Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold34
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 74107
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Found at i:5274 original size:14 final size:15
Alignment explanation
Indices: 5257--5286 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
5247 GTGGTGGAGA
5257 GGTGGTTA-CGAGGG
1 GGTGGTTACCGAGGG
5271 GGTGGTTACCGAGGG
1 GGTGGTTACCGAGGG
5286 G
1 G
5287 TGGGGGTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.13, C:0.10, G:0.57, T:0.20
Consensus pattern (15 bp):
GGTGGTTACCGAGGG
Left flanking sequence: Indices 4757 -- 5256
GGTGGGAGCAGGCCGGGTTCTCGTGCAAACGGGGTGAGTTGCAAGTGTGGTTTTTTTTGATGCTG
GGTGTGTATGAGTGTCGTGCTTCGCCGATGCCTAATCAAAACAACGCGAACGCGCTTGTTTTTTA
CCAGACGAGTTGCGACGCGGGCGGGACTACAGCAGAGCGAAAAAAGAGCTGGCACCCGGGAAAGG
CGCGGTATTTATGTTGGCCGTGGCGAAAAAAGCTCTGGGAAATGAATGACCTCGACGGGAGGGTT
TTGGGAGGAGGGTGGTGGTTTTGTCTGGTTATAAGCCCGGATAGGTTACAATATGCGCAATCGCC
AAAGGTACGGTGGTGGCGCTCGTGACTGGGTGAAATTGGCGATCCATTGTTGCAGGCGATGTATC
GGGAGCGACGTAGCCCGGGGCTGTCGCTGGCGCCCCCCGACGCGTGGGGATGCACGTAGGCGGCT
GGCTGTAGGTAATTACGCGTGGTGTGGGTGGGGTGGTGGTGGAGA
Right flanking sequence: Indices 5287 -- 5786
TGGGGGTGCTGGGTCAGGTGGGGGTGTCAATACGAGAGCAATGATAATATGCCTGGTGCGGGGTT
GTCGGGGCTACCTTTGTTTTGATTGCGGACGGGTGAAATTTGATCGCCGTTAGGTTACATGCATG
TAAATCGCGTGGCTGCAGGGTGGACGACGAGACGTGGAGCCACTCCTTACATAAATGACAGACGT
GTCGGTTTTGGCATCACGGTTGTAGAGAGGCGGTGGTGATGAGGTGGCTTTGGCACGGTCACACT
ACCGTTCGGGGGGGCGTTGGAGAGCGCAATTGGTACAAAACTCTAAATGGCGATTTCGTGCTTTG
GCTGCAAAATTTTGTGAAAAGGTGGAAAGAGTGGGGAATGTGAGGAAAATGCAGATAGGGGAGGA
ATGGGGTGAAAGGTAAGCGGAGGAGCCGTAGCGAACGGAACAGGGACAGTTCGGGGGAGAAATCA
GTAGGAGTCGTGAGCGATCGGGGTACTGTACAGAGAACCTTCGCT
Found at i:9543 original size:18 final size:18
Alignment explanation
Indices: 9520--9555 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
9510 GTGGTGTGCG
* *
9520 GTGGGTGTTGAGTGGGGT
1 GTGGGTGGTGAATGGGGT
9538 GTGGGTGGTGAATGGGGT
1 GTGGGTGGTGAATGGGGT
9556 AACCAGCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.61, T:0.31
Consensus pattern (18 bp):
GTGGGTGGTGAATGGGGT
Left flanking sequence: Indices 9020 -- 9519
ATACTTTTCAAACATTTTGTTAAGGCCCCGCAGCGTCAAGATGTACCGGGCGTGGATGAGCCCGT
AGAGCATGCGGGCGTTCTGCTCCAACTGCTCGCGGATTTCTTGCGGGTGCAGCTCGATGTCGACA
ATGTCGGTGATGATGTCGATCAACGCTGGTAGCCGCAGCACCTCCTGGTTCAACCCGGTCAAGTT
GAAGCGGTCGCGGATGTACTCGTCATCGATGTCGCAGAAGTACTCGTTGCCCTTGATGCCCAAGA
ACAAGTCGATCCAGTACTCAGTGAATTCCGACAGGGTGTCGGCCACGTATTCGTCTCCCATGTTG
TGGGAAGGTTGGGGTCGGAGGGTGTGTCGCGAAGATGAGGATCGAAGTTTTTCGTGAGAGGGTGA
AAAGTGGGAAGACCACGGTGGTGTGGCGGGAGTGGGGAGAGCGGTGGTGGGGGTAGAGGGGGTAG
TAGAGGTAGTACGGGTAGTAGTTGGGGTTGTGTTAGTGGTGTGCG
Right flanking sequence: Indices 9556 -- 10055
AACCAGCAATGGTGAGAAAAGAGTGTAAGCGAGTGGTGGGAGGGAAGGTGAAGGAAAAAGAGAGC
GAGGGGTGAGTGATAGGGAGAGCGATGGGGAGAGCGATGGGGCAGAGTGGATGGTGGTAAGGAAG
ACATACTCATGTAATCATAAGAGCTTCAGGTAGGATTTGAACTTAGCAATGGTACCCGGTTGTGG
AACTCCGAGGGCCACAACGGAACACCGAACACGGAAAAGATTATTGACCCGAAGTGAGAGCTAGT
GGTATATTGTCTACCATCACCAGCGGGATTATAATCCACTCGTCTATAGCTGATGACCCGAGGCA
ACTAAAGACTGTGATAGCTTACTGACCCTGGTCGTAAAGGGTTCAATTGGGTCACTTCACTACTA
CTTGATATTCTGCTACCAGGCTTCATTACTTCTTTCTTTTCTCTACAGTTGTAACCATTACTTCC
GCATAATCACGGTCAACCACCAGCCACAGCCACCTAGAGGACGTT
Found at i:9653 original size:12 final size:12
Alignment explanation
Indices: 9615--9667 Score: 63
Period size: 12 Copynumber: 4.4 Consensus size: 12
9605 GAAGGAAAAA
9615 GAGAGCGA-GGG
1 GAGAGCGATGGG
* * *
9626 GTGAGTGATAGG
1 GAGAGCGATGGG
9638 GAGAGCGATGGG
1 GAGAGCGATGGG
9650 GAGAGCGATGGG
1 GAGAGCGATGGG
9662 GCAGAG
1 G-AGAG
9668 TGGATGGTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
11 6 0.18
12 24 0.71
13 4 0.12
ACGTcount: A:0.26, C:0.08, G:0.57, T:0.09
Consensus pattern (12 bp):
GAGAGCGATGGG
Left flanking sequence: Indices 9115 -- 9614
CGCGGATTTCTTGCGGGTGCAGCTCGATGTCGACAATGTCGGTGATGATGTCGATCAACGCTGGT
AGCCGCAGCACCTCCTGGTTCAACCCGGTCAAGTTGAAGCGGTCGCGGATGTACTCGTCATCGAT
GTCGCAGAAGTACTCGTTGCCCTTGATGCCCAAGAACAAGTCGATCCAGTACTCAGTGAATTCCG
ACAGGGTGTCGGCCACGTATTCGTCTCCCATGTTGTGGGAAGGTTGGGGTCGGAGGGTGTGTCGC
GAAGATGAGGATCGAAGTTTTTCGTGAGAGGGTGAAAAGTGGGAAGACCACGGTGGTGTGGCGGG
AGTGGGGAGAGCGGTGGTGGGGGTAGAGGGGGTAGTAGAGGTAGTACGGGTAGTAGTTGGGGTTG
TGTTAGTGGTGTGCGGTGGGTGTTGAGTGGGGTGTGGGTGGTGAATGGGGTAACCAGCAATGGTG
AGAAAAGAGTGTAAGCGAGTGGTGGGAGGGAAGGTGAAGGAAAAA
Right flanking sequence: Indices 9668 -- 10167
TGGATGGTGGTAAGGAAGACATACTCATGTAATCATAAGAGCTTCAGGTAGGATTTGAACTTAGC
AATGGTACCCGGTTGTGGAACTCCGAGGGCCACAACGGAACACCGAACACGGAAAAGATTATTGA
CCCGAAGTGAGAGCTAGTGGTATATTGTCTACCATCACCAGCGGGATTATAATCCACTCGTCTAT
AGCTGATGACCCGAGGCAACTAAAGACTGTGATAGCTTACTGACCCTGGTCGTAAAGGGTTCAAT
TGGGTCACTTCACTACTACTTGATATTCTGCTACCAGGCTTCATTACTTCTTTCTTTTCTCTACA
GTTGTAACCATTACTTCCGCATAATCACGGTCAACCACCAGCCACAGCCACCTAGAGGACGTTAG
ACAGCACCCAAACAAAGACAACTCAGGCCGCAAAACTCACCAGTGACCCCAATTGAGCAGCCAAT
CAGCAATATTTCACCGGAAACCACACTCAACCCCACCAAACCTCA
Found at i:19644 original size:13 final size:13
Alignment explanation
Indices: 19621--19679 Score: 82
Period size: 13 Copynumber: 4.4 Consensus size: 13
19611 TTCAATGCTT
19621 GTCGTTCATCGCTG
1 GTCG-TCATCGCTG
19635 GTCGTCATCGCTG
1 GTCGTCATCGCTG
19648 GTCGTCATCGCTG
1 GTCGTCATCGCTG
* *
19661 GTCGTTCATTGTTG
1 GTCG-TCATCGCTG
19675 GTCGT
1 GTCGT
19680 TCATTGCTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
13 27 0.64
14 15 0.36
ACGTcount: A:0.07, C:0.25, G:0.31, T:0.37
Consensus pattern (13 bp):
GTCGTCATCGCTG
Left flanking sequence: Indices 19121 -- 19620
CCCAGAGGCCCCAAAGTGCGGTTGGTGCTGGTGCTGGACGACAAGACGGCGCGGATCTGGCGGGC
CGTGGACGAGCCCACCGAGGAAAACGACCGGACAGAGCTGATCCCGAGCTCGATCCGCCGGCTGG
CCGACATGGAGTGGCGCGAGGAGGCGACGTTGCCCGCAGTGCACAAGTACCCGATCTACCTGGTG
AGCTGGTCGCGGGTGCTGGGACGGATCGCCACCACCGGGTGTGACGGCACCGTGGCCGTGTACCG
CGAAACCGACGACGGGTGGGTGGTGGAGGCCACCCAGGAGTACGCGCATGGGGTGTACGAGGTGA
ACAGCGTGGTGTTTGCCCAGTTGGCCGAGGACGACGCCGAGGTGCTTGTGACCGGAGGCGACGAC
GGGTGTGTCAACGTGTGGACGCTTGCGTGAGCGGTTGAAGCGAGTTCATTGCGCTTGTCCGTTAC
TCATCGTTCATTGTGTATTATTTATTGCATGGTCGTTCAATGCTT
Right flanking sequence: Indices 19680 -- 20179
TCATTGCTATATCGTTATTCGTTACGGGGTTGCCTGTGAGTCTGGTATGGTTGCCCCAGTTTGGT
CTATCTATGGGTTCATAGGTTCAGCCAGTTACCTTCCTTTGTCTTTTGGTGTCCATGTACCCCCA
CATTGACTTCTTTCACCATCTTCATCACTGACTTCACCAATCACTCTCTCCACTTTCTTATATCA
TCAACACTAATATAATCAACCCGAGAAGAATCAAAAGAATGCCTAGACAGTAGCACATCACCCCG
CCCGAGCGTCGCTGGTACCGCTCTGCTCGCCTGAGCTCGGTGTGCGCGCCCCGCACGTCGGTGGA
GTAGTTGAACAAGTTCTCCTCGATGTTGTCCACCTGGTACTGCTGCTGGTTGACTATCGACGACA
AGTTCTCAAAGATCTCGTTGATCTCAAGCGTGTCCTGGTGGATGCGGTGGATCTCCTGCTCGCGC
TGCTCGATCGCAAGCGACTGTTGCTCCAACTCCTCGGCGTTGATG
Found at i:19685 original size:14 final size:14
Alignment explanation
Indices: 19605--19683 Score: 101
Period size: 14 Copynumber: 5.8 Consensus size: 14
19595 ATTTATTGCA
19605 TGGTCGTTCAAT-GC
1 TGGTCGTTC-ATCGC
*
19619 TTGTCGTTCATCGC
1 TGGTCGTTCATCGC
19633 TGGTCG-TCATCGC
1 TGGTCGTTCATCGC
19646 TGGTCG-TCATCGC
1 TGGTCGTTCATCGC
* *
19659 TGGTCGTTCATTGT
1 TGGTCGTTCATCGC
19673 TGGTCGTTCAT
1 TGGTCGTTCAT
19684 TGCTATATCG
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
13 28 0.47
14 31 0.53
ACGTcount: A:0.09, C:0.24, G:0.28, T:0.39
Consensus pattern (14 bp):
TGGTCGTTCATCGC
Left flanking sequence: Indices 19105 -- 19604
GTGTCTGAAGTTTGACCCCAGAGGCCCCAAAGTGCGGTTGGTGCTGGTGCTGGACGACAAGACGG
CGCGGATCTGGCGGGCCGTGGACGAGCCCACCGAGGAAAACGACCGGACAGAGCTGATCCCGAGC
TCGATCCGCCGGCTGGCCGACATGGAGTGGCGCGAGGAGGCGACGTTGCCCGCAGTGCACAAGTA
CCCGATCTACCTGGTGAGCTGGTCGCGGGTGCTGGGACGGATCGCCACCACCGGGTGTGACGGCA
CCGTGGCCGTGTACCGCGAAACCGACGACGGGTGGGTGGTGGAGGCCACCCAGGAGTACGCGCAT
GGGGTGTACGAGGTGAACAGCGTGGTGTTTGCCCAGTTGGCCGAGGACGACGCCGAGGTGCTTGT
GACCGGAGGCGACGACGGGTGTGTCAACGTGTGGACGCTTGCGTGAGCGGTTGAAGCGAGTTCAT
TGCGCTTGTCCGTTACTCATCGTTCATTGTGTATTATTTATTGCA
Right flanking sequence: Indices 19684 -- 20183
TGCTATATCGTTATTCGTTACGGGGTTGCCTGTGAGTCTGGTATGGTTGCCCCAGTTTGGTCTAT
CTATGGGTTCATAGGTTCAGCCAGTTACCTTCCTTTGTCTTTTGGTGTCCATGTACCCCCACATT
GACTTCTTTCACCATCTTCATCACTGACTTCACCAATCACTCTCTCCACTTTCTTATATCATCAA
CACTAATATAATCAACCCGAGAAGAATCAAAAGAATGCCTAGACAGTAGCACATCACCCCGCCCG
AGCGTCGCTGGTACCGCTCTGCTCGCCTGAGCTCGGTGTGCGCGCCCCGCACGTCGGTGGAGTAG
