Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold35
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 65045
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Found at i:330 original size:12 final size:11
Alignment explanation
Indices: 313--358 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
303 AGGTGTAGTT
313 TGGTGTTAGAGG
1 TGGTGTT-GAGG
*
325 TGGTGTTGGATG
1 TGGTGTT-GAGG
337 TGGTGTTG-GG
1 TGGTGTTGAGG
347 TGGTGTTG-GG
1 TGGTGTTGAGG
357 TG
1 TG
359 TTAGTTGGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 13 0.42
11 1 0.03
12 17 0.55
ACGTcount: A:0.07, C:0.00, G:0.54, T:0.39
Consensus pattern (11 bp):
TGGTGTTGAGG
Left flanking sequence: Indices 1 -- 312
AGGGTGTTGCTCTTGGTGTACCCCATTAGTGATGTGATGCCCGCGCGTAAACAAAAATGGGGGAG
GGGGAGGAGGGAGTGCGATGGGAGAGGAGGGGGAGGAGAAGAAAAAGAGGGGGGAAAGTGGGGGA
AGGAGAAAGGAGGGGGAGAGGAGGGAGTACGCGGAGAGGAGGTTGGGGCTTAGGTGGTGGTTATG
GCAATTGAGTTGGTACGGGTGGTGTGTGTGTTTGTGTGAGTTTTTCACTAGATCTGTGCGAGTGT
AGTAGAGATGGAGGCACAGGAGGGCATTAAAATGAGGAAGTGAGGTGTAGTT
Right flanking sequence: Indices 359 -- 858
TTAGTTGGTGGTGGGATAGTGGTGAAATTTGTGTAAGTTGGTTGACTGAGATTATGGTTGTTTCA
TAACACCATGATTCAATCACTACATCAGAAAGGGTACACTGTTTATTAACCGAAATAGACACAGG
CCAACACGGACTGTGTCGTAAAGTAACGTCACGTGTTTGTGACCTAGAAGGGCGGATCACCCAGT
CAGCGTCAGCGCCATAACGCACTGGTCAACATTGTGGCCCACTGCATAAGCTCAATTGATTAGTT
TCTGGGTTTCAGAGTAGAGGATTTCCACACTTAAAAAGTGATAGCTTTAACGGGATTTAGTAAAC
CTTTTATACTTTGAAATTGACCATCACCGAGGCTGAGAGCCCCCGGGAAAGTCTCTCGATTGGGA
TACCCGGGCTTAGCGTACCCCACGCTGGCTGACCAGAGCATTGTGCCGCCAAGCCCAGTTTGACG
TGCTTGATTGGCTCCACCGTCTAAGCCGAGTACTTGGGACTCGAA
Found at i:351 original size:10 final size:10
Alignment explanation
Indices: 313--371 Score: 57
Period size: 10 Copynumber: 5.5 Consensus size: 10
303 AGGTGTAGTT
313 TGGTGTTAGAGG
1 TGGTGTT-G-GG
325 TGGTGTTGGATG
1 TGGTGTTGG--G
337 TGGTGTTGGG
1 TGGTGTTGGG
347 TGGTGTTGGG
1 TGGTGTTGGG
*
357 TGTTAGTT-GG
1 TGGT-GTTGGG
367 TGGTG
1 TGGTG
372 GGATAGTGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
9 1 0.02
10 20 0.48
11 4 0.10
12 17 0.40
ACGTcount: A:0.07, C:0.00, G:0.53, T:0.41
Consensus pattern (10 bp):
TGGTGTTGGG
Left flanking sequence: Indices 1 -- 312
AGGGTGTTGCTCTTGGTGTACCCCATTAGTGATGTGATGCCCGCGCGTAAACAAAAATGGGGGAG
GGGGAGGAGGGAGTGCGATGGGAGAGGAGGGGGAGGAGAAGAAAAAGAGGGGGGAAAGTGGGGGA
AGGAGAAAGGAGGGGGAGAGGAGGGAGTACGCGGAGAGGAGGTTGGGGCTTAGGTGGTGGTTATG
GCAATTGAGTTGGTACGGGTGGTGTGTGTGTTTGTGTGAGTTTTTCACTAGATCTGTGCGAGTGT
AGTAGAGATGGAGGCACAGGAGGGCATTAAAATGAGGAAGTGAGGTGTAGTT
Right flanking sequence: Indices 372 -- 871
GGATAGTGGTGAAATTTGTGTAAGTTGGTTGACTGAGATTATGGTTGTTTCATAACACCATGATT
CAATCACTACATCAGAAAGGGTACACTGTTTATTAACCGAAATAGACACAGGCCAACACGGACTG
TGTCGTAAAGTAACGTCACGTGTTTGTGACCTAGAAGGGCGGATCACCCAGTCAGCGTCAGCGCC
ATAACGCACTGGTCAACATTGTGGCCCACTGCATAAGCTCAATTGATTAGTTTCTGGGTTTCAGA
GTAGAGGATTTCCACACTTAAAAAGTGATAGCTTTAACGGGATTTAGTAAACCTTTTATACTTTG
AAATTGACCATCACCGAGGCTGAGAGCCCCCGGGAAAGTCTCTCGATTGGGATACCCGGGCTTAG
CGTACCCCACGCTGGCTGACCAGAGCATTGTGCCGCCAAGCCCAGTTTGACGTGCTTGATTGGCT
CCACCGTCTAAGCCGAGTACTTGGGACTCGAATTTCAAAGCGTAG
Found at i:1183 original size:17 final size:17
Alignment explanation
Indices: 1158--1190 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1148 ACAGTGGCTG
*
1158 GTGTTACAGTTGGTCTC
1 GTGTAACAGTTGGTCTC
1175 GTGTAACAGTTGGTCT
1 GTGTAACAGTTGGTCT
1191 ACATTCTCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.39
Consensus pattern (17 bp):
GTGTAACAGTTGGTCTC
Left flanking sequence: Indices 658 -- 1157
GATAGCTTTAACGGGATTTAGTAAACCTTTTATACTTTGAAATTGACCATCACCGAGGCTGAGAG
CCCCCGGGAAAGTCTCTCGATTGGGATACCCGGGCTTAGCGTACCCCACGCTGGCTGACCAGAGC
ATTGTGCCGCCAAGCCCAGTTTGACGTGCTTGATTGGCTCCACCGTCTAAGCCGAGTACTTGGGA
CTCGAATTTCAAAGCGTAGTAATAACAAGAAGACATTCGGATTTTTGAATACCTCGGATTCACAA
ATAGGTTTTCAGTCTATTCCCACAACCCCTCCCTGCGTCAGGTTGATTTTAGCGTCTCACTGTTC
GTTTCTACGGACCCAGTCTAGACATTAATAATACCACATTTCTAAGCCCTGAGAGTTAGCCTATT
CTAGATCGCTCTGGGAGATCCGCTTATTCAGGTCATTCAACCCTGGAGGCGGCAAGTGGTGCTCT
TCAACACGTTTCAGCAATCATACACACTATTCAACACAGTGGCTG
Right flanking sequence: Indices 1191 -- 1690
ACATTCTCCGTTGTGATCACTCACGCGTTGGCTTACGAGTGACTACTGGCTCAAACAAGTCAGGT
CAATTGGACCAATAAGCCATTGAGCCGTCAAAACCACCATACAATGCACCCAGCATTTCACACAC
ACCAGTTCACACACACCAGCTGAGCTACTACTACGTTTCTCGCTACGCTATTCTTCTCTACTTCT
CGCTATCATGATGCTTCTCACTACGCGCAGTATGCACAATCCATCCCAAAGCCATACCACCACTA
AAAATACCAAACACCAAACACCCCAAATTACCCAACCACTTCTTCCCACCTTCCCTCTTCCCTTC
TTCCCCCTTCTTCTTTCTCTACTTTCTCCTTCCCTTCCCTTTCCTTCCCTTCCCTTCCCTTCCCC
ACCTCCCTACCACCACCTTTTTTTCGTGCGGCTCACCACCACCACCACCACCCCATGTCCTCGGT
CGTCTACTACCAGTTCCTCCACCAGAAAACCCGGCTGGTGATCCA
Found at i:1331 original size:14 final size:14
Alignment explanation
Indices: 1312--1339 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1302 CACCCAGCAT
1312 TTCACACACACCAG
1 TTCACACACACCAG
1326 TTCACACACACCAG
1 TTCACACACACCAG
1340 CTGAGCTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.43, G:0.07, T:0.14
Consensus pattern (14 bp):
TTCACACACACCAG
Left flanking sequence: Indices 812 -- 1311
CGTGCTTGATTGGCTCCACCGTCTAAGCCGAGTACTTGGGACTCGAATTTCAAAGCGTAGTAATA
ACAAGAAGACATTCGGATTTTTGAATACCTCGGATTCACAAATAGGTTTTCAGTCTATTCCCACA
ACCCCTCCCTGCGTCAGGTTGATTTTAGCGTCTCACTGTTCGTTTCTACGGACCCAGTCTAGACA
TTAATAATACCACATTTCTAAGCCCTGAGAGTTAGCCTATTCTAGATCGCTCTGGGAGATCCGCT
TATTCAGGTCATTCAACCCTGGAGGCGGCAAGTGGTGCTCTTCAACACGTTTCAGCAATCATACA
CACTATTCAACACAGTGGCTGGTGTTACAGTTGGTCTCGTGTAACAGTTGGTCTACATTCTCCGT
TGTGATCACTCACGCGTTGGCTTACGAGTGACTACTGGCTCAAACAAGTCAGGTCAATTGGACCA
ATAAGCCATTGAGCCGTCAAAACCACCATACAATGCACCCAGCAT
Right flanking sequence: Indices 1340 -- 1839
CTGAGCTACTACTACGTTTCTCGCTACGCTATTCTTCTCTACTTCTCGCTATCATGATGCTTCTC
ACTACGCGCAGTATGCACAATCCATCCCAAAGCCATACCACCACTAAAAATACCAAACACCAAAC
ACCCCAAATTACCCAACCACTTCTTCCCACCTTCCCTCTTCCCTTCTTCCCCCTTCTTCTTTCTC
TACTTTCTCCTTCCCTTCCCTTTCCTTCCCTTCCCTTCCCTTCCCCACCTCCCTACCACCACCTT
TTTTTCGTGCGGCTCACCACCACCACCACCACCCCATGTCCTCGGTCGTCTACTACCAGTTCCTC
CACCAGAAAACCCGGCTGGTGATCCACTTCGACGGCACCCTGATTCTGGTGTTTGACCTCAAGCG
CGAGATCATCACCCAAAACCAGCTCGGCACCGGGGTCGACTTCAACCTCCGCCTCTACCACCTGG
AAAACCCGGCCCTCGAGTACGAGCTCGACACCGATGTGGTGCCGC
Found at i:1553 original size:5 final size:5
Alignment explanation
Indices: 1543--1579 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
1533 TCTACTTTCT
*
1543 CCTTC CCTTC CCTTT CCTTC CCTTC CCTTC CCTTC CC
1 CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CC
1580 CACCTCCCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (5 bp):
CCTTC
Left flanking sequence: Indices 1043 -- 1542
CTATTCTAGATCGCTCTGGGAGATCCGCTTATTCAGGTCATTCAACCCTGGAGGCGGCAAGTGGT
GCTCTTCAACACGTTTCAGCAATCATACACACTATTCAACACAGTGGCTGGTGTTACAGTTGGTC
TCGTGTAACAGTTGGTCTACATTCTCCGTTGTGATCACTCACGCGTTGGCTTACGAGTGACTACT
GGCTCAAACAAGTCAGGTCAATTGGACCAATAAGCCATTGAGCCGTCAAAACCACCATACAATGC
ACCCAGCATTTCACACACACCAGTTCACACACACCAGCTGAGCTACTACTACGTTTCTCGCTACG
CTATTCTTCTCTACTTCTCGCTATCATGATGCTTCTCACTACGCGCAGTATGCACAATCCATCCC
AAAGCCATACCACCACTAAAAATACCAAACACCAAACACCCCAAATTACCCAACCACTTCTTCCC
ACCTTCCCTCTTCCCTTCTTCCCCCTTCTTCTTTCTCTACTTTCT
Right flanking sequence: Indices 1580 -- 2079
CACCTCCCTACCACCACCTTTTTTTCGTGCGGCTCACCACCACCACCACCACCCCATGTCCTCGG
TCGTCTACTACCAGTTCCTCCACCAGAAAACCCGGCTGGTGATCCACTTCGACGGCACCCTGATT
CTGGTGTTTGACCTCAAGCGCGAGATCATCACCCAAAACCAGCTCGGCACCGGGGTCGACTTCAA
CCTCCGCCTCTACCACCTGGAAAACCCGGCCCTCGAGTACGAGCTCGACACCGATGTGGTGCCGC
GGTCGCTGTTTGTGCTCGTGAAACGGTCCCCGTCGCACACCCGCGGCGGCCGCTTCAACAACGCC
AGTCGCTACGTGCTGGGCAAACCCCGGCTCAAACGGGCCGGAGGCGCCCCCGTAGCCCCCGTCAA
CCCGGTGTCGTCGCAGCCGCAGCCCGAGCTCAGCGAGGAGGACCGCATCAAACAAATGTTCGAGA
ACCAGCTGAACGCCTGGGCTTCTAACCAGGACGAGTTGGCCCAGC
Found at i:2930 original size:14 final size:14
Alignment explanation
Indices: 2911--2970 Score: 56
Period size: 14 Copynumber: 4.5 Consensus size: 14
2901 CAGAAGTAGC
2911 AGCATAGTCGGGAG
1 AGCATAGTCGGGAG
*
2925 AGCATAG--GCGA-
1 AGCATAGTCGGGAG
2936 A-CATAGTCGGGAG
1 AGCATAGTCGGGAG
*
2949 AGCATAGCTGGGGAG
1 AGCATAG-TCGGGAG
*
2964 AACATAG
1 AGCATAG
2971 CAGAGAGAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
10 5 0.14
11 1 0.03
12 6 0.16
13 1 0.03
14 12 0.32
15 12 0.32
ACGTcount: A:0.33, C:0.15, G:0.38, T:0.13
Consensus pattern (14 bp):
AGCATAGTCGGGAG
Left flanking sequence: Indices 2411 -- 2910
GTGGAAGAACTACCAGGAGAAGCAGATGAACGCGGCCGCGAAGCAGCAGCGCGAGGCCAACGAGA
AGATGGTGGCGGCGGCGCAGAGCGAGGGCAAGGCCCAGTTCTTGGACCCGTTGGCCGAGGAGCCG
GCGATTGTCAAACCGCCGTTGGTGACGACGCCGTGCTGTCCGGACTTGGCGCTGGCGAAGAAGCT
CAAGAACGTGTACTACAACCAGCTCGACTTGGAGCAGACGCTCATCGAGCTGGACTTCAACTGTC
CCAACTGCGGGTCTGAGGACGTTTTCATTGACCTGTTGGTGCCCGCGAAGGAGGTGGAGGCCGAG
CTCGACGAGTGGGTGGCGGCGAAGCACAAGGAGTTGGGGCTTGTCGACAACAAGCGCCCGTTGGA
GGACAGCGACGAGCCCGAGGCCAAGCGCGCAAAGCCGGAGTTCGTCAACCAGATGCCGTTCATGC
CGTTCCCGATGTTTATGCCGCCGCCACCGCCGTTTCAGAAGTAGC
Right flanking sequence: Indices 2971 -- 3470
CAGAGAGAACATAGCCGGAGACTGTCCTGGCGAGGAGGTCCAAAGATTATAGAGATATAGGTTAC
CGGGGCCAGGGTCCACGGATACGAGTTAATGGAAAGCAAGGTAAATAGATGAAAGGGGGAATGGA
AAGGGAGTATGGTTCAGCTGGTTTGCTGAGGTTACGGCCGAACGAACTGGTTGAAGTTTTCAATC
AACGAATTGAGTATTCAATAAAAGAAGAAGGTGAAAAAGTAAATAAATGTAAAGAAAAATCTCTA
AAAATATAGTACTTTCATTCAACGAACTGGGGTTCATTATAGCTGGTTGATAAGCTAATAGTAAA
ATTCTTTCTTGGTGAAAATTGTGCGAGAGCACCTTCTGGAGGTCTCAGGCATAGAGTTCCTTGTG
ACCGTCCACTCAATGATACAGAAACACTCAATGGTATAGAAACAGCAATTGATTGCTTCTCGCCA
CTAGCTTCCTACCTCGATTTTCCTCTTTGATCTACCAATTGAGAT
Found at i:3390 original size:18 final size:18
Alignment explanation
Indices: 3367--3404 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
3357 TGTGACCGTC
3367 CACTCAATGATACAGAAA
1 CACTCAATGATACAGAAA
* *
3385 CACTCAATGGTATAGAAA
1 CACTCAATGATACAGAAA
3403 CA
1 CA
3405 GCAATTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.21, G:0.13, T:0.18
Consensus pattern (18 bp):
CACTCAATGATACAGAAA
Left flanking sequence: Indices 2867 -- 3366
GTTCCCGATGTTTATGCCGCCGCCACCGCCGTTTCAGAAGTAGCAGCATAGTCGGGAGAGCATAG
GCGAACATAGTCGGGAGAGCATAGCTGGGGAGAACATAGCAGAGAGAACATAGCCGGAGACTGTC
CTGGCGAGGAGGTCCAAAGATTATAGAGATATAGGTTACCGGGGCCAGGGTCCACGGATACGAGT
TAATGGAAAGCAAGGTAAATAGATGAAAGGGGGAATGGAAAGGGAGTATGGTTCAGCTGGTTTGC
TGAGGTTACGGCCGAACGAACTGGTTGAAGTTTTCAATCAACGAATTGAGTATTCAATAAAAGAA
GAAGGTGAAAAAGTAAATAAATGTAAAGAAAAATCTCTAAAAATATAGTACTTTCATTCAACGAA
CTGGGGTTCATTATAGCTGGTTGATAAGCTAATAGTAAAATTCTTTCTTGGTGAAAATTGTGCGA
GAGCACCTTCTGGAGGTCTCAGGCATAGAGTTCCTTGTGACCGTC
Right flanking sequence: Indices 3405 -- 3904
GCAATTGATTGCTTCTCGCCACTAGCTTCCTACCTCGATTTTCCTCTTTGATCTACCAATTGAGA
TAAAAGATATATCACAGTTCACAATGATTAGGGAAAGATTGGATTAAGTCTGAGGATAGATGGAT
TGTATTTTATCAGATTTCAAAGAAATAATTATAATAAAGAGTCGAAGAAGATTTAATCGTTGTTT
TTATGTACTAGTCTTTGTTTATGGCAATTTTTGTCAAAGAAGTAGTCATGCCAGTCCTAGAGGTC
CATTCAACTGGAATGCGCTACCCAATCAGCGATCATCACAAACCACACCTTACTCAGTAGACAAC
CCATCTCCCAATTTCCTACACCTTAAACCTGTCATCCCGCGTATATTTCCTAATCTAGCCATGAC
GCGTCCCGTATTTTGACCACCATGCGTCACGATGCACCCCACAAGTCCGCGGCCTGGAGCCTGGA
GCACTACTACTACCGCAAAGCTCAGTACTACCACGAGTTGGAGCA
Found at i:6836 original size:24 final size:23
Alignment explanation
Indices: 6809--6854 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
6799 TTCCGTCAAT
*
6809 GTGCAACTCGACGAGTCCTTTCGC
1 GTGCAACTCAAC-AGTCCTTTCGC
*
6833 GTGCAACTCAACAGTGCTTTCG
1 GTGCAACTCAACAGTCCTTTCG
6855 AATTCTCCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (23 bp):
GTGCAACTCAACAGTCCTTTCGC
Left flanking sequence: Indices 6309 -- 6808
CCTCCAATCGACTCCCAATCGTACTGGTGGTTCGCCAACGTCAACCATTTGAGGCTGGTAGTGTC
TCCGTCGAAGTTGAGCTTCATCTTAGCCTCCTCGGTGTTTTTAAAAGCGATGTGTACGTACTCCG
CCAGCAGCGGCAACCACGCCTCGCTGAAGTCACCTTCAGACTTCAACGTAATGTGCTTCAACTTG
GGTGTTTGAGCCCACATCTTGGCCAAGTCCTCAAGGTTGTAGTCAGCGCTGATCTCGAGCTCGAT
CATTACTAAGCCCGCAGGGAGCTCATGGTTCCAGTCCTGGTTGATCTTGAGTGTCAACTGTGGAG
TGCTTGCGTCAAACTCGTAGTCCTTCATTTTCTCGCCCAACCATTTGAGCAGGTAGGGCGGTAAT
TTGCTCGTCCCCAGCGAACCAATAGGTCCAATATACTCAAGGTTAAGGTTGTCCACGAAGCGAAG
GCTTTTTGAGTCATAGTAGACATTTTCAATCAGAGTTCCGTCAAT
Right flanking sequence: Indices 6855 -- 7354
AATTCTCCTAGGAATCCTCCTCGGAGACGGAGCCATTCGAGCGATTCGGGGAACTTAGGAAGCAT
TTTATCCGAGGGGCAGCACATATCCAACTTGCGAAGAGACTGCCCAGTTATGGATGTCACCCCTG
