAAGTGGT
53407 GG
1 GG
53409 TGGTGACCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
16 14 0.28
17 36 0.72
ACGTcount: A:0.19, C:0.00, G:0.57, T:0.25
Consensus pattern (17 bp):
GGAGGGGTTGAAGTGGT
Left flanking sequence: Indices 52840 -- 53339
CTCTGGCAACAACGGGTTCTCCTCGTTGTCGATTTCCTCCGAGCAAAGGCCCAAAAAGTCAAGGG
CCACCACCAAAAAGATCCCCACCGAGAGCAGCACGTGCGGTAAGCTCTCCTTAAACAGAAACAAC
GTGTTGGCAATGGTGATCAACGAGTTGTAGATGGGCACGTCACACATTCTCATGCGGATAACCCC
ACTAACAATGGTACCGGCGATCCACAACAGCCGGAGCAAGATCTGAGCCGGGGTCAACGAGGGCC
AGTCGCGGACGAGACGCCAGAGGAGCTCGGCCAAAAGGATCCATCCGGGGGTGTGGGTGATTGCT
TGTTTACCGAGTTTGGCGACAGTAAAAGACATTTGGGGTCGGGTGGTGGTCGCGTGGTATTCTGG
AGGCTATATACCTGTGTGGGTCGTCACGGAGCCAGTGACTCCGTTGTCATGGCCACGCGTTTCAG
GTGCAAGGGGCGATTATAATTGAGAAGGGTGGAGGGGGGGATTGA
Right flanking sequence: Indices 53409 -- 53908
TGGTGACCTATGGGATGGTGTAGTTAGTGGCTGACTTTTGGTTGATTGGGTCACTTTGGGCCACT
ATTTACGAATAGTCTTTGAAGCTCATAACCTCGTAACCTCAGTCGAGATCGATCGAAATACACTT
GGAAATGGGCTGATTGGCGTGTGGGTGTTTCGCTAGTCATCAAAGTGTTGTGATGGTGTACCATG
CCTCCGAATGTGTTGGTTTCATTGTGGCATCCTGTTTAGTTCTGGACACTAATAGGATATATTTC
ACGTCCTACCTTATCATCCCACCTTATGTGCTACACAAGTTGCAATGCTCAAACAACTGTAGAAC
AAACGATTGAGAAAGAGTTGGTGTGGACACTCTATTTCCTCGACTGATTCGCTTCTCAACCAATT
GATCAAGTGGTTTCCCCACAGCACCTCTCCACACACGCTCCACACAGCTCCACACGCGTCACACG
CGTCACACATGCCATACTCTACATATTCCACACACTCTACAAGCC
Found at i:53930 original size:11 final size:11
Alignment explanation
Indices: 53914--53950 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
53904 AAGCCCTACA
53914 CACACTCTCCT
1 CACACTCTCCT
53925 CACACTCTCCT
1 CACACTCTCCT
53936 CACACTCTCCT
1 CACACTCTCCT
53947 CACA
1 CACA
53951 TACACACCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.22, C:0.54, G:0.00, T:0.24
Consensus pattern (11 bp):
CACACTCTCCT
Left flanking sequence: Indices 53414 -- 53913
ACCTATGGGATGGTGTAGTTAGTGGCTGACTTTTGGTTGATTGGGTCACTTTGGGCCACTATTTA
CGAATAGTCTTTGAAGCTCATAACCTCGTAACCTCAGTCGAGATCGATCGAAATACACTTGGAAA
TGGGCTGATTGGCGTGTGGGTGTTTCGCTAGTCATCAAAGTGTTGTGATGGTGTACCATGCCTCC
GAATGTGTTGGTTTCATTGTGGCATCCTGTTTAGTTCTGGACACTAATAGGATATATTTCACGTC
CTACCTTATCATCCCACCTTATGTGCTACACAAGTTGCAATGCTCAAACAACTGTAGAACAAACG
ATTGAGAAAGAGTTGGTGTGGACACTCTATTTCCTCGACTGATTCGCTTCTCAACCAATTGATCA
AGTGGTTTCCCCACAGCACCTCTCCACACACGCTCCACACAGCTCCACACGCGTCACACGCGTCA
CACATGCCATACTCTACATATTCCACACACTCTACAAGCCCTACA
Right flanking sequence: Indices 53951 -- 54450
TACACACCCTCCGCACACATCCGTACTCTCACCCTCCACACTCCCCATCCTGACACTCTTACACT
TTTAACCCGTCTCCCGTCTAACCCATTCCTTCCCCTACACTTTCGTCTACCCTCCTTCCCCCTAC
ACTTTCGTCTACCCTCCTTCTCCTACGCTTCGTCCACCCCTCCTTGTCTCATTTCTTTCATTTCT
CATACATTCGTAAGCTTGATCTTATCCAACTTGGTCTTTTTGGTGCACCCGGGCACCAGCCGGTG
GCGCCGCTTCGGCAGCACCGCCTCCACCCACGGCGCGGTGTCGGGGGTCAGCGCCCCTAGCGCGC
ACACCTCGTAGCTCTCCACCGCCGGCGGGGAGGTGCCGTCGCCAAACACCCGCTCCATGTCGCGG
TGGGTGCCGAGCACACACGCCAGCGGGGCTGCCAGCGGGCACGACACCCGGCTCACCATCACCGC
CTGGGTCAGCAGCGGGCGGAGCTTGAACACGGCGAGCGAGTGGTC
Found at i:54082 original size:27 final size:26
Alignment explanation
Indices: 54042--54125 Score: 116
Period size: 27 Copynumber: 3.2 Consensus size: 26
54032 TCTAACCCAT
54042 TCCTTCCCCTACACTTTCGTCTACCC
1 TCCTTCCCCTACACTTTCGTCTACCC
54068 TCCTTCCCCCTACACTTTCGTCTACCC
1 TCCTT-CCCCTACACTTTCGTCTACCC
* * *
54095 TCCTTCTCCTACGC-TTCGTCCACCCC
1 TCCTTCCCCTACACTTTCGTCTA-CCC
54121 TCCTT
1 TCCTT
54126 GTCTCATTTC
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
25 7 0.13
26 20 0.38
27 26 0.49
ACGTcount: A:0.10, C:0.51, G:0.05, T:0.35
Consensus pattern (26 bp):
TCCTTCCCCTACACTTTCGTCTACCC
Left flanking sequence: Indices 53542 -- 54041
AATGGGCTGATTGGCGTGTGGGTGTTTCGCTAGTCATCAAAGTGTTGTGATGGTGTACCATGCCT
CCGAATGTGTTGGTTTCATTGTGGCATCCTGTTTAGTTCTGGACACTAATAGGATATATTTCACG
TCCTACCTTATCATCCCACCTTATGTGCTACACAAGTTGCAATGCTCAAACAACTGTAGAACAAA
CGATTGAGAAAGAGTTGGTGTGGACACTCTATTTCCTCGACTGATTCGCTTCTCAACCAATTGAT
CAAGTGGTTTCCCCACAGCACCTCTCCACACACGCTCCACACAGCTCCACACGCGTCACACGCGT
CACACATGCCATACTCTACATATTCCACACACTCTACAAGCCCTACACACACTCTCCTCACACTC
TCCTCACACTCTCCTCACATACACACCCTCCGCACACATCCGTACTCTCACCCTCCACACTCCCC
ATCCTGACACTCTTACACTTTTAACCCGTCTCCCGTCTAACCCAT
Right flanking sequence: Indices 54126 -- 54625
GTCTCATTTCTTTCATTTCTCATACATTCGTAAGCTTGATCTTATCCAACTTGGTCTTTTTGGTG
CACCCGGGCACCAGCCGGTGGCGCCGCTTCGGCAGCACCGCCTCCACCCACGGCGCGGTGTCGGG
GGTCAGCGCCCCTAGCGCGCACACCTCGTAGCTCTCCACCGCCGGCGGGGAGGTGCCGTCGCCAA
ACACCCGCTCCATGTCGCGGTGGGTGCCGAGCACACACGCCAGCGGGGCTGCCAGCGGGCACGAC
ACCCGGCTCACCATCACCGCCTGGGTCAGCAGCGGGCGGAGCTTGAACACGGCGAGCGAGTGGTC
CATGGCGGTGACCACGGCGTACCAGCAGCTGGCGGCGGGGCTGGTGCTCTCCAGCGCCACCACCA
GCCACAGGTGCACGGGGCCCACCCCCGCAAACGAGAACCGCTGCACCACCGCCATCCGGGCCACG
TCAATCACCCCCATCTGGGCAATGCCGTCGCAGAAGAACACGTGG
Found at i:55785 original size:11 final size:11
Alignment explanation
Indices: 55771--55804 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
55761 GAGAGTGCGA
55771 GAGAAGTGTAG
1 GAGAAGTGTAG
55782 GAGAAGTGT-G
1 GAGAAGTGTAG
55792 AGAGAAGTGTAG
1 -GAGAAGTGTAG
55804 G
1 G
55805 GGGAGGATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 1 0.05
11 19 0.90
12 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.47, T:0.18
Consensus pattern (11 bp):
GAGAAGTGTAG
Left flanking sequence: Indices 55271 -- 55770
AACCCCGCGGCCACCACGGGGTCGTCGGGCGTCACCACCAGGTTCTTCCACTCCTTAAACAACAG
GTATTGCTCGGCCAGGCGCTCGTACAACTGGATGAGCCCCAGGGCGCGCACCACCGCGAGCCAGT
GCTTGTGGTTGGCGGTGCGCCCCGTGAGCACCTGGGTGACGTGCGGGTGCCCCGCCGCCACCGGG
GGGCCCCACGCGCCGCGCGACACCTCCACCACGCACATGCCGCCGCCGCGGGCCGGGGTCAGCAC
TAGGACGTCCATGTCGGCAGTCAGAAAACAGGGATGCCGAAGGAAGACCGCAGGAGGAGGGGTAA
ACGAACAGAGTGTGGAGCTTGGTGGTTGTTAGACCTATGGGGACGTGGTGCGGTGCGCCCGATCA
AGTCGCGGGGAGCGCGGGCGGTGTGCAGGAGAGCAAGGAGACGGCGGACGTGGAGAGGAGAGAGG
AGGGTAGGTGGAGATGAGAGGAAGGGCGGGGTGTAGAGAGTGCGA
Right flanking sequence: Indices 55805 -- 56304
GGGAGGATGAGAGGAGTATGGGAGGAGTTTGAGAGGCGTATGAGAGGATGAGGATAGGAGAGATC
AGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTGGTGTGTGTAGAGTGTTG
GGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACCGTTTCAGCACCGGGT
AGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAGGAGAATGAAAGAATAGAGAATGAAAAAGA
ATAGAAATGAGAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATGGAGAAGAGAATGAAAAT
GAGAATAGGTAGGATGAGCCCGGTTGGGTGGCTGCGTGGGTACGACGTGTCGGCAGCGTCGGGCC
GTCACCCGGCACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGCGGTGCCGAGTCGGGC
GTTGTTACGTGGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGA
Found at i:55817 original size:22 final size:22
Alignment explanation
Indices: 55756--55804 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
55746 GAAGGGCGGG
*
55756 GTGTA-GAG-AGTGCGAGAGAA
1 GTGTAGGAGAAGTGTGAGAGAA
55776 GTGTAGGAGAAGTGTGAGAGAA
1 GTGTAGGAGAAGTGTGAGAGAA
55798 GTGTAGG
1 GTGTAGG
55805 GGGAGGATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 5 0.19
21 3 0.12
22 18 0.69
ACGTcount: A:0.33, C:0.02, G:0.47, T:0.18
Consensus pattern (22 bp):
GTGTAGGAGAAGTGTGAGAGAA
Left flanking sequence: Indices 55256 -- 55755
TAGCGGTGGCCCGCAAACCCCGCGGCCACCACGGGGTCGTCGGGCGTCACCACCAGGTTCTTCCA
CTCCTTAAACAACAGGTATTGCTCGGCCAGGCGCTCGTACAACTGGATGAGCCCCAGGGCGCGCA
CCACCGCGAGCCAGTGCTTGTGGTTGGCGGTGCGCCCCGTGAGCACCTGGGTGACGTGCGGGTGC
CCCGCCGCCACCGGGGGGCCCCACGCGCCGCGCGACACCTCCACCACGCACATGCCGCCGCCGCG
GGCCGGGGTCAGCACTAGGACGTCCATGTCGGCAGTCAGAAAACAGGGATGCCGAAGGAAGACCG
CAGGAGGAGGGGTAAACGAACAGAGTGTGGAGCTTGGTGGTTGTTAGACCTATGGGGACGTGGTG
CGGTGCGCCCGATCAAGTCGCGGGGAGCGCGGGCGGTGTGCAGGAGAGCAAGGAGACGGCGGACG
TGGAGAGGAGAGAGGAGGGTAGGTGGAGATGAGAGGAAGGGCGGG
Right flanking sequence: Indices 55805 -- 56304
GGGAGGATGAGAGGAGTATGGGAGGAGTTTGAGAGGCGTATGAGAGGATGAGGATAGGAGAGATC
AGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTGGTGTGTGTAGAGTGTTG
GGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACCGTTTCAGCACCGGGT
AGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAGGAGAATGAAAGAATAGAGAATGAAAAAGA
ATAGAAATGAGAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATGGAGAAGAGAATGAAAAT
GAGAATAGGTAGGATGAGCCCGGTTGGGTGGCTGCGTGGGTACGACGTGTCGGCAGCGTCGGGCC
GTCACCCGGCACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGCGGTGCCGAGTCGGGC
GTTGTTACGTGGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGA
Found at i:55820 original size:11 final size:11
