sallet_2.scaffold.fasta.s16.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold35
Parameters: 2 7 7 80 10 50 500
Length:  65045

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313--358	12	4.2	11	86	5	51	6	0	54	39	1.26
313--371	10	5.5	10	79	16	57	6	0	52	40	1.28
1158--1190	17	1.9	17	93	0	57	15	15	30	39	1.88
1312--1339	14	2.0	14	100	0	56	35	42	7	14	1.73
1543--1579	5	7.4	5	93	0	65	0	59	0	40	0.97
2911--2970	14	4.5	14	74	18	56	33	15	38	13	1.86
3367--3404	18	2.1	18	90	0	58	47	21	13	18	1.82
6809--6854	24	2.0	23	86	4	65	19	30	23	26	1.98
10730--10790	20	3.0	20	87	0	95	22	26	11	39	1.88
14611--14679	30	2.3	31	89	2	104	18	17	37	26	1.93
14810--14883	23	3.2	23	96	0	130	18	13	33	33	1.90
14957--14997	20	2.0	20	95	0	73	29	24	7	39	1.82
16586--16625	11	3.6	11	96	0	71	37	7	40	15	1.75
16586--16638	22	2.4	22	87	0	70	35	7	39	16	1.78
24200--24232	12	2.6	13	95	4	59	18	72	9	0	1.10
24250--24294	21	2.0	23	87	8	67	24	66	6	2	1.27
25239--25283	2	22.5	2	81	0	54	46	2	51	0	1.13
25232--25272	18	2.3	18	86	0	55	43	0	53	2	1.13
25294--25370	37	2.1	37	85	0	100	16	12	28	41	1.86
25449--25495	15	3.2	15	90	3	78	34	0	48	17	1.47
25871--25898	12	2.3	12	100	0	56	57	28	0	14	1.38
33210--33238	10	2.7	11	94	5	51	0	0	62	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33285--33322	11	3.4	11	88	3	58	55	0	36	7	1.29
34229--34267	18	2.3	16	86	8	51	35	48	0	15	1.45
34317--34364	18	2.6	18	86	3	60	25	56	2	16	1.51
37015--37056	21	2.0	21	81	9	50	16	40	30	11	1.85
38754--38788	12	2.9	12	91	0	52	17	28	37	17	1.92
38780--38818	9	4.3	9	100	0	78	0	33	43	23	1.54
39681--39705	9	2.8	9	100	0	50	48	12	32	8	1.69
45069--45139	23	3.2	22	73	15	74	1	36	9	52	1.44
47601--47639	15	2.7	15	92	4	62	28	25	20	25	1.99
48468--48510	21	2.0	21	90	0	68	9	18	53	18	1.70
48960--49618	123	5.2	122	68	17	440	24	22	32	20	1.98
48945--49749	261	3.1	260	89	1	1242	23	22	32	20	1.98
49584--50225	138	4.8	138	78	8	672	21	24	32	21	1.98
49323--50225	399	2.3	399	90	0	1448	22	23	33	21	1.98
49722--50226	261	1.9	261	82	3	622	21	24	32	20	1.98
50657--52816	147	14.8	145	82	4	1965	26	24	28	20	1.99
50667--52816	294	7.4	292	83	4	2308	26	24	28	20	1.99
50650--52816	435	5.0	435	83	4	2407	26	24	28	20	1.99
53771--55609	459	4.0	459	96	0	3291	26	24	28	20	1.99
59211--59317	36	3.0	36	83	2	99	27	20	38	14	1.91

Tables:   1

The End!