CGGGTATTTCTACTTTCTCAATGTTTGGTGCATCAATGCAAACATCGAAAATATCACAGTATTGG
ATGGTCAACTCTTTCAAGGAATTCCATTTTTCAAGCAGTGGAAGCGCGGCTTCCCCGAAAGGATA
AGCAATATACAAGCAGACAATCCCGGCTGGGTTTTCAAACTGATTCTCGAAAAACTCCGTGAATT
CTCCATCCATACCGTGAACGTCAAATTCAAAATTTGTAACCGATGCGGGAACGAGAACATCACTG
AAATTGTCAACGATTCTGAGATTTAGCGAGGTGAGATGGGGAAGATCACCTGCCACGAAGGACCT
GGTCATTTGAATCGACGTGGTACGAACGTCAGTAACATTATGAAT
Found at i:10747 original size:20 final size:20
Alignment explanation
Indices: 10730--10790 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
10720 CATGCTCATT
10730 TTTGACAATCTCTGCTCACA
1 TTTGACAATCTCTGCTCACA
* *
10750 TTTGATAATCTCTGCTCGCA
1 TTTGACAATCTCTGCTCACA
*
10770 TTTGACAATCTCTGTTCACA
1 TTTGACAATCTCTGCTCACA
10790 T
1 T
10791 CTGAGCTCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.23, C:0.26, G:0.11, T:0.39
Consensus pattern (20 bp):
TTTGACAATCTCTGCTCACA
Left flanking sequence: Indices 10230 -- 10729
GTTTGACAATCTTTCGATTTCGGTTGGGATGATGAGATTGACTTTCAAAATGACAAGCATATGTC
TGAATTTCATTGATTAACCCACTGTCATGACTGACCTCTCACCGAAATTGGGATATTGGCAAACC
CGCCACTCGAATGACCGCTCCGCGCCTCCAGGGCTCGTGGTGGTCATTTTGGTGGCGGATGATTG
TTAATGATGACTTACCACATTTATCACGACGGTCTACTGTGGCTAGGACTGTTACTCCTAGCTGT
TGATGATACAAATGGCTTTACCGGCCGTGGTTCCTGAACAACAATCGATGCCGTACGGCCCAACT
AGGGCCGGGGGGGTAGGCGCTCCCCCAGCTGTAGTAGGGTTTCTATGATGACTTTATACCACTTG
AGAGGAGCACTGCGAAGAATCTCAAAAAATTCGATTTGCATGTCAGTCTGAGGAACATCTGTAAG
AGGGGAAGGGATCTTAGTAGGGCGAGGGCCTTTTCCATGCTCATT
Right flanking sequence: Indices 10791 -- 11290
CTGAGCTCTTTACTCAAATCCGTAAAGACCTTCCTGTTAAGGTAACCGAATCCTGCCCCTTACAT
ACCACAGTTCTCGGGTCCTGAGAAGGACAGGCCACGTGTGACTGAAAGCGGAAGGTCTTAAGGGC
CATCTGGATCGTGCCTCTTCTTCGAATCCGCCTACTTGGGTGGTATAGCTCAATCTCTAGCAATC
TTCATGGATCTCACCTAATTGTCAAATATGCGAAAGCTAGCGAAATTAGCTCCTTTTCGTTTTTA
AATCTGTGATTACGTGATAATCCACAAAACGTGCCCACGTACAATAAACACGGCTTACGATATCT
TCACAGCAACGGCTTATTGTTCTCGTGGTCGATCGGATCCGAACTTCCTAATTGGAATGAGTTCC
ACAATAAATGGTAGCATGAGTAATTTGCAGCCGTATAAAACCGGCCTATTTTGGCCTTGTAGGTA
TGTTTCTGTTGGATTCTGAGCTTGCTGAGTGGTTTACCCAGCCTT
Found at i:14664 original size:30 final size:31
Alignment explanation
Indices: 14611--14679 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 31
14601 TGGGAGAGGC
* * *
14611 CAATTGGCCTGGTGGGTGGGTTTCAATCGGG
1 CAATTGGCCAGATGGGTGGGTTTCAATCAGG
14642 CAATTGGCCAGATGGG-GGGTTTCAATCAGG
1 CAATTGGCCAGATGGGTGGGTTTCAATCAGG
14672 CAATTGGC
1 CAATTGGC
14680 GTAGAAGGCG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 21 0.60
31 14 0.40
ACGTcount: A:0.19, C:0.17, G:0.38, T:0.26
Consensus pattern (31 bp):
CAATTGGCCAGATGGGTGGGTTTCAATCAGG
Left flanking sequence: Indices 14111 -- 14610
GTCAACCACCTCCTACTACGAGCTCTACCGGCGGCTGACGGTCGGGGCCACCCTCACGGACGCGC
TCGACACCCTCATCTCCGACGAGAAAATCCAGCCCCAGTTAGCAATTCGCATTTTGCAGAACTTC
GACCGCATCATCTCCGAGCAGTTGAAGCAGGACGCGGGGATTGCCAAGCTGAGACTCACGTTCAA
GGGCAACTTGGACACCTACCGGTTCTGTGACGACGTGTGGACGTTCATCATCAAGAAGGTTGTCA
TCAAAATGACCGACTCCCTGGGGGAGGGTCTGGCGGTGGACAACGAGATCATGGTGGACAAGTTC
AAGATCGTCGCGTGCAACTCGCGCAAGGCCAGTGAGCAATAATGATAATGATAATGAAAATGGTA
GATCCAGGTGGGTCATTCGGTCTCGATTGGGAAGCTGCACCTCCATTGCATGTAAACAAGTAATA
TAATAAAATTGACGAGGAAGAGTGTAGTTGGGTGGTGGGAGAGGC
Right flanking sequence: Indices 14680 -- 15179
GTAGAAGGCGGGTATTTGCGCGTATAGGCGCGAATTGGGTGAGCTTATGCTAGTTGGGAACACTT
GCAGTGTACACGAGTTACAATACGTTGTAGGATCGGTGTAGGATCGGTAAATGTACATTTGTCAA
TTGAGGAGCATTGTGTGTCACCGTTGAGGAGCATTGTGTGTCACTGTTGAGGAGCATTATGTGTC
ACTGTTGAGCCTGAGCAAGCATTGCTCCATCTCCAATGCATTGTGGACACAACCCTCTACACTAA
CCTTCTATTTATTCTAATAACCAAGTTGACTCTACTTTAACCAATTTGACTCTACTTTGACCCGT
CACTAAACTGGATCACCGCCCACTTGCCCAGCGCCGTCCAGAAGTACCCGGGCTGGTCCCCGTTG
GTCATCGCCTCGTACTCCTTGCACAACTCCTCGTTCTTGCCCTCGGGCAACCCCACCACCACGTC
GGCCTTACACGTCCGCAACGTCAACACCGGCAACTGCGAGCGCGC
Found at i:14837 original size:23 final size:23
Alignment explanation
Indices: 14810--14883 Score: 130
Period size: 23 Copynumber: 3.2 Consensus size: 23
14800 CATTTGTCAA
*
14810 TTGAGGAGCATTGTGTGTCACCG
1 TTGAGGAGCATTGTGTGTCACTG
14833 TTGAGGAGCATTGTGTGTCACTG
1 TTGAGGAGCATTGTGTGTCACTG
*
14856 TTGAGGAGCATTATGTGTCACTG
1 TTGAGGAGCATTGTGTGTCACTG
14879 TTGAG
1 TTGAG
14884 CCTGAGCAAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.19, C:0.14, G:0.34, T:0.34
Consensus pattern (23 bp):
TTGAGGAGCATTGTGTGTCACTG
Left flanking sequence: Indices 14310 -- 14809
AACTTGGACACCTACCGGTTCTGTGACGACGTGTGGACGTTCATCATCAAGAAGGTTGTCATCAA
AATGACCGACTCCCTGGGGGAGGGTCTGGCGGTGGACAACGAGATCATGGTGGACAAGTTCAAGA
TCGTCGCGTGCAACTCGCGCAAGGCCAGTGAGCAATAATGATAATGATAATGAAAATGGTAGATC
CAGGTGGGTCATTCGGTCTCGATTGGGAAGCTGCACCTCCATTGCATGTAAACAAGTAATATAAT
AAAATTGACGAGGAAGAGTGTAGTTGGGTGGTGGGAGAGGCCAATTGGCCTGGTGGGTGGGTTTC
AATCGGGCAATTGGCCAGATGGGGGGTTTCAATCAGGCAATTGGCGTAGAAGGCGGGTATTTGCG
CGTATAGGCGCGAATTGGGTGAGCTTATGCTAGTTGGGAACACTTGCAGTGTACACGAGTTACAA
TACGTTGTAGGATCGGTGTAGGATCGGTAAATGTACATTTGTCAA
Right flanking sequence: Indices 14884 -- 15383
CCTGAGCAAGCATTGCTCCATCTCCAATGCATTGTGGACACAACCCTCTACACTAACCTTCTATT
TATTCTAATAACCAAGTTGACTCTACTTTAACCAATTTGACTCTACTTTGACCCGTCACTAAACT
GGATCACCGCCCACTTGCCCAGCGCCGTCCAGAAGTACCCGGGCTGGTCCCCGTTGGTCATCGCC
TCGTACTCCTTGCACAACTCCTCGTTCTTGCCCTCGGGCAACCCCACCACCACGTCGGCCTTACA
CGTCCGCAACGTCAACACCGGCAACTGCGAGCGCGCCAAGTCCTGGATCGCCTCGGTGAAAGGGG
TGGTTTCCGGCCACTCACAGTCGCCGGTCAACTTTCTGTAGTTCAAATCGCCCTTGAAGATGATA
AGGTCGGACTTTCTAAGGGTGTCTGAGAGCCCAGGCACCTCACCAAGCTTCCAGAAGTTGTGCTC
CAGGGTCCAGAACGGGTGGTGGTCCACTGTGATGGCCCCCGAGCC
Found at i:14980 original size:20 final size:20
Alignment explanation
Indices: 14957--14997 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
14947 TTTATTCTAA
14957 TAACCAAGTTGACTCTACTT
1 TAACCAAGTTGACTCTACTT
*
14977 TAACCAATTTGACTCTACTT
1 TAACCAAGTTGACTCTACTT
14997 T
1 T
14998 GACCCGTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (20 bp):
TAACCAAGTTGACTCTACTT
Left flanking sequence: Indices 14457 -- 14956
CGCAAGGCCAGTGAGCAATAATGATAATGATAATGAAAATGGTAGATCCAGGTGGGTCATTCGGT
CTCGATTGGGAAGCTGCACCTCCATTGCATGTAAACAAGTAATATAATAAAATTGACGAGGAAGA
GTGTAGTTGGGTGGTGGGAGAGGCCAATTGGCCTGGTGGGTGGGTTTCAATCGGGCAATTGGCCA
GATGGGGGGTTTCAATCAGGCAATTGGCGTAGAAGGCGGGTATTTGCGCGTATAGGCGCGAATTG
GGTGAGCTTATGCTAGTTGGGAACACTTGCAGTGTACACGAGTTACAATACGTTGTAGGATCGGT
GTAGGATCGGTAAATGTACATTTGTCAATTGAGGAGCATTGTGTGTCACCGTTGAGGAGCATTGT
GTGTCACTGTTGAGGAGCATTATGTGTCACTGTTGAGCCTGAGCAAGCATTGCTCCATCTCCAAT
GCATTGTGGACACAACCCTCTACACTAACCTTCTATTTATTCTAA
Right flanking sequence: Indices 14998 -- 15497
GACCCGTCACTAAACTGGATCACCGCCCACTTGCCCAGCGCCGTCCAGAAGTACCCGGGCTGGTC
CCCGTTGGTCATCGCCTCGTACTCCTTGCACAACTCCTCGTTCTTGCCCTCGGGCAACCCCACCA
CCACGTCGGCCTTACACGTCCGCAACGTCAACACCGGCAACTGCGAGCGCGCCAAGTCCTGGATC
GCCTCGGTGAAAGGGGTGGTTTCCGGCCACTCACAGTCGCCGGTCAACTTTCTGTAGTTCAAATC
GCCCTTGAAGATGATAAGGTCGGACTTTCTAAGGGTGTCTGAGAGCCCAGGCACCTCACCAAGCT
TCCAGAAGTTGTGCTCCAGGGTCCAGAACGGGTGGTGGTCCACTGTGATGGCCCCCGAGCCAAAG
TAGTGCTTGAGCGTGGCGTGGAGCTTCTTGAACTCGTCGTCCTGGGCGTCGAAGAACCCGGGCTC
CACCAACTGCGCCAACAACTGGTCCACGTCCTTGGGCATAGTGTC
Found at i:16602 original size:11 final size:11
Alignment explanation
Indices: 16586--16625 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
16576 TCAGCTTATC
16586 GAGAAAGGTCT
1 GAGAAAGGTCT
16597 GAGAAAGGTCT
1 GAGAAAGGTCT
16608 GAGAAAGGTCT
1 GAGAAAGGTCT
*
16619 GGGAAAG
1 GAGAAAG
16626 ATCGGTGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.40, T:0.15
Consensus pattern (11 bp):
GAGAAAGGTCT
Left flanking sequence: Indices 16086 -- 16585
AATCTCCTCTTTGGTAAACGGCTTTACTTCGTCGTCGTTGTTGATGGCATCGAGAATGTCCTGGA
GACCCCGGGTGAACTCGGCCCGGGACGCCTCGGGAACCAACTTGGACAAGTCTTCGAGGGCCCCC
TGGAGAATCTTAGGCCACCGCGAGCGTGCGGTGGAGTACCCGAACAGCTTGGGGTCAGAGTTGAG
GTAGACTGGGGGAACAGGCATGGAAGGGTATCTGGTGCGAATAGCAAGAAAAAGGAAGAAGAGTT
ACTGGAAGAATTACTGGTTTGAACACAAAAGGTGGGGGAGAGATGACTACAGAGCGGTGGTGGTG
GGAGAGTGGTCTGGAATGGGTGTTTATATCGTAGGGTTATCTAGATGCTTGCGTGACTACTGCTG
TTTTATTAGGGAGCACATGGGGTGCGAGCGATTGTGAAGGCCTGAACAAGTATCAACGCCAAGAT
GGGAATTAGACGAGAAAAGGCGTAGAAGTATAATGTCAGCTTATC
Right flanking sequence: Indices 16626 -- 17125
ATCGGTGAAAGGTATATAGGAGTAGCTTTTGGTGGACGTAGATGTCTCAAATATTAGCTTCACGT
TAACCATATAGGAACAATGGGTAAACCCGACCCCACAAAACTTACCAACGAAGTCAAAACTAGAT
CAAGTCCTCTCCAACTACCCTATCCAAAACACCACACCCACCTTTGAACCTCAAAACACCCCTAT
TTTCATCCCCGCATCCGCCTAACCACTATAGTAAATTTTCGCAACCATCACACGATGGCCCACGA
CTGTCAACGCGCAAAGAAGCCTTGAGTCCAAGACCCGATAAGCGTTCTTCTGACAGTGACAGCTC
GCCAAACTAGAAAGCCACCACAAGTGACCACGAAAGGCACAAGAAACCACACTATACCACTCCAA
CTGACGCTCACTGGGCTCTTTTTTCTACACTCGTTAATTTTTCACATATATTGCCTCTCCCTTCT
ATATTACTTTCATTAATGTACACACTGCTTAGTAAAAAGTGGTGG
Found at i:16635 original size:22 final size:22
Alignment explanation
Indices: 16586--16638 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
16576 TCAGCTTATC
* *
16586 GAGAAAGGTCTGAGAAAGGTCT
1 GAGAAAGGTCTGAGAAAGATCG
*
16608 GAGAAAGGTCTGGGAAAGATCG
1 GAGAAAGGTCTGAGAAAGATCG
*
16630 GTGAAAGGT
1 GAGAAAGGT
16639 ATATAGGAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.36, C:0.08, G:0.40, T:0.17
Consensus pattern (22 bp):
GAGAAAGGTCTGAGAAAGATCG
Left flanking sequence: Indices 16086 -- 16585
AATCTCCTCTTTGGTAAACGGCTTTACTTCGTCGTCGTTGTTGATGGCATCGAGAATGTCCTGGA
GACCCCGGGTGAACTCGGCCCGGGACGCCTCGGGAACCAACTTGGACAAGTCTTCGAGGGCCCCC
TGGAGAATCTTAGGCCACCGCGAGCGTGCGGTGGAGTACCCGAACAGCTTGGGGTCAGAGTTGAG
GTAGACTGGGGGAACAGGCATGGAAGGGTATCTGGTGCGAATAGCAAGAAAAAGGAAGAAGAGTT
ACTGGAAGAATTACTGGTTTGAACACAAAAGGTGGGGGAGAGATGACTACAGAGCGGTGGTGGTG
GGAGAGTGGTCTGGAATGGGTGTTTATATCGTAGGGTTATCTAGATGCTTGCGTGACTACTGCTG
TTTTATTAGGGAGCACATGGGGTGCGAGCGATTGTGAAGGCCTGAACAAGTATCAACGCCAAGAT
GGGAATTAGACGAGAAAAGGCGTAGAAGTATAATGTCAGCTTATC
Right flanking sequence: Indices 16639 -- 17138
ATATAGGAGTAGCTTTTGGTGGACGTAGATGTCTCAAATATTAGCTTCACGTTAACCATATAGGA
ACAATGGGTAAACCCGACCCCACAAAACTTACCAACGAAGTCAAAACTAGATCAAGTCCTCTCCA
ACTACCCTATCCAAAACACCACACCCACCTTTGAACCTCAAAACACCCCTATTTTCATCCCCGCA
TCCGCCTAACCACTATAGTAAATTTTCGCAACCATCACACGATGGCCCACGACTGTCAACGCGCA
AAGAAGCCTTGAGTCCAAGACCCGATAAGCGTTCTTCTGACAGTGACAGCTCGCCAAACTAGAAA
GCCACCACAAGTGACCACGAAAGGCACAAGAAACCACACTATACCACTCCAACTGACGCTCACTG
GGCTCTTTTTTCTACACTCGTTAATTTTTCACATATATTGCCTCTCCCTTCTATATTACTTTCAT
TAATGTACACACTGCTTAGTAAAAAGTGGTGGGAGCCTTGGCGGA
Found at i:24217 original size:12 final size:13
Alignment explanation
Indices: 24200--24232 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
24190 CACAGGCGAG
24200 CCACCACCGCC-C
1 CCACCACCGCCGC
24212 CCACCACCGCCGC
1 CCACCACCGCCGC
24225 CCACCACC
1 CCACCACC
24233 ACCTACCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.18, C:0.73, G:0.09, T:0.00
Consensus pattern (13 bp):
CCACCACCGCCGC
Left flanking sequence: Indices 23700 -- 24199
AGAGCAAGATCTAGGTAGAGAAATAGTTAAGAAAAGGAATGTTAGATGGGTGAGGGTTGAGAGAT
GGTGAGTACGAGGATTTGACTGAGACTATAGGCACTTCTCAGACGAATATACTGGAGGGTAGGCA
AATGGAGATAGGTTGAAAGTAACAGGAAACGCAGTGAAAAGCAGTAATGATAGGTATACAGAGAA
TAAGAAGTTAAGCCATCATTCGTGAGACTTGTGAAATGGTCATTCGCAGAGCAAATGGGTTGGTT
CAAATGAGTTGGTTACTGATCTCAGTGCGTAGGTCTATCCTTAACTCCAGGCTTCAGTTCGATCT
GAAAACTTCCACCTTCCCTGATTAGCCCTTCCCAGCTTCACCAATAGATCTCAAACATACCATTC
TTCACCCCTAATCTCCCTCTGATCCTTCCTTGTTCCCTCCCTTCTTCCTCCTTCTTCCTCCTTGC
TCCACGTTACCCGCGCATAGCCGGAACCGGCCTTCCACAGGCGAG
Right flanking sequence: Indices 24233 -- 24732
ACCTACCAACTCAATGGCACCACCACCAGCCCCCACCACACCCCCACCAGCTCCCCAGCCACCCC
CGTCGCCCGCAACGCTTCTCCCCCTCGGCAGCGCCCGCTTGCTTCCCCGTGTTCCTGCACCGAGC
CCGGATCTACCCCACAGTAAAACCCTCCTCACCACTTTCTCCCACCCAATGTCATTCGGAAAGAA
AGCCGCTGAACGCTTGGCCAACAAGATCATCCTCATCACCGGGGCCTCGCTGGGCATCGGCGAGG
CCACTGCCCAGGAGTTTGCTCGTGCTGCCAACGGGAACGTGCTGCTCATTTTGGCGGCTCGTCGG
GAGGAGAAGTTGAGAAACGTGTCGGAAGAGCTCAGAAAGGAGTTTCCCCTGTTGAAGATCCACAC
CCTGAAGCTTGATGTGACCCAGAAGGACACCATCCAGCCGTTCTTGAGCTCGCTTCCCAAGGAGT
TCGCCGACATCGACATCTTGATCAACAACGCCGGCAAGGCGCTTG
Found at i:24274 original size:21 final size:23
Alignment explanation
Indices: 24250--24294 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
24240 AACTCAATGG
24250 CACCACCACCAGC-CCCCA-CCA
1 CACCACCACCAGCTCCCCAGCCA
*
24271 CACCCCCACCAGCTCCCCAGCCA
1 CACCACCACCAGCTCCCCAGCCA
24294 C
1 C