Alignment explanation
Indices: 55806--55852 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
55796 AAGTGTAGGG
*
55806 GGAGGATGAGA
1 GGAGTATGAGA
*
55817 GGAGTATGGGA
1 GGAGTATGAGA
*
55828 GGAGTTTGAGA
1 GGAGTATGAGA
*
55839 GGCGTATGAGA
1 GGAGTATGAGA
55850 GGA
1 GGA
55853 TGAGGATAGG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.30, C:0.02, G:0.51, T:0.17
Consensus pattern (11 bp):
GGAGTATGAGA
Left flanking sequence: Indices 55306 -- 55805
CACCAGGTTCTTCCACTCCTTAAACAACAGGTATTGCTCGGCCAGGCGCTCGTACAACTGGATGA
GCCCCAGGGCGCGCACCACCGCGAGCCAGTGCTTGTGGTTGGCGGTGCGCCCCGTGAGCACCTGG
GTGACGTGCGGGTGCCCCGCCGCCACCGGGGGGCCCCACGCGCCGCGCGACACCTCCACCACGCA
CATGCCGCCGCCGCGGGCCGGGGTCAGCACTAGGACGTCCATGTCGGCAGTCAGAAAACAGGGAT
GCCGAAGGAAGACCGCAGGAGGAGGGGTAAACGAACAGAGTGTGGAGCTTGGTGGTTGTTAGACC
TATGGGGACGTGGTGCGGTGCGCCCGATCAAGTCGCGGGGAGCGCGGGCGGTGTGCAGGAGAGCA
AGGAGACGGCGGACGTGGAGAGGAGAGAGGAGGGTAGGTGGAGATGAGAGGAAGGGCGGGGTGTA
GAGAGTGCGAGAGAAGTGTAGGAGAAGTGTGAGAGAAGTGTAGGG
Right flanking sequence: Indices 55853 -- 56352
TGAGGATAGGAGAGATCAGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTG
GTGTGTGTAGAGTGTTGGGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTA
CCGTTTCAGCACCGGGTAGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAGGAGAATGAAAGA
ATAGAGAATGAAAAAGAATAGAAATGAGAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATG
GAGAAGAGAATGAAAATGAGAATAGGTAGGATGAGCCCGGTTGGGTGGCTGCGTGGGTACGACGT
GTCGGCAGCGTCGGGCCGTCACCCGGCACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGG
GCGGTGCCGAGTCGGGCGTTGTTACGTGGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGACAG
CCACTGGCAACGCCCGGCGAGGGTGGCTCGTGGCCCCACGTCCCT
Found at i:56056 original size:15 final size:15
Alignment explanation
Indices: 56036--56074 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
56026 CGGAAGGAAG
56036 GAGAATGAAAGAATA
1 GAGAATGAAAGAATA
56051 GAGAATGAAAAAGAATA
1 GAGAATG--AAAGAATA
56068 GA-AATGA
1 GAGAATGA
56075 GAATGGAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 1 0.05
15 7 0.32
16 4 0.18
17 10 0.45
ACGTcount: A:0.62, C:0.00, G:0.26, T:0.13
Consensus pattern (15 bp):
GAGAATGAAAGAATA
Left flanking sequence: Indices 55536 -- 56035
CGTCCATGTCGGCAGTCAGAAAACAGGGATGCCGAAGGAAGACCGCAGGAGGAGGGGTAAACGAA
CAGAGTGTGGAGCTTGGTGGTTGTTAGACCTATGGGGACGTGGTGCGGTGCGCCCGATCAAGTCG
CGGGGAGCGCGGGCGGTGTGCAGGAGAGCAAGGAGACGGCGGACGTGGAGAGGAGAGAGGAGGGT
AGGTGGAGATGAGAGGAAGGGCGGGGTGTAGAGAGTGCGAGAGAAGTGTAGGAGAAGTGTGAGAG
AAGTGTAGGGGGAGGATGAGAGGAGTATGGGAGGAGTTTGAGAGGCGTATGAGAGGATGAGGATA
GGAGAGATCAGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTGGTGTGTGT
AGAGTGTTGGGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACCGTTTCA
GCACCGGGTAGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAG
Right flanking sequence: Indices 56075 -- 56574
GAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATGGAGAAGAGAATGAAAATGAGAATAGGT
AGGATGAGCCCGGTTGGGTGGCTGCGTGGGTACGACGTGTCGGCAGCGTCGGGCCGTCACCCGGC
ACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGCGGTGCCGAGTCGGGCGTTGTTACGT
GGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGACAGCCACTGGCAACGCCCGGCGAGGGTGGC
TCGTGGCCCCACGTCCCTGACGACCGTTGGGCAGGTGCGTCTCCAGTGCCAGACAGCCTGAGCGA
ATGGGGCGATGTAGGAGGCGGAGCCGGAAGGGGGCTCAAGGGAGAGCTGGGGTGGCTCAAGGGAG
AGACGTTTGCCTACGTTTGCCCCCTACAGTGTTTTTCCAGCCTTGGCCAGGCTTGCTCTGGTCCG
ATAATGCTAGTCCGCGAACAATAGAAGGGATGGAGGTTCAGCCGT
Found at i:56065 original size:17 final size:16
Alignment explanation
Indices: 56043--56074 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
56033 AAGGAGAATG
56043 AAAGAATAGAGAATGAA
1 AAAGAATAGA-AATGAA
56060 AAAGAATAGAAATGA
1 AAAGAATAGAAATGA
56075 GAATGGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.66, C:0.00, G:0.22, T:0.12
Consensus pattern (16 bp):
AAAGAATAGAAATGAA
Left flanking sequence: Indices 55543 -- 56042
GTCGGCAGTCAGAAAACAGGGATGCCGAAGGAAGACCGCAGGAGGAGGGGTAAACGAACAGAGTG
TGGAGCTTGGTGGTTGTTAGACCTATGGGGACGTGGTGCGGTGCGCCCGATCAAGTCGCGGGGAG
CGCGGGCGGTGTGCAGGAGAGCAAGGAGACGGCGGACGTGGAGAGGAGAGAGGAGGGTAGGTGGA
GATGAGAGGAAGGGCGGGGTGTAGAGAGTGCGAGAGAAGTGTAGGAGAAGTGTGAGAGAAGTGTA
GGGGGAGGATGAGAGGAGTATGGGAGGAGTTTGAGAGGCGTATGAGAGGATGAGGATAGGAGAGA
TCAGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTGGTGTGTGTAGAGTGT
TGGGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACCGTTTCAGCACCGG
GTAGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAGGAGAATG
Right flanking sequence: Indices 56075 -- 56574
GAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATGGAGAAGAGAATGAAAATGAGAATAGGT
AGGATGAGCCCGGTTGGGTGGCTGCGTGGGTACGACGTGTCGGCAGCGTCGGGCCGTCACCCGGC
ACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGCGGTGCCGAGTCGGGCGTTGTTACGT
GGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGACAGCCACTGGCAACGCCCGGCGAGGGTGGC
TCGTGGCCCCACGTCCCTGACGACCGTTGGGCAGGTGCGTCTCCAGTGCCAGACAGCCTGAGCGA
ATGGGGCGATGTAGGAGGCGGAGCCGGAAGGGGGCTCAAGGGAGAGCTGGGGTGGCTCAAGGGAG
AGACGTTTGCCTACGTTTGCCCCCTACAGTGTTTTTCCAGCCTTGGCCAGGCTTGCTCTGGTCCG
ATAATGCTAGTCCGCGAACAATAGAAGGGATGGAGGTTCAGCCGT
Found at i:56110 original size:13 final size:13
Alignment explanation
Indices: 56045--56111 Score: 61
Period size: 13 Copynumber: 5.4 Consensus size: 13
56035 GGAGAATGAA
56045 AGAATAGAGAAT-G
1 AGAATA-AGAATGG
*
56058 A-AA-AAGAATAG
1 AGAATAAGAATGG
*
56069 A-AATGAGAATGG
1 AGAATAAGAATGG
* *
56081 AGAATAAGAACGA
1 AGAATAAGAATGG
56094 AGAATAAGAATGG
1 AGAATAAGAATGG
56107 AGAAT
1 AGAAT
56112 GGAGAAGAGA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
10 5 0.11
11 5 0.11
12 9 0.20
13 25 0.57
ACGTcount: A:0.58, C:0.01, G:0.27, T:0.13
Consensus pattern (13 bp):
AGAATAAGAATGG
Left flanking sequence: Indices 55545 -- 56044
CGGCAGTCAGAAAACAGGGATGCCGAAGGAAGACCGCAGGAGGAGGGGTAAACGAACAGAGTGTG
GAGCTTGGTGGTTGTTAGACCTATGGGGACGTGGTGCGGTGCGCCCGATCAAGTCGCGGGGAGCG
CGGGCGGTGTGCAGGAGAGCAAGGAGACGGCGGACGTGGAGAGGAGAGAGGAGGGTAGGTGGAGA
TGAGAGGAAGGGCGGGGTGTAGAGAGTGCGAGAGAAGTGTAGGAGAAGTGTGAGAGAAGTGTAGG
GGGAGGATGAGAGGAGTATGGGAGGAGTTTGAGAGGCGTATGAGAGGATGAGGATAGGAGAGATC
AGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTGGTGTGTGTAGAGTGTTG
GGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACCGTTTCAGCACCGGGT
AGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAGGAGAATGAA
Right flanking sequence: Indices 56112 -- 56611
GGAGAAGAGAATGAAAATGAGAATAGGTAGGATGAGCCCGGTTGGGTGGCTGCGTGGGTACGACG
TGTCGGCAGCGTCGGGCCGTCACCCGGCACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAG
GGCGGTGCCGAGTCGGGCGTTGTTACGTGGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGACA
GCCACTGGCAACGCCCGGCGAGGGTGGCTCGTGGCCCCACGTCCCTGACGACCGTTGGGCAGGTG
CGTCTCCAGTGCCAGACAGCCTGAGCGAATGGGGCGATGTAGGAGGCGGAGCCGGAAGGGGGCTC
AAGGGAGAGCTGGGGTGGCTCAAGGGAGAGACGTTTGCCTACGTTTGCCCCCTACAGTGTTTTTC
CAGCCTTGGCCAGGCTTGCTCTGGTCCGATAATGCTAGTCCGCGAACAATAGAAGGGATGGAGGT
TCAGCCGTTCAGGGTTCAGGTGTGGCTGGAAATGGTGTAATTTTA
Found at i:56446 original size:23 final size:21
Alignment explanation
Indices: 56420--56466 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
56410 GTAGGAGGCG
56420 GAGCCGGAAGGGGGCTCAAGGGA
1 GAGCCGG--GGGGGCTCAAGGGA
* *
56443 GAGCTGGGGTGGCTCAAGGGA
1 GAGCCGGGGGGGCTCAAGGGA
56464 GAG
1 GAG
56467 ACGTTTGCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 16 0.73
23 6 0.27
ACGTcount: A:0.23, C:0.15, G:0.53, T:0.09
Consensus pattern (21 bp):
GAGCCGGGGGGGCTCAAGGGA
Left flanking sequence: Indices 55920 -- 56419
GTGTGTAGAGTGTTGGGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACC
GTTTCAGCACCGGGTAGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAGGAGAATGAAAGAAT
AGAGAATGAAAAAGAATAGAAATGAGAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATGGA
GAAGAGAATGAAAATGAGAATAGGTAGGATGAGCCCGGTTGGGTGGCTGCGTGGGTACGACGTGT
CGGCAGCGTCGGGCCGTCACCCGGCACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGC
GGTGCCGAGTCGGGCGTTGTTACGTGGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGACAGCC
ACTGGCAACGCCCGGCGAGGGTGGCTCGTGGCCCCACGTCCCTGACGACCGTTGGGCAGGTGCGT
CTCCAGTGCCAGACAGCCTGAGCGAATGGGGCGATGTAGGAGGCG
Right flanking sequence: Indices 56467 -- 56966
ACGTTTGCCTACGTTTGCCCCCTACAGTGTTTTTCCAGCCTTGGCCAGGCTTGCTCTGGTCCGAT
AATGCTAGTCCGCGAACAATAGAAGGGATGGAGGTTCAGCCGTTCAGGGTTCAGGTGTGGCTGGA