TTGAACAAGTTCTCCTCGATGTTGTCCACCTGGTACTGCTGCTGGTTGACTATCGACGACAAGTT
CTCAAAGATCTCGTTGATCTCAAGCGTGTCCTGGTGGATGCGGTGGATCTCCTGCTCGCGCTGCT
CGATCGCAAGCGACTGTTGCTCCAACTCCTCGGCGTTGATGGGCT
Found at i:25411 original size:13 final size:13
Alignment explanation
Indices: 25393--25428 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
25383 GGCTAGCTAT
25393 CGTCTCTGACCAC
1 CGTCTCTGACCAC
*
25406 CGTCTCTGACCTC
1 CGTCTCTGACCAC
25419 CGTCTCTGAC
1 CGTCTCTGAC
25429 ACTATCTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.44, G:0.17, T:0.28
Consensus pattern (13 bp):
CGTCTCTGACCAC
Left flanking sequence: Indices 24893 -- 25392
AGCTGTTGTTGTTCAAGCTGGACTACTTCTCGACTGTCCCTCCGCAGTGGCTCCAGTGGTTGCGG
CGCACCCGGTACCCAGCACCCACTCTCGAGGAGTTGACCGCGGACGAGATGCGCCAGCAGAAGAT
CAAGGTGTTGGCTGCGCAGGCAGAGCTGAAGTGGTACGCGGAGAAGGAGCGGTTGGAGCAGGAGC
ACCGGGCCAAATTGCAGCACGAGCTCCAGCGGGCACGGGATGAGCAGCAGGCCTACCTCAAGGAG
TACGAGGAGCAGGCGAAGGCCGAGGACCCGTGGAAGCAGGCCGACGAGTCGAAGGACAAGAACCC
GATTGAGAGTGCCAAGTTCACCCCCCGGAGATAGCGAAGAAGATGACTGTATATATTAGCCGTTG
GCACACGAACAGTAGTAGGAATACACGACTGTAATGCAATGGGTGGCGTAGATTGGCTGGTGTGT
GTTGTACGCGGGTTTTGTATGATTGCTGTGTTATTGGCTAGCTAT
Right flanking sequence: Indices 25429 -- 25928
ACTATCTGACACTACCTGACACTCTGTTCAGTTCTCAGGTTCCAAAGCGTAGTACTTGACATCTT
GTTAGCTACAACCGCTTGGTAAAACTATGTCTTACCTAGTTAATGTGTATCTTCACCTATCTTCT
ACTCAGCTACTCAACTCCCTCTATCCTCACCCCCTTCCCACCCCTGTGCTCCCGGTTATGATCCA
TGATTGTAGATGTGCGACTCATCTCATGGCCGTGATAGACCTCTCCCTCGCCGAAACCAACCGGC
TACGGGCCAAGCTCGGGCTCAAGCTTATCCCGGAGCCCACCAACGAGCGCCCGAAACCACCCCCG
CGACCGTCTTTTGCCCAAACCCCGCGCGAGCCCGAGCCCGCGGTGGACCTCAACCAGTTCGTCCA
GCAACGGGTCCAACAGAGCAAGGATGCGCTCAACAGAAGCAAAAACACACTGAAGCACACCAGTG
ACGACGACTGGCTTGCGAATTTGGGCCAGCCCACCGCCAAACGGG
Found at i:38535 original size:18 final size:20
Alignment explanation
Indices: 38498--38540 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
38488 GGGAGACGGA
38498 GGGTGGACAGGAAGGGAAAG
1 GGGTGGACAGGAAGGGAAAG
*
38518 GGGTGGAC-GGTA-GGAAAG
1 GGGTGGACAGGAAGGGAAAG
38536 GGGTG
1 GGGTG
38541 CGAGGGGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.50
19 3 0.14
20 8 0.36
ACGTcount: A:0.28, C:0.05, G:0.58, T:0.09
Consensus pattern (20 bp):
GGGTGGACAGGAAGGGAAAG
Left flanking sequence: Indices 37998 -- 38497
TGGGCACGGTGTCGAGCAGGGACAGGAACCGGCCAATGATGTCTTCCATCGCGTTTTGCCAGCTC
AAGTGCTGGAGTGCGAGCTGGGCGAGGGCTATGCAGAGCTGGGTCCGCACAAGGCGGGTGCTGGC
GGTGTTGTAGACCTCCAACAACTCGAAAAGCGACTGTTTGAGCTTGTCGTAGTCCAGGGCGGGCA
CCTGGTTCAAGTCGTAGGTCATTTTCATCCGCAACGTCTGGGCAGCAAACATCTTGGCCTGGAGG
TCGCCCTGGGCCTTGTCTGCCAACATCGCGTGGGCCACTTCCCACGCCTCCGGCAGCTTCTGGAA
CTGGTGGAGAAAGGTGTTGGCCGCCGCCTTCTCCGCCTGCGGGGCCGCCAGATACATGGTGGTCA
ACGCCTGTTTTAGTTGGTCCATGATGCGGCTGGCTGGAGGGAGGGATGGATGGTTAGATGGACCG
GCTGGTGGATCGCAGCCGAAATATTAATCACGTGAGGGAGACGGA
Right flanking sequence: Indices 38541 -- 39040
CGAGGGGGTGGGTGGGGACGGTGGGTGGGTTTATGTGGGTATGAGTGGTCCGTTTGACCGGTTCG
TCCTGGTTTTCGTGGATTTTTCAGTGGGCTATTGTCATTTTGGCTGGGTAGTAGAGTGGTGGAGA
TGGTGGGGAACGCGTCGTATTTATAGTCTAGGAGGAGATGGGAGGAGAATGGGAGGAGAGGAGGG
AACTGCTACCTGATTGGGTTGTTGACCATCACCAAGGCACCACACACGGGGCCACAGTGGTACAA
GTGTCAACCTCGAAAGAAGTGAAAAATTCAAAAAAGACCACAACCAAACAAAAGCTAGACCCAGA
ACACTAAACCAAACCAAAAACTACACCACACCATCTGTCACCACCCGCTACCCGGCCCGATCAGC
TGTCCCCACCAACGCGTCCGCGTGGTCGCTGCCACGTCTGCGTCTGCGCGCGAAAACATCTACAG
CCATCACCTCCACCACACCATGCGTCCGATTGTTATTTCTGGCCC
Found at i:38724 original size:11 final size:11
Alignment explanation
Indices: 38701--38729 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
38691 TTATAGTCTA
38701 GGAGGAG-ATG
1 GGAGGAGAATG
38711 GGAGGAGAATG
1 GGAGGAGAATG
38722 GGAGGAGA
1 GGAGGAGA
38730 GGAGGGAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.34, C:0.00, G:0.59, T:0.07
Consensus pattern (11 bp):
GGAGGAGAATG
Left flanking sequence: Indices 38201 -- 38700
AAGTCGTAGGTCATTTTCATCCGCAACGTCTGGGCAGCAAACATCTTGGCCTGGAGGTCGCCCTG
GGCCTTGTCTGCCAACATCGCGTGGGCCACTTCCCACGCCTCCGGCAGCTTCTGGAACTGGTGGA
GAAAGGTGTTGGCCGCCGCCTTCTCCGCCTGCGGGGCCGCCAGATACATGGTGGTCAACGCCTGT
TTTAGTTGGTCCATGATGCGGCTGGCTGGAGGGAGGGATGGATGGTTAGATGGACCGGCTGGTGG
ATCGCAGCCGAAATATTAATCACGTGAGGGAGACGGAGGGTGGACAGGAAGGGAAAGGGGTGGAC
GGTAGGAAAGGGGTGCGAGGGGGTGGGTGGGGACGGTGGGTGGGTTTATGTGGGTATGAGTGGTC
CGTTTGACCGGTTCGTCCTGGTTTTCGTGGATTTTTCAGTGGGCTATTGTCATTTTGGCTGGGTA
GTAGAGTGGTGGAGATGGTGGGGAACGCGTCGTATTTATAGTCTA
Right flanking sequence: Indices 38730 -- 39229
GGAGGGAACTGCTACCTGATTGGGTTGTTGACCATCACCAAGGCACCACACACGGGGCCACAGTG
GTACAAGTGTCAACCTCGAAAGAAGTGAAAAATTCAAAAAAGACCACAACCAAACAAAAGCTAGA
CCCAGAACACTAAACCAAACCAAAAACTACACCACACCATCTGTCACCACCCGCTACCCGGCCCG
ATCAGCTGTCCCCACCAACGCGTCCGCGTGGTCGCTGCCACGTCTGCGTCTGCGCGCGAAAACAT
CTACAGCCATCACCTCCACCACACCATGCGTCCGATTGTTATTTCTGGCCCCTCGGGCACCGGCA
AGTCCACCCTTCTCAAGCGGTTGTTTGCCGAGTACCCCGACCGTTTTGGTTTCCTGGTGTCCAAC
ACCACCCGCAAGCCGCGTGACGGCGAGGTCAACGGGAAGGACTACAACTTCACCGAGGTTGACGC
GTTCAAGAAGATGATCGACAACAAGGAGTTCATCGAGTGGGCCCA
Found at i:39645 original size:16 final size:16
Alignment explanation
Indices: 39626--39699 Score: 123
Period size: 16 Copynumber: 4.7 Consensus size: 16
39616 AGTGAGTTAG
39626 TGGTGTAAGGGTATGC
1 TGGTGTAAGGGTATGC
39642 TGGTGTAAGGGTATGC
1 TGGTGTAAGGGTATGC
*
39658 TGGTGT-AGGATATGC
1 TGGTGTAAGGGTATGC
*
39673 TGGTGTCAGGGTATGC
1 TGGTGTAAGGGTATGC
39689 TGGTGTAAGGG
1 TGGTGTAAGGG
39700 AACTACTTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
15 14 0.26
16 40 0.74
ACGTcount: A:0.18, C:0.07, G:0.45, T:0.31
Consensus pattern (16 bp):
TGGTGTAAGGGTATGC
Left flanking sequence: Indices 39126 -- 39625
CGCAAGCCGCGTGACGGCGAGGTCAACGGGAAGGACTACAACTTCACCGAGGTTGACGCGTTCAA
GAAGATGATCGACAACAAGGAGTTCATCGAGTGGGCCCAGTTCTCGGGCAACTACTACGGGACCT
CGGTGCGTGCCGTCAAGGACGTGGCTGAGAAGGGCAAGCAGTGTCTCTTGGACATCGATATGCAG
GGGGTCAAGCTGGTGAAGAACACCGACTTGAACGCCCGCTACTTGTTTGTGGCTCCTCCTTCCAT
CGAGGAGTTGAGAGCTCGGTTGGAGGGCCGTGGCACCGAGACCCCCGAGCTGCTTGAAAAGCGTC
TTGCCGCGGCGACCTCGGAGATGGAGTACGCCAACACCGGTGCCCACGACAAGGTGATTGTCAAC
GACGACTTGGACCGTGCCTACCAGGAGTTCAAGGAGTTCATCGTCAAGGAGGATTAATAGATAGT
AGAATAGATGTGGTTTTAGTGTGTGGTGGTGGGGTAGTGAGTTAG
Right flanking sequence: Indices 39700 -- 40199
AACTACTTATGCGGTAACCGTCTGTCTCAAGATATGTACAAGAGGCCCTAGCGAAGTCTTCTTAC
GGCGAGTTTGAGCAGCTGTCTGGGTGCGTCTAATGTGGCCCAGGACATCGTATTCACGGGTATTT
TAACTTGCAGTACCACTCACAACCCGTTACGGTAACTCTCCCGGTGAACCACCTTTCTTCCTGCT
TTGTTGAGTAAATTATTATATCTATCCGGATGGGTTTAATGCGGATATTTAGGGGCTCATTCCCC
GGTCTACACTGATCCAGGGTGCCTACAGCTAAACGAGGGTCCCGATCTGATGATCCCAGCCTCAC
CCCGCTGGAGCCACTCTTTCTGGCATCACAACTGACCTCCCCTACCCGCAAACCGACACCATCTT
TTCAGCCACACCGGTTCTTTCTCTACTTCTATATCGTGCAGGGTGCAGCCAGGGGACTGCTGTAA
AAAGAAAAGACCGGGCAACGAGCCCCAGCAACCGGGATCGCCCAC
Found at i:39674 original size:31 final size:31
Alignment explanation
Indices: 39626--39695 Score: 113
Period size: 31 Copynumber: 2.2 Consensus size: 31
39616 AGTGAGTTAG
*
39626 TGGTGTAAGGGTATGCTGGTGTAAGGGTATGC
1 TGGTGT-AGGATATGCTGGTGTAAGGGTATGC
*
39658 TGGTGTAGGATATGCTGGTGTCAGGGTATGC
1 TGGTGTAGGATATGCTGGTGTAAGGGTATGC
39689 TGGTGTA
1 TGGTGTA
39696 AGGGAACTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 30 0.83
32 6 0.17
ACGTcount: A:0.17, C:0.07, G:0.43, T:0.33
Consensus pattern (31 bp):
TGGTGTAGGATATGCTGGTGTAAGGGTATGC
Left flanking sequence: Indices 39126 -- 39625
CGCAAGCCGCGTGACGGCGAGGTCAACGGGAAGGACTACAACTTCACCGAGGTTGACGCGTTCAA
GAAGATGATCGACAACAAGGAGTTCATCGAGTGGGCCCAGTTCTCGGGCAACTACTACGGGACCT
CGGTGCGTGCCGTCAAGGACGTGGCTGAGAAGGGCAAGCAGTGTCTCTTGGACATCGATATGCAG
GGGGTCAAGCTGGTGAAGAACACCGACTTGAACGCCCGCTACTTGTTTGTGGCTCCTCCTTCCAT
CGAGGAGTTGAGAGCTCGGTTGGAGGGCCGTGGCACCGAGACCCCCGAGCTGCTTGAAAAGCGTC
TTGCCGCGGCGACCTCGGAGATGGAGTACGCCAACACCGGTGCCCACGACAAGGTGATTGTCAAC
GACGACTTGGACCGTGCCTACCAGGAGTTCAAGGAGTTCATCGTCAAGGAGGATTAATAGATAGT
AGAATAGATGTGGTTTTAGTGTGTGGTGGTGGGGTAGTGAGTTAG
Right flanking sequence: Indices 39696 -- 40195
AGGGAACTACTTATGCGGTAACCGTCTGTCTCAAGATATGTACAAGAGGCCCTAGCGAAGTCTTC
TTACGGCGAGTTTGAGCAGCTGTCTGGGTGCGTCTAATGTGGCCCAGGACATCGTATTCACGGGT
ATTTTAACTTGCAGTACCACTCACAACCCGTTACGGTAACTCTCCCGGTGAACCACCTTTCTTCC
TGCTTTGTTGAGTAAATTATTATATCTATCCGGATGGGTTTAATGCGGATATTTAGGGGCTCATT
CCCCGGTCTACACTGATCCAGGGTGCCTACAGCTAAACGAGGGTCCCGATCTGATGATCCCAGCC
