Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold34
Parameters: 2 7 7 80 10 50 500
Length:  74107

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5257--5286
14
2.1
15
93
6
53
13
10
56
20
1.65
9520--9555
18
2.0
18
88
0
54
8
0
61
30
1.26
9615--9667
12
4.4
12
80
4
63
26
7
56
9
1.57
19621--19679
13
4.4
13
89
6
82
6
25
30
37
1.82
19605--19683
14
5.8
14
88
5
101
8
24
27
39
1.85
25393--25428
13
2.8
13
95
0
63
11
44
16
27
1.82
38498--38540
18
2.2
20
88
8
63
27
4
58
9
1.49
38701--38729
11
2.7
11
94
5
51
34
0
58
6
1.25
39626--39699
16
4.7
16
91
3
123
17
6
44
31
1.75
39626--39695
31
2.2
31
92
2
113
17
7
42
32
1.76
40873--40926
20
2.9
17
86
8
54
3
1
59
35
1.26
43522--43555
17
2.0
17
94
0
59
11
14
11
61
1.56
43891--43948
24
2.4
24
94
0
98
31
55
1
12
1.47
43949--44007
11
5.2
11
78
15
57
18
50
1
28
1.56
43967--44018
25
2.1
24
89
3
77
17
50
0
32
1.47
46525--46610
14
5.8
15
76
14
81
8
0
58
33
1.28
46537--46620
9
9.7
9
80
14
56
8
0
58
33
1.28
46548--46623
21
3.6
21
78
13
68
9
0
56
34
1.31
46525--46599
7
11.4
7
85
8
70
8
0
58
33
1.27
53037--53234
55
3.6
56
89
4
307
39
10
40
9
1.71
53037--53234
28
7.2
28
90
3
298
39
10
40
9
1.71
55345--55377
9
3.6
9
95
4
57
45
51
0
3
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56190--56218
10
3.0
10
95
5
51
10
0
48
41
1.37
56197--56236
12
3.5
12
90
6
57
5
0
45
50
1.23
56207--56249
12
3.6
12
90
0
59
4
0
46
48
1.22
56265--56328
21
3.0
21
93
0
101
26
3
40
29
1.71
59053--59151
21
4.6
22
93
2
157
24
6
39
30
1.79
59060--59143
43
2.0
43
95
2
152
23
7
39
29
1.81
59420--59483
17
3.8
17
76
0
65
10
26
17
45
1.81
59420--59529
34
3.3
33
79
8
100
11
28
15
44
1.82
59440--59537
31
3.1
30
76
10
88
12
30
14
42
1.82
63422--63448
11
2.5
11
100
0
54
7
11
55
25
1.61
66109--66207
34
3.1
32
78
16
116
23
3
45
28
1.67
66125--66207
28
2.7
31
83
12
109
22
3
45
27
1.69
66631--66656
13
2.0
13
100
0
52
7
53
15
23
1.67
67371--67418
14
3.4
14
91
0
78
14
14
35
35
1.87
69249--69469
36
6.3
36
83
6
274
33
23
14
28
1.94
69258--69430
71
2.5
67
89
3
229
36
22
13
27
1.92

Tables:   1

The End!