AATGGTGTAATTTTAGGGAAGATGTGTGGTGGGGTAGGTGAACTGGTAGGGTTTCAAGGTAGATG
GCTGTGAAATGGGGACGTAGCTTGTTAAACTACTAGTGCCCGCTTGTTTTATGCAATAATCCTCT
TTATTATCGTCTTTATTATCGTCTTATCATCTCTATTGTACTCTGAAACATAGATCTTCTTGTTA
GCTAACACAAACCCCTCATTCGCCATTAATTCGTTGTTACTTGCCATTAATCGCTATTATCTTGC
CTTAAATCGTTATAGCTCTTGCCATTAATCGTTGTTACTTGCCATTAATCATCGTTACTCTATCT
CTATGCCGCAAAGCCAGCTTTGCATTGGCACTAGGCCTTTTAACC
Found at i:56741 original size:12 final size:12
Alignment explanation
Indices: 56724--56751 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
56714 GCAATAATCC
56724 TCTTTATTATCG
1 TCTTTATTATCG
56736 TCTTTATTATCG
1 TCTTTATTATCG
56748 TCTT
1 TCTT
56752 ATCATCTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.18, G:0.07, T:0.61
Consensus pattern (12 bp):
TCTTTATTATCG
Left flanking sequence: Indices 56224 -- 56723
CCCAGCGTCGTCGTGTAGGGCGGTGCCGAGTCGGGCGTTGTTACGTGGCTACGTGGCGGAGAGGG
TTCCCAACCGTCGGGACAGCCACTGGCAACGCCCGGCGAGGGTGGCTCGTGGCCCCACGTCCCTG
ACGACCGTTGGGCAGGTGCGTCTCCAGTGCCAGACAGCCTGAGCGAATGGGGCGATGTAGGAGGC
GGAGCCGGAAGGGGGCTCAAGGGAGAGCTGGGGTGGCTCAAGGGAGAGACGTTTGCCTACGTTTG
CCCCCTACAGTGTTTTTCCAGCCTTGGCCAGGCTTGCTCTGGTCCGATAATGCTAGTCCGCGAAC
AATAGAAGGGATGGAGGTTCAGCCGTTCAGGGTTCAGGTGTGGCTGGAAATGGTGTAATTTTAGG
GAAGATGTGTGGTGGGGTAGGTGAACTGGTAGGGTTTCAAGGTAGATGGCTGTGAAATGGGGACG
TAGCTTGTTAAACTACTAGTGCCCGCTTGTTTTATGCAATAATCC
Right flanking sequence: Indices 56752 -- 57251
ATCATCTCTATTGTACTCTGAAACATAGATCTTCTTGTTAGCTAACACAAACCCCTCATTCGCCA
TTAATTCGTTGTTACTTGCCATTAATCGCTATTATCTTGCCTTAAATCGTTATAGCTCTTGCCAT
TAATCGTTGTTACTTGCCATTAATCATCGTTACTCTATCTCTATGCCGCAAAGCCAGCTTTGCAT
TGGCACTAGGCCTTTTAACCCCCGCGACTGTCTCTATCCTGGCTCAAGCTGCCACCTCCGAGACT
GTCTCTATCCTGGCTCAAACTGCCTCCCCCCTGACTGTCTCGGCCCAAACTGCCTCCGTCTCGAG
CCAACACCCCCATCGGAATGTCCTCGCCGGGGAGCGAGCCGTGTCTCGTCCCCACCTCGGCAACC
CCCACCGTGGCCTGCTCCTTGTAGGGCGGCACGTACACGGGCGGAGGCTCTTCGGGGTGCTTGGT
GTACACGGGCAACGCCTCGTCCACCTCTTGGTGGGGTCTGTGCAC
Found at i:56899 original size:20 final size:21
Alignment explanation
Indices: 56813--56906 Score: 97
Period size: 20 Copynumber: 4.5 Consensus size: 21
56803 CCCCTCATTC
56813 GCCATTAATTCGTTGTTA-CTT
1 GCCATTAA-TCGTTGTTATCTT
* *
56834 GCCATTAATCGCTATTATCTT
1 GCCATTAATCGTTGTTATCTT
*
56855 GCC-TTAAATCGTT-ATAGCTCTT
1 GCCATT-AATCGTTGTTA--TCTT
56877 GCCATTAATCGTTGTTA-CTT
1 GCCATTAATCGTTGTTATCTT
56897 GCCATTAATC
1 GCCATTAATC
56907 ATCGTTACTC
Statistics
Matches: 62, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
20 24 0.39
21 20 0.32
22 14 0.23
23 4 0.06
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (21 bp):
GCCATTAATCGTTGTTATCTT
Left flanking sequence: Indices 56313 -- 56812
GGCAACGCCCGGCGAGGGTGGCTCGTGGCCCCACGTCCCTGACGACCGTTGGGCAGGTGCGTCTC
CAGTGCCAGACAGCCTGAGCGAATGGGGCGATGTAGGAGGCGGAGCCGGAAGGGGGCTCAAGGGA
GAGCTGGGGTGGCTCAAGGGAGAGACGTTTGCCTACGTTTGCCCCCTACAGTGTTTTTCCAGCCT
TGGCCAGGCTTGCTCTGGTCCGATAATGCTAGTCCGCGAACAATAGAAGGGATGGAGGTTCAGCC
GTTCAGGGTTCAGGTGTGGCTGGAAATGGTGTAATTTTAGGGAAGATGTGTGGTGGGGTAGGTGA
ACTGGTAGGGTTTCAAGGTAGATGGCTGTGAAATGGGGACGTAGCTTGTTAAACTACTAGTGCCC
GCTTGTTTTATGCAATAATCCTCTTTATTATCGTCTTTATTATCGTCTTATCATCTCTATTGTAC
TCTGAAACATAGATCTTCTTGTTAGCTAACACAAACCCCTCATTC
Right flanking sequence: Indices 56907 -- 57406
ATCGTTACTCTATCTCTATGCCGCAAAGCCAGCTTTGCATTGGCACTAGGCCTTTTAACCCCCGC
GACTGTCTCTATCCTGGCTCAAGCTGCCACCTCCGAGACTGTCTCTATCCTGGCTCAAACTGCCT
CCCCCCTGACTGTCTCGGCCCAAACTGCCTCCGTCTCGAGCCAACACCCCCATCGGAATGTCCTC
GCCGGGGAGCGAGCCGTGTCTCGTCCCCACCTCGGCAACCCCCACCGTGGCCTGCTCCTTGTAGG
GCGGCACGTACACGGGCGGAGGCTCTTCGGGGTGCTTGGTGTACACGGGCAACGCCTCGTCCACC
TCTTGGTGGGGTCTGTGCACCGGAGGCGGGTCTAGCGGCGAGAAACTGATGGGAAACCGGGTTCG
GGGGTTCGGTAGGGCGTCTACCTGGGCCGTGAGCCGCCTCTGCCGTCTCAGGCGAAGAACGATCA
ACATGAAAATAACCACAAGCAACACGGGGATCACCACGAACCCCG
Found at i:56913 original size:20 final size:20
Alignment explanation
Indices: 56874--56915 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
56864 CGTTATAGCT
* *
56874 CTTGCCATTAATCGTTGTTA
1 CTTGCCATTAATCATCGTTA
56894 CTTGCCATTAATCATCGTTA
1 CTTGCCATTAATCATCGTTA
56914 CT
1 CT
56916 CTATCTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.43
Consensus pattern (20 bp):
CTTGCCATTAATCATCGTTA
Left flanking sequence: Indices 56374 -- 56873
TCTCCAGTGCCAGACAGCCTGAGCGAATGGGGCGATGTAGGAGGCGGAGCCGGAAGGGGGCTCAA
GGGAGAGCTGGGGTGGCTCAAGGGAGAGACGTTTGCCTACGTTTGCCCCCTACAGTGTTTTTCCA
GCCTTGGCCAGGCTTGCTCTGGTCCGATAATGCTAGTCCGCGAACAATAGAAGGGATGGAGGTTC
AGCCGTTCAGGGTTCAGGTGTGGCTGGAAATGGTGTAATTTTAGGGAAGATGTGTGGTGGGGTAG
GTGAACTGGTAGGGTTTCAAGGTAGATGGCTGTGAAATGGGGACGTAGCTTGTTAAACTACTAGT
GCCCGCTTGTTTTATGCAATAATCCTCTTTATTATCGTCTTTATTATCGTCTTATCATCTCTATT
GTACTCTGAAACATAGATCTTCTTGTTAGCTAACACAAACCCCTCATTCGCCATTAATTCGTTGT
TACTTGCCATTAATCGCTATTATCTTGCCTTAAATCGTTATAGCT
Right flanking sequence: Indices 56916 -- 57415
CTATCTCTATGCCGCAAAGCCAGCTTTGCATTGGCACTAGGCCTTTTAACCCCCGCGACTGTCTC
TATCCTGGCTCAAGCTGCCACCTCCGAGACTGTCTCTATCCTGGCTCAAACTGCCTCCCCCCTGA
CTGTCTCGGCCCAAACTGCCTCCGTCTCGAGCCAACACCCCCATCGGAATGTCCTCGCCGGGGAG
CGAGCCGTGTCTCGTCCCCACCTCGGCAACCCCCACCGTGGCCTGCTCCTTGTAGGGCGGCACGT
ACACGGGCGGAGGCTCTTCGGGGTGCTTGGTGTACACGGGCAACGCCTCGTCCACCTCTTGGTGG
GGTCTGTGCACCGGAGGCGGGTCTAGCGGCGAGAAACTGATGGGAAACCGGGTTCGGGGGTTCGG
TAGGGCGTCTACCTGGGCCGTGAGCCGCCTCTGCCGTCTCAGGCGAAGAACGATCAACATGAAAA
TAACCACAAGCAACACGGGGATCACCACGAACCCCGTGTAGGTGT
Found at i:57048 original size:36 final size:36
Alignment explanation
Indices: 56964--57052 Score: 117
Period size: 36 Copynumber: 2.5 Consensus size: 36
56954 AGGCCTTTTA
*
56964 ACCCCCGC-GACTGTCTCTATCCTGGCTCAAGCTGCC
1 ACCCCC-CAGACTGTCTCTATCCTGGCTCAAACTGCC
* *
57000 ACCTCCGAGACTGTCTCTATCCTGGCTCAAACTGCC
1 ACCCCCCAGACTGTCTCTATCCTGGCTCAAACTGCC
* *
57036 TCCCCCCTGACTGTCTC
1 ACCCCCCAGACTGTCTC
57053 GGCCCAAACT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.15, C:0.44, G:0.17, T:0.25
Consensus pattern (36 bp):
ACCCCCCAGACTGTCTCTATCCTGGCTCAAACTGCC
Left flanking sequence: Indices 56464 -- 56963
GAGACGTTTGCCTACGTTTGCCCCCTACAGTGTTTTTCCAGCCTTGGCCAGGCTTGCTCTGGTCC
GATAATGCTAGTCCGCGAACAATAGAAGGGATGGAGGTTCAGCCGTTCAGGGTTCAGGTGTGGCT
GGAAATGGTGTAATTTTAGGGAAGATGTGTGGTGGGGTAGGTGAACTGGTAGGGTTTCAAGGTAG
ATGGCTGTGAAATGGGGACGTAGCTTGTTAAACTACTAGTGCCCGCTTGTTTTATGCAATAATCC
TCTTTATTATCGTCTTTATTATCGTCTTATCATCTCTATTGTACTCTGAAACATAGATCTTCTTG
TTAGCTAACACAAACCCCTCATTCGCCATTAATTCGTTGTTACTTGCCATTAATCGCTATTATCT
TGCCTTAAATCGTTATAGCTCTTGCCATTAATCGTTGTTACTTGCCATTAATCATCGTTACTCTA
TCTCTATGCCGCAAAGCCAGCTTTGCATTGGCACTAGGCCTTTTA
Right flanking sequence: Indices 57053 -- 57552
GGCCCAAACTGCCTCCGTCTCGAGCCAACACCCCCATCGGAATGTCCTCGCCGGGGAGCGAGCCG
TGTCTCGTCCCCACCTCGGCAACCCCCACCGTGGCCTGCTCCTTGTAGGGCGGCACGTACACGGG
CGGAGGCTCTTCGGGGTGCTTGGTGTACACGGGCAACGCCTCGTCCACCTCTTGGTGGGGTCTGT
GCACCGGAGGCGGGTCTAGCGGCGAGAAACTGATGGGAAACCGGGTTCGGGGGTTCGGTAGGGCG
TCTACCTGGGCCGTGAGCCGCCTCTGCCGTCTCAGGCGAAGAACGATCAACATGAAAATAACCAC
AAGCAACACGGGGATCACCACGAACCCCGTGTAGGTGTTGTCCCGTTTCTCGAGACGTCGTGGTA
GAATCATGGTGTATCCAGGGGTTGGAGCCACATGACCCGACCCACTATTGCTTTTGGGGACTCAT
AACCACAACCGCTCTATGGGGAAAATAGTGGGGTAGGATGGTCTG
Found at i:57662 original size:26 final size:26
Alignment explanation
Indices: 57626--57691 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
57616 GTCGCAATGA
*
57626 GTCGCAATGAGTGGGAGCGGTGACAG
1 GTCGCAATGAGTGGGAGCAGTGACAG
57652 GTCGCAATGAGTGGGAGCAGTGACAG
1 GTCGCAATGAGTGGGAGCAGTGACAG
*
57678 TTCGCAATGAGTGG
1 GTCGCAATGAGTGG
57692 TGGTCGGCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.24, C:0.15, G:0.42, T:0.18
Consensus pattern (26 bp):
GTCGCAATGAGTGGGAGCAGTGACAG
Left flanking sequence: Indices 57126 -- 57625
CCCCACCTCGGCAACCCCCACCGTGGCCTGCTCCTTGTAGGGCGGCACGTACACGGGCGGAGGCT
CTTCGGGGTGCTTGGTGTACACGGGCAACGCCTCGTCCACCTCTTGGTGGGGTCTGTGCACCGGA
GGCGGGTCTAGCGGCGAGAAACTGATGGGAAACCGGGTTCGGGGGTTCGGTAGGGCGTCTACCTG
GGCCGTGAGCCGCCTCTGCCGTCTCAGGCGAAGAACGATCAACATGAAAATAACCACAAGCAACA
CGGGGATCACCACGAACCCCGTGTAGGTGTTGTCCCGTTTCTCGAGACGTCGTGGTAGAATCATG
GTGTATCCAGGGGTTGGAGCCACATGACCCGACCCACTATTGCTTTTGGGGACTCATAACCACAA
CCGCTCTATGGGGAAAATAGTGGGGTAGGATGGTCTGCGGGCCTGACGGACTGGACAAGGGGCCG
TGTGCATGAGACTCTCAATATACGAGCGGTGACAGGTCGCAATGA
Right flanking sequence: Indices 57692 -- 58191
TGGTCGGCTATACGGAATTGAAGGTCTTTAAAGGAGTACTGTTTTACACACTGTTGATAGCGTAT
TCATTCAGGTTGATGTCGTCGTTGCCGTCGCCACTCCTTGGTTGCCAAGCACCTGGGTGACTGGA