TCACCCCGCTGGAGCCACTCTTTCTGGCATCACAACTGACCTCCCCTACCCGCAAACCGACACCA
TCTTTTCAGCCACACCGGTTCTTTCTCTACTTCTATATCGTGCAGGGTGCAGCCAGGGGACTGCT
GTAAAAAGAAAAGACCGGGCAACGAGCCCCAGCAACCGGGATCGC
Found at i:40901 original size:20 final size:17
Alignment explanation
Indices: 40873--40926 Score: 54
Period size: 20 Copynumber: 2.9 Consensus size: 17
40863 AGTCTGAAGC
40873 GTGTAGTGGGTGGGTGACGT
1 GTGT-GTGGGTGGGTG--GT
*
40893 GTGTGGTGGGTGTGTGGT
1 GTGT-GTGGGTGGGTGGT
*
40911 GTGTGTGGGTGTGTGG
1 GTGTGTGGGTGGGTGG
40927 GTCTTTGGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 12 0.38
18 6 0.19
20 14 0.44
ACGTcount: A:0.04, C:0.02, G:0.59, T:0.35
Consensus pattern (17 bp):
GTGTGTGGGTGGGTGGT
Left flanking sequence: Indices 40373 -- 40872
TGAACAGTGCTCTCCCATCGTCGTTTGAGCTCAAAGAGGAGGAGGACGACCTTGTCCACCGCATC
TGGGAGAAGTGTAAGGAGCAGCCTGTGGTGCCGCTTGGCACCTTGGCCACGCTGGCAGCGGTGTT
TTTGGCTGCCAAGCTGATGAAGCGCGGGGAAAAGATCAAGACCCAGGTGTACTTCCGGTACCGGA
TTGTGTTCCAGGCGATCACGTTGATTGCGTTGGTGCTGGGTCTGTTCTGGCTCAAAAAAGAGACG
GTGGACTACAAGCAGAAGCGCGAGGAGCAGCTCCGCGAGAAGGCCAAGCTCAGAGAAAAGTTGTG
GATCGAGGAGTTGGAGCGTCGTGACGCCCAGATGCAAGCGCGCAAGCGCAAGGCCGAGGAGCTGC
GTGCTGAGCTTCGCCAGGTGGCGGCCGAGGGGTTCAAGCAGGAGGCCAAGTCTCGCGACGAGGAA
AATTAGTGCATAGTGTACATAGTAACGACGATATGAGTCTGAAGC
Right flanking sequence: Indices 40927 -- 41426
GTCTTTGGATCGGTCTAGACCCAGAACAAAGACGAGGAATGATCTAGCGCGAGTGAGCGGAGCCG
GCGGGTTCAATCCAACGGTTGGTGATTTGCGGATGATGGAGGTTTATCATGATGCTGTACCCAGC
ATTGAAAGTGTCGTAGACGGGAGTAAGGACCATTCCTGTGGTCTAGATCTATCGAACTGGGCGAT
AAACTGGCATTCCAGCTCACGCTAGATCTGATCTCAGTGCATGTCTCGGGAATGCCACTCCCGCT
TATTATTCTAATCCAGGCTTGGCAATGCTTCCAAAATGGGTTTCGAATGGGTTCGAATGGTTTGG
CCTCAACTATAAAAGCAGGGTCCCCGTCTATGGTTTCATTCACACCTTGTATCAGGGCTTCACAG
TGAACCCAAATGACCGGTCTGAACGAGAGTCTTTGTACTTTTCAACTTCTTCTTCTTCTTCTTCA
GTCAACCAGACTCCTTCTACTCTCCTTCTTCTCCTTTTGATCTAT
Found at i:43544 original size:17 final size:17
Alignment explanation
Indices: 43522--43555 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
43512 GCGGGACCGG
43522 AGTGTTTTTCTCTCTAT
1 AGTGTTTTTCTCTCTAT
*
43539 AGTGTTTTTCTTTCTAT
1 AGTGTTTTTCTCTCTAT
43556 TTTCTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.62
Consensus pattern (17 bp):
AGTGTTTTTCTCTCTAT
Left flanking sequence: Indices 43022 -- 43521
CACTGGAAGAGGGGAACACGCGGGATTGGGGCGGTTCCCGGGGTCTAGGCTGGTGGCGGACGGGT
CGGGTGGGTGACGAGCGGGTGCGGTTACTGTGTATAGCTTTTTTTGCTGGGTTTTTGGGGTTCCT
GGGCCGATTTGGGGCAACCGAAAATGACTCATCGCCGCTGCCGAGCCGCCAACGGTGATGCGTGC
TGCGAGGGTAAGACACGACCAGAGTAGCCTCGGAAGGAGAGTACCCCTATGTGGGCTTGGCAGTG
TTGTGGTGGGCGTGGTGGACGGGTTTTGAGTACGTGGCACGGAGGGGTGGATCTCTATTGTCCCC
ATTCCCTTGGTTACAAAGGCATTGTTTTCCCCACATTGCTTTTTTTTGCAAGGCTGTCAAACGTA
CCACTTTGGGCTATGGTGAAACGGACCAAGGGAAGCGAGATGGGGCGAGACGGGGCGGGAGTTGC
GGGAGTTGCGGAACGGTGGGAAGCAGAAGCGAACAGCGGGACCGG
Right flanking sequence: Indices 43556 -- 44055
TTTCTTTCTTCCGTCTTTGGTTACCAAAGTTTATTCCATTACGAGTTAGGAAGTGTAAGCTGATT
ATGCTTGCTTTTGGTTGCAATTTCAGTCCAGAACAGTGTGGTGATTCAGCGGGCTGCAGAGGAAG
GATCAGCTGTGGTATTTTCTCACCGATACTTGCTCTTCTACCAGTTCCAATCACTCTACCCAATC
GACTCTCTACTTTACCAACACTCACTCAAATAAGCTTCTCAATGAATGCACCATCTAACAAACGC
TTCTCTGCCAACACACTCACCCAACCTACTCTCTACCAACACTCCACCCCTCTGTACTCTACCAA
CACTCTTTCTCTACTCCACCAACACCCACCCAACCTACTCCACCAACACCCACGCAATCTACTCC
ACCCCACCTAGTCTCACCTACTCTCCACCTACTCTCCACTCTCCAATCTCCACCTATTCTCCCCT
CTCAATCTACTTCCACTCTCCTCCTACACCACTCCTTCTCGCTTC
Found at i:43922 original size:24 final size:24
Alignment explanation
Indices: 43891--43948 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
43881 CACTCTTTCT
43891 CTACTCCACCAACACCCACCCAAC
1 CTACTCCACCAACACCCACCCAAC
* *
43915 CTACTCCACCAACACCCACGCAAT
1 CTACTCCACCAACACCCACCCAAC
43939 CTACTCCACC
1 CTACTCCACC
43949 CCACCTAGTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.31, C:0.55, G:0.02, T:0.12
Consensus pattern (24 bp):
CTACTCCACCAACACCCACCCAAC
Left flanking sequence: Indices 43391 -- 43890
TTTGCAAGGCTGTCAAACGTACCACTTTGGGCTATGGTGAAACGGACCAAGGGAAGCGAGATGGG
GCGAGACGGGGCGGGAGTTGCGGGAGTTGCGGAACGGTGGGAAGCAGAAGCGAACAGCGGGACCG
GAGTGTTTTTCTCTCTATAGTGTTTTTCTTTCTATTTTCTTTCTTCCGTCTTTGGTTACCAAAGT
TTATTCCATTACGAGTTAGGAAGTGTAAGCTGATTATGCTTGCTTTTGGTTGCAATTTCAGTCCA
GAACAGTGTGGTGATTCAGCGGGCTGCAGAGGAAGGATCAGCTGTGGTATTTTCTCACCGATACT
TGCTCTTCTACCAGTTCCAATCACTCTACCCAATCGACTCTCTACTTTACCAACACTCACTCAAA
TAAGCTTCTCAATGAATGCACCATCTAACAAACGCTTCTCTGCCAACACACTCACCCAACCTACT
CTCTACCAACACTCCACCCCTCTGTACTCTACCAACACTCTTTCT
Right flanking sequence: Indices 43949 -- 44448
CCACCTAGTCTCACCTACTCTCCACCTACTCTCCACTCTCCAATCTCCACCTATTCTCCCCTCTC
AATCTACTTCCACTCTCCTCCTACACCACTCCTTCTCGCTTCTATTATATTACACTAGTTGTCGG
CACCCGCCGTCTTGTACCGCCGGTAAAACTCAAACACCTCGTCCATCATCGCGGTGATGCCCCGG
TTGGGAATGTGGTCGCCCTTGTCCTGGTGGGGCACCGGCACCTCCAGGTACAACGCCTGCACCAT
CAGGTTGATCTTGATGAGCCCCTCGGTGGCAATCAAGTCGCCTAGCGTCGCCGTCAACGCCGGGG
AAAACTCCAGGTACCACCGGTGGTTCCACACCAACAACTTGACCACCAGCTCCAAGATCTTCTCC
AGAAGCGTGGTGTTGGCCTTGGCGTAGTTCTGCGGCGCCAGCCCCGTGCCCGAGTTGCGCTGCAC
CATCTTGGCCCGCTCCATCTGGTAGTACTTGCACAACTCGCCCTG
Found at i:43976 original size:11 final size:11
Alignment explanation
Indices: 43949--44007 Score: 57
Period size: 11 Copynumber: 5.2 Consensus size: 11
43939 CTACTCCACC
*
43949 CCACCTAGTCT
1 CCACCTACTCT
43960 -CACCTACTCT
1 CCACCTACTCT
43970 CCACCTACTCT
1 CCACCTACTCT
*
43981 CCACTCTCCAATCT
1 CCAC-CT--ACTCT
*
43995 CCACCTATTCT
1 CCACCTACTCT
44006 CC
1 CC
44008 CCTCTCAATC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
10 9 0.22
11 20 0.49
12 2 0.05
13 2 0.05
14 8 0.20
ACGTcount: A:0.19, C:0.51, G:0.02, T:0.29
Consensus pattern (11 bp):
CCACCTACTCT
Left flanking sequence: Indices 43449 -- 43948
AGATGGGGCGAGACGGGGCGGGAGTTGCGGGAGTTGCGGAACGGTGGGAAGCAGAAGCGAACAGC
GGGACCGGAGTGTTTTTCTCTCTATAGTGTTTTTCTTTCTATTTTCTTTCTTCCGTCTTTGGTTA
CCAAAGTTTATTCCATTACGAGTTAGGAAGTGTAAGCTGATTATGCTTGCTTTTGGTTGCAATTT
CAGTCCAGAACAGTGTGGTGATTCAGCGGGCTGCAGAGGAAGGATCAGCTGTGGTATTTTCTCAC
CGATACTTGCTCTTCTACCAGTTCCAATCACTCTACCCAATCGACTCTCTACTTTACCAACACTC
ACTCAAATAAGCTTCTCAATGAATGCACCATCTAACAAACGCTTCTCTGCCAACACACTCACCCA
ACCTACTCTCTACCAACACTCCACCCCTCTGTACTCTACCAACACTCTTTCTCTACTCCACCAAC
ACCCACCCAACCTACTCCACCAACACCCACGCAATCTACTCCACC
Right flanking sequence: Indices 44008 -- 44507
CCTCTCAATCTACTTCCACTCTCCTCCTACACCACTCCTTCTCGCTTCTATTATATTACACTAGT
TGTCGGCACCCGCCGTCTTGTACCGCCGGTAAAACTCAAACACCTCGTCCATCATCGCGGTGATG
CCCCGGTTGGGAATGTGGTCGCCCTTGTCCTGGTGGGGCACCGGCACCTCCAGGTACAACGCCTG
CACCATCAGGTTGATCTTGATGAGCCCCTCGGTGGCAATCAAGTCGCCTAGCGTCGCCGTCAACG
CCGGGGAAAACTCCAGGTACCACCGGTGGTTCCACACCAACAACTTGACCACCAGCTCCAAGATC
TTCTCCAGAAGCGTGGTGTTGGCCTTGGCGTAGTTCTGCGGCGCCAGCCCCGTGCCCGAGTTGCG
CTGCACCATCTTGGCCCGCTCCATCTGGTAGTACTTGCACAACTCGCCCTGGGCCTTCAGCGAGA
ACCGCAGCTGGAGCGCCGCCGCAAACGCCACCAGCCCCTCCTTAT
Found at i:43998 original size:25 final size:24
Alignment explanation
Indices: 43967--44018 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
43957 TCTCACCTAC
43967 TCTCCACCTACTCTCCACTCTCCAA
1 TCTCCACCTACTCTCCACTCT-CAA
* *
43992 TCTCCACCTATTCTCCCCTCTCAA
1 TCTCCACCTACTCTCCACTCTCAA
44016 TCT
1 TCT
44019 ACTTCCACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (24 bp):
TCTCCACCTACTCTCCACTCTCAA
Left flanking sequence: Indices 43467 -- 43966
CGGGAGTTGCGGGAGTTGCGGAACGGTGGGAAGCAGAAGCGAACAGCGGGACCGGAGTGTTTTTC
TCTCTATAGTGTTTTTCTTTCTATTTTCTTTCTTCCGTCTTTGGTTACCAAAGTTTATTCCATTA
CGAGTTAGGAAGTGTAAGCTGATTATGCTTGCTTTTGGTTGCAATTTCAGTCCAGAACAGTGTGG
TGATTCAGCGGGCTGCAGAGGAAGGATCAGCTGTGGTATTTTCTCACCGATACTTGCTCTTCTAC
CAGTTCCAATCACTCTACCCAATCGACTCTCTACTTTACCAACACTCACTCAAATAAGCTTCTCA
ATGAATGCACCATCTAACAAACGCTTCTCTGCCAACACACTCACCCAACCTACTCTCTACCAACA
CTCCACCCCTCTGTACTCTACCAACACTCTTTCTCTACTCCACCAACACCCACCCAACCTACTCC
ACCAACACCCACGCAATCTACTCCACCCCACCTAGTCTCACCTAC
Right flanking sequence: Indices 44019 -- 44518
ACTTCCACTCTCCTCCTACACCACTCCTTCTCGCTTCTATTATATTACACTAGTTGTCGGCACCC
GCCGTCTTGTACCGCCGGTAAAACTCAAACACCTCGTCCATCATCGCGGTGATGCCCCGGTTGGG
AATGTGGTCGCCCTTGTCCTGGTGGGGCACCGGCACCTCCAGGTACAACGCCTGCACCATCAGGT
TGATCTTGATGAGCCCCTCGGTGGCAATCAAGTCGCCTAGCGTCGCCGTCAACGCCGGGGAAAAC
TCCAGGTACCACCGGTGGTTCCACACCAACAACTTGACCACCAGCTCCAAGATCTTCTCCAGAAG