24295 CCCCGTCGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.57
22 5 0.24
23 4 0.19
ACGTcount: A:0.24, C:0.67, G:0.07, T:0.02
Consensus pattern (23 bp):
CACCACCACCAGCTCCCCAGCCA
Left flanking sequence: Indices 23750 -- 24249
TGAGGGTTGAGAGATGGTGAGTACGAGGATTTGACTGAGACTATAGGCACTTCTCAGACGAATAT
ACTGGAGGGTAGGCAAATGGAGATAGGTTGAAAGTAACAGGAAACGCAGTGAAAAGCAGTAATGA
TAGGTATACAGAGAATAAGAAGTTAAGCCATCATTCGTGAGACTTGTGAAATGGTCATTCGCAGA
GCAAATGGGTTGGTTCAAATGAGTTGGTTACTGATCTCAGTGCGTAGGTCTATCCTTAACTCCAG
GCTTCAGTTCGATCTGAAAACTTCCACCTTCCCTGATTAGCCCTTCCCAGCTTCACCAATAGATC
TCAAACATACCATTCTTCACCCCTAATCTCCCTCTGATCCTTCCTTGTTCCCTCCCTTCTTCCTC
CTTCTTCCTCCTTGCTCCACGTTACCCGCGCATAGCCGGAACCGGCCTTCCACAGGCGAGCCACC
ACCGCCCCCACCACCGCCGCCCACCACCACCTACCAACTCAATGG
Right flanking sequence: Indices 24295 -- 24794
CCCCGTCGCCCGCAACGCTTCTCCCCCTCGGCAGCGCCCGCTTGCTTCCCCGTGTTCCTGCACCG
AGCCCGGATCTACCCCACAGTAAAACCCTCCTCACCACTTTCTCCCACCCAATGTCATTCGGAAA
GAAAGCCGCTGAACGCTTGGCCAACAAGATCATCCTCATCACCGGGGCCTCGCTGGGCATCGGCG
AGGCCACTGCCCAGGAGTTTGCTCGTGCTGCCAACGGGAACGTGCTGCTCATTTTGGCGGCTCGT
CGGGAGGAGAAGTTGAGAAACGTGTCGGAAGAGCTCAGAAAGGAGTTTCCCCTGTTGAAGATCCA
CACCCTGAAGCTTGATGTGACCCAGAAGGACACCATCCAGCCGTTCTTGAGCTCGCTTCCCAAGG
AGTTCGCCGACATCGACATCTTGATCAACAACGCCGGCAAGGCGCTTGGCCGGTCTTCGGTGGGC
GAGATTGACGCTGACGACATGGCTGGCATGATGGACACCAACGTC
Found at i:25251 original size:2 final size:2
Alignment explanation
Indices: 25239--25283 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
25229 GATAGAGTGG
* * * *
25239 GA GA GA AA GA GA GA GA GG GA GG GA GA GA GA GA GA CA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
25281 GA G
1 GA G
25284 GTTGTGGAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.47, C:0.02, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Left flanking sequence: Indices 24739 -- 25238
CTTCGGTGGGCGAGATTGACGCTGACGACATGGCTGGCATGATGGACACCAACGTCACTGGCCTC
ATCAACATGACCCAGGCGGTGTTGCCCCTTTTCAAGCTGAAGAACGCCGGTGACATTGTCAACAT
GGGCTCTGTGGCTGGTAAGGACCCCTACCCCGGTGGGGCGGTCTACTGCGCGTCCAAGGCCGCGG
TCAACTTCTTCTCGCACTGCTTGCGCAAGGAGTTGATCAACACGGGCATCCGGGTGATGGAGATC
TGCCCTGGTGCTGTCAAGACCGAGTTCTCGTTGGTGCGGTTCCACGGGGACGCTGACGCCGCAGA
GAAGGTGTACGACGGCACCACCCCGTTGGAGGCGCTGGACATTGCCGAGCTCATCGTGTTTGGGT
GCTCGCGTCGGGCCAACACCGTGGTTGCGGAGACGTTGGTGTTCCCTTCGCACCAGGCGCTGGGC
AACCACATCTTTAGAAGATCGTAATAGATGTTAGAGATAGAGTGG
Right flanking sequence: Indices 25284 -- 25783
GTTGTGGAAATGTAGTGGAAATGCTCGTATATATACCGTGTGGGTTTTGTAGTGGAATTGCTCGT
ATTTCTATCGTGTGGCCTTTGTGGGCCCAATGCGGTTAGAGAGCCAAGCGAAGGAATGGTAAGTG
TGAAGCAGGCGATTGACTAAATGAGGGGATGATGAAAGGGATGATAGTGGAAGGGATGATGGTGG
AAGGGATGAAGTGGAAGTCATGTTTTGTATGGGGATTCGATTAAGCTTTGAGTGAAGAGTCATAC
GACACCGGATCCAAAGTGAGTGCTTTGGAGATGTATCGTATCTCAAATCGTATCTCGAAGAAGCT
AGGTCTTCAATCCCTTCAACACGGTCAGACTACCCCTATGATTACTAACACCCGGCTCAGAAACG
TCGATCTTGGGGCTTAGACCATCTGAACGACCTGCCACGTTCAGCCGGACCAGGTCTAGACCAGA
ACCACTTAATTTACCCCGCCACCTGGTGATGACACATTGCAACCT
Found at i:25258 original size:18 final size:18
Alignment explanation
Indices: 25232--25272 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
25222 TGTTAGAGAT
*
25232 AGAGTGGGAGAGAAAGAG
1 AGAGAGGGAGAGAAAGAG
* *
25250 AGAGAGGGAGGGAGAGAG
1 AGAGAGGGAGAGAAAGAG
25268 AGAGA
1 AGAGA
25273 CAGAGAGAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.54, T:0.02
Consensus pattern (18 bp):
AGAGAGGGAGAGAAAGAG
Left flanking sequence: Indices 24732 -- 25231
GGCCGGTCTTCGGTGGGCGAGATTGACGCTGACGACATGGCTGGCATGATGGACACCAACGTCAC
TGGCCTCATCAACATGACCCAGGCGGTGTTGCCCCTTTTCAAGCTGAAGAACGCCGGTGACATTG
TCAACATGGGCTCTGTGGCTGGTAAGGACCCCTACCCCGGTGGGGCGGTCTACTGCGCGTCCAAG
GCCGCGGTCAACTTCTTCTCGCACTGCTTGCGCAAGGAGTTGATCAACACGGGCATCCGGGTGAT
GGAGATCTGCCCTGGTGCTGTCAAGACCGAGTTCTCGTTGGTGCGGTTCCACGGGGACGCTGACG
CCGCAGAGAAGGTGTACGACGGCACCACCCCGTTGGAGGCGCTGGACATTGCCGAGCTCATCGTG
TTTGGGTGCTCGCGTCGGGCCAACACCGTGGTTGCGGAGACGTTGGTGTTCCCTTCGCACCAGGC
GCTGGGCAACCACATCTTTAGAAGATCGTAATAGATGTTAGAGAT
Right flanking sequence: Indices 25273 -- 25772
CAGAGAGAGAGGTTGTGGAAATGTAGTGGAAATGCTCGTATATATACCGTGTGGGTTTTGTAGTG
GAATTGCTCGTATTTCTATCGTGTGGCCTTTGTGGGCCCAATGCGGTTAGAGAGCCAAGCGAAGG
AATGGTAAGTGTGAAGCAGGCGATTGACTAAATGAGGGGATGATGAAAGGGATGATAGTGGAAGG
GATGATGGTGGAAGGGATGAAGTGGAAGTCATGTTTTGTATGGGGATTCGATTAAGCTTTGAGTG
AAGAGTCATACGACACCGGATCCAAAGTGAGTGCTTTGGAGATGTATCGTATCTCAAATCGTATC
TCGAAGAAGCTAGGTCTTCAATCCCTTCAACACGGTCAGACTACCCCTATGATTACTAACACCCG
GCTCAGAAACGTCGATCTTGGGGCTTAGACCATCTGAACGACCTGCCACGTTCAGCCGGACCAGG
TCTAGACCAGAACCACTTAATTTACCCCGCCACCTGGTGATGACA
Found at i:25370 original size:37 final size:37
Alignment explanation
Indices: 25294--25370 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
25284 GTTGTGGAAA
**
25294 TGTAGTGGAAATGCTCGTATATATACCGTGTGGGTTT
1 TGTAGTGGAAATGCTCGTATATATACCGTGTGGCCTT
* * * *
25331 TGTAGTGGAATTGCTCGTATTTCTATCGTGTGGCCTT
1 TGTAGTGGAAATGCTCGTATATATACCGTGTGGCCTT
25368 TGT
1 TGT
25371 GGGCCCAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.17, C:0.13, G:0.29, T:0.42
Consensus pattern (37 bp):
TGTAGTGGAAATGCTCGTATATATACCGTGTGGCCTT
Left flanking sequence: Indices 24794 -- 25293
CACTGGCCTCATCAACATGACCCAGGCGGTGTTGCCCCTTTTCAAGCTGAAGAACGCCGGTGACA
TTGTCAACATGGGCTCTGTGGCTGGTAAGGACCCCTACCCCGGTGGGGCGGTCTACTGCGCGTCC
AAGGCCGCGGTCAACTTCTTCTCGCACTGCTTGCGCAAGGAGTTGATCAACACGGGCATCCGGGT
GATGGAGATCTGCCCTGGTGCTGTCAAGACCGAGTTCTCGTTGGTGCGGTTCCACGGGGACGCTG
ACGCCGCAGAGAAGGTGTACGACGGCACCACCCCGTTGGAGGCGCTGGACATTGCCGAGCTCATC
GTGTTTGGGTGCTCGCGTCGGGCCAACACCGTGGTTGCGGAGACGTTGGTGTTCCCTTCGCACCA
GGCGCTGGGCAACCACATCTTTAGAAGATCGTAATAGATGTTAGAGATAGAGTGGGAGAGAAAGA
GAGAGAGGGAGGGAGAGAGAGAGACAGAGAGAGAGGTTGTGGAAA
Right flanking sequence: Indices 25371 -- 25870
GGGCCCAATGCGGTTAGAGAGCCAAGCGAAGGAATGGTAAGTGTGAAGCAGGCGATTGACTAAAT
GAGGGGATGATGAAAGGGATGATAGTGGAAGGGATGATGGTGGAAGGGATGAAGTGGAAGTCATG
TTTTGTATGGGGATTCGATTAAGCTTTGAGTGAAGAGTCATACGACACCGGATCCAAAGTGAGTG
CTTTGGAGATGTATCGTATCTCAAATCGTATCTCGAAGAAGCTAGGTCTTCAATCCCTTCAACAC
GGTCAGACTACCCCTATGATTACTAACACCCGGCTCAGAAACGTCGATCTTGGGGCTTAGACCAT
CTGAACGACCTGCCACGTTCAGCCGGACCAGGTCTAGACCAGAACCACTTAATTTACCCCGCCAC
CTGGTGATGACACATTGCAACCTGACCTTCCCCTTTGGGACACACCCGAAGTTGCGTACCATCGC
CACATACGACCTTAATAAGCCCCAACCAGCTAGCCCCAGTGGCGC
Found at i:25469 original size:15 final size:15
Alignment explanation
Indices: 25449--25495 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
25439 GGGATGATGA
25449 AAGGGATGATAGTGG
1 AAGGGATGATAGTGG
*
25464 AAGGGATGATGGTGG
1 AAGGGATGATAGTGG
25479 AAGGGATGA-AGTGG
1 AAGGGATGATAGTGG
25493 AAG
1 AAG
25496 TCATGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 7 0.23
15 23 0.77
ACGTcount: A:0.34, C:0.00, G:0.49, T:0.17
Consensus pattern (15 bp):
AAGGGATGATAGTGG
Left flanking sequence: Indices 24949 -- 25448
ACTGCTTGCGCAAGGAGTTGATCAACACGGGCATCCGGGTGATGGAGATCTGCCCTGGTGCTGTC
AAGACCGAGTTCTCGTTGGTGCGGTTCCACGGGGACGCTGACGCCGCAGAGAAGGTGTACGACGG
CACCACCCCGTTGGAGGCGCTGGACATTGCCGAGCTCATCGTGTTTGGGTGCTCGCGTCGGGCCA
ACACCGTGGTTGCGGAGACGTTGGTGTTCCCTTCGCACCAGGCGCTGGGCAACCACATCTTTAGA
AGATCGTAATAGATGTTAGAGATAGAGTGGGAGAGAAAGAGAGAGAGGGAGGGAGAGAGAGAGAC
AGAGAGAGAGGTTGTGGAAATGTAGTGGAAATGCTCGTATATATACCGTGTGGGTTTTGTAGTGG
AATTGCTCGTATTTCTATCGTGTGGCCTTTGTGGGCCCAATGCGGTTAGAGAGCCAAGCGAAGGA
ATGGTAAGTGTGAAGCAGGCGATTGACTAAATGAGGGGATGATGA
Right flanking sequence: Indices 25496 -- 25995
TCATGTTTTGTATGGGGATTCGATTAAGCTTTGAGTGAAGAGTCATACGACACCGGATCCAAAGT
GAGTGCTTTGGAGATGTATCGTATCTCAAATCGTATCTCGAAGAAGCTAGGTCTTCAATCCCTTC
AACACGGTCAGACTACCCCTATGATTACTAACACCCGGCTCAGAAACGTCGATCTTGGGGCTTAG
ACCATCTGAACGACCTGCCACGTTCAGCCGGACCAGGTCTAGACCAGAACCACTTAATTTACCCC
GCCACCTGGTGATGACACATTGCAACCTGACCTTCCCCTTTGGGACACACCCGAAGTTGCGTACC
ATCGCCACATACGACCTTAATAAGCCCCAACCAGCTAGCCCCAGTGGCGCCAACTACATAAACAA
CTACATAAACAACAACCCTCTAGCTTTCTCAACAATCATGGCTTCCATCACTCTCTACGCACTCA
CCACTCCCAACGGCTACCGGGTCAGCACCTACTTGACCGCGCTCG
Found at i:25888 original size:12 final size:12
Alignment explanation
Indices: 25871--25898 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
25861 CCAGTGGCGC
25871 CAACTACATAAA
1 CAACTACATAAA
25883 CAACTACATAAA
1 CAACTACATAAA
25895 CAAC
1 CAAC
25899 AACCCTCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14
Consensus pattern (12 bp):
CAACTACATAAA
Left flanking sequence: Indices 25371 -- 25870
GGGCCCAATGCGGTTAGAGAGCCAAGCGAAGGAATGGTAAGTGTGAAGCAGGCGATTGACTAAAT
GAGGGGATGATGAAAGGGATGATAGTGGAAGGGATGATGGTGGAAGGGATGAAGTGGAAGTCATG
TTTTGTATGGGGATTCGATTAAGCTTTGAGTGAAGAGTCATACGACACCGGATCCAAAGTGAGTG
CTTTGGAGATGTATCGTATCTCAAATCGTATCTCGAAGAAGCTAGGTCTTCAATCCCTTCAACAC
GGTCAGACTACCCCTATGATTACTAACACCCGGCTCAGAAACGTCGATCTTGGGGCTTAGACCAT
CTGAACGACCTGCCACGTTCAGCCGGACCAGGTCTAGACCAGAACCACTTAATTTACCCCGCCAC
CTGGTGATGACACATTGCAACCTGACCTTCCCCTTTGGGACACACCCGAAGTTGCGTACCATCGC
CACATACGACCTTAATAAGCCCCAACCAGCTAGCCCCAGTGGCGC
Right flanking sequence: Indices 25899 -- 26398
AACCCTCTAGCTTTCTCAACAATCATGGCTTCCATCACTCTCTACGCACTCACCACTCCCAACGG
CTACCGGGTCAGCACCTACTTGACCGCGCTCGGGCTCCCCTTTGACTACGTCAAGGTGGACATTC
GCAAGAACGAGCACAAGCTGCCGGAGTTTTTGAAATTGAACCCCAACGGACGCATCCCCACGTTG
GTGGACCGGTCCACTGGGGTCACCATCTCGCAGACGGCCGCGATCTTGATGTATCTCGCCGAGAC
GTACGACCAGGAGCGCCAGTGGAGCTATGCGCCCGGTACCAATGAGTACTGGCAGCTGCTTGAGA
TCTTGATGCTCTCTGTGGGCGAACAGGACCCGATCCAGGGCGAGGCCAACCACTACAAGTTGTAT
GCCTCCGAGCGGGTCCAGTATGGCCTAGACCGGTACACTAACGACACGAAGCGTATTTACGGGGT
GTTGGAGAGCTACTTGAAGTGCAACGCCCACGGACCGTACTTTGT
Found at i:33225 original size:10 final size:11
Alignment explanation
Indices: 33210--33238 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
33200 TTTTAGAAAT
33210 GGTTGTGGT-G
1 GGTTGTGGTGG
33220 GGTTGTGGTGG
1 GGTTGTGGTGG
33231 GGTTGTGG
1 GGTTGTGG
33239 GTGTCTCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.00, C:0.00, G:0.62, T:0.38
Consensus pattern (11 bp):
GGTTGTGGTGG
Left flanking sequence: Indices 32710 -- 33209
CTGCCTGCGGGCCACGTTGATCAGCTCGGCCACCGCCTTGATTTCGTCGGCAAGCTTGTCCTTGG
CCGAGCGCACCGCCTGGCGGCCCTCGTCGTCGGAGTCCAGGTCGCCACCCGCCCCCTTCAAGAAT
TGCTTCTTGAGAAAGTAGGCCGGGCCCAGCGCCCGGAACCCGTCGTCGTCCAGGGAGTCCAGGTC
GGAGTCGTCGTCCAGCGAGGGGAAGTCCAGGTCGGAGTCGTCGGACAGCGACAACAACTCCTCCT
CGGACGTGGAAAGAAGGTCTTCCTCTTCACTGGACGAGTCCAGGTACCCGCTAACAAAGAATCGG
GACATTACTGAAAAATTTTCAATAGTGAGTGGTGAAAAAAGGTTAGGGAAAAACGAGATGGGTGG
AGGAAAGAAGGAAGGGAGTGAGATGGGGACGAGATGGGGGTGGGAGGGGATGGGAGAGGGTCACG
GGGGCGCGAGGATAGTAGGGAAAGGGTGTAATGTGTTTTAGAAAT
Right flanking sequence: Indices 33239 -- 33738
GTGTCTCACTGTGGTGATGTAGTCAGCCGCAGGGAATGGAGGGGAGAGAGATGAAGAAGAGATGA
AGAAGAAATGGAAGAAGAGGTGATAAGAATGAAAACGGTGGGCTTAGGGTGGGTATGTAGTGTGG
GGGTTTATAGAAGAGACATGGATGTTGTGAGGGTACGAGGTTTGGTGCTCTGAAATGGTCTGGTT
GTGTTTTGTGTGGTTGCTCAGAACCGTGGTGCGATTTGCCACCAGCGATTGGGGAGCGGGGGCAA
GAAAGAGGCGGTGTTTGTGGGTCGTAGGGGAGAAAGGAAGCGGGTTCCAGTTCGGAAACGCGTTG
GTTGGGGTTTTTACTGGCGTTGGGGGGGTACAGCCCACCATGCAGCATTACGCTAATCACGAATG
ATAAGCAGAAGATCAGAGGGTTGCGGAAAGGAGAAATCCTTGGAAGTAGCTTGATAATAGTCTTT
CGGTCGTATTTGTTAGTCTTCAGCTCCTTTTGGTTCTTCCTGATT
Found at i:33301 original size:11 final size:11
Alignment explanation
Indices: 33285--33322 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
33275 TGGAGGGGAG
33285 AGAGATGAAGA
1 AGAGATGAAGA
33296 AGAGATGAAGA
1 AGAGATGAAGA
*
33307 AGAAATGGAAGA
1 AGAGAT-GAAGA
33319 AGAG
1 AGAG
33323 GTGATAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 16 0.67
12 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.37, T:0.08
Consensus pattern (11 bp):
AGAGATGAAGA
Left flanking sequence: Indices 32785 -- 33284
CGCCTGGCGGCCCTCGTCGTCGGAGTCCAGGTCGCCACCCGCCCCCTTCAAGAATTGCTTCTTGA
GAAAGTAGGCCGGGCCCAGCGCCCGGAACCCGTCGTCGTCCAGGGAGTCCAGGTCGGAGTCGTCG
TCCAGCGAGGGGAAGTCCAGGTCGGAGTCGTCGGACAGCGACAACAACTCCTCCTCGGACGTGGA
AAGAAGGTCTTCCTCTTCACTGGACGAGTCCAGGTACCCGCTAACAAAGAATCGGGACATTACTG
AAAAATTTTCAATAGTGAGTGGTGAAAAAAGGTTAGGGAAAAACGAGATGGGTGGAGGAAAGAAG
GAAGGGAGTGAGATGGGGACGAGATGGGGGTGGGAGGGGATGGGAGAGGGTCACGGGGGCGCGAG
GATAGTAGGGAAAGGGTGTAATGTGTTTTAGAAATGGTTGTGGTGGGTTGTGGTGGGGTTGTGGG
TGTCTCACTGTGGTGATGTAGTCAGCCGCAGGGAATGGAGGGGAG
Right flanking sequence: Indices 33323 -- 33822
GTGATAAGAATGAAAACGGTGGGCTTAGGGTGGGTATGTAGTGTGGGGGTTTATAGAAGAGACAT