ACGTGTTCAGGCATTCCTTTTCGGTTATGCACGTAATATCTGGGTTCCCAAACTCCGGTGGAAAT
TCCCTCGTAAACACCAATACGAGGTAATTTAAATAGCCCTGGTTCTCTCGAGACCCGTAAACCAT
GCGTTTTTTGTATCTCCTACCCCTCGTCGCCGCTAATGGCTTCTACAAAGAGAAGGACGGCACCA
CCTACATCACCGCCAACGCCGACAAGTTTCTGAAGCTCGCGCTGTCGTTGGGAGTCACCAGAACC
GAGTTCAGAAACATCTACGCCTACCTCTACGAGTCGTTCCTGGGGCTGATCCCATTGGAGACGTT
TGAGGCTTTCCAGACCAACGCTGTCTTGGCAGCCTCGGTCGAAGG
Found at i:58819 original size:20 final size:20
Alignment explanation
Indices: 58794--58846 Score: 90
Period size: 20 Copynumber: 2.6 Consensus size: 20
58784 CATAAATAGC
58794 CCAGTTTTCACCACC-AGTCA
1 CCAGTTTTCACCACCGA-TCA
58814 CCAGTTTTCACCACCGATCA
1 CCAGTTTTCACCACCGATCA
58834 CCAGTTTTCACCA
1 CCAGTTTTCACCA
58847 TCGACCACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.25, C:0.40, G:0.09, T:0.26
Consensus pattern (20 bp):
CCAGTTTTCACCACCGATCA
Left flanking sequence: Indices 58294 -- 58793
GAACTAGACCCAAGCAATAAGACTACTCAACCATTCTGTTCATTCTGTTTACTATGCCACCATGC
TCGTATTGCCACGGTGATCACCCGTGCATTGATGCTCGTATTGGCATTACTACGACGGGCCGCGA
CGGGCCTCGTGACCTTTGCTCAGCCCCAGGGGCATAGTCCGGAGTGACAATCGCCGTTGAGATTG
TAACTGGAACCCATTCGTTGACAACCACGATAGATTCTGGCAACGGTGGTCACGGTCGGATCGGG
GCTTGCAGATACGGGGTTTAGCCAGGGGTGACCATACGAACCACAGATGAAACGACAGATGGAAG
ATCCACAATTGCTGTAGATTGCTAGACTCGTGGCTAGTCAGCTCTAACTGGACACACGCTTACTC
TCGCTCAGCTTCCTTCTCTACCCTCTTTCTATCTACAATCCCCAGCTTATCTGGTCGTCTTGGCA
GCCAGGGCTAGGCACCGCAGCCAGGGGTAGTGTGTCATAAATAGC
Right flanking sequence: Indices 58847 -- 59346
TCGACCACAAACATGCACTTCTCTCCCTCTCTTCTTGCTTTAGCCGTTGCCGAGATCTACAACGT
CGAGGACGGGACCACCTACATCACCGTGGAGCCCGACAAGTTTGCAGACGACGCGGAGGCCGAGG
GGTTCACCTACAACAACATCGGGCTCATGTACCAGATGCTCTACGACTCGTTCCTGGGGCTGATT
CCCCTCGAAACGTTACTCGAGATCCAGACGAACACGGCGATGATTGCGTCGCTTGACCTGGAGTT
TGAAGACTTCACAAAGACCAAGACCGACAGCGGAGGTGCCCCCACCATGGGCTACGCGTACGGCG
CAGTCATTGCAGGCCTCGGGTTGTTTCTTTTGTAATTGTCTATAAGAATAGATGAATTGACCGAA
TACGAAGGATCAAGCGGTATAAATGGGGTCGAATTCAAGCGAATACGACCATTTACAGCTTCAAT
GGGTTTGTTCTTAGTTCAGCTTACCGTGTTTCTTTTCCAGTTTGC
Found at i:62981 original size:43 final size:44
Alignment explanation
Indices: 62897--62985 Score: 153
Period size: 43 Copynumber: 2.0 Consensus size: 44
62887 ACACACCTCA
* *
62897 TCTCTAATCCGGTTGCCGGTTATATCACGTATCGCTACTGCTTT
1 TCTCTAACCCGGTTGCCGGTTATATCACGCATCGCTACTGCTTT
62941 TCTCTAACCCGGTTGCCGGTTA-ATCACGCATCGCTACTGCTTT
1 TCTCTAACCCGGTTGCCGGTTATATCACGCATCGCTACTGCTTT
62984 TC
1 TC
62986 CTTTTCTTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 22 0.51
44 21 0.49
ACGTcount: A:0.16, C:0.30, G:0.18, T:0.36
Consensus pattern (44 bp):
TCTCTAACCCGGTTGCCGGTTATATCACGCATCGCTACTGCTTT
Left flanking sequence: Indices 62397 -- 62896
TTCTAGACCCCTCGTCCGCGGGCGCCACCCGTTACCTGTCATCGCGGCCTCAACGGTTATGCCGT
CACCGTGCGTTTTGACACTAGACGCTCTCTGCACCGGTAGCCGGGCTCGATGCGTGTGAAACGCG
AAGGAACAACGCGGGCCTCGGTGTGGAAGAGCCTGTGATAGTGTGGGGGACATCTGTCTGGGGGT
TGTTACAAAATGTGCTTTCGTGCTGTATGTATTGGAGATCTACCGGTGAAATTGCAACACAACAC
TAAACCACAAACGTCGGCGGCATCGCGGGCACAATACCAAGAAAACTGCTGGCCAGCGATGGTCT
ATTCCACCGGATAAACTTTTATGCACGACCATGCCCGATGACATAGTGCCTGGATCGGAACTGAA
AAACGGTCGACGCAGAGATGAGATCGAGGCGGAGCCCGTACGGTGATGTAACCGTGGAGCGCTTA
CATTAGTGGTCTATGCTGTTTGTACCCGGTTCTATACACACCTCA
Right flanking sequence: Indices 62986 -- 63485
CTTTTCTTCTCCTGCTCTTTCCTGAAAGAACCGGGACATGGGCTTGCAGTCGGGAGCCAACGTCA
AGTTAATCACCTGTAGGGCGTCTGTCGAGCTCATCTCGTCGTTGCCGTTGACGTACTTGAACAGC
TCGGCCCGGAACCCCAGCGCTGGGGTGTCAGGAAGGCTCTCCTTGACCAAGTACTGGTTCAAAAG
GTCAATGAGCACTGGCGAGTCAAAATTGTAGTCGTACAAGTCAATCTTGTCGCCCCCCTCGGCCT
TGGACGACTCGGTGAGGTGGATGCGGTCGTCAAAGTAGCCCAAACAGTGCTCCAACCGCGGGAAC
AGCGCCTTGGTCGCCCCCATGGCCTCCACCACGTACTTGCGGTCCATCAACACCGCATAGACTAG
GTCGTAGTTTATCGAGAGCTGGCGCTCGGGCTCGACCACCCGGCTGAACCGCGGCTCCAACACCT
GGTCAAACACCGCGAGAATCTCCTCGGCCACCGCCAGCACCGTGC
Found at i:65595 original size:21 final size:21
Alignment explanation
Indices: 65558--65597 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
65548 AAATAGGGCT
*
65558 GTTTAGTGTTTATGGGTGTTG
1 GTTTAGTGTGTATGGGTGTTG
65579 GTTTGAGTGTGTA-GGGTGT
1 GTTT-AGTGTGTATGGGTGT
65598 GTTTCGTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.10, C:0.00, G:0.42, T:0.47
Consensus pattern (21 bp):
GTTTAGTGTGTATGGGTGTTG
Left flanking sequence: Indices 65058 -- 65557
TGGCGTCTTCCTCGGGCGCCTGGGTGGCACCGGTGCCCATGGATGTGATGTCATCGCCGTCATCC
TCGAGATCAGCCTCAGGTTCGGAGGTTTCGTTGTCTTTTTCGGAATTTTTCGGGTCTGGGCCGTC
TGAGCGGGTGTTGTAGCGGATGGCGTCGTTGAAAAAGGTGATTCCGTACCGTAGCATGTCGGTAA
ACACCTCGCGATTGTCGCTGGCCCCGTCGGTCATCATCTGGTCGAGGTTGGCCACCATGGTCTGG
CGGAGGGCGTCCTCCACCACGGGGGTAGCAAAGAGCACTTTGTAGAGGCCCTCGTCCTTGGCGTA
GCTCGGGTCGAACAATTGGGCGTACACCAGTGCCATGGGTGCGTGGGTGGGATGGGATGGAGTAG
GGTTGGTGGTACAGGTGGGTGTATGTACGCGTTTTTCGCAGGCCATGGGTGGGATGGGACGAGAG
TAGAAGGAAGAAGGGAAGAAGGGAAAAGCGGGAAGAAATAGGGCT
Right flanking sequence: Indices 65598 -- 66097
GTTTCGTGTGGATACTGTATTTTCATGTTGATCTAGGGATGTGGCTTGGTGTGGATTGGGCATGG
TCTTGGCGTGGCTTTGAAACTGGTAAATACGAGAGGTGAAACAAACAGAGTTGAAACAAACAGAA
TCGGGGGAGAAGAACGCGTCTGTGCTTGTGTTTGGGGGAGGAAGTGGGTTTGGTTCTACGAGAGA
GTTTGTAACAGCTGTGGCTGTGTAGCGAAGGGGAAGGTCGGTTCGGTGAGCCGGGAGATTACGGG
AGATGGGCTCGTGGTGTGTTGTTGCACGAGTGAGGGGTAAGGTGATAGCTTACAACGCGTTGGTC
GTATAGTTAACCCCTGTGTTTACTTTTTGGTTCTCACTAGTAATCCCACGTATTTGCAAAAGTTG
TAGAAAATCTGAAGAAGTCAATATTATATTTGCCAGATTGAGTACACACGAACACTCCAGGCCAT
TCCGCCCCTTCCATAACGTCACCGGAATCCGCTAACATGTTTACA
Found at i:65717 original size:15 final size:15
Alignment explanation
Indices: 65694--65726 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
65684 GGTAAATACG
65694 AGAGGTGAAACAAAC
1 AGAGGTGAAACAAAC
*
65709 AGAGTTGAAACAAAC
1 AGAGGTGAAACAAAC
65724 AGA
1 AGA
65727 ATCGGGGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.12, G:0.24, T:0.09
Consensus pattern (15 bp):
AGAGGTGAAACAAAC
Left flanking sequence: Indices 65194 -- 65693
GGTGTTGTAGCGGATGGCGTCGTTGAAAAAGGTGATTCCGTACCGTAGCATGTCGGTAAACACCT
CGCGATTGTCGCTGGCCCCGTCGGTCATCATCTGGTCGAGGTTGGCCACCATGGTCTGGCGGAGG
GCGTCCTCCACCACGGGGGTAGCAAAGAGCACTTTGTAGAGGCCCTCGTCCTTGGCGTAGCTCGG
GTCGAACAATTGGGCGTACACCAGTGCCATGGGTGCGTGGGTGGGATGGGATGGAGTAGGGTTGG
TGGTACAGGTGGGTGTATGTACGCGTTTTTCGCAGGCCATGGGTGGGATGGGACGAGAGTAGAAG
GAAGAAGGGAAGAAGGGAAAAGCGGGAAGAAATAGGGCTGTTTAGTGTTTATGGGTGTTGGTTTG
AGTGTGTAGGGTGTGTTTCGTGTGGATACTGTATTTTCATGTTGATCTAGGGATGTGGCTTGGTG
TGGATTGGGCATGGTCTTGGCGTGGCTTTGAAACTGGTAAATACG
Right flanking sequence: Indices 65727 -- 66226
ATCGGGGGAGAAGAACGCGTCTGTGCTTGTGTTTGGGGGAGGAAGTGGGTTTGGTTCTACGAGAG
AGTTTGTAACAGCTGTGGCTGTGTAGCGAAGGGGAAGGTCGGTTCGGTGAGCCGGGAGATTACGG
GAGATGGGCTCGTGGTGTGTTGTTGCACGAGTGAGGGGTAAGGTGATAGCTTACAACGCGTTGGT
CGTATAGTTAACCCCTGTGTTTACTTTTTGGTTCTCACTAGTAATCCCACGTATTTGCAAAAGTT
GTAGAAAATCTGAAGAAGTCAATATTATATTTGCCAGATTGAGTACACACGAACACTCCAGGCCA
TTCCGCCCCTTCCATAACGTCACCGGAATCCGCTAACATGTTTACAAGCCTCTTAATGTGGTTGC
AATGGTTGACGTCATTGGTACCACGCTGGTATAGGCAGTGACTAGCTGTCAAACGCTATGTATGT
TTACCTCACATCCACTCCCTGTTCAGCACTTCACAACTGTCACGT
Found at i:68687 original size:21 final size:21
Alignment explanation
Indices: 68633--68688 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
68623 AAGACCGAAG
* *
68633 AGAAGGACGATGAGGCTAAGC
1 AGAAGGACGACGACGCTAAGC
68654 AGAAGGAAC-ACGACGCTAAGC
1 AGAAGG-ACGACGACGCTAAGC
*
68675 AGAAGGCCGACGAC
1 AGAAGGACGACGAC
68689 ACAGAGAAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.03
21 27 0.90
22 2 0.07
ACGTcount: A:0.39, C:0.21, G:0.34, T:0.05
Consensus pattern (21 bp):
AGAAGGACGACGACGCTAAGC
Left flanking sequence: Indices 68133 -- 68632
GTTTGCCGAGATCAACCGGGTGAACGTGACCGAGGCGTACGGAGGCTGGGTGGAGAAGCAGCAGG
CCATCGCGTTGGTGCCCAAAAAGGACGGCACCGGGTACGTGGACAAAGTGGTCAATGCCACCACG
GGCCGCATGCACTTGGCGTACTTTGACAGTGCTGAGGACAAGCACGGGCGGTTTATCACCTCGCT
GGACAAATGGCACGTTACCCAGAAGACCGACATTTGGTACAACAAGGACGAGCACCGGGTGTATG
CCCTTGGCACCCAGAACTCGTCGATGGACTCGACGGTGTTTGGGGCCAAGGTCGATGCGGAGAAC
GACTTGTGGTACCTCACCGACCCCGAGAAGGAGGGGTTGCACACGTTGGACATGTCACCGGACGG
GAAGTTGGCCAACATCCAGTACAAGGGCCCGGAGTTGGTTCCGTGGCAGCGGTTGGTGGAGTTGG
GGTACGTGAGAGCGTCGCTCGCAAAGAGAGACGAGAAGACCGAAG
Right flanking sequence: Indices 68689 -- 69188
ACAGAGAAGCCCGAGGAGCACCAGGAGCCCGCCCAGGCTGTCAAGCTCCCCCAGAAGGACCCGGC
TCCCGAAGACAAGGCCCCCGAAAAACTCACGAAGCCGTACGAGGTGGTCACCAAGATGTTCCCCA
ACGTGATGCGCAACGAGCACATCATCGGGTTGAAGAAGAACACCAACCTCCCCACGCGCACGTAC