CGTGGTGTTGGCCTTGGCGTAGTTCTGCGGCGCCAGCCCCGTGCCCGAGTTGCGCTGCACCATCT
TGGCCCGCTCCATCTGGTAGTACTTGCACAACTCGCCCTGGGCCTTCAGCGAGAACCGCAGCTGG
AGCGCCGCCGCAAACGCCACCAGCCCCTCCTTATAGTGCTTGAGC
Found at i:46542 original size:14 final size:15
Alignment explanation
Indices: 46525--46610 Score: 81
Period size: 14 Copynumber: 5.8 Consensus size: 15
46515 GGGGGTGGGG
46525 GTGGTGAGTGTG-GT
1 GTGGTGAGTGTGTGT
* *
46539 GTGGTGGGGGTGGTGT
1 GTGGTGAGTGT-GTGT
46555 GTGGT--GTGTAGTGT
1 GTGGTGAGTGT-GTGT
*
46569 GTGGTGAGTG-GTGA
1 GTGGTGAGTGTGTGT
*
46583 GTGGTGAGTGGTGAGT
1 GTGGTGAGT-GTGTGT
46599 GTGGTGAGTGTG
1 GTGGTGAGTGTG
46611 GTGAGTGTGG
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
14 33 0.56
15 5 0.08
16 21 0.36
ACGTcount: A:0.08, C:0.00, G:0.58, T:0.34
Consensus pattern (15 bp):
GTGGTGAGTGTGTGT
Left flanking sequence: Indices 46025 -- 46524
AGGGTGTCAATGCCCGTGTAGTAGAGAAACGTGCCGAGTTCTTTGTGGGACTTGGAGTGGGCACT
GACTTTCTGGATGTTGCAGAGGTCGGCCGGGCCGAGGTCGACAAACCCGGGCATCCGCAGTGTGC
GCTCGATGAGGCACGCGCCGGGGTACTCCTCCTTTGCTCTGGATGTTAGTATACGTGTTGGCTGG
CGGGTGGGTGGTGGCGTGGGCGTGGGACGGTTGTGGGGTCCACGGTGTCCGGTGGGAGTCCAGGC
GGGCTGGTGGCTCGAATGGCGGGTGGAGCGCGGATCCGAGCACATCACTGGGTTTGCCCGCACTG
GGTGGGCCCGGTGGGCGGGGTACTTACTCTGGAATCGAAGCTAATGTCGTGGGAGGCATCGTCGT
GTTGTGGGTAAAGGGCCTTTGTTGATCGGGTAAATGCCAGTTGGCGCGCATTTTCCGCGCAACGA
GGCACAGCGTGGAGGCGAGTGAGAGATGGGGAGATGGGGGTGGGG
Right flanking sequence: Indices 46611 -- 47110
GTGAGTGTGGGTGGGAGTCTGTTGGTAAGGTGTTTGTGTGGGGAGACCGCATTAGATGCAGAATT
GAGGCCATTTTGGTGGGGCTAACGGGGTGGAAGGAGTGGTGCTGGTGTGGTGGGGGTGGCGGGGT
TGATTCGTAGTGTTCTGTGTGCCTGCTTGTGTAGAGTTTTGGGTTCGAGAGGAGTGTTTCTAGTG
TCTAGTGGTGGTGGTGAAAAATGTTCTTGGCGTTGGGATCGAGAGACTGGAAACGAGTGTAGTAG
TAGAGGGTGAGCGGGAAAGTGCTGACAGCGAGCGAATCGACTGTTTACGAGGGCAGTAGCTCCTC
GTGGTTGGGTAGTGCCAGTGTGGTGTGTTGTACTGCATGTAAGTGGCGGTTATATCCATGGAAGT
GATTTCGAAAACGTGGAAAGTGGGTGGATTCGAAGAGAAGCGGTGGACCGTTGGACGTCTAGGTT
GGCTTCTAGCTGTGACCACCTTCTGCGTTGAAGTTTTCACAATTT
Found at i:46563 original size:9 final size:9
Alignment explanation
Indices: 46537--46620 Score: 56
Period size: 9 Copynumber: 9.7 Consensus size: 9
46527 GGTGAGTGTG
*
46537 GTGTGGTGG
1 GTGTGGTGA
* *
46546 GGGTGGTGT
1 GTGTGGTGA
46555 GTG-GTGTGTA
1 GTGTG-GTG-A
46565 GTGTGTGGTGA
1 GTGTG-G-TGA
46576 GTG-G-TGA
1 GTGTGGTGA
46583 GTG-G-TGA
1 GTGTGGTGA
46590 GTG-G-TGA
1 GTGTGGTGA
46597 GTGTGGTGA
1 GTGTGGTGA
46606 GTGTGGTGA
1 GTGTGGTGA
46615 GTGTGG
1 GTGTGG
46621 GTGGGAGTCT
Statistics
Matches: 65, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
7 20 0.31
8 2 0.03
9 30 0.46
10 4 0.06
11 7 0.11
12 2 0.03
ACGTcount: A:0.08, C:0.00, G:0.58, T:0.33
Consensus pattern (9 bp):
GTGTGGTGA
Left flanking sequence: Indices 46037 -- 46536
CCCGTGTAGTAGAGAAACGTGCCGAGTTCTTTGTGGGACTTGGAGTGGGCACTGACTTTCTGGAT
GTTGCAGAGGTCGGCCGGGCCGAGGTCGACAAACCCGGGCATCCGCAGTGTGCGCTCGATGAGGC
ACGCGCCGGGGTACTCCTCCTTTGCTCTGGATGTTAGTATACGTGTTGGCTGGCGGGTGGGTGGT
GGCGTGGGCGTGGGACGGTTGTGGGGTCCACGGTGTCCGGTGGGAGTCCAGGCGGGCTGGTGGCT
CGAATGGCGGGTGGAGCGCGGATCCGAGCACATCACTGGGTTTGCCCGCACTGGGTGGGCCCGGT
GGGCGGGGTACTTACTCTGGAATCGAAGCTAATGTCGTGGGAGGCATCGTCGTGTTGTGGGTAAA
GGGCCTTTGTTGATCGGGTAAATGCCAGTTGGCGCGCATTTTCCGCGCAACGAGGCACAGCGTGG
AGGCGAGTGAGAGATGGGGAGATGGGGGTGGGGGTGGTGAGTGTG
Right flanking sequence: Indices 46621 -- 47120
GTGGGAGTCTGTTGGTAAGGTGTTTGTGTGGGGAGACCGCATTAGATGCAGAATTGAGGCCATTT
TGGTGGGGCTAACGGGGTGGAAGGAGTGGTGCTGGTGTGGTGGGGGTGGCGGGGTTGATTCGTAG
TGTTCTGTGTGCCTGCTTGTGTAGAGTTTTGGGTTCGAGAGGAGTGTTTCTAGTGTCTAGTGGTG
GTGGTGAAAAATGTTCTTGGCGTTGGGATCGAGAGACTGGAAACGAGTGTAGTAGTAGAGGGTGA
GCGGGAAAGTGCTGACAGCGAGCGAATCGACTGTTTACGAGGGCAGTAGCTCCTCGTGGTTGGGT
AGTGCCAGTGTGGTGTGTTGTACTGCATGTAAGTGGCGGTTATATCCATGGAAGTGATTTCGAAA
ACGTGGAAAGTGGGTGGATTCGAAGAGAAGCGGTGGACCGTTGGACGTCTAGGTTGGCTTCTAGC
TGTGACCACCTTCTGCGTTGAAGTTTTCACAATTTTTGGAGTTTT
Found at i:46572 original size:21 final size:21
Alignment explanation
Indices: 46548--46623 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
46538 TGTGGTGGGG
* *
46548 GTGGTGTGTGGTGTGTAGTGT
1 GTGGTGTGTGGTGAGTAGTGA
* *
46569 GTGGTGAGTGGTGAGTGGTGA
1 GTGGTGTGTGGTGAGTAGTGA
46590 GTGGTGAGTGTGGTGAGT-GTG-
1 GTGGT--GTGTGGTGAGTAGTGA
46611 GTGAGTGTG-GGTG
1 GTG-GTGTGTGGTG
46624 GGAGTCTGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
19 4 0.09
20 3 0.06
21 25 0.53
22 5 0.11
23 10 0.21
ACGTcount: A:0.09, C:0.00, G:0.57, T:0.34
Consensus pattern (21 bp):
GTGGTGTGTGGTGAGTAGTGA
Left flanking sequence: Indices 46048 -- 46547
GAGAAACGTGCCGAGTTCTTTGTGGGACTTGGAGTGGGCACTGACTTTCTGGATGTTGCAGAGGT
CGGCCGGGCCGAGGTCGACAAACCCGGGCATCCGCAGTGTGCGCTCGATGAGGCACGCGCCGGGG
TACTCCTCCTTTGCTCTGGATGTTAGTATACGTGTTGGCTGGCGGGTGGGTGGTGGCGTGGGCGT
GGGACGGTTGTGGGGTCCACGGTGTCCGGTGGGAGTCCAGGCGGGCTGGTGGCTCGAATGGCGGG
TGGAGCGCGGATCCGAGCACATCACTGGGTTTGCCCGCACTGGGTGGGCCCGGTGGGCGGGGTAC
TTACTCTGGAATCGAAGCTAATGTCGTGGGAGGCATCGTCGTGTTGTGGGTAAAGGGCCTTTGTT
GATCGGGTAAATGCCAGTTGGCGCGCATTTTCCGCGCAACGAGGCACAGCGTGGAGGCGAGTGAG
AGATGGGGAGATGGGGGTGGGGGTGGTGAGTGTGGTGTGGTGGGG
Right flanking sequence: Indices 46624 -- 47123
GGAGTCTGTTGGTAAGGTGTTTGTGTGGGGAGACCGCATTAGATGCAGAATTGAGGCCATTTTGG
TGGGGCTAACGGGGTGGAAGGAGTGGTGCTGGTGTGGTGGGGGTGGCGGGGTTGATTCGTAGTGT
TCTGTGTGCCTGCTTGTGTAGAGTTTTGGGTTCGAGAGGAGTGTTTCTAGTGTCTAGTGGTGGTG
GTGAAAAATGTTCTTGGCGTTGGGATCGAGAGACTGGAAACGAGTGTAGTAGTAGAGGGTGAGCG
GGAAAGTGCTGACAGCGAGCGAATCGACTGTTTACGAGGGCAGTAGCTCCTCGTGGTTGGGTAGT
GCCAGTGTGGTGTGTTGTACTGCATGTAAGTGGCGGTTATATCCATGGAAGTGATTTCGAAAACG
TGGAAAGTGGGTGGATTCGAAGAGAAGCGGTGGACCGTTGGACGTCTAGGTTGGCTTCTAGCTGT
GACCACCTTCTGCGTTGAAGTTTTCACAATTTTTGGAGTTTTCCA
Found at i:46596 original size:7 final size:7
Alignment explanation
Indices: 46525--46599 Score: 70
Period size: 7 Copynumber: 11.4 Consensus size: 7
46515 GGGGGTGGGG
46525 GTGGTGA
1 GTGGTGA
46532 GT-GTG-
1 GTGGTGA
46537 GT-GTG-
1 GTGGTGA
*
46542 GTGG-GG
1 GTGGTGA
*
46548 GTGGTGT
1 GTGGTGA
*
46555 GTGGTGT
1 GTGGTGA
* *
46562 GTAGTGT
1 GTGGTGA
46569 GTGGTGA
1 GTGGTGA
46576 GTGGTGA
1 GTGGTGA
46583 GTGGTGA
1 GTGGTGA
46590 GTGGTGA
1 GTGGTGA
46597 GTG
1 GTG
46600 TGGTGAGTGT
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
5 8 0.13
6 8 0.13
7 45 0.74
ACGTcount: A:0.08, C:0.00, G:0.59, T:0.33
Consensus pattern (7 bp):
GTGGTGA
Left flanking sequence: Indices 46025 -- 46524
AGGGTGTCAATGCCCGTGTAGTAGAGAAACGTGCCGAGTTCTTTGTGGGACTTGGAGTGGGCACT
GACTTTCTGGATGTTGCAGAGGTCGGCCGGGCCGAGGTCGACAAACCCGGGCATCCGCAGTGTGC
GCTCGATGAGGCACGCGCCGGGGTACTCCTCCTTTGCTCTGGATGTTAGTATACGTGTTGGCTGG
CGGGTGGGTGGTGGCGTGGGCGTGGGACGGTTGTGGGGTCCACGGTGTCCGGTGGGAGTCCAGGC
GGGCTGGTGGCTCGAATGGCGGGTGGAGCGCGGATCCGAGCACATCACTGGGTTTGCCCGCACTG
GGTGGGCCCGGTGGGCGGGGTACTTACTCTGGAATCGAAGCTAATGTCGTGGGAGGCATCGTCGT
GTTGTGGGTAAAGGGCCTTTGTTGATCGGGTAAATGCCAGTTGGCGCGCATTTTCCGCGCAACGA
GGCACAGCGTGGAGGCGAGTGAGAGATGGGGAGATGGGGGTGGGG
Right flanking sequence: Indices 46600 -- 47099
TGGTGAGTGTGGTGAGTGTGGGTGGGAGTCTGTTGGTAAGGTGTTTGTGTGGGGAGACCGCATTA
GATGCAGAATTGAGGCCATTTTGGTGGGGCTAACGGGGTGGAAGGAGTGGTGCTGGTGTGGTGGG
GGTGGCGGGGTTGATTCGTAGTGTTCTGTGTGCCTGCTTGTGTAGAGTTTTGGGTTCGAGAGGAG
TGTTTCTAGTGTCTAGTGGTGGTGGTGAAAAATGTTCTTGGCGTTGGGATCGAGAGACTGGAAAC
GAGTGTAGTAGTAGAGGGTGAGCGGGAAAGTGCTGACAGCGAGCGAATCGACTGTTTACGAGGGC
AGTAGCTCCTCGTGGTTGGGTAGTGCCAGTGTGGTGTGTTGTACTGCATGTAAGTGGCGGTTATA
TCCATGGAAGTGATTTCGAAAACGTGGAAAGTGGGTGGATTCGAAGAGAAGCGGTGGACCGTTGG
ACGTCTAGGTTGGCTTCTAGCTGTGACCACCTTCTGCGTTGAAGT
Found at i:53148 original size:55 final size:56
Alignment explanation
Indices: 53037--53234 Score: 307
Period size: 55 Copynumber: 3.6 Consensus size: 56
53027 GAGGGGAAGG
* *
53037 AGTGGGGAAGAGAAACGACGGAGAAC--AGTGGGGAAGAG-AACGACGGAGAACTT
1 AGTGGGGAAGAGAAACGACGGAGAACATAGTGGGGAAGAGAAACTACGGAGAACAT
53090 AGTGGGGAAGAG-AACGACGGAGAACATAGTGGGGAAGAGAAACTACGGAGAACAT
1 AGTGGGGAAGAGAAACGACGGAGAACATAGTGGGGAAGAGAAACTACGGAGAACAT
* * *
53145 AGTGGGGGAGA-AAACGACGGAGAACTTAGTGGGGAAGAGAAACTACGGAGAACAG
1 AGTGGGGAAGAGAAACGACGGAGAACATAGTGGGGAAGAGAAACTACGGAGAACAT
*
53200 AGTGGGGAAGAGAAACTACGGAGAACATAGTGGGG
1 AGTGGGGAAGAGAAACGACGGAGAACATAGTGGGG
53235 CACGGGGAAG
Statistics
Matches: 132, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
52 13 0.10
53 12 0.09
54 12 0.09