GGATGTTGTGAGGGTACGAGGTTTGGTGCTCTGAAATGGTCTGGTTGTGTTTTGTGTGGTTGCTC
AGAACCGTGGTGCGATTTGCCACCAGCGATTGGGGAGCGGGGGCAAGAAAGAGGCGGTGTTTGTG
GGTCGTAGGGGAGAAAGGAAGCGGGTTCCAGTTCGGAAACGCGTTGGTTGGGGTTTTTACTGGCG
TTGGGGGGGTACAGCCCACCATGCAGCATTACGCTAATCACGAATGATAAGCAGAAGATCAGAGG
GTTGCGGAAAGGAGAAATCCTTGGAAGTAGCTTGATAATAGTCTTTCGGTCGTATTTGTTAGTCT
TCAGCTCCTTTTGGTTCTTCCTGATTCATACTTGTTCTTACTGTTTCCCACTGGGTCTCTTCCCT
TGGTCCTTCCCTGCACACAGCCACCCAACGGCTGGAGGCACGGGT
Found at i:34260 original size:18 final size:16
Alignment explanation
Indices: 34229--34267 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
34219 AAAGGCTCTT
34229 CCCAATCACCAATCCA
1 CCCAATCACCAATCCA
*
34245 CCCAATCTACCCAATCTA
1 CCCAATC-A-CCAATCCA
34263 CCCAA
1 CCCAA
34268 CCCACACACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 1 0.05
18 12 0.60
ACGTcount: A:0.36, C:0.49, G:0.00, T:0.15
Consensus pattern (16 bp):
CCCAATCACCAATCCA
Left flanking sequence: Indices 33729 -- 34228
CTTCCTGATTCATACTTGTTCTTACTGTTTCCCACTGGGTCTCTTCCCTTGGTCCTTCCCTGCAC
ACAGCCACCCAACGGCTGGAGGCACGGGTATCAAATACACCCCGTCCCGCCGCCAAGACCTGCTC
GGACATGTAGAAAGCAAAATGACGAGAAAATATTGGTATTGGTGCTTTTTTATTTCATTTAGCTA
GGTTAAGCGGGTAGAGAGAATGTTTCTATATATAGTAAGGTACTCGTCAGACGGAGATAAGACTC
CAGCCTTTGAGTCAATAGTCTTGAATCACCGTTGACACACTTGTGATCCTCTGAGAGACCAAAAC
ACCACCGATCCCTTAATTCACCTTCCTATTTCCTTACGCTTTGACATTTCGCAACCTCCAATGGA
TCAGAAACCATGGCCTGAGGCCGCCCTGATCCAACCGCATGATCCCAGATCACAGCCAGATCCGG
CCAGAAACACCCTCAATTGGCTCAAATACTCCAACAAAGGCTCTT
Right flanking sequence: Indices 34268 -- 34767
CCCACACACTCACCTTCTCCCAACCTACATTGACCCAATCCACATACTTCCACCCACCTTCACAC
CACCCACCCACTTCACACTATCGACCCACTTCTACCCTCTCTACATCTTTCCTCTCTACATTTCC
CTATTCCTTCTCCTATTCATACATTTCGTTAACTTACAACTGGCCCTTGGTGTGGAAAATGTCGA
GAGCCTCAGTGATACGCTTCGACATCGACTTCTCACCCTCACGAACCCACACTCTGGGGTCGAAG
TACTTCTTGTTGGGCTTGTCGTCGCCGTCGGGGTTGCCGACAGGGGTCATCAAGTAGTCCTTCTT
GGACAACACGTAGTCACGCACACCCGACAAGTAAGCGTACTGGCAGTCGGTGTCCAAGTTGACCT
TGACGACACCGTGCTTGATGGCAGTGTCAAACTCCTGCTGGGACGAGCCGGAGCCACCGTGGAAC
ACCAAGAAGAGGGGCTTGGCCTCAGAGCCACCGATCTGCTTCTGG
Found at i:34348 original size:18 final size:18
Alignment explanation
Indices: 34317--34364 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
34307 CCACATACTT
34317 CCACCCACCTTCACACCAC
1 CCACCCA-CTTCACACCAC
* *
34336 CCACCCACTTCACACTAT
1 CCACCCACTTCACACCAC
*
34354 CGACCCACTTC
1 CCACCCACTTC
34365 TACCCTCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.25, C:0.56, G:0.02, T:0.17
Consensus pattern (18 bp):
CCACCCACTTCACACCAC
Left flanking sequence: Indices 33817 -- 34316
ACGGGTATCAAATACACCCCGTCCCGCCGCCAAGACCTGCTCGGACATGTAGAAAGCAAAATGAC
GAGAAAATATTGGTATTGGTGCTTTTTTATTTCATTTAGCTAGGTTAAGCGGGTAGAGAGAATGT
TTCTATATATAGTAAGGTACTCGTCAGACGGAGATAAGACTCCAGCCTTTGAGTCAATAGTCTTG
AATCACCGTTGACACACTTGTGATCCTCTGAGAGACCAAAACACCACCGATCCCTTAATTCACCT
TCCTATTTCCTTACGCTTTGACATTTCGCAACCTCCAATGGATCAGAAACCATGGCCTGAGGCCG
CCCTGATCCAACCGCATGATCCCAGATCACAGCCAGATCCGGCCAGAAACACCCTCAATTGGCTC
AAATACTCCAACAAAGGCTCTTCCCAATCACCAATCCACCCAATCTACCCAATCTACCCAACCCA
CACACTCACCTTCTCCCAACCTACATTGACCCAATCCACATACTT
Right flanking sequence: Indices 34365 -- 34864
TACCCTCTCTACATCTTTCCTCTCTACATTTCCCTATTCCTTCTCCTATTCATACATTTCGTTAA
CTTACAACTGGCCCTTGGTGTGGAAAATGTCGAGAGCCTCAGTGATACGCTTCGACATCGACTTC
TCACCCTCACGAACCCACACTCTGGGGTCGAAGTACTTCTTGTTGGGCTTGTCGTCGCCGTCGGG
GTTGCCGACAGGGGTCATCAAGTAGTCCTTCTTGGACAACACGTAGTCACGCACACCCGACAAGT
AAGCGTACTGGCAGTCGGTGTCCAAGTTGACCTTGACGACACCGTGCTTGATGGCAGTGTCAAAC
TCCTGCTGGGACGAGCCGGAGCCACCGTGGAACACCAAGAAGAGGGGCTTGGCCTCAGAGCCACC
GATCTGCTTCTGGGCGTAAGCCTGGTGGTCACCCAAGATCTCGGGCTTCAAGGTCACGTTACCGG
GCTTGTAGACACCGTGCACGTTACCGAAGGCAGCGGCAATGGAGA
Found at i:37056 original size:21 final size:21
Alignment explanation
Indices: 37015--37056 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
37005 CTCGAGGGCC
* *
37015 ATTGCGGTGCCCACGAGCCCG
1 ATTGCGGTGCCCAAGACCCCG
37036 ATTGCGG-GCCCAAGCACCCCG
1 ATTGCGGTGCCCAAG-ACCCCG
37057 CCGTCACTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.17, C:0.40, G:0.31, T:0.12
Consensus pattern (21 bp):
ATTGCGGTGCCCAAGACCCCG
Left flanking sequence: Indices 36515 -- 37014
CACCTATGATGTCCCGGGCCTGGTACCCGTGCTCGCGGAGCCGGGCCACCGCGCGCTGCGAGTCG
TTGCCGTAGCGACACACCACCACCACCGGATCGTCCTTCGACCCGATTAGATCTTCGTAGCCCTC
GCGTTTGCGAAACTCGTCCCAGGGAACGTTGAGTGACCCCGTGAGGCTGGTGATGGCATATTGCT
CGCGCGGACGCACGTCTATAAGCAACCCGGTGGGTTTTTCGTGGTACTCACGTGCCAACACCCGG
TGCTCGCGTGGGAGCTGGTTGATCGCCAGCACCCCGCAAAATGCCAGGTAGTCGATGTGGGATTC
GATCTCGCGACGTCCGATCGTGGGGTGGTCTCCGCACACCGCACACTGGGGCTGTTTGCGGCGCA
TCTTGAATAGTCGTAGCTGTTGCTGGGGGTAGCCCGCGTACCCCGAGAGGAACGGGGTGAACAGC
TCGCGGGTGTAGAACCCCGTGAGCACCTTGATTGTCTCGAGGGCC
Right flanking sequence: Indices 37057 -- 37556
CCGTCACTGCACGAGGTGACCGAGTCCGGTGGAGGGGGGGTCGGGTAGAAGCACCGGTAGCACGG
GCCCACGGTGTCGAAGTTGTAGATGGAAAGCTGGCCCTCGGTCTTGAGTCCGGAGCCGCTGACCA
CGGTTTTTCCGCACACCACCGCGACGTCGTTGATCAAGTAGCGGGTCAGCGGGGTGTCGGTGCAG
TCCAACACGAGGTCGTAGTCGACGAAAATGCCAAAGGCGTTGGAGGGGTCTAGGCGGAACGGGTA
GGTCTTCACCGTGACGAACGGGTTGAGCCGGGTAATGTACAGCTTCGCGGACTCGCACTTGAGCT
CGCCGGGGGTGTGGTGGAGGATCTGGCGGTGGAGGTTCGACACGTCCACGGTATCGCCGTCAACG
ATGCCAATAGTACCGATCCCGGCCCCAGCCAAGTACGCCAACGCCGGACAGCCCAACCCACCGGC
GCCAATGACCACGATCCGAGCCCCCTTGAGCTTCTTCTGGGACGG
Found at i:38771 original size:12 final size:12
Alignment explanation
Indices: 38754--38788 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
38744 GGGTGCGGCG
38754 AATGCCGGTGCA
1 AATGCCGGTGCA
*
38766 AATGCCGGTGCC
1 AATGCCGGTGCA
*
38778 GATGCCGGTGC
1 AATGCCGGTGC
38789 TGCCGGTGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.17, C:0.29, G:0.37, T:0.17
Consensus pattern (12 bp):
AATGCCGGTGCA
Left flanking sequence: Indices 38254 -- 38753
CATCCGCCTGCTAACCCCGGAATGTCGGCAAAAGCCCTGACACCTGCAGGACCTCCAAAATTTAC
GCACGGAAGCAGACGAAATCTCGGTTGGATCAAAGCAGAGCGAACATGGTCAAGGACACCACGTA
CTACGACCTCTTGGAGGTCGAGGCCACCGCCACCGACGCCCAGTTGAAGAAGGCGTACCGCAAGA
TGGCTATCAAGTGGCACCCTGACAAGAACGCCAACGACCCCAAGGCCGGAGAACACTTCCAGATG
GTGGGAGAGGCCTACGGCGTGTTGAAGGACCCCGAACAACGGAAGCTCTACGACGAAGTGGGCGT
GGAGGGGATGAAGGAGCAGGCGAACCCGGAAACCCAGGTGGACCCCGCCGAGATGTTTGCCCAGA
TCTTTGGCGGTGAGCTGTTTGAGCTGTGGATTGGCGAGTTGTCGATGTTCAAGGACATGCTGAAG
ACCGCAGACATTATGGAGGAGGAGGAGGAGAAGGAGGGTGCGGCG
Right flanking sequence: Indices 38789 -- 39288
TGCCGGTGCTGCCGGTGCTGCCGGTGCTGCTGGGACGGCCAGCACCAGCGAAGCAGACAAGGTGG
CCGACCAGGTCAGCGACCTCCACGTGTCGCACCCCGCCGAGCTGGCTGCGCTGAAGACCCTGGGC
CCCGCTCTCACATCGGAGGAGATCAACAAGAAGAAGAAACAGAAGGTGCTGCGCGAGCAACGCGA
GAAGATGATGCAGTTGCACGAGGAAATGCGGCAGGAGAAGCTCAAACGGGTGGCTGCCTTGCTGA
AGACGCTTCTTGGCCGCCTCGACAAGTATCGCGAGGCCCAGCACGCCGGGCCTGAGGCCGTCAAC
CTCTACACCCAGAAACTCGACACCGAGCTCCAGGAGATGAAGGAGGAGCTGTTCGGGCTCCAGTT
GCTCCATCTCATTGGCCAGATCTACACCAACCAAGCCCATGCCGCCATCAACCTGGCCAAGACGT
TTGGGGTGCTGAAGATCTACCTGAGTGTCAAGGGCAAGACCACCA
Found at i:38794 original size:9 final size:9
Alignment explanation
Indices: 38780--38818 Score: 78
Period size: 9 Copynumber: 4.3 Consensus size: 9
38770 CCGGTGCCGA
38780 TGCCGGTGC
1 TGCCGGTGC
38789 TGCCGGTGC
1 TGCCGGTGC
38798 TGCCGGTGC
1 TGCCGGTGC
38807 TGCCGGTGC
1 TGCCGGTGC
38816 TGC
1 TGC
38819 TGGGACGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.44, T:0.23
Consensus pattern (9 bp):
TGCCGGTGC
Left flanking sequence: Indices 38280 -- 38779
GGCAAAAGCCCTGACACCTGCAGGACCTCCAAAATTTACGCACGGAAGCAGACGAAATCTCGGTT
GGATCAAAGCAGAGCGAACATGGTCAAGGACACCACGTACTACGACCTCTTGGAGGTCGAGGCCA
CCGCCACCGACGCCCAGTTGAAGAAGGCGTACCGCAAGATGGCTATCAAGTGGCACCCTGACAAG
AACGCCAACGACCCCAAGGCCGGAGAACACTTCCAGATGGTGGGAGAGGCCTACGGCGTGTTGAA
GGACCCCGAACAACGGAAGCTCTACGACGAAGTGGGCGTGGAGGGGATGAAGGAGCAGGCGAACC
CGGAAACCCAGGTGGACCCCGCCGAGATGTTTGCCCAGATCTTTGGCGGTGAGCTGTTTGAGCTG
TGGATTGGCGAGTTGTCGATGTTCAAGGACATGCTGAAGACCGCAGACATTATGGAGGAGGAGGA
GGAGAAGGAGGGTGCGGCGAATGCCGGTGCAAATGCCGGTGCCGA
Right flanking sequence: Indices 38819 -- 39318
TGGGACGGCCAGCACCAGCGAAGCAGACAAGGTGGCCGACCAGGTCAGCGACCTCCACGTGTCGC
ACCCCGCCGAGCTGGCTGCGCTGAAGACCCTGGGCCCCGCTCTCACATCGGAGGAGATCAACAAG
AAGAAGAAACAGAAGGTGCTGCGCGAGCAACGCGAGAAGATGATGCAGTTGCACGAGGAAATGCG
GCAGGAGAAGCTCAAACGGGTGGCTGCCTTGCTGAAGACGCTTCTTGGCCGCCTCGACAAGTATC
GCGAGGCCCAGCACGCCGGGCCTGAGGCCGTCAACCTCTACACCCAGAAACTCGACACCGAGCTC
CAGGAGATGAAGGAGGAGCTGTTCGGGCTCCAGTTGCTCCATCTCATTGGCCAGATCTACACCAA
CCAAGCCCATGCCGCCATCAACCTGGCCAAGACGTTTGGGGTGCTGAAGATCTACCTGAGTGTCA
AGGGCAAGACCACCACTGTGCGCAACGGTTTCTCGATTCTCAAGA
Found at i:39695 original size:9 final size:9
Alignment explanation
Indices: 39681--39705 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
39671 TGCCACCGCC
39681 AAGAAGCTG
1 AAGAAGCTG
39690 AAGAAGCTG
1 AAGAAGCTG
39699 AAGAAGC
1 AAGAAGC
39706 GCAACATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.32, T:0.08
Consensus pattern (9 bp):
AAGAAGCTG
Left flanking sequence: Indices 39181 -- 39680
TCCATCTCATTGGCCAGATCTACACCAACCAAGCCCATGCCGCCATCAACCTGGCCAAGACGTTT
GGGGTGCTGAAGATCTACCTGAGTGTCAAGGGCAAGACCACCACTGTGCGCAACGGTTTCTCGAT
TCTCAAGACTGCTCTCAACGCCCAGACTGCGCTCGAGGAGATGACCCGCGAGCAGGAGGCGATTG
CGCTCGCCGAGGAGGCTGGCGTCGAGCTCTCGGACGAGGTGCGCTACCGCCAGGCGGAGATGGAG
CGGACGATCATGGGCAAGTTCTTGGCCACCGCGTGGGCGCTGTCCAAGTACGAGGTCACCGACGT
GTTGACCAAGGTCGCCGACACCTTGGTCAAGGACAAGGAGGTGCCCAAGAAGGAGCGGTTGGCAC
GGGCCGAGGCGTTGTTGTGGCTCGGTAAGCACCTCCTGAAGGTGCAGCGCACCGCCCAAGAGGAG
GAGGAGGCACGGATCTTTGAGGAGATGGTGGCTGATGCCACCGCC
Right flanking sequence: Indices 39706 -- 40205
GCAACATCAACCCCGAGGAGCTTAATATGTTTATGGAGGCCGAGGAGGAGAAGGAGCGGGCGGGA
TAGATTTACGGTAGTAATGGGACATAAGAATAGGCATGTGTAGGTGGGAGGAGCTCACAGCAGGT
GGATTGAAGAATGGCAACGTCTAGAATGTCCAGAGCTCTACGATTTAGAAGGGTTTAGCTTAACC
ACAATGTTATCAAAACAGAGATAACCTACTATCAGTCGAAATATATTGTGAATGTGCTTCGAATA
CAAATATTTATCACCTTAATCCTTTAATGTCTTGATAATCTCCTTGGCGAGCTTGGACAAGGCCT
CGTTCTCGTGGTCCTTAAACTCGGACACGGTCTCGAGCAACCGCTTCGAGTCGTCGTCCAGCACC
GCCTGCTGCACCTTGTCGCTGGAGGCCCTCACCTTGGCCACCGACAACACCAGGTCGAGCGCTGC
CTCCAAGTCTGCAAGGTACACCTCGTCAGAATCCTCGTCCTCGGC
Found at i:45139 original size:23 final size:22
Alignment explanation
Indices: 45069--45139 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 22
45059 ATCTCCATCT
45069 TTCTCTGTGCTCTTCT-TCTCC
1 TTCTCTGTGCTCTTCTCTCTCC
* * *
45090 TTCTCTTTGGATGC-TCTCTCTCT
1 TTCTCTGT-GCT-CTTCTCTCTCC
45113 TTCTCTGTGCTCTTCTCTCTCCC
1 TTCTCTGTGCTCTTCTCTCT-CC
45136 TTCT
1 TTCT
45140 TTCTCGTCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
21 8 0.21
22 14 0.36
23 17 0.44
ACGTcount: A:0.01, C:0.37, G:0.10, T:0.52
Consensus pattern (22 bp):
TTCTCTGTGCTCTTCTCTCTCC
Left flanking sequence: Indices 44569 -- 45068
GGGCCGCCAACTCGACCATGGTGCCCACCACCGTGTCCGACACTTTCCCGAACGCGTCTAGCACC
TGTTTGCGCTCGGCTTCGGTTATGGTCATGGTCTTCGATGAGAACGCGTCGCGACGCGTCTGAAA
AGAGAAAAGACGCGAGGGAGGGGAGGAATGGAGAAAGTTGTACGAGTGGAAGCCAGTGGTGTAGG
TGGTTAGTAGAGGCTACGTGTATCAGAGTCTCGTGTGGGCGAGACCCCTGCCCACATTGGTAGAA
TACAGCTAGCTAGTATTAATTGTTTACGAGATTTAAGCTCAAATGGCATGGTATAGGGTTCAATG
CCTGGGTGTTTACGAATATTGATTGACTTTATAAATCGTACACCGTCTTCATCATATTTTACTTT
ACTTTACCCCAATCTTCTCTAATCCACTCTGTTTTACGCTCACCTTCTCCGACTACTATTCCTTT
GGAATTCCTGTTTCATTCTTTCAGCCTTCTCTTTGATCTCCATCT
Right flanking sequence: Indices 45140 -- 45639
TTCTCGTCTTCCCTTCTCTCTGTCCTCTTTCCTATCTCTTCCCTCTGTTTTCCTTCCTTCTTCGT
CATCCCTCTTTCTCTCATTCAATGATTCCCTCTACCAGTCCCATGCTCTACCTCCTCGCCTATCA
GCCACACGGCATCGGTTTATAAATTGTATAATTAGTGTACAAGCTCACGCCTCGGTGGCAGGAGC
AGCCTCAGCGACATCGGCCTCAGCAACAGCCTGGGTGGCCCCCTTGGTGGCCTCCGCAGCAGCCT
CGGTGGTCTCAGCAGCGGTGGGGGCAGCAGCAGGGGCAGCGTCGGCAGCACCAGCGGTCTCGGAC
GCCTCGGGGGTGTCCTCGATCGCCTGCTCGTCGGCCTTCTCCTCCTTCTTGCCCTCGAACTTTCT
CTTCTTGTGGTTCTTCTTGTCGTTGAACGAGTTGCGTCTCTTGGTGACGTCATTGACACCGAAAC
GCTTCAGGGTCTCCCGCAACTCGCGGAACGCCAAGAGAGACATCT
Found at i:47635 original size:14 final size:15
Alignment explanation
Indices: 47601--47639 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
47591 CTACATCGTG
*
47601 TTCAGGCTAACGAAT
1 TTCAGGCTACCGAAT
47616 TTCAGGCTACCGAA-
1 TTCAGGCTACCGAAT
47630 TTCAGGCTAC
1 TTCAGGCTAC
47640 AAAAATCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (15 bp):