TACCAGGTCCAGGTCAACGACGACGACGAGAACCCGGTCATGGTCAACGTGATGCAGGTGCTTCC
GCCCGGGTTCGACCCCACGAAGAAGTACCCGCTCCTCGTGGACGTGTACGGCGGTCCGGGCGCCC
AGAAGGTGGACAAATCGCTGGCGATCATGATGAAACAGACCTTCTCCGCCATGCTCGACTGCATT
GTGCTTGCCATAGACCCGCGTGGGACCGGTGGCCAGGACTGGGCGTTTGCCTCGTGGGCCCGCGA
CAAGATTGGCTACTGGGAGCCCCGTGACGTGGTGCTGGTGGTCAA
Found at i:79226 original size:13 final size:12
Alignment explanation
Indices: 79174--79227 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
79164 GCTACAATAG
79174 CAATTGTTACTAC
1 CAATTGTTA-TAC
* *
79187 CAAATGTTAACAC
1 CAATTGTT-ATAC
79200 CAATTGTTTATAC
1 CAATTG-TTATAC
79213 CAATTGTTAGTAC
1 CAATTGTTA-TAC
79226 CA
1 CA
79228 CATGTTTGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 3 0.09
13 28 0.82
14 3 0.09
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.35
Consensus pattern (12 bp):
CAATTGTTATAC
Left flanking sequence: Indices 78674 -- 79173
GCGACTCGGTTGTGGGGTACCCGGGGAAACTCGGGAGGGGCGAGGCGGCCAGGGACACTTGGCAG
AGAGGGGTGGCGTTGGGCTGGACGGGGGGCTGGATGGAAGCTGGTTTGCTCGGTTTTTAGTAGAG
CTACGTGGCTTCTATTTAGTACTTTTACCAGTTGTGATTTGGGGTTTCGAGTCGCTTTCGCATTT
AGGTTTATTAGTTTGACCCGGGACTATCGGCCGCGATAGAGGCAACGGCCAAGCCAAAGGAAACA
AAAAAGTCCGACGAGGGTCGTTCCTACCGGATGATCCGACGAAAGTCGCGCCAGACAAGCCGAGA
CGACCAAATGGCCCGATTTGGTAACGCCTCGTACCATCCGGATGGGGTCAGATTGAGTCAGGCCT
CAGTCTCGGGGTCGAGACTGTTCACAAGAGTTCTAAATTTACCTTGTGAAGTCTGTGTTATGTAA
TCATCGGACAGTGTCTAATCTGGGTCTTGTGATAAGCTACAATAG
Right flanking sequence: Indices 79228 -- 79727
CATGTTTGCTAAAGTAGTCCCAACCAGTGTACTGGTCTACCATGTCTCGTCGTATTAGTCATTAT
GTATCGCCCTGCGATTCTTACAGCTCGTGGGCTGGTTCTGTTCGTTCTTCTCTCACCTAGTCTTC
GTCGATGCTCACTGAGAGCAGGCCCGTCGAGCTCCGGGAGCTCTGCGGGCTAGCTGGCTCCTTCT
TCGGGCTCTGATACCACCGGAGCACATGGGCTGGCTGCGCGTACCGCGGTCGGTACTGGCTATTC
ACCGACGGCTCCAGGCGCAACGACACCGCCCGCGGCCGGTCAAAGTGGAGGTCTTGCCTGTAGGT
GTTCACCTGGGACTCCAGGGCCACCTGGATCATCGGAGGAGCAGTGAACTTGGGCGACGGAGGGC
CCTCGGGAGCCGTGACAAACAGGTCCGCGGGCGGCAGCCCAGCTTCGAGATCCACCAACGGGGTT
GTCAGGCACCCCACCGAGGGCTGCAGAGCCACTGACGGGCGCGTC
Found at i:81837 original size:17 final size:17
Alignment explanation
Indices: 81815--81847 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81805 CATTTGAATG
81815 AATCCACTTCACAAAGA
1 AATCCACTTCACAAAGA
81832 AATCCACTTCACAAAG
1 AATCCACTTCACAAAG
81848 GAACCCACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.30, G:0.06, T:0.18
Consensus pattern (17 bp):
AATCCACTTCACAAAGA
Left flanking sequence: Indices 81315 -- 81814
GGGGCTACCAGGGGCGGTGGAGAGCTGGGGGAAGGTGGTGGTGGGTGGTTTTACTGTAGTGTGTA
GGGTGGAGGCCTCTTTTTTTGTGTTGCTGCCGGGTCCCGTTCCAAAAATAGCCCGGTTGCTTCTT
GCCTTCGCCACGGCTGATGCAGGGAATGTGACCAGTGGGACAATAGGGTAGTGGGTGGAACAGAC
GGGCTGTTCTAGGTGGTTGCCAAGTGGGACAGCCAGGGGATCTGTGCAGAGGTGGGGAAGAAGTA
TCCATAAGGGTGGATTCAGAAGAGAACCACGAATAGGTTACGAACTGATTAACGAGTTCCAGATC
AACCAATCACCGAACCAGTTTCAATTCCTCGCTTAGAGTAACCATGTGGTTAAGCAATAGAAGTA
GGCTCCAACAAGCTCATGGAATATTAGAAGAACTCAGTTCGCGAATGAACCCAGTTCGCAAGGTA
CTCACTGCACGAATGAAGCTACTTCCCAAGATATCCATTTGAATG
Right flanking sequence: Indices 81848 -- 82347
GAACCCACCTCCTAACAAAACCACCTCCCAACGAACCACCTCCCCACTTCCCCACTTCCCCACTT
CTACACTCTTCATATCATTACATTATTACTACACTCTATTCATACACTCACCGTCTCTATAACGT
GGCCACGCCTCCAAGGGCCAGCCCTAGTGGTGAGATTGGTAGGCTTGCCGGCGCGGGTAGTCCTC
GTAAACACTGCGGCCCAGCGGCTGGCGCAGGTGGCCAGGACGGAACTCGTCCAGCTGGTACTGGT
TACCCTGGTTGTACCCCGCGTCGTACCCATTGGCATCGTCGTACGGGTTGGCGTTGTAGTCGCCA
CCAGCGTAGCCATTGTCGGCCCCGTAGCCAGTGCCATTGCCAGCATTGTACCCATTGTTGCCTTC
ATACCCATTGTTGTGCGCAGGGGGAGTAGGCGGGGTCTCGTCGTCGTCCACAAAGTAGAACTTAC
CGTCGGGAGCCTGTTGCGAGTACACGCCCGGATACTCGGTGCGCA
Found at i:81855 original size:17 final size:17
Alignment explanation
Indices: 81818--81855 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
81808 TTGAATGAAT
*
81818 CCACTTCACAAAGAAAT
1 CCACTTCACAAAGAAAC
*
81835 CCACTTCACAAAGGAAC
1 CCACTTCACAAAGAAAC
81852 CCAC
1 CCAC
81856 CTCCTAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.37, G:0.08, T:0.13
Consensus pattern (17 bp):
CCACTTCACAAAGAAAC
Left flanking sequence: Indices 81318 -- 81817
GCTACCAGGGGCGGTGGAGAGCTGGGGGAAGGTGGTGGTGGGTGGTTTTACTGTAGTGTGTAGGG
TGGAGGCCTCTTTTTTTGTGTTGCTGCCGGGTCCCGTTCCAAAAATAGCCCGGTTGCTTCTTGCC
TTCGCCACGGCTGATGCAGGGAATGTGACCAGTGGGACAATAGGGTAGTGGGTGGAACAGACGGG
CTGTTCTAGGTGGTTGCCAAGTGGGACAGCCAGGGGATCTGTGCAGAGGTGGGGAAGAAGTATCC
ATAAGGGTGGATTCAGAAGAGAACCACGAATAGGTTACGAACTGATTAACGAGTTCCAGATCAAC
CAATCACCGAACCAGTTTCAATTCCTCGCTTAGAGTAACCATGTGGTTAAGCAATAGAAGTAGGC
TCCAACAAGCTCATGGAATATTAGAAGAACTCAGTTCGCGAATGAACCCAGTTCGCAAGGTACTC
ACTGCACGAATGAAGCTACTTCCCAAGATATCCATTTGAATGAAT
Right flanking sequence: Indices 81856 -- 82355
CTCCTAACAAAACCACCTCCCAACGAACCACCTCCCCACTTCCCCACTTCCCCACTTCTACACTC
TTCATATCATTACATTATTACTACACTCTATTCATACACTCACCGTCTCTATAACGTGGCCACGC
CTCCAAGGGCCAGCCCTAGTGGTGAGATTGGTAGGCTTGCCGGCGCGGGTAGTCCTCGTAAACAC
TGCGGCCCAGCGGCTGGCGCAGGTGGCCAGGACGGAACTCGTCCAGCTGGTACTGGTTACCCTGG
TTGTACCCCGCGTCGTACCCATTGGCATCGTCGTACGGGTTGGCGTTGTAGTCGCCACCAGCGTA
GCCATTGTCGGCCCCGTAGCCAGTGCCATTGCCAGCATTGTACCCATTGTTGCCTTCATACCCAT
TGTTGTGCGCAGGGGGAGTAGGCGGGGTCTCGTCGTCGTCCACAAAGTAGAACTTACCGTCGGGA
GCCTGTTGCGAGTACACGCCCGGATACTCGGTGCGCACCACGGGG
Found at i:81886 original size:15 final size:16
Alignment explanation
Indices: 81852--81891 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
81842 ACAAAGGAAC
*
81852 CCACCTCCTAACAAAA
1 CCACCTCCCAACAAAA
*
81868 CCACCTCCCAAC-GAA
1 CCACCTCCCAACAAAA
81883 CCACCTCCC
1 CCACCTCCC
81892 CACTTCCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.33, C:0.55, G:0.03, T:0.10
Consensus pattern (16 bp):
CCACCTCCCAACAAAA
Left flanking sequence: Indices 81352 -- 81851
GTGGTGGGTGGTTTTACTGTAGTGTGTAGGGTGGAGGCCTCTTTTTTTGTGTTGCTGCCGGGTCC
CGTTCCAAAAATAGCCCGGTTGCTTCTTGCCTTCGCCACGGCTGATGCAGGGAATGTGACCAGTG
GGACAATAGGGTAGTGGGTGGAACAGACGGGCTGTTCTAGGTGGTTGCCAAGTGGGACAGCCAGG
GGATCTGTGCAGAGGTGGGGAAGAAGTATCCATAAGGGTGGATTCAGAAGAGAACCACGAATAGG
TTACGAACTGATTAACGAGTTCCAGATCAACCAATCACCGAACCAGTTTCAATTCCTCGCTTAGA
GTAACCATGTGGTTAAGCAATAGAAGTAGGCTCCAACAAGCTCATGGAATATTAGAAGAACTCAG
TTCGCGAATGAACCCAGTTCGCAAGGTACTCACTGCACGAATGAAGCTACTTCCCAAGATATCCA
TTTGAATGAATCCACTTCACAAAGAAATCCACTTCACAAAGGAAC
Right flanking sequence: Indices 81892 -- 82391
CACTTCCCCACTTCCCCACTTCTACACTCTTCATATCATTACATTATTACTACACTCTATTCATA
CACTCACCGTCTCTATAACGTGGCCACGCCTCCAAGGGCCAGCCCTAGTGGTGAGATTGGTAGGC
TTGCCGGCGCGGGTAGTCCTCGTAAACACTGCGGCCCAGCGGCTGGCGCAGGTGGCCAGGACGGA
ACTCGTCCAGCTGGTACTGGTTACCCTGGTTGTACCCCGCGTCGTACCCATTGGCATCGTCGTAC
GGGTTGGCGTTGTAGTCGCCACCAGCGTAGCCATTGTCGGCCCCGTAGCCAGTGCCATTGCCAGC
ATTGTACCCATTGTTGCCTTCATACCCATTGTTGTGCGCAGGGGGAGTAGGCGGGGTCTCGTCGT
CGTCCACAAAGTAGAACTTACCGTCGGGAGCCTGTTGCGAGTACACGCCCGGATACTCGGTGCGC
ACCACGGGGGCCCGGTTCAACGTCTCCATGTCCACCAGACTCAGC
Found at i:81899 original size:8 final size:8
Alignment explanation
Indices: 81883--81913 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
81873 TCCCAACGAA
*
81883 CCACCTCC
1 CCACTTCC
81891 CCACTTCC
1 CCACTTCC
81899 CCACTTCC
1 CCACTTCC
81907 CCACTTC
1 CCACTTC
81914 TACACTCTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.65, G:0.00, T:0.23
Consensus pattern (8 bp):
CCACTTCC
Left flanking sequence: Indices 81383 -- 81882
TGGAGGCCTCTTTTTTTGTGTTGCTGCCGGGTCCCGTTCCAAAAATAGCCCGGTTGCTTCTTGCC
TTCGCCACGGCTGATGCAGGGAATGTGACCAGTGGGACAATAGGGTAGTGGGTGGAACAGACGGG
CTGTTCTAGGTGGTTGCCAAGTGGGACAGCCAGGGGATCTGTGCAGAGGTGGGGAAGAAGTATCC
ATAAGGGTGGATTCAGAAGAGAACCACGAATAGGTTACGAACTGATTAACGAGTTCCAGATCAAC
CAATCACCGAACCAGTTTCAATTCCTCGCTTAGAGTAACCATGTGGTTAAGCAATAGAAGTAGGC
TCCAACAAGCTCATGGAATATTAGAAGAACTCAGTTCGCGAATGAACCCAGTTCGCAAGGTACTC
ACTGCACGAATGAAGCTACTTCCCAAGATATCCATTTGAATGAATCCACTTCACAAAGAAATCCA
CTTCACAAAGGAACCCACCTCCTAACAAAACCACCTCCCAACGAA
Right flanking sequence: Indices 81914 -- 82413
TACACTCTTCATATCATTACATTATTACTACACTCTATTCATACACTCACCGTCTCTATAACGTG
GCCACGCCTCCAAGGGCCAGCCCTAGTGGTGAGATTGGTAGGCTTGCCGGCGCGGGTAGTCCTCG
TAAACACTGCGGCCCAGCGGCTGGCGCAGGTGGCCAGGACGGAACTCGTCCAGCTGGTACTGGTT
ACCCTGGTTGTACCCCGCGTCGTACCCATTGGCATCGTCGTACGGGTTGGCGTTGTAGTCGCCAC
CAGCGTAGCCATTGTCGGCCCCGTAGCCAGTGCCATTGCCAGCATTGTACCCATTGTTGCCTTCA
TACCCATTGTTGTGCGCAGGGGGAGTAGGCGGGGTCTCGTCGTCGTCCACAAAGTAGAACTTACC
GTCGGGAGCCTGTTGCGAGTACACGCCCGGATACTCGGTGCGCACCACGGGGGCCCGGTTCAACG