55 74 0.56
56 21 0.16
ACGTcount: A:0.40, C:0.11, G:0.40, T:0.09
Consensus pattern (56 bp):
AGTGGGGAAGAGAAACGACGGAGAACATAGTGGGGAAGAGAAACTACGGAGAACAT
Left flanking sequence: Indices 52537 -- 53036
CTACGTGGTGTTGACACTGTTGGTGTTTGTGGTCTTCCTCTACCTCCGGAAGGTGGTGGTTGGCC
TCTTTTAATCATACCCGGGGACTCCCCTTTGCATATAGAATTGACTTCTTAATAAAATATTGGTT
TGGAACTGGTGATGGAATGGGGTGGAATTGTCTAAATTAGCTTAATTGTGTGACTGTGGATGGAT
TGTTGTGGGATTGTTGTCTCGATTGCTTGGATTGTCTGCTATTGTTCTGTGGTGTTATCGCGGTG
GAAGTGTCTGCTTCGGAGTTCACGGTGAGCTTTTCCGAGGTGGTTGACCACCCAACTAGCGAGAT
TGGCTGTCCATACTATTAATAGGCCTGGTCACAGACAATAGGGTGGTGTTGACGATTATTTTTTC
CATGCCTTGACGAGGTTGGAGGGGAAGCTTTTGCATTTCAACCTGAGACAGTGACCAGCATATCC
GCCATTGTTACTACACAGGGTTTGCGATGAGTCAGGAGGGGAAGG
Right flanking sequence: Indices 53235 -- 53734
CACGGGGAAGACGGGAATGGGAACAGGTGGAGTATAAAGAGGGGAATGTAATAGGGTGAGAGACG
CGTATGAGGGGAACGACCCACCATTATAAATAGCACATCAGCAAGACAAGGGGGCTATACCCCAG
GTAAACAATGCTCTACAATAGCCAGCCGCGAGGGGGAAACCCAACAAATTCGACCTGGCTACGTA
CTCAAACCATAGGTGTTCAAACCATGTTCAAACCATTAGTGTGTATTCTATAACCTACTCTTCGT
CGTCATCGTCGTCGTCATCCCGGGGCTGGAGCTCGTTGGTAACACCCTCGGGGTGCTCACCAATC
CACTGGGCGACCCACTGACAGATTCTGTCGACGTTGTCGTCCATCTCATCGGCATTGTTCAGGGT
AAGCTCGATGACGATTTCGGGCACGTACGAGTCGCGGGCCTCCTGGGCAATCACCTCCATGATCT
CACAGTCAATGTTCTCCTGGATCTTGACCTCGTTGTAGTTACGCT
Found at i:53248 original size:28 final size:28
Alignment explanation
Indices: 53037--53234 Score: 298
Period size: 28 Copynumber: 7.2 Consensus size: 28
53027 GAGGGGAAGG
53037 AGTGGGGAAGAGAAACGACGGAGAAC--
1 AGTGGGGAAGAGAAACGACGGAGAACAT
*
53063 AGTGGGGAAGAG-AACGACGGAGAACTT
1 AGTGGGGAAGAGAAACGACGGAGAACAT
53090 AGTGGGGAAGAG-AACGACGGAGAACAT
1 AGTGGGGAAGAGAAACGACGGAGAACAT
*
53117 AGTGGGGAAGAGAAACTACGGAGAACAT
1 AGTGGGGAAGAGAAACGACGGAGAACAT
* *
53145 AGTGGGGGAGA-AAACGACGGAGAACTT
1 AGTGGGGAAGAGAAACGACGGAGAACAT
* *
53172 AGTGGGGAAGAGAAACTACGGAGAACAG
1 AGTGGGGAAGAGAAACGACGGAGAACAT
*
53200 AGTGGGGAAGAGAAACTACGGAGAACAT
1 AGTGGGGAAGAGAAACGACGGAGAACAT
53228 AGTGGGG
1 AGTGGGG
53235 CACGGGGAAG
Statistics
Matches: 158, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
25 13 0.08
26 12 0.08
27 62 0.39
28 71 0.45
ACGTcount: A:0.40, C:0.11, G:0.40, T:0.09
Consensus pattern (28 bp):
AGTGGGGAAGAGAAACGACGGAGAACAT
Left flanking sequence: Indices 52537 -- 53036
CTACGTGGTGTTGACACTGTTGGTGTTTGTGGTCTTCCTCTACCTCCGGAAGGTGGTGGTTGGCC
TCTTTTAATCATACCCGGGGACTCCCCTTTGCATATAGAATTGACTTCTTAATAAAATATTGGTT
TGGAACTGGTGATGGAATGGGGTGGAATTGTCTAAATTAGCTTAATTGTGTGACTGTGGATGGAT
TGTTGTGGGATTGTTGTCTCGATTGCTTGGATTGTCTGCTATTGTTCTGTGGTGTTATCGCGGTG
GAAGTGTCTGCTTCGGAGTTCACGGTGAGCTTTTCCGAGGTGGTTGACCACCCAACTAGCGAGAT
TGGCTGTCCATACTATTAATAGGCCTGGTCACAGACAATAGGGTGGTGTTGACGATTATTTTTTC
CATGCCTTGACGAGGTTGGAGGGGAAGCTTTTGCATTTCAACCTGAGACAGTGACCAGCATATCC
GCCATTGTTACTACACAGGGTTTGCGATGAGTCAGGAGGGGAAGG
Right flanking sequence: Indices 53235 -- 53734
CACGGGGAAGACGGGAATGGGAACAGGTGGAGTATAAAGAGGGGAATGTAATAGGGTGAGAGACG
CGTATGAGGGGAACGACCCACCATTATAAATAGCACATCAGCAAGACAAGGGGGCTATACCCCAG
GTAAACAATGCTCTACAATAGCCAGCCGCGAGGGGGAAACCCAACAAATTCGACCTGGCTACGTA
CTCAAACCATAGGTGTTCAAACCATGTTCAAACCATTAGTGTGTATTCTATAACCTACTCTTCGT
CGTCATCGTCGTCGTCATCCCGGGGCTGGAGCTCGTTGGTAACACCCTCGGGGTGCTCACCAATC
CACTGGGCGACCCACTGACAGATTCTGTCGACGTTGTCGTCCATCTCATCGGCATTGTTCAGGGT
AAGCTCGATGACGATTTCGGGCACGTACGAGTCGCGGGCCTCCTGGGCAATCACCTCCATGATCT
CACAGTCAATGTTCTCCTGGATCTTGACCTCGTTGTAGTTACGCT
Found at i:55359 original size:9 final size:9
Alignment explanation
Indices: 55345--55377 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
55335 AGCCCAACTA
55345 AAACCCCAC
1 AAACCCCAC
55354 AAACCCCAC
1 AAACCCCAC
55363 AAACCCCAC
1 AAACCCCAC
55372 TAAACC
1 -AAACC
55378 GAGCCAACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.45, C:0.52, G:0.00, T:0.03
Consensus pattern (9 bp):
AAACCCCAC
Left flanking sequence: Indices 54845 -- 55344
TGCGCAGATTGTTGGGCTAAAAGTAGCCAGATCGGTTGTCAACGCCGGCTCTTCTGTCACCCGTT
ATTTTTTGCATCATTCTTTGTTCACTCGCCTGGTGGGGTTGGTAGTCCAGGGCGTTTCCGGGCTG
GTTGTTTCGTAAGTGGGAGGGGAACTCACCGACACTTTGGTATAGGGGAACGAGAATGGCGTGAG
AGTTGGTGGGACTTTTGCCCGGACACCTGCTTTTCAGCGTCTACTCGGAGACCGTCTTTGAACCT
CACTCATTTACAAATTAGCATCTACGTTCTGGTCAAACTGACCTATTCTATCAATTGAGCAATCA
AAAGCACTCTCTCTTACCCAGAGACAGCTACGTAACCCCAACGACCACTCCAACACCCAACACTC
AACACCCAGAACCCCCCACCTTTTTCCCTTCCCTCCACCACCAGCCTCATACGATTTTTCAATCT
ATTTTTCCCAGGCAGTGCAAGCCAACCAGCATGCTAGCCCAACTA
Right flanking sequence: Indices 55378 -- 55877
GAGCCAACCCACTCTCTCACCAACGATAAACCAAACTCAAACCACCGTAGCTCCTCTCTCGCCAG
CCCCACCTTCCATCGTTCCCCACCAAGCCGCACGCGAACAAAACGTCCACCACCAACCACCTCGT
ATCCCCCCAATGTCAGTGCTTCCCCCGGGCCTCCAGCAGGCGCCCGACGGCTCCCAGCACCCACA
GACCGACCCACAGAACGACTCTGCCCCCGCATCTGGGCCCAACACCCAGTACGGGATGGACGGGC
TCGCGTCGCTCCTCAAAATGGAACAAAATGACACCACGATGTTTGCCCTTGGGCTGGAAGTGGTC
AACTTTGGGCTCGACTTGAGCGAGGGCACCTCGGTGCTCAAGACGTTGGCGCTGCCGTGGGTGGA
GACCCTGCGGCTGGACGTCGAGCCCTACTTTACCCTACCAAAGGCGATCCACCCGCTGAGCATCG
TGCCGCCACCCGGGCCGTGTGACGTCAAGATCCAAAGCTTCAGTG
Found at i:56210 original size:10 final size:10
Alignment explanation
Indices: 56190--56218 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
56180 TGTAGTTGTA
56190 GTTGA-GGTT
1 GTTGAGGGTT
56199 GTTGAGGGTT
1 GTTGAGGGTT
56209 GTTGAGGGTT
1 GTTGAGGGTT
56219 TTGTTGGGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.10, C:0.00, G:0.48, T:0.41
Consensus pattern (10 bp):
GTTGAGGGTT
Left flanking sequence: Indices 55690 -- 56189
GCTGGAAGTGGTCAACTTTGGGCTCGACTTGAGCGAGGGCACCTCGGTGCTCAAGACGTTGGCGC
TGCCGTGGGTGGAGACCCTGCGGCTGGACGTCGAGCCCTACTTTACCCTACCAAAGGCGATCCAC
CCGCTGAGCATCGTGCCGCCACCCGGGCCGTGTGACGTCAAGATCCAAAGCTTCAGTGACGAGAC
GCTTTTCTACATTTTCTACATGAAGCCGCGGGACACCCTCCAGGAGTACGCTGCCCGCGAGCTTG
TGCTGCGCAACTGGCGCTACCACAAGGACATCCAGGTGTGGCTCACCAAGGACTCGCAGGTGGAG
CCGGTGTTGATCCTGCCCGATGTCGAGCGCGGGGTGTACATCTTTTTTGACCCGCACAACTGGAC
CAAGATCAAAAAGGAGTTTGTGTTGCACTACTCGAGTGTGCAGGCGTAGGTCTGCGTGTATCATA
TGTACTATAGAATGGAGACAGGCTGTCCAGTCCGGTGTAGTTGTA
Right flanking sequence: Indices 56219 -- 56718
TTGTTGGGGGTTTTGTTGGGGATTGTGTTGGTTTTGGTATTGTGCCATGGTGAGAGATTGGGTGT
TGATGGCGAGAGATTGAGTATTGATGGCGAGAGATTGAGTATTGAAGGTGAGATAAGCGAGGCGA
TTGAGTATGCGAAGAGTAGGGTACGGAGTTGGTAGTGGCAGTTGGTGGTGATGTGGTCAGTTTTG
CGTGTGTTACTCTAGACTTCTCAGCTCAACTACCATCATATCGGTCAGGTACTCTCAAAGTTCCA
CCAAAGGTTCTTGTTTCGGGTTTGGAACATTAGCACCATTGAAGCGGGTGCATTAAAAAGCCAAA
CTTATACAGAAGCGTCACTTTGGGAATTATGGATTCTTCAAGGTTAATCTTAATTACAAATGGTC
ACAATTACCTATTCTGAAAACTCGTAGCTACACTGTTAATGGTACTCTAAAAGAACACAGAAATA
ACAACTATCTTCCTTATTCAAGTAATCCTGTCTGCATTGGTATTC
Found at i:56224 original size:12 final size:12
Alignment explanation
Indices: 56197--56236 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
56187 GTAGTTGAGG
56197 TTGTTGAGGG--
1 TTGTTGAGGGTT
56207 TTGTTGAGGGTT
1 TTGTTGAGGGTT
*
56219 TTGTTGGGGGTT
1 TTGTTGAGGGTT
56231 TTGTTG
1 TTGTTG
56237 GGGATTGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 10 0.37
12 17 0.63
ACGTcount: A:0.05, C:0.00, G:0.45, T:0.50
Consensus pattern (12 bp):
TTGTTGAGGGTT
Left flanking sequence: Indices 55697 -- 56196
GTGGTCAACTTTGGGCTCGACTTGAGCGAGGGCACCTCGGTGCTCAAGACGTTGGCGCTGCCGTG
GGTGGAGACCCTGCGGCTGGACGTCGAGCCCTACTTTACCCTACCAAAGGCGATCCACCCGCTGA
GCATCGTGCCGCCACCCGGGCCGTGTGACGTCAAGATCCAAAGCTTCAGTGACGAGACGCTTTTC
TACATTTTCTACATGAAGCCGCGGGACACCCTCCAGGAGTACGCTGCCCGCGAGCTTGTGCTGCG
CAACTGGCGCTACCACAAGGACATCCAGGTGTGGCTCACCAAGGACTCGCAGGTGGAGCCGGTGT
TGATCCTGCCCGATGTCGAGCGCGGGGTGTACATCTTTTTTGACCCGCACAACTGGACCAAGATC
AAAAAGGAGTTTGTGTTGCACTACTCGAGTGTGCAGGCGTAGGTCTGCGTGTATCATATGTACTA
TAGAATGGAGACAGGCTGTCCAGTCCGGTGTAGTTGTAGTTGAGG
Right flanking sequence: Indices 56237 -- 56736
GGGATTGTGTTGGTTTTGGTATTGTGCCATGGTGAGAGATTGGGTGTTGATGGCGAGAGATTGAG
TATTGATGGCGAGAGATTGAGTATTGAAGGTGAGATAAGCGAGGCGATTGAGTATGCGAAGAGTA
GGGTACGGAGTTGGTAGTGGCAGTTGGTGGTGATGTGGTCAGTTTTGCGTGTGTTACTCTAGACT
TCTCAGCTCAACTACCATCATATCGGTCAGGTACTCTCAAAGTTCCACCAAAGGTTCTTGTTTCG
GGTTTGGAACATTAGCACCATTGAAGCGGGTGCATTAAAAAGCCAAACTTATACAGAAGCGTCAC
TTTGGGAATTATGGATTCTTCAAGGTTAATCTTAATTACAAATGGTCACAATTACCTATTCTGAA
AACTCGTAGCTACACTGTTAATGGTACTCTAAAAGAACACAGAAATAACAACTATCTTCCTTATT
CAAGTAATCCTGTCTGCATTGGTATTCTACTAACCTCTGGCTTGT
Found at i:56237 original size:12 final size:12