TTCAGGCTACCGAAT
Left flanking sequence: Indices 47101 -- 47600
CAACGTCAACACGTTGGTCAAAAAGATCGACAATTTGTACGCCATTGAGACGGTGGACCTGTTGA
AGAAGGCCAAGAAAGCCAACAACACCCGCAAGGAGATGGGCGCCGCCAAGATCAAGGTGTTTTTG
CAGTACAACACCAGCGGAGAGGCCCAGAAGGCCGGGTTTGGCCTGGTGGACGAGGTGGCAGAGTG
TGCCCAGTGGTTGTTGCTGGAGGAGGCACTGGCGCTAGAGCTCGAGGGGCTTATGACCATTGGCT
CGTTTGCCGAGTCCACCTCCGACGAGGAGAACAAGGACTTTGCTACGCTTGTAGACGTCAAGAAG
CAGCTTGACGAGAAGTTGGGCACGAGCTTGACGCTCTCGATGGGGATGTCCCACGACTACGTGAC
TGCCATTGGCCAGGGGAGCACCAACGTGCGGGTGGGTTCGTCGATCTTCGGTGCTAGACCCCCCA
AGAACTAGAGTTTAGATTCATGGACTAAAGCGGTACTACATCGTG
Right flanking sequence: Indices 47640 -- 48139
AAAAATCATAATAGTCGAACAATATATCAAATAAATAGGAATAACAACTTAAACAAGGATAACAG
CCTCAAACAAGGCTTTTGATGGCTTTAATGGCTTCAACAAGGCTTTAGGCCAGGACCGAAAATGA
CGCTAAAATGCGAAAATCAGGCAAAAAGTACAGAAACAAGGAGAACGAGCGCAGAGAGCTTGGAC
ACAGAATTATTCGTGGCGCTCGCCTCGGAAAGGATCGACGGGGCTGCCGAAGACCCCCCGGTGGG
CTGGCTGGTCACAGTGGTGACAGCGACAGAACCGGGATGCACGGTCACAACATTACCAGACGCGT
CGGTGGTTACACCAGAAACAGGGTGTTCCAGAGGGTTGGGGGCGTTGGTGACCACAGAAGTAGTA
GAAACCAACACGCCCTTTTCGTCGGTGGTGACGTCCACGATCCCCTTGGCGGTGGTGGTCTTGCC
GTCGGTACCCGTGGTGGTGACCATGGTGGTGGCCTGGGAGCACAG
Found at i:48510 original size:21 final size:21
Alignment explanation
Indices: 48468--48510 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
48458 AGTCCAGGTT
* *
48468 GTGGGCTCCACGGGGGTGGTG
1 GTGGGCTCCACGGGAGTAGTG
48489 GTGGGCTCCACGGGAGTAGTG
1 GTGGGCTCCACGGGAGTAGTG
48510 G
1 G
48511 AGAGTGTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.19, G:0.53, T:0.19
Consensus pattern (21 bp):
GTGGGCTCCACGGGAGTAGTG
Left flanking sequence: Indices 47968 -- 48467
TGGTTACACCAGAAACAGGGTGTTCCAGAGGGTTGGGGGCGTTGGTGACCACAGAAGTAGTAGAA
ACCAACACGCCCTTTTCGTCGGTGGTGACGTCCACGATCCCCTTGGCGGTGGTGGTCTTGCCGTC
GGTACCCGTGGTGGTGACCATGGTGGTGGCCTGGGAGCACAGCACGCAAAGCTCGCGCGTTCTCG
TAGATACCTTGCCATCGGAGTTGGTGACAACCTCGACGATCCCAGTCTGGGTGGTGGGCTTACCG
TCCTTGGTCGTGGGGTAGGTGACCGTGGACGGGGCCACGTAGGTGGTGGTGGCCACCACGCCGTC
CGTGTCGGTCACCACGTCCACGATGCCCGACCGAGTCACGGAGCTGCCACGGGAGTCGGTGGTGA
CCCATGACGTAGGTGTTCTCGTGGCGAAGGTTGACGTCACACCACCAGTGCGGTCGACAATGCCA
GAGTACGTCGCGGAGCTGCCCTTAGAGTCAGTGGTAGTCCAGGTT
Right flanking sequence: Indices 48511 -- 49010
AGAGTGTCGAAATCACACCACCAGTGCGGTCAACTATTCCAGAATACGTCGCGGAAGTGCCGTCG
GAGCCAGTGGTGGTCCACGTAGAAACAGTGCCCGTTGCCAGAGGCAACACAGACGTCAGACCCTT
GGTCCGGTCAACGATACCCGTGTTGGTAACCACACCACCAGTGGGGTCGGTCGTAACCCAGGTGG
TGGTCTCGCCAGTGGCTCGAGAGAACGTCGACGTCAGACCCTTGGTCCGGTCCACAATGCCAGAG
TTAGTGAGCACACCGCCAGTGGGGTCGGTGGTGGTCCACGTCGTAGCACTCTCGGGAGAGAGCGT
GGACGTCGAGACGAGCGTTGCCGTTGTCACATCCACGATACCGGATCCAGTAGTGGTGCTGCCCT
TCGGGTCAGTGGTGGTCCATGTAGTGAGGCTACCCGCGGGGAACGTCGAGGTCGAGGTTGTCAAC
GACCCGTGTGTGTCTGTGATAACCGCGACAATCCCTGAGCCAGTC
Found at i:49102 original size:123 final size:122
Alignment explanation
Indices: 48960--49618 Score: 440
Period size: 123 Copynumber: 5.2 Consensus size: 122
48950 GGTCGAGGTT
** * *
48960 GTCAACGACCCGTGTGTGTCTGTGATAACCGCGACAATCCCTGAGCCAGTCAGCAAATTACCATT
1 GTCAACGACCCGTCAGTGTCAGTGATAACCGCAACAATCCCTGA-CCAGTCAGCAAATTACCATT
* *
49025 GGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAAGTCGAAGTG
65 GGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGGTTGAAGTG
* * * ** ** * ** * *
49083 GTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACT-ACCAGTCAGGAGCTGACC-G
1 GTCAACGACCCGTCAGTGTCAGTGATAACCGCAACAAT-CC-CTGACCAGTCAGCAAATTACCAT
* * * * *
49146 TCG-GTACCGGTGGTGGTCCAAGTGGTG-G-CCTTATCAGAAGAAGAGCCCGGAATGGTCGAGGT
64 TGGAGT-CC-GTGGTGGTCCAAGTGGTGAGAAC--ACCAG-AG--G-G---GTAA--GTGGAGGT
49208 TGAAGTG
116 TGAAGTG
* ** * * *
49215 GTCAACGATCCGTGTGTGTCAGTGATGACCGCAACAAGCCCCGAACCAGTCAGCAAATTACCATT
1 GTCAACGACCCGTCAGTGTCAGTGATAACCGCAACAATCCCTG-ACCAGTCAGCAAATTACCATT
*
49280 GGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAAAGTGGAGGTTGAAGTG
65 GGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGGTTGAAGTG
* * * ** * **
49338 GTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACT-ACCGGTCAGGAGCTGACCGT
1 GTCAACGACCCGTCAGTGTCAGTGATAACCGCAACAAT-CC-CTGACCAGTC---AGC--A-AAT
* * * * * *
49402 CGGTGCCAGTGGTAGTCCAGGTGGTGG-CCTTATCGTCGGT-TGAAGA--AGAGCCCGG-AATGG
58 ---TACCATTGG-AGTCC--GTGGTGGTCC--A-AGT-GGTGAGAACACCAGAG--GGGTAA--G
*
49462 TCGAGGTTGAAGTG
109 TGGAGGTTGAAGTG
* ** *
49476 GTCAACGATCCGTGTGTGTCAGTGATAACCGCGACAATCCCTGAGCCAGTCAGCAAATTACCATT
1 GTCAACGACCCGTCAGTGTCAGTGATAACCGCAACAATCCCTGA-CCAGTCAGCAAATTACCATT
49541 GGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGGTTGAAGTG
65 GGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGGTTGAAGTG
49599 GTCAACGACCCGTCAGTGTC
1 GTCAACGACCCGTCAGTGTC
49619 GGTGGTCACA
Statistics
Matches: 400, Mismatches: 86, Indels: 100
0.68 0.15 0.17
Matches are distributed among these distances:
121 3 0.01
122 5 0.01
123 146 0.37
124 15 0.04
125 9 0.02
126 15 0.04
127 3 0.01
128 7 0.02
129 9 0.02
130 4 0.01
131 4 0.01
132 83 0.21
133 11 0.03
134 5 0.01
135 14 0.04
136 5 0.01
137 11 0.03
138 51 0.13
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (122 bp):
GTCAACGACCCGTCAGTGTCAGTGATAACCGCAACAATCCCTGACCAGTCAGCAAATTACCATTG
GAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGGTTGAAGTG
Left flanking sequence: Indices 48460 -- 48959
TCCAGGTTGTGGGCTCCACGGGGGTGGTGGTGGGCTCCACGGGAGTAGTGGAGAGTGTCGAAATC
ACACCACCAGTGCGGTCAACTATTCCAGAATACGTCGCGGAAGTGCCGTCGGAGCCAGTGGTGGT
CCACGTAGAAACAGTGCCCGTTGCCAGAGGCAACACAGACGTCAGACCCTTGGTCCGGTCAACGA
TACCCGTGTTGGTAACCACACCACCAGTGGGGTCGGTCGTAACCCAGGTGGTGGTCTCGCCAGTG
GCTCGAGAGAACGTCGACGTCAGACCCTTGGTCCGGTCCACAATGCCAGAGTTAGTGAGCACACC
GCCAGTGGGGTCGGTGGTGGTCCACGTCGTAGCACTCTCGGGAGAGAGCGTGGACGTCGAGACGA
GCGTTGCCGTTGTCACATCCACGATACCGGATCCAGTAGTGGTGCTGCCCTTCGGGTCAGTGGTG
GTCCATGTAGTGAGGCTACCCGCGGGGAACGTCGAGGTCGAGGTT
Right flanking sequence: Indices 49619 -- 50118
GGTGGTCACATCAATGATACCACTGCCAGTCAGCAAATTACCGTCGGTACCGGTGGTGGTCCAGG
TGGTGGCCTTATCGTCCGTCGAAGAAGCGTCTGGAATGGTGGAAGTCGAAGTGGTCAACGACCCG
TCAGTGTCGGTAGTCACATCAACAATGCCACTGCCGGTCAGCAAATTACCGTCGGTGCCAGTGGT
GGTCCAGGTGGTGGCCTTATCATTCGTCGATGAAGAGCCCGGAATGGTGGAAGTCGAAGTGGTCA
ACGACCCGTTTGCGTCAGTGGTAACCGCGACAATCCCCGAGCCCGTCAGCAAGTTGCCGTCGGTG
TCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAAAGTGGAGGTTGAAGTGGTCAACGACCC
GTCAGTGTCGGTGGTCACATCAATGATACCACTGCCAGTCAGGAGCTGACCGTCGGTACCGGTGG
TAGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCATCTGGAA
Found at i:49574 original size:261 final size:260
Alignment explanation
Indices: 48945--49749 Score: 1242
Period size: 261 Copynumber: 3.1 Consensus size: 260
48935 CGCGGGGAAC
* * *
48945 GTCGAGGTCGAGGTTGTCAACGACCCGTGTGTGTCTGTGATAACCGCGACAATCCCTGAGCCAGT
1 GTCGAGGTCGAAGTGGTCAACGACCCGTGTGTGTCAGTGATAACCGCGACAATCCCTGAGCCAGT
*
49010 CAGCAAATTACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAAG
66 CAGCAAATTACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGG
*
49075 TCGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTACCAGTCAGGAGC
131 TTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTACCAGTCAGGAGC
*
49140 TGACCGTCGGTACCGGTGGTGGTCCAAGTGGTGGCCTTA---TC--AGAAGAAGAGCCCGGAATG
196 TGACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCGTAGAAGAAGAGCCCGGAATG
* * * * * * *
49200 GTCGAGGTTGAAGTGGTCAACGATCCGTGTGTGTCAGTGATGACCGCAACAAGCCCCGAACCAGT
1 GTCGAGGTCGAAGTGGTCAACGACCCGTGTGTGTCAGTGATAACCGCGACAATCCCTGAGCCAGT
*
49265 CAGCAAATTACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAAAGTGGAGG
66 CAGCAAATTACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGG
** * *
49330 TTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCGGTCAGGAGC
131 TTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTACCAGTCAGGAGC
* * * *
49395 TGACCGTCGGTGCCAGTGGTAGTCCAGGTGGTGGCCTTATCGTCGGTTGAAGAAGAGCCCGGAAT
196 TGACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTC-GTAGAAGAAGAGCCCGGAAT
49460 G
260 G
* *
49461 GTCGAGGTTGAAGTGGTCAACGATCCGTGTGTGTCAGTGATAACCGCGACAATCCCTGAGCCAGT
1 GTCGAGGTCGAAGTGGTCAACGACCCGTGTGTGTCAGTGATAACCGCGACAATCCCTGAGCCAGT
49526 CAGCAAATTACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGG
66 CAGCAAATTACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGG
* * **
49591 TTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCAGTCAGCAAA
131 TTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTACCAGTCAGGAGC
* * * * *
49656 TTACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCGTCTGGAAT
196 TGACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGT-CGTAGAAGAAGAGCCCGGAAT
49721 G
260 G
* *
49722 GTGGAAGTCGAAGTGGTCAACGACCCGT
1 GTCGAGGTCGAAGTGGTCAACGACCCGT
49750 CAGTGTCGGT
Statistics
Matches: 495, Mismatches: 48, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
255 213 0.43
258 2 0.00
261 279 0.56
262 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.21
Consensus pattern (260 bp):
GTCGAGGTCGAAGTGGTCAACGACCCGTGTGTGTCAGTGATAACCGCGACAATCCCTGAGCCAGT
CAGCAAATTACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGG
TTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTACCAGTCAGGAGC
TGACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCGTAGAAGAAGAGCCCGGAATG
Left flanking sequence: Indices 48445 -- 48944
TAGAGTCAGTGGTAGTCCAGGTTGTGGGCTCCACGGGGGTGGTGGTGGGCTCCACGGGAGTAGTG
GAGAGTGTCGAAATCACACCACCAGTGCGGTCAACTATTCCAGAATACGTCGCGGAAGTGCCGTC
GGAGCCAGTGGTGGTCCACGTAGAAACAGTGCCCGTTGCCAGAGGCAACACAGACGTCAGACCCT
TGGTCCGGTCAACGATACCCGTGTTGGTAACCACACCACCAGTGGGGTCGGTCGTAACCCAGGTG
GTGGTCTCGCCAGTGGCTCGAGAGAACGTCGACGTCAGACCCTTGGTCCGGTCCACAATGCCAGA
GTTAGTGAGCACACCGCCAGTGGGGTCGGTGGTGGTCCACGTCGTAGCACTCTCGGGAGAGAGCG
TGGACGTCGAGACGAGCGTTGCCGTTGTCACATCCACGATACCGGATCCAGTAGTGGTGCTGCCC
TTCGGGTCAGTGGTGGTCCATGTAGTGAGGCTACCCGCGGGGAAC
Right flanking sequence: Indices 49750 -- 50249
CAGTGTCGGTAGTCACATCAACAATGCCACTGCCGGTCAGCAAATTACCGTCGGTGCCAGTGGTG
GTCCAGGTGGTGGCCTTATCATTCGTCGATGAAGAGCCCGGAATGGTGGAAGTCGAAGTGGTCAA
CGACCCGTTTGCGTCAGTGGTAACCGCGACAATCCCCGAGCCCGTCAGCAAGTTGCCGTCGGTGT
CCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAAAGTGGAGGTTGAAGTGGTCAACGACCCG
TCAGTGTCGGTGGTCACATCAATGATACCACTGCCAGTCAGGAGCTGACCGTCGGTACCGGTGGT
AGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCATCTGGAATGGTCGAGGTTGAAGTGGTCA
ACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCAGTCAGGAGCTGACCGTCGGTA
CCGGTGGTGGTCCAAGTGGTGACGATCGTGCTATCAGAACTCTTC
Found at i:49813 original size:138 final size:138
Alignment explanation
Indices: 49584--50225 Score: 672
Period size: 138 Copynumber: 4.8 Consensus size: 138
49574 AGAGGGGTAA
**
49584 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCAGT
1 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATACCACTGCCAGT
49649 CAGCAAATTACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCGT
66 CAGCAAATTACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCGT
49714 CTGGAATG
131 CTGGAATG
* * * * *
49722 GTGGAAGTCGAAGTGGTCAACGACCCGTCAGTGTCGGTAGTCACATCAACAATGCCACTGCCGGT
1 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATACCACTGCCAGT
* * * * * * *
49787 CAGCAAATTACCGTCGGTGCCAGTGGTGGTCCAGGTGGTGGCCTTATCATTCGTCGATGAAGAGC
66 CAGCAAATTACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCGT
*
49852 CCGGAATG
131 CTGGAATG
* * ** * * * ** * * * *
49860 GTGGAAGTCGAAGTGGTCAACGACCCGTTTGCGTCAGTGGTAACCGCGACAAT-CCCCGAGCCCG
1 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATACCAC-TGCCAG
* * * * * *
49924 TCAGCAAGTTGCCGTCGGTGTCC-GTGGTGGTCCAAGTGGTGAG----AAC--AC--C--AG-AG
65 TCAGCAAATTACCGTCGGT-ACCGGTGGTGGTCCAGGTGGTG-GCCTTATCGTCCGTCGAAGAAG
*
49977 -G---GGAA-A
128 CGTCTGGAATG
**
49983 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCAGT
1 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATACCACTGCCAGT
* ** * * *
50048 CAGGAGCTGACCGTCGGTACCGGTGGTAGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCAT
66 CAGCAAATTACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCGT
50113 CTGGAATG
131 CTGGAATG
* * *
50121 GTCGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCAGT
1 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATACCACTGCCAGT
* ** * *
50186 CAGGAGCTGACCGTCGGTACCGGTGGTGGTCCAAGTGGTG
66 CAGCAAATTACCGTCGGTACCGGTGGTGGTCCAGGTGGTG
50226 ACGATCGTGC
Statistics
Matches: 414, Mismatches: 69, Indels: 42
0.79 0.13 0.08
Matches are distributed among these distances:
122 3 0.01
123 75 0.18
124 7 0.02
126 2 0.00
127 1 0.00
128 3 0.01
129 1 0.00
130 1 0.00
131 1 0.00
132 2 0.00
133 3 0.01
135 2 0.00
137 7 0.02
138 303 0.73
139 3 0.01
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (138 bp):
GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATACCACTGCCAGT
CAGCAAATTACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCGT
CTGGAATG
Left flanking sequence: Indices 49084 -- 49583
TCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTACCAGTCAGGAGCTGACCGTCG
GTACCGGTGGTGGTCCAAGTGGTGGCCTTATCAGAAGAAGAGCCCGGAATGGTCGAGGTTGAAGT
GGTCAACGATCCGTGTGTGTCAGTGATGACCGCAACAAGCCCCGAACCAGTCAGCAAATTACCAT
TGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAAAGTGGAGGTTGAAGTGGTCAAC
GACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCGGTCAGGAGCTGACCGTCGGTGCC
AGTGGTAGTCCAGGTGGTGGCCTTATCGTCGGTTGAAGAAGAGCCCGGAATGGTCGAGGTTGAAG
TGGTCAACGATCCGTGTGTGTCAGTGATAACCGCGACAATCCCTGAGCCAGTCAGCAAATTACCA
TTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAA
Right flanking sequence: Indices 50226 -- 50725
ACGATCGTGCTATCAGAACTCTTCAAAGACTGGTCGGAACCAGTTGTCGTGGGTTCAACAGTATT
TTCGACACCACTCTCCAGCACAGTGGCGGCAGTATCAGGGAAAGTCGACGTCGATGTCGACGCTA
AACCGGCCGAGTCAGTTGTGACTGCTACAAGACCAGAGTGGATTAAGGTTTTACCCTGTGCATCG
ACTGTAGTCCACGTTGTAAGGATCGCTACAGGTGGCATTGAAGTTGGCAGCGTAGTGGTGACGCT
CCCATCCGGGATGGTGGACGTTGAAGTCACCAACGACCCGTCTGAGTCAGTGGTGACATCAACAA
TGCCAGACCCCGTTGAGAGGTTACCGTCAGTGTCAGTAGTGGTCCAAGAATGCACCTCAGAGTTT
GTGGAAGCATTGATACCACCCTCTACACCGTCACCGGAGGACTCAGGAATGGTCGAAGTCGAGGT
TGTCTCGGAGCCTTCAGAGTCGGTCGTCACGTCAACAATACCAGA
Found at i:49813 original size:399 final size:399
Alignment explanation
Indices: 49323--50225 Score: 1448
Period size: 399 Copynumber: 2.3 Consensus size: 399
49313 AGAGGGGAAA
49323 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCGGT
1 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCGGT
* *
49388 CAGGAGCTGACCGTCGGTGCCAGTGGTAGTCCAGGTGGTGGCCTTATC-GTCGGTTGAAGAAGAG
66 CAGGAGCTGACCGTCGGTGCCAGTGGTGGTCCAGGTGGTGGCCTTATCAGTC-GTCGAAGAAGAG
* * * *
49452 CCCGGAATGGTCGAGGTTGAAGTGGTCAACGATCCGTGTGTGTCAGTGATAACCGCGACAATCCC
130 CCCGGAATGGTCGAAGTCGAAGTGGTCAACGACCCGTGTGCGTCAGTGATAACCGCGACAATCCC
* * *
49517 TGAGCCAGTCAGCAAATTACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGT
195 CGAGCCAGTCAGCAAATTACCATCGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGA
49582 AAGTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCA
260 AAGTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCA
* *
49647 GTCAGCAAATTACCGTCGGTACCGGTGGTGGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGC
325 GTCAGCAAATGACCGTCGGTACCGGTGGTAGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGC
*
49712 GTCTGGAATG
390 ATCTGGAATG
* * * *
49722 GTGGAAGTCGAAGTGGTCAACGACCCGTCAGTGTCGGTAGTCACATCAACAATGCCACTGCCGGT
1 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCGGT
* ** * * *
49787 CAGCAAATTACCGTCGGTGCCAGTGGTGGTCCAGGTGGTGGCCTTATCATTCGTCGATGAAGAGC
66 CAGGAGCTGACCGTCGGTGCCAGTGGTGGTCCAGGTGGTGGCCTTATCAGTCGTCGAAGAAGAGC
* * *
49852 CCGGAATGGTGGAAGTCGAAGTGGTCAACGACCCGTTTGCGTCAGTGGTAACCGCGACAATCCCC
131 CCGGAATGGTCGAAGTCGAAGTGGTCAACGACCCGTGTGCGTCAGTGATAACCGCGACAATCCCC
* * * * *
49917 GAGCCCGTCAGCAAGTTGCCGTCGGTGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAA
196 GAGCCAGTCAGCAAATTACCATCGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAA
49982 AGTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCAG
261 AGTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCAG
* **
50047 TCAGGAGCTGACCGTCGGTACCGGTGGTAGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCA
326 TCAGCAAATGACCGTCGGTACCGGTGGTAGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCA
50112 TCTGGAATG
391 TCTGGAATG
* *
50121 GTCGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCAGT
1 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCGGT
* * *
50186 CAGGAGCTGACCGTCGGTACCGGTGGTGGTCCAAGTGGTG
66 CAGGAGCTGACCGTCGGTGCCAGTGGTGGTCCAGGTGGTG
50226 ACGATCGTGC
Statistics
Matches: 457, Mismatches: 46, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
399 455 1.00
400 2 0.00
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (399 bp):
GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCCACTACCGGT
CAGGAGCTGACCGTCGGTGCCAGTGGTGGTCCAGGTGGTGGCCTTATCAGTCGTCGAAGAAGAGC
CCGGAATGGTCGAAGTCGAAGTGGTCAACGACCCGTGTGCGTCAGTGATAACCGCGACAATCCCC
GAGCCAGTCAGCAAATTACCATCGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAA
AGTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCAG
TCAGCAAATGACCGTCGGTACCGGTGGTAGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCA
TCTGGAATG
Left flanking sequence: Indices 48823 -- 49322
CGGGAGAGAGCGTGGACGTCGAGACGAGCGTTGCCGTTGTCACATCCACGATACCGGATCCAGTA
GTGGTGCTGCCCTTCGGGTCAGTGGTGGTCCATGTAGTGAGGCTACCCGCGGGGAACGTCGAGGT
CGAGGTTGTCAACGACCCGTGTGTGTCTGTGATAACCGCGACAATCCCTGAGCCAGTCAGCAAAT
TACCATTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAAGTCGAAGTG
GTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTACCAGTCAGGAGCTGACCGTC
GGTACCGGTGGTGGTCCAAGTGGTGGCCTTATCAGAAGAAGAGCCCGGAATGGTCGAGGTTGAAG
TGGTCAACGATCCGTGTGTGTCAGTGATGACCGCAACAAGCCCCGAACCAGTCAGCAAATTACCA
TTGGAGTCCGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAAA
Right flanking sequence: Indices 50226 -- 50725
ACGATCGTGCTATCAGAACTCTTCAAAGACTGGTCGGAACCAGTTGTCGTGGGTTCAACAGTATT
TTCGACACCACTCTCCAGCACAGTGGCGGCAGTATCAGGGAAAGTCGACGTCGATGTCGACGCTA
AACCGGCCGAGTCAGTTGTGACTGCTACAAGACCAGAGTGGATTAAGGTTTTACCCTGTGCATCG
ACTGTAGTCCACGTTGTAAGGATCGCTACAGGTGGCATTGAAGTTGGCAGCGTAGTGGTGACGCT
CCCATCCGGGATGGTGGACGTTGAAGTCACCAACGACCCGTCTGAGTCAGTGGTGACATCAACAA
TGCCAGACCCCGTTGAGAGGTTACCGTCAGTGTCAGTAGTGGTCCAAGAATGCACCTCAGAGTTT
GTGGAAGCATTGATACCACCCTCTACACCGTCACCGGAGGACTCAGGAATGGTCGAAGTCGAGGT
TGTCTCGGAGCCTTCAGAGTCGGTCGTCACGTCAACAATACCAGA
Found at i:50202 original size:261 final size:261
Alignment explanation
Indices: 49722--50226 Score: 622
Period size: 261 Copynumber: 1.9 Consensus size: 261
49712 GTCTGGAATG
* *
49722 GTGGAAGTCGAAGTGGTCAACGACCCGTCAGTGTCGGTAGTCACATCAACAATGCCACTGCCGGT
1 GTGGAAGTCGAAGTGGTCAACGACCCGTCAGTGTCGGTAGTCACATCAACAATACCACTGCCAGT
* * * * *
49787 CAGCAAATTACCGTCGGTGCCAGTGGTGGTCCAGGTGGTGGCCTTATCATTCGTCGATGAAGAGC
66 CAGCAAATGACCGTCGGTACCAGTGGTAGTCCAGGTGGTGGCCTTATCATCCGTCGAAGAAGAGC
* ** * * *
49852 CCGGAATGGTGGAAGTCGAAGTGGTCAACGACCCGTTTGCGTCAGTGGTAACCGCGACAATCCCC
131 CCGGAATGGTCGAAGTCGAAGTGGTCAACGACCCGTCAGCGTCAGTGGTAACAGCAACAATCCAC
* * *
49917 GAGCCCGTCAGCAAGTTGCCGTCGGTGTCC-GTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGA
196 GAGCCAGTCAGCAAGCTGCCGTCGGT-ACCGGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGA
49981 AA
260 AA
* * * **
49983 GTGGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAATGATACCACTGCCAGT
1 GTGGAAGTCGAAGTGGTCAACGACCCGTCAGTGTCGGTAGTCACATCAACAATACCACTGCCAGT
* ** * *
50048 CAGGAGCTGACCGTCGGTACCGGTGGTAGTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCA-
66 CAGCAAATGACCGTCGGTACCAGTGGTAGTCCAGGTGGTGGCCTTATCATCCGTCGAAGAAG-AG
* * * * * * * *
50112 TCTGGAATGGTCGAGGTTGAAGTGGTCAACGACCCGTCAGTGTCGGTGGTCACATCAACAATGCC
130 CCCGGAATGGTCGAAGTCGAAGTGGTCAACGACCCGTCAGCGTCAGTGGTAACAGCAACAAT-CC
* *
50177 ACTA-CCAGTCAG-GAGCTGACCGTCGGTACCGGTGGTGGTCCAAGTGGTGA
194 ACGAGCCAGTCAGCAAGCTG-CCGTCGGTACCGGTGGTGGTCCAAGTGGTGA
50227 CGATCGTGCT
Statistics
Matches: 204, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
260 6 0.03
261 193 0.95
262 5 0.02
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (261 bp):
GTGGAAGTCGAAGTGGTCAACGACCCGTCAGTGTCGGTAGTCACATCAACAATACCACTGCCAGT
CAGCAAATGACCGTCGGTACCAGTGGTAGTCCAGGTGGTGGCCTTATCATCCGTCGAAGAAGAGC
CCGGAATGGTCGAAGTCGAAGTGGTCAACGACCCGTCAGCGTCAGTGGTAACAGCAACAATCCAC
GAGCCAGTCAGCAAGCTGCCGTCGGTACCGGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAA
A
Left flanking sequence: Indices 49222 -- 49721
ATCCGTGTGTGTCAGTGATGACCGCAACAAGCCCCGAACCAGTCAGCAAATTACCATTGGAGTCC
GTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGAAAGTGGAGGTTGAAGTGGTCAACGACCCGTC
AGTGTCGGTGGTCACATCAACAATGCCACTACCGGTCAGGAGCTGACCGTCGGTGCCAGTGGTAG
TCCAGGTGGTGGCCTTATCGTCGGTTGAAGAAGAGCCCGGAATGGTCGAGGTTGAAGTGGTCAAC
GATCCGTGTGTGTCAGTGATAACCGCGACAATCCCTGAGCCAGTCAGCAAATTACCATTGGAGTC
CGTGGTGGTCCAAGTGGTGAGAACACCAGAGGGGTAAGTGGAGGTTGAAGTGGTCAACGACCCGT
CAGTGTCGGTGGTCACATCAATGATACCACTGCCAGTCAGCAAATTACCGTCGGTACCGGTGGTG
GTCCAGGTGGTGGCCTTATCGTCCGTCGAAGAAGCGTCTGGAATG
Right flanking sequence: Indices 50227 -- 50726
CGATCGTGCTATCAGAACTCTTCAAAGACTGGTCGGAACCAGTTGTCGTGGGTTCAACAGTATTT
TCGACACCACTCTCCAGCACAGTGGCGGCAGTATCAGGGAAAGTCGACGTCGATGTCGACGCTAA
ACCGGCCGAGTCAGTTGTGACTGCTACAAGACCAGAGTGGATTAAGGTTTTACCCTGTGCATCGA
CTGTAGTCCACGTTGTAAGGATCGCTACAGGTGGCATTGAAGTTGGCAGCGTAGTGGTGACGCTC
CCATCCGGGATGGTGGACGTTGAAGTCACCAACGACCCGTCTGAGTCAGTGGTGACATCAACAAT
GCCAGACCCCGTTGAGAGGTTACCGTCAGTGTCAGTAGTGGTCCAAGAATGCACCTCAGAGTTTG
TGGAAGCATTGATACCACCCTCTACACCGTCACCGGAGGACTCAGGAATGGTCGAAGTCGAGGTT
GTCTCGGAGCCTTCAGAGTCGGTCGTCACGTCAACAATACCAGAA
Found at i:50924 original size:147 final size:145
Alignment explanation
Indices: 50657--52816 Score: 1965
Period size: 147 Copynumber: 14.8 Consensus size: 145
50647 CACCGGAGGA
* * * *
50657 CTCAGGAATG-GTCGAAGTCGAGGTTGTCTCGGAGCCTTCAGAGTCGGTCGTCACGTCAACAATA
1 CTCAGGAA-GAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATA
* * * * * *
50721 CCAGAACCAACAGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCCTCGGT
65 CCAGAACCATC-GAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGT
*
50786 GGACGAAGGCTCCAAAGT
129 GGAAGAAGGCT-CAAAGT
* * *
50804 CTCAGGAAGAGTCGAGGTCGAGGACGTCTCAGAGCCTTCAGAGTCGGTCGTCACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * *
50869 CAGAGCCAGTCGAAGTGCTACCTTTAGTGTCAGTGGTAGTCCAGGTGGTGACACTCTCTTCAATG
66 CAGAACCA-TCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
50934 GAAGAAGGCTCAGAAGT
130 GAAGAAGGCTCA-AAGT
* * * *
50951 CTCAGGAAGAGTCGAGGTCGAGGTCGTCTCAGAGCCTTCAGAGTCGGTGGTGACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * ** * *
51016 CAGAGCCAGTCGAAGTGCTACCTTCAGTGTCGGTAGTGGTCCAGGTAGTGACACTCTCGTCAATG
66 CAGAACCA-TCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
51081 GAAGAAGGCTCAGAAGT
130 GAAGAAGGCTCA-AAGT
* * *
51098 CTCAGGGAGAGTCGAAGTCGAGGTCGTCTCGGAGCCCTCAGAGTCAGTCGTCACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * * * *
51163 CCGAGCCAACGGAAGTGCTACCCTCGGTGTCGGTGGAAGTCCAGGTGGTAACACT-TC--CA-TC
66 CAGAACCATC-GAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGT-
** * ** *
51224 GG-A-ACCGTTGGAAGA
129 GGAAGAAGGCTCAAAGT
* * * * * *
51239 CTCAGGGAGAGTTGAAGTTGAGGTCGTCTCAGAGCCTTCAGAATCAGTCGTCACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * * * * * *
51304 CCGAGCCAATGGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAAGTAGTGACACTCTCTTCAATG
66 CAGAACC-ATCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
*
51369 GAAGAAGGCTCCGAAGT
130 GAAGAAGGCT-CAAAGT
* * *
51386 CTCAGGAAGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCAGTCGTCACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * * * * **
51451 CCGAGCCAACGGAAGTGCTACCCTCGGTGTCGGTGGAAGTCCAGGTGGT-A-ACACTC-TCAACG
66 CAGAACCATC-GAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
** * ** *
51513 G-A-ACCGTTGGAAGA
130 GAAGAAGGCTCAAAGT
* * *
51527 CTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCAGTCGTCACATCAACGATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * * * * *
51592 CCGAACCAACAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCTCTTCAATG
66 CAGAACCATC-GAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
51657 GAAGAAGGCTCAGAAGT
130 GAAGAAGGCTCA-AAGT
* * * *
51674 CTCAGGAAGAGTCGAGGTCGAGGTCGTCTCAGAGCCTTCAGAGTCGGTGGTGACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * ** * * *