TCTCCATGTCCACCAGACTCAGCGCGCGGTGGAACGTCAGGTCCT
Found at i:85436 original size:10 final size:10
Alignment explanation
Indices: 85423--85471 Score: 80
Period size: 10 Copynumber: 4.8 Consensus size: 10
85413 GAAAGGAAAG
*
85423 GAATGTAAGT
1 GAATGTGAGT
85433 GAATGTGAGT
1 GAATGTGAGT
85443 GAATGTGAGT
1 GAATGTGAGT
85453 GAATGTGAGT
1 GAATGTGAGT
85463 GGAATGTGA
1 -GAATGTGA
85472 CGGTAGACGC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
10 29 0.78
11 8 0.22
ACGTcount: A:0.33, C:0.00, G:0.39, T:0.29
Consensus pattern (10 bp):
GAATGTGAGT
Left flanking sequence: Indices 84923 -- 85422
GATCGGTCGGGACGACTGCAAAACAGTTGGCTCAGAGTGCTTACGTTTGGCTCGCCACGGTTGCG
AACGCGCAGTGGGTTCCGTGTTTCAGACGCATGGCTGACGAGTAGGAGCACCGGTTGCTGGCTCG
GGCACGCTCGGGCGATCTAATTTTAGCTGCATTGGCGAGCTTCGGGGGGAGATCAGGTACGCGAG
GGAACAGAAGAGCGACGAAACGGTGGGCCGTCGTCTCGTTGTCGTTGGTTCTGGCCTTATGTTCC
GCCAAGATCGCAATGCCCCGCGGGTGCCCCGCGTACACCACCTGCACACGGCCGTGTCGTCACCG
TTGTGGTTGCTCGAGTGAGCAACTTTGGGCGGTGATCCGACAATGGCGATCGGAGCACGGCGCTA
GCGTAGGGTGGGCGGTGGTCGAGATAGGTGGGTTGGGGTGGTCGTTTCTTTTGGCGGCAAAGGAA
CGAGAGGACGAGGATGTGTGACAAGAATGTGAAAGGAAAGGAAAG
Right flanking sequence: Indices 85472 -- 85971
CGGTAGACGCTAGTGACGCTCGTGACAGGTAACTGGTGGCCCAACGTGACAAATCCTGTGGACTG
ACGATGAAACATGAGGAAATTACTGTCGGAATGCGCCGTATCCTGTGATTCATTGATTCGTTTTG
ATACACGTACCCCGCGCGTGCCCCACTTCGAATGTCTAAACCACTACGACCTCTTCACACTATCC
TCCACCACAAACTTCACATTCTCACAGCCCTCACCAAACTTCACACCCCTTCCCACTACCTCCAC
CCCCCTTCACCTCTGGCAAAACCTTCAATAAATAAATAATAATAAATAGAATAAATAGTCATTAG
TTGTTGGGGCCCTTAAGTTTGTTTGCGCGCTTCTTCATTGCCTCGCTGAACCCCAACGCCACTGG
CCACACCGGAGCATCGGCCAAAATGCGGATGCCCAAGTACAACAGCTTCACCAGCAACTGCACCA
GCTTCACCTCTTGGCTGATCTCGGTGGACAACTGGTCGGCGTCGG
Found at i:87835 original size:30 final size:30
Alignment explanation
Indices: 87799--87883 Score: 125
Period size: 30 Copynumber: 2.8 Consensus size: 30
87789 AGGAGGTGGT
*
87799 CCAGGTGCGCCTGGCCGAGCTGGTGGTCCG
1 CCAGGTGCGCCTGGCCGAGCTGGTGGTCCA
* *
87829 CCAGGTGCGCTTGGCCAAGCTGGTGGTCCA
1 CCAGGTGCGCCTGGCCGAGCTGGTGGTCCA
* *
87859 TCAGGTGCGACTGGCCGAGCTGGTG
1 CCAGGTGCGCCTGGCCGAGCTGGTG
87884 CGCATGCTCG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.11, C:0.29, G:0.41, T:0.19
Consensus pattern (30 bp):
CCAGGTGCGCCTGGCCGAGCTGGTGGTCCA
Left flanking sequence: Indices 87299 -- 87798
GGACAAGTTGAAGAGCAACTGGGTGTGCTGCTCGGCAAACGAGTAGAGGGCGCCAATCAGACACA
TCAGCAAGAGCAACGGGATGTTCTCCACGTTGTTGACCCGCGGGTTCTTGAGCAGCGGCAAGTGG
ATGAACGGGAAGTACTTGTTGAACTCCAGCTCGTACATCCCCATGTAGTGGTTGAGCTCGTCCAC
CGTGGGGAACAGCAGGTCCAGCCGCAGCAACAGCAACAAGATGCGGTTGCGGAGCTCGACGGTGA
TGAACGGGTGCGGGGTCGCGGGGGTGGCGGTGGCCCGCAAGTCGTGCTGGCGGGTGCGGAACAAC
AGCAGGAGCGGCAGCGACCCCAGCAGCGTGGGCTCCATCGCCTCGGAGAACTCGGGCACCGGCTC
CGTGGGCACCAGGATGAGCTCGTGGAGCCAGTCGTCGTCGTCGTCGTCGAACTGGAAGTCCATGC
GCGGCTTCTTTGCGGGCGGCTCGAGCGGGTGGTCCAGGAGGTGGT
Right flanking sequence: Indices 87884 -- 88383
CGCATGCTCGAGCTGGCCAAGCGTGATCAGCAGCTGGCGCGGGCGAGGCAGCGGGAACACCTCGG
GCGTGGACCCGGGCAAGTGGTGGGGATGGCTCGGGTTGGCAAAGTTGGTGGTGTTCTCGACAAAG
TACTGCAAGAGGTTCTTGAACAGCTGCGGCGGGTCCTGGTGCCAGTCAAACGTGCCAAGGTCCAT
CTCGAGCCCCAGGAGAAGGAGGGTCTTGTCCTCGGCCGGAGGGTCGTGTGGCTGGGCATAGCCCG
AGCCCAGCGCCGCGGAAAACGACGCGTGGCGCCCGTGGCCCTGCAACCGGTCCATGTGGCGGCCC
AGAATCGCGTTGGGCGTCAGCTTGGCCAGCCCCTGGGGCAGCTTCAGCTCCTTTTTGGGCGGCAG
CCGCGGGAGCATGCCCGAGCCCGTCCACGGCGGGGTGTTTTGCAGCAGCAGCGTGGGCATGGGCA
GTGGCAACTGCTTGTGCGGCAGGAACGGCGAGTCGTCCCCGGGCA
Found at i:90329 original size:20 final size:20
Alignment explanation
Indices: 90296--90360 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
90286 GGGCTACGGT
*
90296 TTGT-GGCTTGCCTCTGGGT
1 TTGTGGGCTTGCCTCTGGGC
*
90315 TTGTGGGCCTGCCTCTGGGC
1 TTGTGGGCTTGCCTCTGGGC
90335 TTGTGGGCTTGCCTCTGGGC
1 TTGTGGGCTTGCCTCTGGGC
90355 TTGTGG
1 TTGTGG
90361 CCTACAATCC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 4 0.10
20 38 0.90
ACGTcount: A:0.00, C:0.23, G:0.40, T:0.37
Consensus pattern (20 bp):
TTGTGGGCTTGCCTCTGGGC
Left flanking sequence: Indices 89796 -- 90295
AGCCTTGCACACCCCCAACCCGGCGAACTGGGTGGCTATCTCGGTCTGGTGGTTGCCCATGAGGT
CCTCGTTGGGCACCACCACGAGCCGGAGCCCGCGCCGGAGCGCGTCGAGAATGGCCCCGGTTCCG
GCGTGGCTCACAACGACGTCAGCGTGAGCAAGCAAAGCGTCAACGTCATTGGTTAGCCCGATCGC
GGTCACGTGATCGGGGATTCCCAACTGCTCGACGAACCGGGCGCTGACGTCGGTGCCGTCGCGGA
GCTCGCGCCCGTACTGGACGACGATGTCGGAGAATCCGAGCTCGGCGAGCTCGGCGAGGAACTGG
GGCGCGAGCACCTTGGCGAGGAGGCTCTTGAACGTGACGGTGGCCCCCGTTGTCACCACCAACTT
CATGAGTGCGAAATGAGACAGTAAACAATAAGAGTTTATTTGGTGACGTAAGTTAAAATCAGGAA
TGGGCATCAACGCGGGGGATTGTGGTTTGTGTCGAGGGCTACGGT
Right flanking sequence: Indices 90361 -- 90860
CCTACAATCCCCGTGGGGTGACCCCCACCAATGAATACCCCCACTACGCTCGCAGCCCAAAGCTC
GTAGCCCTAACTAGGAAGCCAAGGAGCGAGTTCGGCGATTAGAACAATGCGGTCGGGAGTGACCC
GTCGACAGACACCCCGGCAATATGGGTCTCGAGAATCCCCCCTCGATTTCGCATCCGTGCCCGAT
GGCATGTTAACCACAGTGGTGGTCTGATCGGTTAGGAGCATGCATACGGATCGAGGAGACTCGGG
AACTAATCCCGGTGGTCACGACCGGCCGCAATTGTAGCAATTGTTTGTAGAACCTTCTAGCCCAC
GCTCACACACTAACCACCGTTCACTGCTTCTCATCTACGCTCTCATCTACGCTCTCATCTACACT
CTCCTACGCTCTCATCTACGCTCTAAGATCTGCCCCCCACCGGCCTGCATGCCCCCCCACCGCAC
GATTACGTAGACCCACGCCAACGTAAAACCAGGTGAAATCTCCCG
Found at i:90731 original size:12 final size:12
Alignment explanation
Indices: 90714--90774 Score: 99
Period size: 12 Copynumber: 5.2 Consensus size: 12
90704 GTTCACTGCT
90714 TCTCATCTACGC
1 TCTCATCTACGC
90726 TCTCATCTACGC
1 TCTCATCTACGC
*
90738 TCTCATCTACAC
1 TCTCATCTACGC
90750 TCTC--CTACGC
1 TCTCATCTACGC
90760 TCTCATCTACGC
1 TCTCATCTACGC
90772 TCT
1 TCT
90775 AAGATCTGCC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.20
12 36 0.80
ACGTcount: A:0.16, C:0.43, G:0.07, T:0.34
Consensus pattern (12 bp):
TCTCATCTACGC
Left flanking sequence: Indices 90214 -- 90713
TAAGAGTTTATTTGGTGACGTAAGTTAAAATCAGGAATGGGCATCAACGCGGGGGATTGTGGTTT
GTGTCGAGGGCTACGGTTTGTGGCTTGCCTCTGGGTTTGTGGGCCTGCCTCTGGGCTTGTGGGCT
TGCCTCTGGGCTTGTGGCCTACAATCCCCGTGGGGTGACCCCCACCAATGAATACCCCCACTACG
CTCGCAGCCCAAAGCTCGTAGCCCTAACTAGGAAGCCAAGGAGCGAGTTCGGCGATTAGAACAAT
GCGGTCGGGAGTGACCCGTCGACAGACACCCCGGCAATATGGGTCTCGAGAATCCCCCCTCGATT
TCGCATCCGTGCCCGATGGCATGTTAACCACAGTGGTGGTCTGATCGGTTAGGAGCATGCATACG
GATCGAGGAGACTCGGGAACTAATCCCGGTGGTCACGACCGGCCGCAATTGTAGCAATTGTTTGT
AGAACCTTCTAGCCCACGCTCACACACTAACCACCGTTCACTGCT
Right flanking sequence: Indices 90775 -- 91274
AAGATCTGCCCCCCACCGGCCTGCATGCCCCCCCACCGCACGATTACGTAGACCCACGCCAACGT
AAAACCAGGTGAAATCTCCCGTTTCTCACCCAATTGCAATCATGACCCTCTCAAAGCACTGGAAC
TACGCCGACAAGGACCTCGTGGTGGCCAATCTCCAAGGCCTCGTCCGCGCCAACCCGCTGCTCTC
GTTGATCGAGCTGGAAAAGGTGGTGTTCCGCAAGCCCCTGGCAGACAAGGTGGCGATCATCTCCG
GTGGCGGAGCGGGCCACGAGCCGCTCCACGGGGGCTACGTGGGCTCGAACCTCTTGGACGCCGCC
GTGCTGGGCCTGATCTTTGCCCTGCCCGCCACCCGCCAGATCATGGCCGCCATTAAGTCGGTGGC
CACCAAGGAGCACGGGGTGGTGCTCGTGGTCAAAAACTACACGGGCGACGTGCTCCACTTTGGCT
TGGTGGCCGAGCGCGCCAAGGCCGAGGGCTACAACGCCGAGCTCT
Found at i:90760 original size:22 final size:23
Alignment explanation
Indices: 90714--90774 Score: 97
Period size: 22 Copynumber: 2.7 Consensus size: 23
90704 GTTCACTGCT
90714 TCTCATCTACGCTCTCATCTACGC
1 TCTCATCTACGCTCTCA-CTACGC
*
90738 TCTCATCTACACTCTC-CTACGC
1 TCTCATCTACGCTCTCACTACGC
90760 TCTCATCTACGCTCT
1 TCTCATCTACGCTCT
90775 AAGATCTGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 20 0.57
24 15 0.43
ACGTcount: A:0.16, C:0.43, G:0.07, T:0.34
Consensus pattern (23 bp):
TCTCATCTACGCTCTCACTACGC
Left flanking sequence: Indices 90214 -- 90713
TAAGAGTTTATTTGGTGACGTAAGTTAAAATCAGGAATGGGCATCAACGCGGGGGATTGTGGTTT
GTGTCGAGGGCTACGGTTTGTGGCTTGCCTCTGGGTTTGTGGGCCTGCCTCTGGGCTTGTGGGCT
TGCCTCTGGGCTTGTGGCCTACAATCCCCGTGGGGTGACCCCCACCAATGAATACCCCCACTACG
CTCGCAGCCCAAAGCTCGTAGCCCTAACTAGGAAGCCAAGGAGCGAGTTCGGCGATTAGAACAAT
GCGGTCGGGAGTGACCCGTCGACAGACACCCCGGCAATATGGGTCTCGAGAATCCCCCCTCGATT
TCGCATCCGTGCCCGATGGCATGTTAACCACAGTGGTGGTCTGATCGGTTAGGAGCATGCATACG
GATCGAGGAGACTCGGGAACTAATCCCGGTGGTCACGACCGGCCGCAATTGTAGCAATTGTTTGT
AGAACCTTCTAGCCCACGCTCACACACTAACCACCGTTCACTGCT
Right flanking sequence: Indices 90775 -- 91274
AAGATCTGCCCCCCACCGGCCTGCATGCCCCCCCACCGCACGATTACGTAGACCCACGCCAACGT
AAAACCAGGTGAAATCTCCCGTTTCTCACCCAATTGCAATCATGACCCTCTCAAAGCACTGGAAC
TACGCCGACAAGGACCTCGTGGTGGCCAATCTCCAAGGCCTCGTCCGCGCCAACCCGCTGCTCTC
GTTGATCGAGCTGGAAAAGGTGGTGTTCCGCAAGCCCCTGGCAGACAAGGTGGCGATCATCTCCG
GTGGCGGAGCGGGCCACGAGCCGCTCCACGGGGGCTACGTGGGCTCGAACCTCTTGGACGCCGCC