Alignment explanation
Indices: 56207--56249 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
56197 TTGTTGAGGG
*
56207 TTGTTGAGGGTT
1 TTGTTGGGGGTT
56219 TTGTTGGGGGTT
1 TTGTTGGGGGTT
*
56231 TTGTTGGGGATT
1 TTGTTGGGGGTT
*
56243 GTGTTGG
1 TTGTTGG
56250 TTTTGGTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.05, C:0.00, G:0.47, T:0.49
Consensus pattern (12 bp):
TTGTTGGGGGTT
Left flanking sequence: Indices 55707 -- 56206
TTGGGCTCGACTTGAGCGAGGGCACCTCGGTGCTCAAGACGTTGGCGCTGCCGTGGGTGGAGACC
CTGCGGCTGGACGTCGAGCCCTACTTTACCCTACCAAAGGCGATCCACCCGCTGAGCATCGTGCC
GCCACCCGGGCCGTGTGACGTCAAGATCCAAAGCTTCAGTGACGAGACGCTTTTCTACATTTTCT
ACATGAAGCCGCGGGACACCCTCCAGGAGTACGCTGCCCGCGAGCTTGTGCTGCGCAACTGGCGC
TACCACAAGGACATCCAGGTGTGGCTCACCAAGGACTCGCAGGTGGAGCCGGTGTTGATCCTGCC
CGATGTCGAGCGCGGGGTGTACATCTTTTTTGACCCGCACAACTGGACCAAGATCAAAAAGGAGT
TTGTGTTGCACTACTCGAGTGTGCAGGCGTAGGTCTGCGTGTATCATATGTACTATAGAATGGAG
ACAGGCTGTCCAGTCCGGTGTAGTTGTAGTTGAGGTTGTTGAGGG
Right flanking sequence: Indices 56250 -- 56749
TTTTGGTATTGTGCCATGGTGAGAGATTGGGTGTTGATGGCGAGAGATTGAGTATTGATGGCGAG
AGATTGAGTATTGAAGGTGAGATAAGCGAGGCGATTGAGTATGCGAAGAGTAGGGTACGGAGTTG
GTAGTGGCAGTTGGTGGTGATGTGGTCAGTTTTGCGTGTGTTACTCTAGACTTCTCAGCTCAACT
ACCATCATATCGGTCAGGTACTCTCAAAGTTCCACCAAAGGTTCTTGTTTCGGGTTTGGAACATT
AGCACCATTGAAGCGGGTGCATTAAAAAGCCAAACTTATACAGAAGCGTCACTTTGGGAATTATG
GATTCTTCAAGGTTAATCTTAATTACAAATGGTCACAATTACCTATTCTGAAAACTCGTAGCTAC
ACTGTTAATGGTACTCTAAAAGAACACAGAAATAACAACTATCTTCCTTATTCAAGTAATCCTGT
CTGCATTGGTATTCTACTAACCTCTGGCTTGTTTACTACTGTCAT
Found at i:56336 original size:21 final size:21
Alignment explanation
Indices: 56265--56328 Score: 101
Period size: 21 Copynumber: 3.0 Consensus size: 21
56255 GTATTGTGCC
* * *
56265 ATGGTGAGAGATTGGGTGTTG
1 ATGGCGAGAGATTGAGTATTG
56286 ATGGCGAGAGATTGAGTATTG
1 ATGGCGAGAGATTGAGTATTG
56307 ATGGCGAGAGATTGAGTATTG
1 ATGGCGAGAGATTGAGTATTG
56328 A
1 A
56329 AGGTGAGATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.27, C:0.03, G:0.41, T:0.30
Consensus pattern (21 bp):
ATGGCGAGAGATTGAGTATTG
Left flanking sequence: Indices 55765 -- 56264
GGAGACCCTGCGGCTGGACGTCGAGCCCTACTTTACCCTACCAAAGGCGATCCACCCGCTGAGCA
TCGTGCCGCCACCCGGGCCGTGTGACGTCAAGATCCAAAGCTTCAGTGACGAGACGCTTTTCTAC
ATTTTCTACATGAAGCCGCGGGACACCCTCCAGGAGTACGCTGCCCGCGAGCTTGTGCTGCGCAA
CTGGCGCTACCACAAGGACATCCAGGTGTGGCTCACCAAGGACTCGCAGGTGGAGCCGGTGTTGA
TCCTGCCCGATGTCGAGCGCGGGGTGTACATCTTTTTTGACCCGCACAACTGGACCAAGATCAAA
AAGGAGTTTGTGTTGCACTACTCGAGTGTGCAGGCGTAGGTCTGCGTGTATCATATGTACTATAG
AATGGAGACAGGCTGTCCAGTCCGGTGTAGTTGTAGTTGAGGTTGTTGAGGGTTGTTGAGGGTTT
TGTTGGGGGTTTTGTTGGGGATTGTGTTGGTTTTGGTATTGTGCC
Right flanking sequence: Indices 56329 -- 56828
AGGTGAGATAAGCGAGGCGATTGAGTATGCGAAGAGTAGGGTACGGAGTTGGTAGTGGCAGTTGG
TGGTGATGTGGTCAGTTTTGCGTGTGTTACTCTAGACTTCTCAGCTCAACTACCATCATATCGGT
CAGGTACTCTCAAAGTTCCACCAAAGGTTCTTGTTTCGGGTTTGGAACATTAGCACCATTGAAGC
GGGTGCATTAAAAAGCCAAACTTATACAGAAGCGTCACTTTGGGAATTATGGATTCTTCAAGGTT
AATCTTAATTACAAATGGTCACAATTACCTATTCTGAAAACTCGTAGCTACACTGTTAATGGTAC
TCTAAAAGAACACAGAAATAACAACTATCTTCCTTATTCAAGTAATCCTGTCTGCATTGGTATTC
TACTAACCTCTGGCTTGTTTACTACTGTCATTCTGACACTGGCTATCCAGCCCACCCATTCTATA
TGCAGGACTCGAAGCTCAAGCAAACAAGGCCCCAACGTAAAGGTC
Found at i:59078 original size:22 final size:22
Alignment explanation
Indices: 59053--59151 Score: 157
Period size: 21 Copynumber: 4.6 Consensus size: 22
59043 TGAGCGAGGA
59053 AGATGGTTTGATGAGACGTGGT
1 AGATGGTTTGATGAGACGTGGT
*
59075 AGAT-GCTTGATGAGACGTGGT
1 AGATGGTTTGATGAGACGTGGT
*
59096 AGAT-GCTTGATGAGACGTGGT
1 AGATGGTTTGATGAGACGTGGT
59117 AGATGGTTTGATGAGACGTGGT
1 AGATGGTTTGATGAGACGTGGT
*
59139 AGATGGTATGATG
1 AGATGGTTTGATG
59152 GTAGAGATGT
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
21 41 0.56
22 32 0.44
ACGTcount: A:0.24, C:0.06, G:0.39, T:0.30
Consensus pattern (22 bp):
AGATGGTTTGATGAGACGTGGT
Left flanking sequence: Indices 58553 -- 59052
GGCGCTTGTGGGGGACTACACGCCGCTGTTGCAGAAGCTCTCGCACCAGGACATCGACAAGCTCG
ACAAGGAGATCGAGCGCGACCTGAGACGCAAGCGGCGACACAACTTGAACGAGGACCACCTCGCG
GCAATGGTGGGCACTCCGCTGGCGCTGCTGCGGGGCACGCTGCGACGGGTCAACTTCCACCTGAA
CCGGGGAGCGCTGCTGGCGCCCGACCTTTCCGATGTGCCCAAGACGTTCCGAACGCCGGCTCCGT
CGCTGGTGCTTCCCGGTGCGGTGGACTTGGGGGTGCCCGGGGTGTACGACTACACCGAGGTGTAT
GTGAACAAGACGCAGATCCGCAACCCTGACTATAGCCCTCCGTTGGCTGCGGACGCGGTGCGGTA
CCACTTTGACCACAACCGGGGTACGTTCATGGTGAAGTTGCGGTTCCGTCGGAACCGGTGAGGGT
TTGTATTATAATGTAATGGTAGAAAGTAGAGGTGGTGAGCGAGGA
Right flanking sequence: Indices 59152 -- 59651
GTAGAGATGTTGGTGGTTGGCGACGATTGTAGACGACCGTAGATGGTTTGATGGTAGGGGTGTCC
ATGTAAATCAGTGTTAGTTCTTGGAAATTGCGGGATTCACTCATTTTCTGGAGCAGTCGAGATAC
ACGGTTTCATTTTTCATCTTATTCGTATTTGTTTGTCTCGTTGAAACCCGTGTGTCTACTGCTCA
TGTTCTCCTCTCGTTTGATTTGTATTCTGGTTCATCGTCTTTTCTTGTTTTGTTTAATTCACCAT
CTTGTCTATTGTCAACTTGTTCGTCTTGTCACCTTGTTCAACTTGTCATCTTGCTCGTGTCGTCA
CCTTGTTTACTTCGCCATCTTGCTCATCTCACCTTGTTCATTGTGTCATCTTGGTCATCTCGTCG
TCCTGTGATTCCTCCAGTCATACTGTGATGATAACTATGAATACCGTTGCATTTTTATCGACCAA
CTTTACACGGTAGGTCACATGAAACCAAAACGGTTGTCTTTGTGT
Found at i:59106 original size:42 final size:43
Alignment explanation
Indices: 59060--59143 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
59050 GGAAGATGGT
59060 TTGATGAGACGTGGTAGAT-GCTTGATGAGACGTGGTAGATGC
1 TTGATGAGACGTGGTAGATGGCTTGATGAGACGTGGTAGATGC
*
59102 TTGATGAGACGTGGTAGATGGTTTGATGAGACGTGGTAGATG
1 TTGATGAGACGTGGTAGATGGCTTGATGAGACGTGGTAGATG
59144 GTATGATGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 19 0.47
43 21 0.52
ACGTcount: A:0.24, C:0.07, G:0.39, T:0.30
Consensus pattern (43 bp):
TTGATGAGACGTGGTAGATGGCTTGATGAGACGTGGTAGATGC
Left flanking sequence: Indices 58560 -- 59059
GTGGGGGACTACACGCCGCTGTTGCAGAAGCTCTCGCACCAGGACATCGACAAGCTCGACAAGGA
GATCGAGCGCGACCTGAGACGCAAGCGGCGACACAACTTGAACGAGGACCACCTCGCGGCAATGG
TGGGCACTCCGCTGGCGCTGCTGCGGGGCACGCTGCGACGGGTCAACTTCCACCTGAACCGGGGA
GCGCTGCTGGCGCCCGACCTTTCCGATGTGCCCAAGACGTTCCGAACGCCGGCTCCGTCGCTGGT
GCTTCCCGGTGCGGTGGACTTGGGGGTGCCCGGGGTGTACGACTACACCGAGGTGTATGTGAACA
AGACGCAGATCCGCAACCCTGACTATAGCCCTCCGTTGGCTGCGGACGCGGTGCGGTACCACTTT
GACCACAACCGGGGTACGTTCATGGTGAAGTTGCGGTTCCGTCGGAACCGGTGAGGGTTTGTATT
ATAATGTAATGGTAGAAAGTAGAGGTGGTGAGCGAGGAAGATGGT
Right flanking sequence: Indices 59144 -- 59643
GTATGATGGTAGAGATGTTGGTGGTTGGCGACGATTGTAGACGACCGTAGATGGTTTGATGGTAG
GGGTGTCCATGTAAATCAGTGTTAGTTCTTGGAAATTGCGGGATTCACTCATTTTCTGGAGCAGT
CGAGATACACGGTTTCATTTTTCATCTTATTCGTATTTGTTTGTCTCGTTGAAACCCGTGTGTCT
ACTGCTCATGTTCTCCTCTCGTTTGATTTGTATTCTGGTTCATCGTCTTTTCTTGTTTTGTTTAA
TTCACCATCTTGTCTATTGTCAACTTGTTCGTCTTGTCACCTTGTTCAACTTGTCATCTTGCTCG
TGTCGTCACCTTGTTTACTTCGCCATCTTGCTCATCTCACCTTGTTCATTGTGTCATCTTGGTCA
TCTCGTCGTCCTGTGATTCCTCCAGTCATACTGTGATGATAACTATGAATACCGTTGCATTTTTA
TCGACCAACTTTACACGGTAGGTCACATGAAACCAAAACGGTTGT
Found at i:59442 original size:17 final size:17
Alignment explanation
Indices: 59420--59483 Score: 65
Period size: 17 Copynumber: 3.8 Consensus size: 17
59410 ATCTTGTCTA
*
59420 TTGTCAACTTGTTCGTC
1 TTGTCACCTTGTTCGTC
**
59437 TTGTCACCTTGTTCAAC
1 TTGTCACCTTGTTCGTC
* * *
59454 TTGTCATCTTGCTCGTG
1 TTGTCACCTTGTTCGTC
*
59471 TCGTCACCTTGTT
1 TTGTCACCTTGTT
59484 TACTTCGCCA
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.11, C:0.27, G:0.17, T:0.45
Consensus pattern (17 bp):
TTGTCACCTTGTTCGTC
Left flanking sequence: Indices 58920 -- 59419
TTGGCTGCGGACGCGGTGCGGTACCACTTTGACCACAACCGGGGTACGTTCATGGTGAAGTTGCG
GTTCCGTCGGAACCGGTGAGGGTTTGTATTATAATGTAATGGTAGAAAGTAGAGGTGGTGAGCGA
GGAAGATGGTTTGATGAGACGTGGTAGATGCTTGATGAGACGTGGTAGATGCTTGATGAGACGTG
GTAGATGGTTTGATGAGACGTGGTAGATGGTATGATGGTAGAGATGTTGGTGGTTGGCGACGATT
GTAGACGACCGTAGATGGTTTGATGGTAGGGGTGTCCATGTAAATCAGTGTTAGTTCTTGGAAAT
TGCGGGATTCACTCATTTTCTGGAGCAGTCGAGATACACGGTTTCATTTTTCATCTTATTCGTAT
TTGTTTGTCTCGTTGAAACCCGTGTGTCTACTGCTCATGTTCTCCTCTCGTTTGATTTGTATTCT
GGTTCATCGTCTTTTCTTGTTTTGTTTAATTCACCATCTTGTCTA
Right flanking sequence: Indices 59484 -- 59983
TACTTCGCCATCTTGCTCATCTCACCTTGTTCATTGTGTCATCTTGGTCATCTCGTCGTCCTGTG
ATTCCTCCAGTCATACTGTGATGATAACTATGAATACCGTTGCATTTTTATCGACCAACTTTACA
CGGTAGGTCACATGAAACCAAAACGGTTGTCTTTGTGTCCGATTACATCCTGAAAACGAACGATT
CACTCGTCCCGTTTCAGAGACTCCGGTGTCATTTGCAGCCAGCTCAGTTATGTCCGACGGCTCAT