51739 CAGAGCCAGTCGAAGTGCTACCTTCAGTGTCGGTAGTGGTCCAGGTAGTGACACTCTCTTCAATG
66 CAGAACCA-TCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
51804 GAAGAAGGCTCAGAAGT
130 GAAGAAGGCTCA-AAGT
* * *
51821 CTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTGGTGACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * * * * * * **
51886 CAGAACCAACGGAACTGCTACCTTCGGTGTCGGTGGTAGTCCAAGTAGTGACACTTTCGTCCGCA
66 CAGAACCATC-GAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
* * * ** *
51951 GAGGAAATGTTGGAAGA
130 GAAG-AAGGCTCAAAGT
* * * * *
51968 CTCGGGAAGAGTCGAGGTGGAGGTCGTCTCAGAACCCTCAGAGTCGGTCGTCACGTCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * *
52033 CAGAACCAACGGAAGTGCTACCTTCGGTGTCAGTGGAAGTCCAAGTGGTAACACT-TC--CA-TC
66 CAGAACCATC-GAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGT-
** * ** *
52094 GG-A-ACCGTTGGAAGA
129 GGAAGAAGGCTCAAAGT
* * *
52109 CTCAGGGAGAGTTGAAGTCGTA-GTCGTCTCAGAACCCTCAGAGTCGGTCGTCACATCAACAATA
1 CTCAGGAAGAGTCGAAGTCG-AGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATA
* * * * * * * *
52173 CCCGAACCAGTCGAAGTACTACCCTCTGAGTCAGTTGAAGTCCAGGTAGTGACACTCTCGTCAGC
65 CCAGAACCA-TCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGT
* *
52238 GGATG-AGGACTCCGAAGT
129 GGAAGAAGG-CT-CAAAGT
* * * * * * * *
52256 CTCGGGAAGAGTCGAAGTCGAGGTCGTCTCGGAACCTTCAGAGTCGGTGGTGACGTCTACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * * * **
52321 CAGAACCAGTCGAAGTGCTACCTTCAGTATCGGTGGTAGTCCAAGTGGTAACACTCTCGTCCGCA
66 CAGAACCA-TCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
* * * *
52386 GAGGAATTG-TCGGAAGA
130 GAAGAA-GGCTC-AAAGT
*
52403 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAACCCTCAGAGTCGGTCGTCACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * * * * *
52468 CAGAACCAGTCGAAGTACTACCCTCTGAGTCAGTTGAAGTCCAGGTAGTGACACTCTCTTCAATG
66 CAGAACCA-TCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
52533 GAAGAAGGCTCAGAAGT
130 GAAGAAGGCTCA-AAGT
* * * *
52550 CTCAGGGAGAGTCGAAGTCGAGGTCGTCTCGGAACCCTCAGAGTCAGTCGTCACATCAACAATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * *
52615 CAGAACCAACGGAAGTGCTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTC--T-
66 CAGAACCATC-GAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTG
** *
52677 GAAGAAGAGTCGTTTGAAGA
130 GAAGAAG-G-C--TCAAAGT
* * * * * * * * *
52697 CTCAGGTAGAGTTGAAGTCGTGGTGGTCTCAGAACCCTCGGAGTCAGTTGTCACATCAACGATAC
1 CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
* * * * * * ** *
52762 CCGAGCCAGTGGACGTACTACCTTCAGTGTCGGTGGTGGTCCAAGTGGTGACACT
66 CAGAACCA-TCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACT
52817 TTCAATAGTT
Statistics
Matches: 1696, Mismatches: 271, Indels: 92
0.82 0.13 0.04
Matches are distributed among these distances:
141 328 0.19
142 14 0.01
143 8 0.00
144 33 0.02
145 11 0.01
146 23 0.01
147 1270 0.75
148 8 0.00
149 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.21
Consensus pattern (145 bp):
CTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATAC
CAGAACCATCGAAGTGCTACCTTCAGTGTCAGTGGAAGTCCAGGTGGTGACACTCTCGTCAGTGG
AAGAAGGCTCAAAGT
Left flanking sequence: Indices 50157 -- 50656
GTGGTCACATCAACAATGCCACTACCAGTCAGGAGCTGACCGTCGGTACCGGTGGTGGTCCAAGT
GGTGACGATCGTGCTATCAGAACTCTTCAAAGACTGGTCGGAACCAGTTGTCGTGGGTTCAACAG
TATTTTCGACACCACTCTCCAGCACAGTGGCGGCAGTATCAGGGAAAGTCGACGTCGATGTCGAC
GCTAAACCGGCCGAGTCAGTTGTGACTGCTACAAGACCAGAGTGGATTAAGGTTTTACCCTGTGC
ATCGACTGTAGTCCACGTTGTAAGGATCGCTACAGGTGGCATTGAAGTTGGCAGCGTAGTGGTGA
CGCTCCCATCCGGGATGGTGGACGTTGAAGTCACCAACGACCCGTCTGAGTCAGTGGTGACATCA
ACAATGCCAGACCCCGTTGAGAGGTTACCGTCAGTGTCAGTAGTGGTCCAAGAATGCACCTCAGA
GTTTGTGGAAGCATTGATACCACCCTCTACACCGTCACCGGAGGA
Right flanking sequence: Indices 52817 -- 53316
TTCAATAGTTGAGCCATCGCTGCTAGTTTGCAGAGTAACACCACCCCCAATGGCATCAGGTATCA
ATGATGTCGATGTAACCAACGAGCCTGCGTTGTCGGTTGTTACCCGAACAACACCTGCCACAGTG
GTGAGGGAGCCATCCTCGGCGGTACTGGTCCACTCAGACGTGAACTCTGTACATTCAGGACAGCC
AGGGTTGGAAGGACGTGCGATAACGGATGTCATTGTGGTCAACCGTTTCTCAGAATCCGTGGTGA
CAATAACTACTCCTGAATCAGTGGCAACGTTCCCGTTGTCATCAGTCACAGTCCAAGTCTGCGTG
AATTGCGAACATTCGGAGCAGCCAGGATCCGACGGGCGTGCAATGACTGACGTCACGGTCACCAA
ATTCTTCTCCGCATCAGTGGTTACAATGACCAACCCGGAATCAGTTGCCACTTCACCTCTTTCAT
CAGTCACCGTCCAGGTTTGAGTGTATTCGGTACATTCAGCACAAG
Found at i:51206 original size:294 final size:292
Alignment explanation
Indices: 50667--52816 Score: 2308
Period size: 294 Copynumber: 7.4 Consensus size: 292
50657 CTCAGGAATG
* * * * *
50667 GTCGAAGTCGAGGTTGTCTCGGAGCCTTCAGAGTCGGTCGTCACGTCAACAATACCAGAACCA-A
1 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
* ** *
50731 CAGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCCTCGGTGGACGAAGGC
66 C-GAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGGC
* * * *
50796 TCCA-AAGTCTCAGGAAGAGTCGAGGTCGAGGACGTCTCAGAGCCTTCAGAGTCGGTCGTCACAT
130 T-CAGAAGTCTCAGGGAGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCGGTCGTCACAT
* ** * * *
50860 CAACAATACCAGAGCCAGTC-GAAGTGCTACCTTTAGTGTCAGTGGTAGTCCAGGTGGTGACACT
194 CAACAATACCAGAGCCA-ACGGAAGTGCTACCTTCGGTGTCGGTGGAAGTCCAGGTGGTAACACT
** * *
50924 CTCTTCAATGGAAGAAGGCTCAGAAGTCTCAGGAAGA
258 CTC-TC-ATGGAAGAAGGCTTGGAAGACTCAGGGAGA
* * * * *
50961 GTCGAGGTCGAGGTCGTCTCAGAGCCTTCAGAGTCGGTGGTGACATCAACAATACCAGAGCCAGT
1 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
* * * * **
51026 CGAAGTGCTACCTTCAGTGTCGGTAGTGGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGGCT
66 CGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGGCT
* *
51091 CAGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCGGAGCCCTCAGAGTCAGTCGTCACATCA
131 CAGAAGTCTCAGGGAGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCGGTCGTCACATCA
* *
51156 ACAATACCCGAGCCAACGGAAGTGCTACCCTCGGTGTCGGTGGAAGTCCAGGTGGTAACACT-TC
196 ACAATACCAGAGCCAACGGAAGTGCTACCTTCGGTGTCGGTGGAAGTCCAGGTGGTAACACTCTC
* *
51220 -CATCG--GAA-CCGTTGGAAGACTCAGGGAGA
261 TCATGGAAGAAGGC-TTGGAAGACTCAGGGAGA
* * * * * * * *
51249 GTTGAAGTTGAGGTCGTCTCAGAGCCTTCAGAATCAGTCGTCACATCAACAATACCCGAGCCAAT
1 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
* * *
51314 GGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAAGTAGTGACACTCTCTTCAATGGAAGAAGGCT
66 CGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGGCT
* * *
51379 CCGAAGTCTCAGGAAGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCAGTCGTCACATCA
131 CAGAAGTCTCAGGGAGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCGGTCGTCACATCA
* *
51444 ACAATACCCGAGCCAACGGAAGTGCTACCCTCGGTGTCGGTGGAAGTCCAGGTGGTAACACTCTC
196 ACAATACCAGAGCCAACGGAAGTGCTACCTTCGGTGTCGGTGGAAGTCCAGGTGGTAACACTCTC
* * **
51509 -AACGG-A-ACCG-TTGGAAGACTCAGGGAGA
261 TCATGGAAGAAGGCTTGGAAGACTCAGGGAGA
* * * *
51537 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCAGTCGTCACATCAACGATACCCGAACCA-A
1 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
* * * *
51601 CAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCTCTTCAATGGAAGAAGGC
66 C-GAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGGC
* * * * *
51666 TCAGAAGTCTCAGGAAGAGTCGAGGTCGAGGTCGTCTCAGAGCCTTCAGAGTCGGTGGTGACATC
130 TCAGAAGTCTCAGGGAGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCGGTCGTCACATC
* * * ** * *
51731 AACAATACCAGAGCCAGTC-GAAGTGCTACCTTCAGTGTCGGTAGTGGTCCAGGTAGTGACACTC
195 AACAATACCAGAGCCA-ACGGAAGTGCTACCTTCGGTGTCGGTGGAAGTCCAGGTGGTAACACTC
** *
51795 TCTTCAATGGAAGAAGGCTCAGAAGTCTCAGGGAGA
259 TC-TC-ATGGAAGAAGGCTTGGAAGACTCAGGGAGA
* * *
51831 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTGGTGACATCAACAATACCAGAACCA-A
1 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
* * * * * * * * **** * *
51895 CGGAACTGCTACCTTCGGTGTCGGTGGTAGTCCAAGTAGTGACACTTTCGTCCGCAGAGGAAATG
66 C-GAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCGTCAATGGAAG-AAGG
** * * * * *
51960 -TTGGAAGACTC-GGGAAGAGTCGAGGTGGAGGTCGTCTCAGAACCCTCAGAGTCGGTCGTCACG
129 CTCAGAAGTCTCAGGG-AGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCGGTCGTCACA
* * *
52023 TCAACAATACCAGAACCAACGGAAGTGCTACCTTCGGTGTCAGTGGAAGTCCAAGTGGTAACACT
193 TCAACAATACCAGAGCCAACGGAAGTGCTACCTTCGGTGTCGGTGGAAGTCCAGGTGGTAACACT
* *
52088 -TC-CATCG--GAA-CCGTTGGAAGACTCAGGGAGA
258 CTCTCATGGAAGAAGGC-TTGGAAGACTCAGGGAGA
* * *
52119 GTTGAAGTCGTA-GTCGTCTCAGAACCCTCAGAGTCGGTCGTCACATCAACAATACCCGAACCAG
1 GTCGAAGTCG-AGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAG
* * * ** *
52183 TCGAAGTACTACCCTCTGAGTCAGTTGAAGTCCAGGTAGTGACACTCTCGTCAGCGGATG-AGGA
65 TCGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGG-
* * * * * * *
52247 CTCCGAAGTCTC-GGGAAGAGTCGAAGTCGAGGTCGTCTCGGAACCTTCAGAGTCGGTGGTGACG
129 CTCAGAAGTCTCAGGG-AGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCGGTCGTCACA
* * * * * * *
52311 TCTACAATACCAGAACCAGTC-GAAGTGCTACCTTCAGTATCGGTGGTAGTCCAAGTGGTAACAC
193 TCAACAATACCAGAGCCA-ACGGAAGTGCTACCTTCGGTGTCGGTGGAAGTCCAGGTGGTAACAC
* * * * *
52375 TCTCGTC-CGCAGAGGAATTG-TCGGAAGACTCAGGAAGA
257 TCTC-TCATG--GAAGAA-GGCTTGGAAGACTCAGGGAGA
*
52413 GTCGAAGTCGAGGTCGTCTCAGAACCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
1 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
* * * *
52478 CGAAGTACTACCCTCTGAGTCAGTTGAAGTCCAGGTAGTGACACTCTCTTCAATGGAAGAAGGCT
66 CGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGGCT
* * *
52543 CAGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCGGAACCCTCAGAGTCAGTCGTCACATCA
131 CAGAAGTCTCAGGGAGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCGGTCGTCACATCA
* * * *
52608 ACAATACCAGAACCAACGGAAGTGCTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTGACACTCTC
196 ACAATACCAGAGCCAACGGAAGTGCTACCTTCGGTGTCGGTGGAAGTCCAGGTGGTAACACTCTC
* *
52673 GTC-T-GAAGAAGAGTCGTTTGAAGACTCAGGTAGA
261 -TCATGGAAGAAG-G-C-TTGGAAGACTCAGGGAGA
* * * * * * * * * *
52707 GTTGAAGTCGTGGTGGTCTCAGAACCCTCGGAGTCAGTTGTCACATCAACGATACCCGAGCCAGT
1 GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
* * * * ** * *
52772 GGACGTACTACCTTCAGTGTCGGTGGTGGTCCAAGTGGTGACACT
66 CGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACT
52817 TTCAATAGTT
Statistics
Matches: 1583, Mismatches: 232, Indels: 82
0.83 0.12 0.04
Matches are distributed among these distances:
286 2 0.00
287 2 0.00
288 731 0.46
289 11 0.01
290 6 0.00
291 12 0.01
292 2 0.00
293 14 0.01
294 793 0.50
295 10 0.01
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.21
Consensus pattern (292 bp):
GTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCAACAATACCAGAACCAGT
CGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGGCT
CAGAAGTCTCAGGGAGAGTCGAGGTCGAGGTCGTCTCGGAGCCCTCAGAGTCGGTCGTCACATCA
ACAATACCAGAGCCAACGGAAGTGCTACCTTCGGTGTCGGTGGAAGTCCAGGTGGTAACACTCTC
TCATGGAAGAAGGCTTGGAAGACTCAGGGAGA
Left flanking sequence: Indices 50167 -- 50666
CAACAATGCCACTACCAGTCAGGAGCTGACCGTCGGTACCGGTGGTGGTCCAAGTGGTGACGATC
GTGCTATCAGAACTCTTCAAAGACTGGTCGGAACCAGTTGTCGTGGGTTCAACAGTATTTTCGAC
ACCACTCTCCAGCACAGTGGCGGCAGTATCAGGGAAAGTCGACGTCGATGTCGACGCTAAACCGG
CCGAGTCAGTTGTGACTGCTACAAGACCAGAGTGGATTAAGGTTTTACCCTGTGCATCGACTGTA
GTCCACGTTGTAAGGATCGCTACAGGTGGCATTGAAGTTGGCAGCGTAGTGGTGACGCTCCCATC
CGGGATGGTGGACGTTGAAGTCACCAACGACCCGTCTGAGTCAGTGGTGACATCAACAATGCCAG
ACCCCGTTGAGAGGTTACCGTCAGTGTCAGTAGTGGTCCAAGAATGCACCTCAGAGTTTGTGGAA
GCATTGATACCACCCTCTACACCGTCACCGGAGGACTCAGGAATG
Right flanking sequence: Indices 52817 -- 53316
TTCAATAGTTGAGCCATCGCTGCTAGTTTGCAGAGTAACACCACCCCCAATGGCATCAGGTATCA
ATGATGTCGATGTAACCAACGAGCCTGCGTTGTCGGTTGTTACCCGAACAACACCTGCCACAGTG
GTGAGGGAGCCATCCTCGGCGGTACTGGTCCACTCAGACGTGAACTCTGTACATTCAGGACAGCC
AGGGTTGGAAGGACGTGCGATAACGGATGTCATTGTGGTCAACCGTTTCTCAGAATCCGTGGTGA
CAATAACTACTCCTGAATCAGTGGCAACGTTCCCGTTGTCATCAGTCACAGTCCAAGTCTGCGTG
AATTGCGAACATTCGGAGCAGCCAGGATCCGACGGGCGTGCAATGACTGACGTCACGGTCACCAA
ATTCTTCTCCGCATCAGTGGTTACAATGACCAACCCGGAATCAGTTGCCACTTCACCTCTTTCAT
CAGTCACCGTCCAGGTTTGAGTGTATTCGGTACATTCAGCACAAG
Found at i:51483 original size:435 final size:435
Alignment explanation
Indices: 50650--52816 Score: 2407
Period size: 435 Copynumber: 5.0 Consensus size: 435
50640 ACACCGTCAC
* * * * * *
50650 CGGAGGACTCAGGAATG-GTCGAAGTCGAGGTTGTCTCGGAGCCTTCAGAGTCGGTCGTCACGTC