GTGCTGGGCCTGATCTTTGCCCTGCCCGCCACCCGCCAGATCATGGCCGCCATTAAGTCGGTGGC
CACCAAGGAGCACGGGGTGGTGCTCGTGGTCAAAAACTACACGGGCGACGTGCTCCACTTTGGCT
TGGTGGCCGAGCGCGCCAAGGCCGAGGGCTACAACGCCGAGCTCT
Found at i:94476 original size:16 final size:16
Alignment explanation
Indices: 94451--94485 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
94441 AAACCCTTCT
94451 TCAAAACGACTCTACA
1 TCAAAACGACTCTACA
*
94467 TCAAAGCGACTCTACA
1 TCAAAACGACTCTACA
94483 TCA
1 TCA
94486 CGAATCTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.40, C:0.31, G:0.09, T:0.20
Consensus pattern (16 bp):
TCAAAACGACTCTACA
Left flanking sequence: Indices 93951 -- 94450
TCCCAACGGTCCCCAGAGTTATTAAGCTGGCTGCCTCGGTGCACACAACCGGCACATCGGTAGCC
ATGGCTTCCCGACGACGGGTACGGGCTCCGGTTCCCTTGGCGGTCGACTTGAGGCCAAAAGTGCC
AAGCACGTACATGCGGGCCACGGCGTCCAGAGGAGAGTAAATGAGCGAGTCCATGAGAAATGGAG
AAGACAATTGATCTTTTTTTATAGCATTTTCAAGGGTGGTGGATGTTGTGTGCGTGGCGTGACGA
TCTGTCCCAGAGGTATCAAAAGAGGCCTAGACCGACGCGTGTTGAGACGCGTAAAAAGGAAGCTA
TTTTAGAAGTAGAGATAGTTTCCATCTTGCAAGGTTATTTTCTACACAACTAGCTCGGTTTCTGT
TCTGAATCCGTCATATTTTACTTGGTTGCAAAACAAGTCCCAAAACTGGAACCTTGAGACACCAA
GTAACTTGCTGCATGTGGATCCACCCCACTGTATCAAACCCTTCT
Right flanking sequence: Indices 94486 -- 94985
CGAATCTACATCAACACACCACTACGTCAAAACAACCTACCTAAACCCATCCTTTCCGTGTCAAT
TCGATCTATTACTAATTAGTCTCGTTCATCCAGTCCAACGTGTACTTGATCCCCTGTTCCAAGTC
CACCGCGGGGGTGTACCCCAACAACGTCTTCGCCTTCGTAATGTCGTGGTACCGGTTGGCACAAA
CCACCTTCACTCTGAAAGGAGTAATGCCGGGCTCCTTCCCGAGCATGTTCAGGACAAACTCCGAC
ACGTAGCCCAAGCAGATGGCCACCGGGCGCGCCAACTTGACGTAGCTCTTGTCAACGATCCCGTC
CTGCTTCCACACCGTACGCGCAAGCGTCCAGAAGTAGGTGGGGGCGTCGTTGGTGATGAAAAACG
TCTCGCCAGCAATGGCCTTGATCTCGTCATCCGACCCGCCCAAAAGCTTCTGGGTAGCCAACACG
TGCGCGTCAGCCACGTTCCCGACGTAGGTCCAGTCAAACAAGTTG
Found at i:96518 original size:9 final size:9
Alignment explanation
Indices: 96504--96531 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
96494 GGGGTTCCGG
96504 CTTGGTTTC
1 CTTGGTTTC
96513 CTTGGTTTC
1 CTTGGTTTC
96522 CTTGGTTTC
1 CTTGGTTTC
96531 C
1 C
96532 GGCTTGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.25, G:0.21, T:0.54
Consensus pattern (9 bp):
CTTGGTTTC
Left flanking sequence: Indices 96004 -- 96503
CTAACCCTTTCCGTCTCTACTTTCTTGATCCACCAAATATCATCTTACATCTTTCTAATCAACGC
TTGATCTACTTTACACTAAAATACAAACAAATGCTTTTCACGGGCCACCTCGGCGTCAGAATACT
GCGCCGGACGCACCGTTATCGAGCCAAACAGGTACTGTGGCGATGGTTGGGCAGGCTGGGCCACG
GGCTTCGCAGGCAACAGGGCCGGCGCGGTGCCGTTGGCCCCAAAGAGAGCCGGTTGGGAGTCAGT
CTTGGGCTCAGCACTTTTGAAAGCAGCAGGCTTGGGCTCAGACTCGGGCTTGGGCGCACTCTTCG
ACTCGGCTTTGGCTGACTTGAACTCGAACCCCTTCTTCTCCACTGGCTTAAGTTGGTTTGCGCTC
TCAGTGCACTTCTTGGGCCCGTTCAACCCAAACGTGGGCGCCGCGGTGGGCTGCTTAATCTCCTT
AGCGGTCTGGGAGTTGCCAAAGAGGTTGAATTTCGGGGGTTCCGG
Right flanking sequence: Indices 96532 -- 97031
GGCTTGGTTTCCGGTTTCGAACCAAAGCTGAACCCGGGCCCGTTGGCCTTGGTCTCGTCCGACTT
GCCAAACGTAAACGATTTCGGCTGCGAAACCGGCTCCGACTTCTCCTGGGAGTCCTTGGGCTTCG
CCGGGGTGCTCGTCTCCGGGGTGTCCACCTCCATGCTGGATGCAGGCAACGGGGTGGACTTGTCG
TACGCCAACGTTTTGGTGATGTCCTGGGCTGTCACCTTGCGTTTGGCGCCGCCCGAGGCCGCGTA
GGGGTTCCCGAACTGCGCCAGCTTTGCAGCGGCGCCGTCAGCGGGCTTGTGGCCGTTCTCCTCCT
GGTTTTTCAACACCGCTTCAAGAGCTTGGTAGGTTTTCAGCTTGGGACCGCGTGTGGCGGCCAAA
TGACTCGTGTTGAGCATCACCAGCGTGTTGCCAAACCCATCGAACGTGGTGTTGGCCAGGGTTTG
TCCCGAAACCTGGCCCAGCCCGTTCTGCCGGGTCAATTGCCGTTC
Found at i:96539 original size:12 final size:12
Alignment explanation
Indices: 96498--96545 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 12
96488 ATTTCGGGGG
96498 TTCCGGCTTGGT
1 TTCCGGCTTGGT
96510 TT-C--CTTGGT
1 TTCCGGCTTGGT
96519 TT-C--CTTGGT
1 TTCCGGCTTGGT
96528 TTCCGGCTTGGT
1 TTCCGGCTTGGT
96540 TTCCGG
1 TTCCGG
96546 TTTCGAACCA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 17 0.52
10 1 0.03
11 1 0.03
12 14 0.42
ACGTcount: A:0.00, C:0.25, G:0.29, T:0.46
Consensus pattern (12 bp):
TTCCGGCTTGGT
Left flanking sequence: Indices 95998 -- 96497
AGCAGTCTAACCCTTTCCGTCTCTACTTTCTTGATCCACCAAATATCATCTTACATCTTTCTAAT
CAACGCTTGATCTACTTTACACTAAAATACAAACAAATGCTTTTCACGGGCCACCTCGGCGTCAG
AATACTGCGCCGGACGCACCGTTATCGAGCCAAACAGGTACTGTGGCGATGGTTGGGCAGGCTGG
GCCACGGGCTTCGCAGGCAACAGGGCCGGCGCGGTGCCGTTGGCCCCAAAGAGAGCCGGTTGGGA
GTCAGTCTTGGGCTCAGCACTTTTGAAAGCAGCAGGCTTGGGCTCAGACTCGGGCTTGGGCGCAC
TCTTCGACTCGGCTTTGGCTGACTTGAACTCGAACCCCTTCTTCTCCACTGGCTTAAGTTGGTTT
GCGCTCTCAGTGCACTTCTTGGGCCCGTTCAACCCAAACGTGGGCGCCGCGGTGGGCTGCTTAAT
CTCCTTAGCGGTCTGGGAGTTGCCAAAGAGGTTGAATTTCGGGGG
Right flanking sequence: Indices 96546 -- 97045
TTTCGAACCAAAGCTGAACCCGGGCCCGTTGGCCTTGGTCTCGTCCGACTTGCCAAACGTAAACG
ATTTCGGCTGCGAAACCGGCTCCGACTTCTCCTGGGAGTCCTTGGGCTTCGCCGGGGTGCTCGTC
TCCGGGGTGTCCACCTCCATGCTGGATGCAGGCAACGGGGTGGACTTGTCGTACGCCAACGTTTT
GGTGATGTCCTGGGCTGTCACCTTGCGTTTGGCGCCGCCCGAGGCCGCGTAGGGGTTCCCGAACT
GCGCCAGCTTTGCAGCGGCGCCGTCAGCGGGCTTGTGGCCGTTCTCCTCCTGGTTTTTCAACACC
GCTTCAAGAGCTTGGTAGGTTTTCAGCTTGGGACCGCGTGTGGCGGCCAAATGACTCGTGTTGAG
CATCACCAGCGTGTTGCCAAACCCATCGAACGTGGTGTTGGCCAGGGTTTGTCCCGAAACCTGGC
CCAGCCCGTTCTGCCGGGTCAATTGCCGTTCTTGCAGGCTCCGGT
Found at i:97703 original size:19 final size:19
Alignment explanation
Indices: 97679--97725 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
97669 GGTTGGTAAA
97679 GTTGTGGTGGAGAAGGTTG
1 GTTGTGGTGGAGAAGGTTG
**
97698 GTTGTGGTGGAGGTGGTTG
1 GTTGTGGTGGAGAAGGTTG
*
97717 GGTGTGGTG
1 GTTGTGGTG
97726 ACGCTATGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.00, G:0.57, T:0.34
Consensus pattern (19 bp):
GTTGTGGTGGAGAAGGTTG
Left flanking sequence: Indices 97179 -- 97678
CAGCACGCGCAGGGGGCGACGGGAAAGGATTCGTTGGCGCGGAGTGCCGAGATCGTTCGCCAGAG
AAACCCGGTGTACCCGCTTAGGTGCCTGCTGGGCCACAAGGAGGTCCTCAGCTCGTCGTTTTTTG
GGGGTCTCCTCAAAAGTACCGGGAATCAGCAACTTGCGCTCCGGAGCGGGCTTGTTCTGGGTATG
GGAAAACTGTAAGAACGACGGAAGCGGTTTTACCGGTGCCAGGGTGGTTCTCTGCGTGGGGTTGG
AGGGCTCGTGGCCCGACGGTTCGGGGGAATTTCCCCGGGAAAATATCCGCTTCACCAGCGAAAAG
AGACCGCCGCGCTGGCTGTGCCCTTTGTTTTGGGAAAGCACCCGCCGGTTGTCCATGGGGAGTGT
GGTGGTAACTAGCGAGATAGGCCCAATTTGTTGCTGAGATGAGAGTGCAACGATCGCGCGGCGTG
GAGGAGCCGCGCGTGTGCGGCGGTGTCTGAAAGCGGGTTGGTAAA
Right flanking sequence: Indices 97726 -- 98225
ACGCTATGATGGGTTTTGCTTGGAAGAGTGACCTAGGTGTGTGGCTGCTTTTGAATAGGCGAAAC
ATTTATTGAAGGTGTTTTTCAGAATCGAAATTACAATTGAAGCATGAGAGAAACGAAAGCGAAAG
CCAACATTTTGTGGCTGAGAAAACGAATAACAGAACCGCCGGTCGGGACTTCGATCACGGTAGGA
ATTGGCGCATCAGATTGGGCGCCATGGTCGAAAATAGATTGGGTGGCAGGGTGGGTGGTTCCACT
GTGCGAAGAATTTGCAGCCACGACTGGTGACACCGTGTGGGAGTCGACAGCGGATTGGATGAAAT
CACCTGCGGATTTGGACTCAACGGAGTCAATCAAGCCAACGTAAGAAGTGTAGCTGGGCGATAAC
GAAATCGAAACGCTGTCTACATTCGAAACGGACGCTGGACTCGCGGACCCGAAGCTCTCTTCCAG
TGAGCTAGTAATATTGCCAGCGGAAGACAGCCCCACCGGAAGCTG
Found at i:105763 original size:15 final size:14
Alignment explanation
Indices: 105707--105790 Score: 105
Period size: 15 Copynumber: 5.6 Consensus size: 14
105697 CCAGTCTGTC
105707 CTCACTTCTAGTCT
1 CTCACTTCTAGTCT
105721 CTCACTTCTAGTCCTCT
1 CTCACTTCTAG---TCT
*
105738 CCTCCCTTCTAGTACT
1 -CTCACTTCTAGT-CT
105754 CTCACTTCTAGTACT
1 CTCACTTCTAGT-CT
105769 CTCACTTCTAGTCT
1 CTCACTTCTAGTCT
105783 CTCACTTC
1 CTCACTTC
105791 ATAGCTATGC
Statistics
Matches: 63, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
14 21 0.33
15 27 0.43
16 2 0.03
17 3 0.05
18 10 0.16
ACGTcount: A:0.14, C:0.39, G:0.06, T:0.40
Consensus pattern (14 bp):
CTCACTTCTAGTCT
Left flanking sequence: Indices 105207 -- 105706
GGGCTTGCCTTCGTTGTTGAAGGGTGCTAACATTGCTGGTTTCATCAAGGTGGCCGACGCTATGT
TCGACCAGGGTGAGGTTTTCTAAACTGGTTTTAGTAATGATCCAACGATTTGCTTTTATAGATGT
TAATATGATAGATTTTTGATTTGCGTAATTTGCAGCCACTGCCGTTTTTGGAAAGACCCTGCGCC
GGAAAAACTTTAGCATTCGGTGCATCAATAGCGGTCTGGGGTGACATGGCATTGCAGGGTCACGG
GTGGGGTCATCGTAGCGGAGAGTGAGCTTGTGCTTTGGGTGGGAGTGAAATGCTGGCCCGCTCGG
GATCGCTCACAGTTTGCGGTGGCTTGTTACGAAAAACACCAGCCAGGCCTACCCCATATATATAG
TCGTCCTTATCTTATCAGTACCCATGATCCAGATAAGTTCTGATAACCTAAGCAGAATCAGCCCT
GATAACACAAAATTAGTCGGAGGCAGTCACCCATTCCAGTCTGTC
Right flanking sequence: Indices 105791 -- 106290
ATAGCTATGCATTTCTAATTACTCCTGATACTCGTTTTCAATCTTCTTTCTCAAGTCCGCGTACT
TGGACTTGGCAAACGACGACCCGCCGCCGTCAGCAAGCTTCTCCGAGTACACCAACCGGGCCATG
TTCATGAACTCGGGCTTGGAGAACTTGTGAGGGTTTTCTCTCACCTCCTGGATAAAGCTGTGCTC
GTTGAGCGAGAACAAGTCGTAGTATGCCACCAGCAACGTGAAGTCGGCACCGTCGCCGCCCGCCA
AGTTGCGCAACATCTGCTGGAGAATGTAGATGTTGAGCATCACCCGCTTCACGCCAAACGCCAGG