CGTCCGATGGCCACAGATCTGCTGTCATTTCTCCGGTGTCTGCTTTGGGCCAGATTTGCATGTGG
CTGGTCAGATGGCTGCAATCGGCCCAGATTAACTCCGGTTGCTTTAGGTTACCTCCGCTCACAAC
GGCCACCGAAGGTTCCTCTCTTTATCTACGCCCAGATCCCTTCCATTATTATCGGATTGGCGATA
GGCGACCATTGTAACCGACGGTAGCACCGCGCAGACGGAACCGTC
Found at i:59477 original size:34 final size:33
Alignment explanation
Indices: 59420--59529 Score: 100
Period size: 34 Copynumber: 3.3 Consensus size: 33
59410 ATCTTGTCTA
* * * *
59420 TTGTCAACTTGTTCGTCTTGTCACCTTGTTCAAC
1 TTGTCATCTTGCTCGTATCGTCACCTTGTTC-AC
* *
59454 TTGTCATCTTGCTCGTGTCGTCACCTTGTTTAC
1 TTGTCATCTTGCTCGTATCGTCACCTTGTTCAC
* *
59487 TTCGCCATCTTGCTC--ATC-TCACCTTGTTCAT
1 TT-GTCATCTTGCTCGTATCGTCACCTTGTTCAC
59518 TGTGTCATCTTG
1 T-TGTCATCTTG
59530 GTCATCTCGT
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
31 20 0.31
32 3 0.05
33 4 0.06
34 37 0.58
ACGTcount: A:0.12, C:0.28, G:0.15, T:0.45
Consensus pattern (33 bp):
TTGTCATCTTGCTCGTATCGTCACCTTGTTCAC
Left flanking sequence: Indices 58920 -- 59419
TTGGCTGCGGACGCGGTGCGGTACCACTTTGACCACAACCGGGGTACGTTCATGGTGAAGTTGCG
GTTCCGTCGGAACCGGTGAGGGTTTGTATTATAATGTAATGGTAGAAAGTAGAGGTGGTGAGCGA
GGAAGATGGTTTGATGAGACGTGGTAGATGCTTGATGAGACGTGGTAGATGCTTGATGAGACGTG
GTAGATGGTTTGATGAGACGTGGTAGATGGTATGATGGTAGAGATGTTGGTGGTTGGCGACGATT
GTAGACGACCGTAGATGGTTTGATGGTAGGGGTGTCCATGTAAATCAGTGTTAGTTCTTGGAAAT
TGCGGGATTCACTCATTTTCTGGAGCAGTCGAGATACACGGTTTCATTTTTCATCTTATTCGTAT
TTGTTTGTCTCGTTGAAACCCGTGTGTCTACTGCTCATGTTCTCCTCTCGTTTGATTTGTATTCT
GGTTCATCGTCTTTTCTTGTTTTGTTTAATTCACCATCTTGTCTA
Right flanking sequence: Indices 59530 -- 60029
GTCATCTCGTCGTCCTGTGATTCCTCCAGTCATACTGTGATGATAACTATGAATACCGTTGCATT
TTTATCGACCAACTTTACACGGTAGGTCACATGAAACCAAAACGGTTGTCTTTGTGTCCGATTAC
ATCCTGAAAACGAACGATTCACTCGTCCCGTTTCAGAGACTCCGGTGTCATTTGCAGCCAGCTCA
GTTATGTCCGACGGCTCATCGTCCGATGGCCACAGATCTGCTGTCATTTCTCCGGTGTCTGCTTT
GGGCCAGATTTGCATGTGGCTGGTCAGATGGCTGCAATCGGCCCAGATTAACTCCGGTTGCTTTA
GGTTACCTCCGCTCACAACGGCCACCGAAGGTTCCTCTCTTTATCTACGCCCAGATCCCTTCCAT
TATTATCGGATTGGCGATAGGCGACCATTGTAACCGACGGTAGCACCGCGCAGACGGAACCGTCC
CCAGGCAGCAGCAATCAAATGCAGCGAACCCACTCCGGACGCTAA
Found at i:59527 original size:31 final size:30
Alignment explanation
Indices: 59440--59537 Score: 88
Period size: 31 Copynumber: 3.1 Consensus size: 30
59430 GTTCGTCTTG
* *
59440 TCACCTTGTTCAACTTGTCATCTTGCTCGTGTC
1 TCACCTTGTTC-ATTTGTCATCTTGCTC--ATC
* * *
59473 GTCACCTTGTTTACTTCGCCATCTTGCTCATC
1 -TCACCTTGTTCA-TTTGTCATCTTGCTCATC
*
59505 TCACCTTGTTCATTGTGTCATCTTGGTCATC
1 TCACCTTGTTCATT-TGTCATCTTGCTCATC
59536 TC
1 TC
59538 GTCGTCCTGT
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
30 2 0.04
31 26 0.49
32 2 0.04
33 1 0.02
34 22 0.42
ACGTcount: A:0.12, C:0.31, G:0.14, T:0.43
Consensus pattern (30 bp):
TCACCTTGTTCATTTGTCATCTTGCTCATC
Left flanking sequence: Indices 58940 -- 59439
GTACCACTTTGACCACAACCGGGGTACGTTCATGGTGAAGTTGCGGTTCCGTCGGAACCGGTGAG
GGTTTGTATTATAATGTAATGGTAGAAAGTAGAGGTGGTGAGCGAGGAAGATGGTTTGATGAGAC
GTGGTAGATGCTTGATGAGACGTGGTAGATGCTTGATGAGACGTGGTAGATGGTTTGATGAGACG
TGGTAGATGGTATGATGGTAGAGATGTTGGTGGTTGGCGACGATTGTAGACGACCGTAGATGGTT
TGATGGTAGGGGTGTCCATGTAAATCAGTGTTAGTTCTTGGAAATTGCGGGATTCACTCATTTTC
TGGAGCAGTCGAGATACACGGTTTCATTTTTCATCTTATTCGTATTTGTTTGTCTCGTTGAAACC
CGTGTGTCTACTGCTCATGTTCTCCTCTCGTTTGATTTGTATTCTGGTTCATCGTCTTTTCTTGT
TTTGTTTAATTCACCATCTTGTCTATTGTCAACTTGTTCGTCTTG
Right flanking sequence: Indices 59538 -- 60037
GTCGTCCTGTGATTCCTCCAGTCATACTGTGATGATAACTATGAATACCGTTGCATTTTTATCGA
CCAACTTTACACGGTAGGTCACATGAAACCAAAACGGTTGTCTTTGTGTCCGATTACATCCTGAA
AACGAACGATTCACTCGTCCCGTTTCAGAGACTCCGGTGTCATTTGCAGCCAGCTCAGTTATGTC
CGACGGCTCATCGTCCGATGGCCACAGATCTGCTGTCATTTCTCCGGTGTCTGCTTTGGGCCAGA
TTTGCATGTGGCTGGTCAGATGGCTGCAATCGGCCCAGATTAACTCCGGTTGCTTTAGGTTACCT
CCGCTCACAACGGCCACCGAAGGTTCCTCTCTTTATCTACGCCCAGATCCCTTCCATTATTATCG
GATTGGCGATAGGCGACCATTGTAACCGACGGTAGCACCGCGCAGACGGAACCGTCCCCAGGCAG
CAGCAATCAAATGCAGCGAACCCACTCCGGACGCTAAAATCATCC
Found at i:63438 original size:11 final size:11
Alignment explanation
Indices: 63422--63448 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
63412 TGGTGCAGTG
63422 GGTGCGGTTGA
1 GGTGCGGTTGA
63433 GGTGCGGTTGA
1 GGTGCGGTTGA
63444 GGTGC
1 GGTGC
63449 AGTGGCGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.11, G:0.56, T:0.26
Consensus pattern (11 bp):
GGTGCGGTTGA
Left flanking sequence: Indices 62922 -- 63421
ATCACCACCTTCCCCTTGACCGACTGGATGGGGTCCACCACCACGGCCACGGCCCGTTTGTTCAA
CTGTTCGAACAGCTGCTGGGTCAGCACGTCCACCGACAGCAACCAGCACCCGAAACCCGGGTGCG
AGTGGTACCAGCCAACCACCATCTGGTCGCGCCCGGTCTGACGCAACATGTCCATCATTTTCGTC
TGGAACACGTCGTCGACCGCCTCCACCGACACTCCGGTACCCAGCTGGGGCATGGCAAACACGTC
AATGACGTGGATGGTGAAGTCGTCCACAAACTCGCCCAACATGAGGCCCATCACCTCCATGGGCA
CACCGGCACGCGCGTGTTTGAGCATTTTGAGGAGGGCCAACAGGGAAATGTAGACGGTTTCCGCG
TTGTCAATGGCGGGTCCGTCCGTCTGCGGCGGCGCAGCGCCGCCAAGAGTGGCTCCCAGCCCTAA
GAGCCGCTGTAATCGTTCCATGGTTGGTGTGGGTGTGGTGCAGTG
Right flanking sequence: Indices 63449 -- 63948
AGTGGCGTTGCTGCACGGGTGTTGCCACTGGATCGGTGGGGACCACGGGTGGCGGGGGATGGAGG
GGTGGTTTAGGTGGGGGTGAGGATGAGGTGGAGGCCGTGGCGGTGGGTTGGTGGTGATTTTTCAG
TCCATTGAGTGGTGGGTTGGTTTGTTGTATTTGGTGGCAAATTTAGTGGAGGCTACCAGGAGAGA
GAGATTGGAACGGAGGGAAACCAGTGGGGATATAGGGGTTTTGAACGTAGGTGTTTCTGAGTTGC
AAGCTAGCTACTGTGATGGCTGGTAGGTTCAAAGTGTGTTGCTTTAGGTGTAGCACCACGTAAGG
TTTCGTGGTCCAGTCGCTGAAAAATATGGTTTAAGCTAAGTTTACTAGCGAAGTTGTTGAGTCAG
TTGAAACAAGAAGCCAAGACCAAACGAACTGTACCCCTCTGCTTCTTGTTCGTCATCATGGGCAC
ACTCCCGTCGACCCACTACACTCGTAAATACGCCCCAATCCGTCA
Found at i:66151 original size:34 final size:32
Alignment explanation
Indices: 66109--66207 Score: 116
Period size: 34 Copynumber: 3.1 Consensus size: 32
66099 GGATGTGGAA
66109 TGTGTGTGGAGAGAATAAGCTAGGGTAGAATTGG
1 TGTGTGTGG-GAGAAT-AGCTAGGGTAGAATTGG
*
66143 TGTGTGTGGG-G---AGCTAAGGTAGAATTGG
1 TGTGTGTGGGAGAATAGCTAGGGTAGAATTGG
*
66171 TGTGTGGTGGGAGAATGGGCTAGGGTAGAATTGG
1 TGTGT-GTGGGAGAAT-AGCTAGGGTAGAATTGG
66205 TGT
1 TGT
66208 ATGTTCGGTG
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
28 21 0.38
29 5 0.09
30 1 0.02
32 1 0.02
33 1 0.02
34 27 0.48
ACGTcount: A:0.23, C:0.03, G:0.45, T:0.28
Consensus pattern (32 bp):
TGTGTGTGGGAGAATAGCTAGGGTAGAATTGG
Left flanking sequence: Indices 65609 -- 66108
CTCATCGCCAACTACATCAAGAACGGGCAGATTGTGCCCCAGGAGATCACGGTGGCGCTTTTGCA
GCAGGCGATCCGCGAGAACCACGCCAAGGGCAACCAGAAGTTCCTCGTGGACGGGTTCCCGCGCA
AGATGGACCAGGCGATCACCTTCGAGAACGACATTGTCCAGCTGAAGCTCACGATTTTCTTTGAG
TGTCCCGAGCAGGTGATGTTGCAGCGGTTGATGGAGCGGGGCAAGACGCTGGGCCGTGCTGACGA
CAACGTCGAGCTGATCAAGAAGCGGTTCCAGGTGTTTGTCGACACCCTGATGCCCGTGGTCGACT
ACTTTGACAAACAGGGCCGTGTGGTCAAGGTCCGGTGCGACCTGACCATTGACGACGTGAACAAG
CAGTTGGTGACGGCGCTCAAGCAGCGGGGTGTGGTTAACTAGAGAAACAGGTCTTTTTATAGTGT
TGTCGTAGAATAAATGCGGCATTGGAGTGAAGGGGGGATGTGGAA
Right flanking sequence: Indices 66208 -- 66707
ATGTTCGGTGTTTCACTGGAGTTTGGGACTAGAGAGTTTAAGCGTCGTCGTTGGCGGTGTTACCG
GTTGGGTTAGTCTTTTACCTGGTACCTAGCTGTAGAAAGAGGCTTGGGTCTACAACTTGTTCTAG
TCCTTTGACGACGGTCTCATTCCCGATTAGGTGTGGGTGGCGTGGTGTAGACGAGAATAGACGAA
AGCTTGTAAGAGACGACTTATACGAGACTAGGGTCATTCAAAATCACCCAAGTGGGATGCTAGCT
GGTTGTTTGAACCAATTGCTGAGTCCAGGCATTAGTGGCGTTGGATACATAAGACGTGTATTTCG
TACCGAGTTATGAAGAGCCAGCTCAAAAGACAAACATGACTCAAGACAAGCATGAACAAACCTCC
ACCCACGCAATTGACCTGCCATCTGACCCACCACCAGCTCTTCGCCCCAGCTCTTCGCCTTCGCC
ACCGCCATCACCTTACCACCTCCTGCACACACCCTCAACCGCACC
Found at i:66158 original size:28 final size:31
Alignment explanation
Indices: 66125--66207 Score: 109
Period size: 28 Copynumber: 2.7 Consensus size: 31
66115 TGGAGAGAAT
66125 AAGCTAGGGTAGAATTGGTGTGT-GTGGG-G
1 AAGCTAGGGTAGAATTGGTGTGTGGTGGGAG
*
66154 -AGCTAAGGTAGAATTGGTGTGTGGTGGGAG
1 AAGCTAGGGTAGAATTGGTGTGTGGTGGGAG
66184 AATGGGCTAGGGTAGAATTGGTGT
1 AA---GCTAGGGTAGAATTGGTGT
66208 ATGTTCGGTG
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
28 21 0.46
29 5 0.11
30 1 0.02
31 1 0.02
34 18 0.39
ACGTcount: A:0.23, C:0.04, G:0.46, T:0.28
Consensus pattern (31 bp):
AAGCTAGGGTAGAATTGGTGTGTGGTGGGAG
Left flanking sequence: Indices 65625 -- 66124
TCAAGAACGGGCAGATTGTGCCCCAGGAGATCACGGTGGCGCTTTTGCAGCAGGCGATCCGCGAG
AACCACGCCAAGGGCAACCAGAAGTTCCTCGTGGACGGGTTCCCGCGCAAGATGGACCAGGCGAT
CACCTTCGAGAACGACATTGTCCAGCTGAAGCTCACGATTTTCTTTGAGTGTCCCGAGCAGGTGA
TGTTGCAGCGGTTGATGGAGCGGGGCAAGACGCTGGGCCGTGCTGACGACAACGTCGAGCTGATC
AAGAAGCGGTTCCAGGTGTTTGTCGACACCCTGATGCCCGTGGTCGACTACTTTGACAAACAGGG
CCGTGTGGTCAAGGTCCGGTGCGACCTGACCATTGACGACGTGAACAAGCAGTTGGTGACGGCGC
TCAAGCAGCGGGGTGTGGTTAACTAGAGAAACAGGTCTTTTTATAGTGTTGTCGTAGAATAAATG
CGGCATTGGAGTGAAGGGGGGATGTGGAATGTGTGTGGAGAGAAT
Right flanking sequence: Indices 66208 -- 66707
ATGTTCGGTGTTTCACTGGAGTTTGGGACTAGAGAGTTTAAGCGTCGTCGTTGGCGGTGTTACCG
GTTGGGTTAGTCTTTTACCTGGTACCTAGCTGTAGAAAGAGGCTTGGGTCTACAACTTGTTCTAG
TCCTTTGACGACGGTCTCATTCCCGATTAGGTGTGGGTGGCGTGGTGTAGACGAGAATAGACGAA
AGCTTGTAAGAGACGACTTATACGAGACTAGGGTCATTCAAAATCACCCAAGTGGGATGCTAGCT
GGTTGTTTGAACCAATTGCTGAGTCCAGGCATTAGTGGCGTTGGATACATAAGACGTGTATTTCG
TACCGAGTTATGAAGAGCCAGCTCAAAAGACAAACATGACTCAAGACAAGCATGAACAAACCTCC
ACCCACGCAATTGACCTGCCATCTGACCCACCACCAGCTCTTCGCCCCAGCTCTTCGCCTTCGCC
ACCGCCATCACCTTACCACCTCCTGCACACACCCTCAACCGCACC
Found at i:66649 original size:13 final size:13
Alignment explanation
Indices: 66631--66656 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66621 TGACCCACCA
66631 CCAGCTCTTCGCC
1 CCAGCTCTTCGCC
66644 CCAGCTCTTCGCC
1 CCAGCTCTTCGCC
66657 TTCGCCACCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.54, G:0.15, T:0.23
Consensus pattern (13 bp):
CCAGCTCTTCGCC
Left flanking sequence: Indices 66131 -- 66630
GGGTAGAATTGGTGTGTGTGGGGAGCTAAGGTAGAATTGGTGTGTGGTGGGAGAATGGGCTAGGG
TAGAATTGGTGTATGTTCGGTGTTTCACTGGAGTTTGGGACTAGAGAGTTTAAGCGTCGTCGTTG
GCGGTGTTACCGGTTGGGTTAGTCTTTTACCTGGTACCTAGCTGTAGAAAGAGGCTTGGGTCTAC
AACTTGTTCTAGTCCTTTGACGACGGTCTCATTCCCGATTAGGTGTGGGTGGCGTGGTGTAGACG
AGAATAGACGAAAGCTTGTAAGAGACGACTTATACGAGACTAGGGTCATTCAAAATCACCCAAGT
GGGATGCTAGCTGGTTGTTTGAACCAATTGCTGAGTCCAGGCATTAGTGGCGTTGGATACATAAG
ACGTGTATTTCGTACCGAGTTATGAAGAGCCAGCTCAAAAGACAAACATGACTCAAGACAAGCAT
GAACAAACCTCCACCCACGCAATTGACCTGCCATCTGACCCACCA
Right flanking sequence: Indices 66657 -- 67156
TTCGCCACCGCCATCACCTTACCACCTCCTGCACACACCCTCAACCGCACCCACCAAAGACCCCC
CCATTACAAAGCCACCTACCACCACTACACACCATGTCTACCACGGGACTCCCCTCTGGCTGGGC
CATCAAGATGTCCCGGCTGCACAACCGCGAGTATTTCTACAACCAAGGCACCGGCGAGTCCCTGT
GGGACCCCCCCTTTGGTGCGGACGAGGACAAGCTCAAGGAGTACTTGCGCCAGTTCAAGACCAAC
GGCAACAAGCCGGTGGTGTCCGACGGCAAGGTGCGTGCGGCCCACCTCTTGGTGAAGCACGCCCA
GTCCCGCAGACCCAAGCTGTGGAAGCTGCCCGAGGGGATCACCCTCTCGCGGGACGAGGCGATCC
AGAAGTTGAGAGGGTTTCAAAAGCGGATTTTGAACGGTGAGATCAAGTTGGAGGAGTTGGCGGAG
ACCGAGTCTGACTGCCTGCTGCACGACAAGGGTGGCGACTTGGGC
Found at i:67393 original size:14 final size:14
Alignment explanation
Indices: 67371--67418 Score: 78
Period size: 14 Copynumber: 3.4 Consensus size: 14
67361 TAGTGGGTGT
*
67371 TTGGTAAGTCTGTG
1 TTGGCAAGTCTGTG
67385 TTGGCAAGTCTGTG
1 TTGGCAAGTCTGTG
*
67399 TCGGCAAGTCTGTG
1 TTGGCAAGTCTGTG
67413 TTGGCA
1 TTGGCA
67419 TTGACGGTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.15, C:0.15, G:0.35, T:0.35
Consensus pattern (14 bp):
TTGGCAAGTCTGTG
Left flanking sequence: Indices 66871 -- 67370
GGACGAGGACAAGCTCAAGGAGTACTTGCGCCAGTTCAAGACCAACGGCAACAAGCCGGTGGTGT
CCGACGGCAAGGTGCGTGCGGCCCACCTCTTGGTGAAGCACGCCCAGTCCCGCAGACCCAAGCTG
TGGAAGCTGCCCGAGGGGATCACCCTCTCGCGGGACGAGGCGATCCAGAAGTTGAGAGGGTTTCA
AAAGCGGATTTTGAACGGTGAGATCAAGTTGGAGGAGTTGGCGGAGACCGAGTCTGACTGCCTGC
TGCACGACAAGGGTGGCGACTTGGGCTTCTTTGCCCGCGGCCAGATGCAGCCGCTGTTTGAGGAG
GCGGCGTTTGGGTTGAACGTTGGCGAGATCAGTGACATTATTGAGACGGACCTGGGGGTGCACCT
CATCCACCGTACGGGTTAGAGTGTGAATAGTAATAGAGAAAGGAAATGAGTGTGAGAGGGTTGTA
GAAGAGGGTAGATTTAAGGACTGGCGGTGGAACTGTAGTGGGTGT
Right flanking sequence: Indices 67419 -- 67918
TTGACGGTTCAGGCTGGTAGCTAGGACCCTGAAGGGGTAGAAGAGGATGGGGCCAGCGTGGGGCT
GGGCTGGACTCGTTGGCGACGTGCTTACAAATGATGGTAGCTGATCATGGAAACTGGGTTCAACC
GAGGTTACACTACAATTTAAAGTGGCTAATTCTTGCTTCTTTGTAGCGTTTACCAGGCGTTTTGT
CTCACAACTCAACCTTGCCTCCGAGGTCCTCGTCGTCCTCGCACTTGGTGATGGTCCCCGTTAGC
CCTGGTTAGAGTTGCCTACACCCAGCGAACCTACAGTTTCCTCAGAATCTGTGCACTGAACCACT
CCAGGTGTAAGACTTTCCCCACTTTCCGTAAGCCCTTCAAGCGAACCCGCCAGGTTTGTGAGACA
TAGCCCTATTTAAGCCTCGAAAGTACGAGTGACCTCCGATCGAGCTGCCAAATAATATGCCTCCT
CAAGATCCGCGATCAGACCGCATCTCGATCCCTGATTTCATATAC
Found at i:69298 original size:36 final size:36
Alignment explanation
Indices: 69249--69469 Score: 274
Period size: 36 Copynumber: 6.3 Consensus size: 36
69239 ATATGCATTC
* * ** *
69249 TACTCTGCTAAATTGAATGCAGTCTACTCTGCCCAA
1 TACTCTGCAAAATTGTATGCAGTAAACTCTGCCAAA
*
69285 TACTCTGCAAAATTGTATGCAATAAACTCTGCCAAA
1 TACTCTGCAAAATTGTATGCAGTAAACTCTGCCAAA
69321 TACTCTGC-AAATTGTATGCAGTAAACTCTGCCAAA
1 TACTCTGCAAAATTGTATGCAGTAAACTCTGCCAAA
69356 TACTCTGCAAAATTGTATGCAGTAAACTCTG-CAAA
1 TACTCTGCAAAATTGTATGCAGTAAACTCTGCCAAA
*
69391 -A---TACAAAATTGTATGCAGTAAACTCTGCCAAA
1 TACTCTGCAAAATTGTATGCAGTAAACTCTGCCAAA
**** ***
69423 TACTCTGCTGGTTTGTATGCAGGCTACTCTGCCAAA
1 TACTCTGCAAAATTGTATGCAGTAAACTCTGCCAAA
69459 TACTCTGCAAA
1 TACTCTGCAAA
69470 TTTACATGCA
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
31 25 0.16
32 4 0.03
33 1 0.01
34 1 0.01
35 38 0.24
36 91 0.57
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (36 bp):
TACTCTGCAAAATTGTATGCAGTAAACTCTGCCAAA
Left flanking sequence: Indices 68749 -- 69248
CCTAGTATTGGTCTGGCCAGCCAATACTAGGGGTCTCCTGGACAGCCCTGGGTCCCCGTCAGTTG
CTAACACTTCCCCGATGGTCGCGTGGCCTGGAGGTTTGAAGTGGGCAATCTGGCTCCCAGGGTGG
GTGCTACGGCACCGCTGAGTCTGTGGTAACGGCGTCTGGAGGGAGCAACCTAGCTCTCTCTCGCG
GAATCAAAGGAACTTGCTCCCGAAGCAGGGGTTAGGGGAGTGTCTGGTTGCCGGGTTACCCAGCA
AGTCTATATAGGTGTAGGCACACTGTACTATTATTCTAGCTGGGGCCCCCGGGCCAACAACCAGA
CCGGGTTTATAATTTAAAAATAATATATGCACGAGATGCATTAGCCTGCATGGCTCTCATGCAAG
CTATGCACCTCGTATAATACACAGAATACGAAACCTACGGCACCGCCGTTTGTAGATCAGTCACG
TGATTGTTTTTAGGTGTAGGAAACTCTGCTCCATTATATGCATTC
Right flanking sequence: Indices 69470 -- 69969
TTTACATGCAGTTTACTCTGCTGAATTTAAGTCTACTCTGCTAAAATGCGCTTATATACAGTTTA
ATCTGCTAATAAATATGTGTACTCTGCTGAATTGTATCTCTGTGCAGTGAACTCTGCTGAAAAGC
GGATTTTCCTCTGCAAAACAGCTTGTGTGCAGTCGTCTCGGAAAATAATCCTTGTGTAGCAGACA
CAGCTCGCAAATAGCTTCACGTGCAGCATTTCTCTCGTAACTCTCTCGTAACTGCCAGTGCTTTC
TCAACGTCGTCCACAGGTCAACACACGACACAACCCCATCAAAAAGGCCTGATATGGGCAGTCCA
TGGCATAGATGGTGTTTCTGATTGGCTCTAGCTGGCATGGTGTCTTCAGCTGACTTGTTGCGGTC
ATTTTGATTGAGCCAAAACGTGTTAGTCATTAGATGGCTCGTGAACTCCGGAACAAAGGCGATCA
AAGGCTTTAGGAGCCGTCAATTCGGCTGGCCTGGTTGGCAACAAC
Found at i:69461 original size:67 final size:67
Alignment explanation
Indices: 69258--69430 Score: 229
Period size: 71 Copynumber: 2.5 Consensus size: 67
69248 CTACTCTGCT
* ** * ** *
69258 AAATTGAATGCAGTCTACTCTGCCCAATACTCTGCAAAATTGTATGCAATAAACTCTGCCAAATA
1 AAATTGTATGCAGTAAACTCTGCCAAATACTCTGCAAAATTGTATGCAGGAAACTCTGCAAAATA
*
69323 CTCTGC
66 --C--A
*
69329 AAATTGTATGCAGTAAACTCTGCCAAATACTCTGCAAAATTGTATGCAGTAAACTCTGCAAAATA
1 AAATTGTATGCAGTAAACTCTGCCAAATACTCTGCAAAATTGTATGCAGGAAACTCTGCAAAATA
69394 CA
66 CA
69396 AAATTGTATGCAGTAAACTCTGCCAAATACTCTGC
1 AAATTGTATGCAGTAAACTCTGCCAAATACTCTGC
69431 TGGTTTGTAT
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
67 35 0.37
69 1 0.01
71 59 0.62
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (67 bp):
AAATTGTATGCAGTAAACTCTGCCAAATACTCTGCAAAATTGTATGCAGGAAACTCTGCAAAATA
CA
Left flanking sequence: Indices 68758 -- 69257
GGTCTGGCCAGCCAATACTAGGGGTCTCCTGGACAGCCCTGGGTCCCCGTCAGTTGCTAACACTT
CCCCGATGGTCGCGTGGCCTGGAGGTTTGAAGTGGGCAATCTGGCTCCCAGGGTGGGTGCTACGG
CACCGCTGAGTCTGTGGTAACGGCGTCTGGAGGGAGCAACCTAGCTCTCTCTCGCGGAATCAAAG
GAACTTGCTCCCGAAGCAGGGGTTAGGGGAGTGTCTGGTTGCCGGGTTACCCAGCAAGTCTATAT
AGGTGTAGGCACACTGTACTATTATTCTAGCTGGGGCCCCCGGGCCAACAACCAGACCGGGTTTA
TAATTTAAAAATAATATATGCACGAGATGCATTAGCCTGCATGGCTCTCATGCAAGCTATGCACC
TCGTATAATACACAGAATACGAAACCTACGGCACCGCCGTTTGTAGATCAGTCACGTGATTGTTT
TTAGGTGTAGGAAACTCTGCTCCATTATATGCATTCTACTCTGCT
Right flanking sequence: Indices 69431 -- 69930
TGGTTTGTATGCAGGCTACTCTGCCAAATACTCTGCAAATTTACATGCAGTTTACTCTGCTGAAT
TTAAGTCTACTCTGCTAAAATGCGCTTATATACAGTTTAATCTGCTAATAAATATGTGTACTCTG
CTGAATTGTATCTCTGTGCAGTGAACTCTGCTGAAAAGCGGATTTTCCTCTGCAAAACAGCTTGT
GTGCAGTCGTCTCGGAAAATAATCCTTGTGTAGCAGACACAGCTCGCAAATAGCTTCACGTGCAG
CATTTCTCTCGTAACTCTCTCGTAACTGCCAGTGCTTTCTCAACGTCGTCCACAGGTCAACACAC
GACACAACCCCATCAAAAAGGCCTGATATGGGCAGTCCATGGCATAGATGGTGTTTCTGATTGGC
TCTAGCTGGCATGGTGTCTTCAGCTGACTTGTTGCGGTCATTTTGATTGAGCCAAAACGTGTTAG
TCATTAGATGGCTCGTGAACTCCGGAACAAAGGCGATCAAAGGCT
Done.