ATCTTCAGCACCACAAACGACCCCTGGATGAGCACCCGGTTGAGAAAAGTGTCCAACCCACCGTA
CACGTTGAGGCGGTGGCGGTCCGACAACCGCACCGCGAGCTTGTTGTTCAACGTGTAGATGTCCT
TGTTGAGCACCAGCACAAACCGGTCCGCGTCCGCCGGCTCCAGCA
Found at i:105807 original size:29 final size:30
Alignment explanation
Indices: 105709--105790 Score: 87
Period size: 33 Copynumber: 2.7 Consensus size: 30
105699 AGTCTGTCCT
* *
105709 CACTTCTAGT-CTCTCACTTCTAGTCCTCTCCT
1 CACTTCTAGTACTCTCACTTCTAGT--ACT-CG
* *
105741 CCCTTCTAGTACTCTCACTTCTAGTACTCT
1 CACTTCTAGTACTCTCACTTCTAGTACTCG
105771 CACTTCTAGT-CTCTCACTTC
1 CACTTCTAGTACTCTCACTTC
105791 ATAGCTATGC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
29 10 0.22
30 11 0.24
31 2 0.04
32 9 0.20
33 14 0.30
ACGTcount: A:0.15, C:0.39, G:0.06, T:0.40
Consensus pattern (30 bp):
CACTTCTAGTACTCTCACTTCTAGTACTCG
Left flanking sequence: Indices 105209 -- 105708
GCTTGCCTTCGTTGTTGAAGGGTGCTAACATTGCTGGTTTCATCAAGGTGGCCGACGCTATGTTC
GACCAGGGTGAGGTTTTCTAAACTGGTTTTAGTAATGATCCAACGATTTGCTTTTATAGATGTTA
ATATGATAGATTTTTGATTTGCGTAATTTGCAGCCACTGCCGTTTTTGGAAAGACCCTGCGCCGG
AAAAACTTTAGCATTCGGTGCATCAATAGCGGTCTGGGGTGACATGGCATTGCAGGGTCACGGGT
GGGGTCATCGTAGCGGAGAGTGAGCTTGTGCTTTGGGTGGGAGTGAAATGCTGGCCCGCTCGGGA
TCGCTCACAGTTTGCGGTGGCTTGTTACGAAAAACACCAGCCAGGCCTACCCCATATATATAGTC
GTCCTTATCTTATCAGTACCCATGATCCAGATAAGTTCTGATAACCTAAGCAGAATCAGCCCTGA
TAACACAAAATTAGTCGGAGGCAGTCACCCATTCCAGTCTGTCCT
Right flanking sequence: Indices 105791 -- 106290
ATAGCTATGCATTTCTAATTACTCCTGATACTCGTTTTCAATCTTCTTTCTCAAGTCCGCGTACT
TGGACTTGGCAAACGACGACCCGCCGCCGTCAGCAAGCTTCTCCGAGTACACCAACCGGGCCATG
TTCATGAACTCGGGCTTGGAGAACTTGTGAGGGTTTTCTCTCACCTCCTGGATAAAGCTGTGCTC
GTTGAGCGAGAACAAGTCGTAGTATGCCACCAGCAACGTGAAGTCGGCACCGTCGCCGCCCGCCA
AGTTGCGCAACATCTGCTGGAGAATGTAGATGTTGAGCATCACCCGCTTCACGCCAAACGCCAGG
ATCTTCAGCACCACAAACGACCCCTGGATGAGCACCCGGTTGAGAAAAGTGTCCAACCCACCGTA
CACGTTGAGGCGGTGGCGGTCCGACAACCGCACCGCGAGCTTGTTGTTCAACGTGTAGATGTCCT
TGTTGAGCACCAGCACAAACCGGTCCGCGTCCGCCGGCTCCAGCA
Found at i:109451 original size:27 final size:27
Alignment explanation
Indices: 109421--109475 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
109411 CGGGGTACCC
* *
109421 GCTGCCGTAGGGGGTGGGCCCGGAACT
1 GCTGCCGTAAGGGGTGGGCCCCGAACT
109448 GCTGCCGTAAGGGGTGGGCCCCGAACT
1 GCTGCCGTAAGGGGTGGGCCCCGAACT
109475 G
1 G
109476 GACCCGTAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.13, C:0.27, G:0.45, T:0.15
Consensus pattern (27 bp):
GCTGCCGTAAGGGGTGGGCCCCGAACT
Left flanking sequence: Indices 108921 -- 109420
AAGAGCGCCACTGCCATCTCGATGGGGTTGGCCAGATCGTCGAGCATCAGCGGCCAGTCGTACTT
GAGGTTGTTGAAGATCTCCTTGAGATCGTCCATGGGCTCGCCCTGGCCCGTGTACCGCAGCGTGG
CCCGGCCCCTGGGGGTGTAGTTGGTGGTGGCCAGCGACAGCACCCGCGAGTCGAGGCGGGACGCG
TCGCGCGATGCGTGGCGTGACCCGTACGCGTCTGGTTCGGGCTCGTTTAGGTCGTAGGGATCGGG
CTCGTACGCGTCGGATGCGTGGCGTGACCCGTCGCGCTCGGCGCGGTAAGACTCAAACCGCCCGT
TGTCGGAGCCTCGCCCACGCAAGTTGGGGCTGTTGCGCCCAAGCACGGGCGACCCGTAGGGGTTG
CTGGCACTGACGCCACGCGAGCCCGGGCGCGACAAGCTCAGGTAGCTCTCGTGCAGCCGGTTGCT
GATGCGCGAGCGGTGGGTGGCGCCACTGTCGCGGGCGGGGTACCC
Right flanking sequence: Indices 109476 -- 109975
GACCCGTAGGGAGACGGTCCGGAACTGCCATACGACGAGGGGCCCGAGGTGCTCCCGTAGGGGTT
GGGGCCTGATCCAGCGCGCCCGTAGCTGGTACGCGCGCGGGGATCGTCGTCGGGCTCGCGGGGCG
ACTCGCGCGAGTTGGGGGTCCCGTCTCGGGAATATGTCCCGTGGCTGCGCCCGCCGGCGCGCGAA
CCGGTGCCGTACTGCGACGGTGCCGCGTAGGGGTTGTCTGCGGGCGGGTTTTGGGTACTGGAGCC
ATTGGTGGAGGCGCCAAACGAGCGCTGGCTCCGCAGGGATCTCATGGGTGTGGTGGTGGTGGGTG
ATCCCGGTGAATTTTGCGGGTGGTAGTCGTGTTGATTTTCGCGCGTGCGGCTGGGTGGAGGAAGG
ACGAGGATGGTGGGATGGGTGGATGGACTGATGAAGGGGGTCTGTGGGGTGGTGTGTAGGGTGTC
AATTGGGTGGGGAGGGGGTATGTGTGTTGTCTTTAGGTTGACCGG
Found at i:109482 original size:27 final size:27
Alignment explanation
Indices: 109425--109483 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
109415 GTACCCGCTG
* * **
109425 CCGTAGGGGGTGGGCCCGGAACTGCTG
1 CCGTAAGGGGTGGGCCCCGAACTGCAC
*
109452 CCGTAAGGGGTGGGCCCCGAACTGGAC
1 CCGTAAGGGGTGGGCCCCGAACTGCAC
109479 CCGTA
1 CCGTA
109484 GGGAGACGGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.29, G:0.42, T:0.14
Consensus pattern (27 bp):
CCGTAAGGGGTGGGCCCCGAACTGCAC
Left flanking sequence: Indices 108925 -- 109424
GCGCCACTGCCATCTCGATGGGGTTGGCCAGATCGTCGAGCATCAGCGGCCAGTCGTACTTGAGG
TTGTTGAAGATCTCCTTGAGATCGTCCATGGGCTCGCCCTGGCCCGTGTACCGCAGCGTGGCCCG
GCCCCTGGGGGTGTAGTTGGTGGTGGCCAGCGACAGCACCCGCGAGTCGAGGCGGGACGCGTCGC
GCGATGCGTGGCGTGACCCGTACGCGTCTGGTTCGGGCTCGTTTAGGTCGTAGGGATCGGGCTCG
TACGCGTCGGATGCGTGGCGTGACCCGTCGCGCTCGGCGCGGTAAGACTCAAACCGCCCGTTGTC
GGAGCCTCGCCCACGCAAGTTGGGGCTGTTGCGCCCAAGCACGGGCGACCCGTAGGGGTTGCTGG
CACTGACGCCACGCGAGCCCGGGCGCGACAAGCTCAGGTAGCTCTCGTGCAGCCGGTTGCTGATG
CGCGAGCGGTGGGTGGCGCCACTGTCGCGGGCGGGGTACCCGCTG
Right flanking sequence: Indices 109484 -- 109983
GGGAGACGGTCCGGAACTGCCATACGACGAGGGGCCCGAGGTGCTCCCGTAGGGGTTGGGGCCTG
ATCCAGCGCGCCCGTAGCTGGTACGCGCGCGGGGATCGTCGTCGGGCTCGCGGGGCGACTCGCGC
GAGTTGGGGGTCCCGTCTCGGGAATATGTCCCGTGGCTGCGCCCGCCGGCGCGCGAACCGGTGCC
GTACTGCGACGGTGCCGCGTAGGGGTTGTCTGCGGGCGGGTTTTGGGTACTGGAGCCATTGGTGG
AGGCGCCAAACGAGCGCTGGCTCCGCAGGGATCTCATGGGTGTGGTGGTGGTGGGTGATCCCGGT
GAATTTTGCGGGTGGTAGTCGTGTTGATTTTCGCGCGTGCGGCTGGGTGGAGGAAGGACGAGGAT
GGTGGGATGGGTGGATGGACTGATGAAGGGGGTCTGTGGGGTGGTGTGTAGGGTGTCAATTGGGT
GGGGAGGGGGTATGTGTGTTGTCTTTAGGTTGACCGGTGTGGTTT
Found at i:122258 original size:21 final size:21
Alignment explanation
Indices: 122234--122311 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
122224 CAGTAGCCTG
*
122234 GTGGTGCTCTTCAAGTGACTC
1 GTGGTGCTCTTCAGGTGACTC
* *
122255 GTGGGGCTCGTCAGGTG-CTTC
1 GTGGTGCTCTTCAGGTGAC-TC
*
122276 GTTGTGCTCTTCAGGT-ACTCC
1 GTGGTGCTCTTCAGGTGACT-C
* *
122297 GTGATGCTCCTCAGG
1 GTGGTGCTCTTCAGG
122312 AGCGTGCTGT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 2 0.04
21 43 0.96
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (21 bp):
GTGGTGCTCTTCAGGTGACTC
Left flanking sequence: Indices 121734 -- 122233
GGGTAAGCTCGTGGATGTCGAGAGACCTTAAAGCGCTGAATAGATTAATGGGAATAATGAAATGA
CAGATATCAGGAACTTACATGCGTAATGACGGTAATACTTTACATTGAATAATGTCCATTATGTA
GTCGATTGAACTTGAAACCGTACTAAAGCTCATCGTGAGGGGCATCTTGGGGCTGCTCGTGAGCT
GTTTGTTGCGCTTCCCCGTGCTCCTGTTGCTGCTCCAAGGACTCGACAGCTTCGTGTAGAGCTTC
TTGATCCACAACCGGCTTTTCCTCAGGCTCAGCGTGTGGTGGGTCGACGGGGGGAGCTTCGTGCT
CAACGGAGGGCTCGGGAATTTGCTCAGGGGCCGGTTCGTGAACGTCATTGTAAGAATTCTCCTCG
TTAATCGAAGAAACCGCACCCTGGGCCTCCCGGATACCCTCAGCATCGTTTTCCGCTTCTTGGTG
GTCGATGTGCATTTCAGGTGCATCATGGTGGGCTTCAGTAGCCTG
Right flanking sequence: Indices 122312 -- 122811
AGCGTGCTGTTGCTCAGGTGCTTCATGTGATTTATACTCAGCCTCAACTGCCTGAACATCCTGGG
TTGCTTCTGGCTCGTCAACGGGCTCAGCAAGCTCTTCTTCCGCATAATTATACTCACCATCCGCA
GCCTGGGCGTCATCAGAAGCTTCTTCCACCGCCGGGGTGGCTTGAGCCTCTTCAGGGGCCTCATG
AACCATCTCCTCTTCGCGCACCTCAGAAGGCTCACCGATAGGCTGGTTCTCCTCGTGCTCTTGCG
CCTCATCCAGAGGCCACACCACCTCGATTGTCGCTGGATCTTCTTCCACTTCCTCGATCTGGCTC
AGATCCATCATCGACAGTGCTATCACAGAGGCAGCCACTACAGTGGACATCAAGGCTTCGGTCAC
CAAATCCACCGAGGGCGTAGCCTCGGCCAATGCCTCCGACGCAGCCTGTGACATGTCTCCCACAA
CCTCCTTGGCACCCTTGGAGCCCCCAAACATCCACGTAAACACTC
Found at i:126243 original size:7 final size:7
Alignment explanation
Indices: 126222--126265 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
126212 GTACTCGGAG
126222 CACCAGC
1 CACCAGC
126229 CA-CAGC
1 CACCAGC
126235 CACCAGC
1 CACCAGC
126242 CACCAGC
1 CACCAGC
*
126249 CACCAAC
1 CACCAGC
*
126256 CACCATC
1 CACCAGC
126263 CAC
1 CAC
126266 TCAAACACAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 6 0.18
7 28 0.82
ACGTcount: A:0.32, C:0.57, G:0.09, T:0.02
Consensus pattern (7 bp):
CACCAGC
Left flanking sequence: Indices 125722 -- 126221
AATTTACAGAAATAAGAAGAGTAGGTCTAAAAACATACGAACAACCCATTGCGCTTTGGGCTGTA
GCGTACCTACTAATAACGCTGAATCTGGGGGGCATTCTCAACTACCTATCCTCATTTTTCGAGAT
ACAGGCGGATCCTAGGCAGATCGCGCATTCCGAGGCGCGTCATGCAGCGTCTACACTTTGAGTCT
AAATTAACCACGCTACAGACAGAGCGCAGGGCAAGTAAGCATGTATACCAGTGTTTGATACAATT
AGCTATCCATACAAACTTCCCCGGGCTCAATTGCTCGTAAATTACCGATCGGCACCCATTGTTTG
GGTGCCGAAATCTAGTTGGCATGCCGATAATATCGTTCCCCGCTCTCCTGTCTACAAAGCGTTAC
CCGCCCCATAGCCCAGCCGCTGAGATATAAATATGGGTGCTCCCCCCAGATTTTGATTTTTTTTA
TCTACAACTTCCTCAGCCTCCACCATCCGGAGTAAGTACTCGGAG
Right flanking sequence: Indices 126266 -- 126369
TCAAACACAGCCTACTACTAACAGACACTAGCCACCCCGGTCACTGGACCTCTATGCTACTGTGA
TGGTAGCATTGAGCCACCCGGGGTACCCCAGCCATGGCG
Done.