1 CGGAAGACTCAGGGA-GAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATC
* * *
50714 AACAATACCAGAACCAACAGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAGGTAGTGACACTCT
65 AACAATACCAGAACCAACAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCT
* ** * * *
50779 CC-TCGGTGGACGAAGGCTCCAAAGTCTCAGGAAGAGTCGAGGTCGAGGACGTCTCAGAGCCTTC
130 CCATC---GGA--AACG-TCGGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCTTC
* * *
50843 AGAGTCGGTCGTCACATCAACAATACCAGAGCCAGTCGAAGTGCTACCTTTAGTGTCAGTGGTAG
189 AGAGTCGGTCGTCACATCAACAATACCAGAGCCAGTCGAAGTGCTACCCTCAGTGTCAGTGGAAG
* *
50908 TCCAGGTGGTGACACTCTCTTCAATGGAAGAAGGCTCAGAAGTCTCAGGAAGAGTCGAGGTCGAG
254 TCCAGGTAGTGACACTCTCTTCAATGGAAGAAGGCTCAGAAGTCTCAGGAAGAGTCGAAGTCGAG
* *
50973 GTCGTCTCAGAGCCTTCAGAGTCGGTGGTGACATCAACAATACCAGAGCCAGTC-GAAGTGCTAC
319 GTCGTCTCAGAGCCCTCAGAGTCGGTGGTGACATCAACAATACCAGAGCCA-ACGGAAGTGCTAC
* * * * ** *
51037 CTTCAGTGTCGGTAGTGGTCCAGGTAGTGACACTCTCGTCAATGGAAGAAGGCT
383 CTTCAGTGTCGGTGGTAGTCCAAGTGGTGACACTCTCGTCAACAGAAGAATG-T
* * * *
51091 CAGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCGGAGCCCTCAGAGTCAGTCGTCACATCA
1 CGGAAGACTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCA
* * * * *
51156 ACAATACCCGAGCCAACGGAAGTGCTACCCTCGGTGTCGGTGGAAGTCCAGGTGGTAACACT-TC
66 ACAATACCAGAACCAACAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCTC
* * * * * * *
51220 CATCGGAACCGTTGGAAGACTCAGGGAGAGTTGAAGTTGAGGTCGTCTCAGAGCCTTCAGAATCA
131 CATCGGAAACGTCGGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCTTCAGAGTCG
* * * * *
51285 GTCGTCACATCAACAATACCCGAGCCAATGGAAGTACTACCCTCAGTGTCAGTGGAAGTCCAAGT
196 GTCGTCACATCAACAATACCAGAGCCAGTCGAAGTGCTACCCTCAGTGTCAGTGGAAGTCCAGGT
* *
51350 AGTGACACTCTCTTCAATGGAAGAAGGCTCCGAAGTCTCAGGAAGAGTCGAGGTCGAGGTCGTCT
261 AGTGACACTCTCTTCAATGGAAGAAGGCTCAGAAGTCTCAGGAAGAGTCGAAGTCGAGGTCGTCT
* * * * * * *
51415 CGGAGCCCTCAGAGTCAGTCGTCACATCAACAATACCCGAGCCAACGGAAGTGCTACCCTCGGTG
326 CAGAGCCCTCAGAGTCGGTGGTGACATCAACAATACCAGAGCCAACGGAAGTGCTACCTTCAGTG
* * * *
51480 TCGGTGGAAGTCCAGGTGGT-A-ACACTC-TCAAC-G--GAACCGT
391 TCGGTGGTAGTCCAAGTGGTGACACTCTCGTCAACAGAAGAA-TGT
* *
51520 TGGAAGACTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCAGTCGTCACATCA
1 CGGAAGACTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCA
* *
51585 ACGATACCCGAACCAACAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCTC
66 ACAATACCAGAACCAACAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCTC
* * * *
51650 TTCAAT-GGAAGAAGGCTCAGAAGTCTCAGGAAGAGTCGAGGTCGAGGTCGTCTCAGAGCCTTCA
131 --C-ATCGG-A-AACG-TCGGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCTTCA
* * * * * **
51714 GAGTCGGTGGTGACATCAACAATACCAGAGCCAGTCGAAGTGCTACCTTCAGTGTCGGTAGTGGT
190 GAGTCGGTCGTCACATCAACAATACCAGAGCCAGTCGAAGTGCTACCCTCAGTGTCAGTGGAAGT
*
51779 CCAGGTAGTGACACTCTCTTCAATGGAAGAAGGCTCAGAAGTCTCAGGGAGAGTCGAAGTCGAGG
255 CCAGGTAGTGACACTCTCTTCAATGGAAGAAGGCTCAGAAGTCTCAGGAAGAGTCGAAGTCGAGG
* *
51844 TCGTCTCAGAGCCCTCAGAGTCGGTGGTGACATCAACAATACCAGAACCAACGGAACTGCTACCT
320 TCGTCTCAGAGCCCTCAGAGTCGGTGGTGACATCAACAATACCAGAGCCAACGGAAGTGCTACCT
* * * ** *
51909 TCGGTGTCGGTGGTAGTCCAAGTAGTGACACTTTCGTCCGCAGAGGAAATGT
385 TCAGTGTCGGTGGTAGTCCAAGTGGTGACACTCTCGTCAACAGAAG-AATGT
* * * * *
51961 TGGAAGACTC-GGGAAGAGTCGAGGTGGAGGTCGTCTCAGAACCCTCAGAGTCGGTCGTCACGTC
1 CGGAAGACTCAGGG-AGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATC
* * * *
52025 AACAATACCAGAACCAACGGAAGTGCTACCTTCGGTGTCAGTGGAAGTCCAAGTGGTAACACT-T
65 AACAATACCAGAACCAACAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCT
* * * * * *
52089 CCATCGGAACCGTTGGAAGACTCAGGGAGAGTTGAAGTCGTA-GTCGTCTCAGAACCCTCAGAGT
130 CCATCGGAAACGTCGGAAGTCTCAGGGAGAGTCGAAGTCG-AGGTCGTCTCAGAGCCTTCAGAGT
* * * * * *
52153 CGGTCGTCACATCAACAATACCCGAACCAGTCGAAGTACTACCCTCTGAGTCAGTTGAAGTCCAG
194 CGGTCGTCACATCAACAATACCAGAGCCAGTCGAAGTGCTACCCTCAGTGTCAGTGGAAGTCCAG
* ** * * *
52218 GTAGTGACACTCTCGTCAGCGGATG-AGGACTCCGAAGTCTCGGGAAGAGTCGAAGTCGAGGTCG
259 GTAGTGACACTCTCTTCAATGGAAGAAGG-CTCAGAAGTCTCAGGAAGAGTCGAAGTCGAGGTCG
* * * * * * *
52282 TCTCGGAACCTTCAGAGTCGGTGGTGACGTCTACAATACCAGAACCAGTC-GAAGTGCTACCTTC
323 TCTCAGAGCCCTCAGAGTCGGTGGTGACATCAACAATACCAGAGCCA-ACGGAAGTGCTACCTTC
* * ** *
52346 AGTATCGGTGGTAGTCCAAGTGGTAACACTCTCGTCCGCAGAGGAATTGT
387 AGTGTCGGTGGTAGTCCAAGTGGTGACACTCTCGTCAACAGAAGAA-TGT
* *
52396 CGGAAGACTCAGGAAGAGTCGAAGTCGAGGTCGTCTCAGAACCCTCAGAGTCGGTCGTCACATCA
1 CGGAAGACTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCA
* * * * * *
52461 ACAATACCAGAACCAGTC-GAAGTACTACCCTCTGAGTCAGTTGAAGTCCAGGTAGTGACACTCT
66 ACAATACCAGAACCA-ACAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCT
* * * * *
52525 CTTCAAT-GGAAGAAGGCTCAGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCGGAACCCTC
130 C--C-ATCGG-A-AACG-TCGGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCTTC
* * * *
52589 AGAGTCAGTCGTCACATCAACAATACCAGAACCA-ACGGAAGTGCTACCCTCGGTGTCAGTGGAA
189 AGAGTCGGTCGTCACATCAACAATACCAGAGCCAGTC-GAAGTGCTACCCTCAGTGTCAGTGGAA
* * ** * * *
52653 GTCCAGGTGGTGACACTCTCGTC--T-GAAGAAGAGTCGTTTGAAGACTCAGGTAGAGTTGAAGT
253 GTCCAGGTAGTGACACTCTCTTCAATGGAAGAAG-G-C-TCAGAAGTCTCAGGAAGAGTCGAAGT
* * * * * * * * * ** * *
52715 CGTGGTGGTCTCAGAACCCTCGGAGTCAGTTGTCACATCAACGATACCCGAGCCAGTGGACGTAC
315 CGAGGTCGTCTCAGAGCCCTCAGAGTCGGTGGTGACATCAACAATACCAGAGCCAACGGAAGTGC
*
52780 TACCTTCAGTGTCGGTGGTGGTCCAAGTGGTGACACT
380 TACCTTCAGTGTCGGTGGTAGTCCAAGTGGTGACACT
52817 TTCAATAGTT
Statistics
Matches: 1471, Mismatches: 216, Indels: 78
0.83 0.12 0.04
Matches are distributed among these distances:
429 122 0.08
430 3 0.00
431 1 0.00
432 7 0.00
433 8 0.01
434 9 0.01
435 820 0.56
436 12 0.01
437 7 0.00
438 15 0.01
439 6 0.00
440 15 0.01
441 444 0.30
442 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (435 bp):
CGGAAGACTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCCTCAGAGTCGGTCGTCACATCA
ACAATACCAGAACCAACAGAAGTACTACCCTCGGTGTCAGTGGAAGTCCAGGTGGTAACACTCTC
CATCGGAAACGTCGGAAGTCTCAGGGAGAGTCGAAGTCGAGGTCGTCTCAGAGCCTTCAGAGTCG
GTCGTCACATCAACAATACCAGAGCCAGTCGAAGTGCTACCCTCAGTGTCAGTGGAAGTCCAGGT
AGTGACACTCTCTTCAATGGAAGAAGGCTCAGAAGTCTCAGGAAGAGTCGAAGTCGAGGTCGTCT
CAGAGCCCTCAGAGTCGGTGGTGACATCAACAATACCAGAGCCAACGGAAGTGCTACCTTCAGTG
TCGGTGGTAGTCCAAGTGGTGACACTCTCGTCAACAGAAGAATGT
Left flanking sequence: Indices 50150 -- 50649
AGTGTCGGTGGTCACATCAACAATGCCACTACCAGTCAGGAGCTGACCGTCGGTACCGGTGGTGG
TCCAAGTGGTGACGATCGTGCTATCAGAACTCTTCAAAGACTGGTCGGAACCAGTTGTCGTGGGT
TCAACAGTATTTTCGACACCACTCTCCAGCACAGTGGCGGCAGTATCAGGGAAAGTCGACGTCGA
TGTCGACGCTAAACCGGCCGAGTCAGTTGTGACTGCTACAAGACCAGAGTGGATTAAGGTTTTAC
CCTGTGCATCGACTGTAGTCCACGTTGTAAGGATCGCTACAGGTGGCATTGAAGTTGGCAGCGTA
GTGGTGACGCTCCCATCCGGGATGGTGGACGTTGAAGTCACCAACGACCCGTCTGAGTCAGTGGT
GACATCAACAATGCCAGACCCCGTTGAGAGGTTACCGTCAGTGTCAGTAGTGGTCCAAGAATGCA
CCTCAGAGTTTGTGGAAGCATTGATACCACCCTCTACACCGTCAC
Right flanking sequence: Indices 52817 -- 53316
TTCAATAGTTGAGCCATCGCTGCTAGTTTGCAGAGTAACACCACCCCCAATGGCATCAGGTATCA
ATGATGTCGATGTAACCAACGAGCCTGCGTTGTCGGTTGTTACCCGAACAACACCTGCCACAGTG
GTGAGGGAGCCATCCTCGGCGGTACTGGTCCACTCAGACGTGAACTCTGTACATTCAGGACAGCC
AGGGTTGGAAGGACGTGCGATAACGGATGTCATTGTGGTCAACCGTTTCTCAGAATCCGTGGTGA
CAATAACTACTCCTGAATCAGTGGCAACGTTCCCGTTGTCATCAGTCACAGTCCAAGTCTGCGTG
AATTGCGAACATTCGGAGCAGCCAGGATCCGACGGGCGTGCAATGACTGACGTCACGGTCACCAA
ATTCTTCTCCGCATCAGTGGTTACAATGACCAACCCGGAATCAGTTGCCACTTCACCTCTTTCAT
CAGTCACCGTCCAGGTTTGAGTGTATTCGGTACATTCAGCACAAG
Found at i:54396 original size:459 final size:459
Alignment explanation
Indices: 53771--55609 Score: 3291
Period size: 459 Copynumber: 4.0 Consensus size: 459
53761 AACACTGAGG
53771 GCATCCACTATCAGAAGGCCGGGGAACGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
1 GCATCCACTATCAGAAGGCCGGGGAACGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
*
53836 TGGACACTACAACAACGCCCGAGTCCGTGGCCACGCTACCGCTGGTATCAGTGGAAGTCCACGTC
66 TGGACACTACAACAACGCCCGAGTCCGTGGCCACGCTACCGCTGGTATCAGTGGAAGTCCAAGTC
* *
53901 AGGGTGAATTCGGTACAATCAGAACAAACGGAGGCAGATGAACGGGGGAGAGCAGAGCTCATTGT
131 AGGGTGAATTCGGTACAATCAGAACAAACAGAGGCAGATGAACGGGGAAGAGCAGAGCTCATTGT
53966 TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTTCCGT
196 TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTTCCGT
*
54031 CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAGCCAGAACAACTGGGGTCAGAAGAT
261 CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAGCCAGAACAACTGGGGTCAGACGAT
* *
54096 TGGGCAATTGTCGAGGTCACAGTCGTCAACTGTTTGTCCGAACCAGTTGTAACCAAGATGACTCC
326 TGGGCAATTGTCGAGGTCACAGTCGTCAACTGTTTGTCAGACCCAGTTGTAACCAAGATGACTCC
* *
54161 CGAGTTTGCAGCCACAACGCCGTTGGCGTCGGTTGTTGACCACGTCAGGGTATACTCAGTGCACC
391 CGAGTTTGCAGCCACAACGCCGTTAGCATCGGTTGTTGACCACGTCAGGGTATACTCAGTGCACC
54226 CTGA
456 CTGA
54230 GCATCCACTATCAGAAGGCCGGGGAACGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
1 GCATCCACTATCAGAAGGCCGGGGAACGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
* * *
54295 TGGACACTACAACAACGTCCGAGTCCGTGGCCACGCTACCACTGGTATCAGTGGAAGTCCAGGTC
66 TGGACACTACAACAACGCCCGAGTCCGTGGCCACGCTACCGCTGGTATCAGTGGAAGTCCAAGTC
54360 AGGGTGAATTCGGTACAATCAGAACAAACAGAGGCAGATGAACGGGGAAGAGCAGAGCTCATTGT
131 AGGGTGAATTCGGTACAATCAGAACAAACAGAGGCAGATGAACGGGGAAGAGCAGAGCTCATTGT
54425 TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTTCCGT
196 TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTTCCGT
* * *
54490 CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAGCCAGAGCAACCGGGGTCGGACGAT
261 CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAGCCAGAACAACTGGGGTCAGACGAT
*
54555 TGGGCAATTGTCGAGGTCACAGTTGTCAACTGTTTGTCAGACCCAGTTGTAACCAAGATGACTCC
326 TGGGCAATTGTCGAGGTCACAGTCGTCAACTGTTTGTCAGACCCAGTTGTAACCAAGATGACTCC
* *
54620 CGAGTTTGCAGCCACGACGCCGTTAGCATCGGTTATTGACCACGTCAGGGTATACTCAGTGCACC
391 CGAGTTTGCAGCCACAACGCCGTTAGCATCGGTTGTTGACCACGTCAGGGTATACTCAGTGCACC
54685 CTGA
456 CTGA
54689 GCATCCACTATCAGAAGGCCGGGGAACGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
1 GCATCCACTATCAGAAGGCCGGGGAACGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
54754 TGGACACTACAACAACGCCCGAGTCCGTGGCCACGCTACCGCTGGTATCAGTGGAAGTCCAAGTC
66 TGGACACTACAACAACGCCCGAGTCCGTGGCCACGCTACCGCTGGTATCAGTGGAAGTCCAAGTC
* * *
54819 AGGGTGAATTCGGTACAATCAGAACAAACAGAGGCAGATGAACGAGGAAGAGCGGTGCTCATTGT
131 AGGGTGAATTCGGTACAATCAGAACAAACAGAGGCAGATGAACGGGGAAGAGCAGAGCTCATTGT
54884 TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTTCCGT
196 TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTTCCGT
* *
54949 CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAGTCAGAACAACTGGGGTCGGACGAT
261 CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAGCCAGAACAACTGGGGTCAGACGAT
55014 TGGGCAATTGTCGAGGTCACAGTCGTCAACTGTTTGTCAGACCCAGTTGTAACCAAGATGACTCC
326 TGGGCAATTGTCGAGGTCACAGTCGTCAACTGTTTGTCAGACCCAGTTGTAACCAAGATGACTCC
*
55079 CGAGTTTGCAGCCACAACGCCGTTAGCATCGGTGGTTGACCACGTCAGGGTATACTCAGTGCACC
391 CGAGTTTGCAGCCACAACGCCGTTAGCATCGGTTGTTGACCACGTCAGGGTATACTCAGTGCACC
55144 CTGA
456 CTGA
* *
55148 GCATCCACTATCAGAAGGCCGAGGAGCGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
1 GCATCCACTATCAGAAGGCCGGGGAACGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
* * *
55213 TGGACACTACAACAACGCCCGAGTCCGTGGCCACGCCACCGTTGGTATCAGTGGACGTCCAAGTC
66 TGGACACTACAACAACGCCCGAGTCCGTGGCCACGCTACCGCTGGTATCAGTGGAAGTCCAAGTC
* * * *
55278 AGGGTGAATTCGGTGCAATCAGAACAAACAGAGACAGATGAACGGGGGAGAGCAGAGGTCATTGT
131 AGGGTGAATTCGGTACAATCAGAACAAACAGAGGCAGATGAACGGGGAAGAGCAGAGCTCATTGT
*
55343 TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTACCGT
196 TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTTCCGT
* *
55408 CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAACCAGAACAACTGGGATCAGACGAT
261 CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAGCCAGAACAACTGGGGTCAGACGAT
* * * *
55473 TGGGCAATTGTCGAGGTCACAGTTGTCAATTGTTTGTCCGAGCCAGTTGTAACCAAGATGACTCC
326 TGGGCAATTGTCGAGGTCACAGTCGTCAACTGTTTGTCAGACCCAGTTGTAACCAAGATGACTCC
* * * *
55538 AGAGTTTGCAGCCACAACGCCGTTAGCGTCGGTTGTCGACCACGTCAGGGTATACTCGGTGCACC
391 CGAGTTTGCAGCCACAACGCCGTTAGCATCGGTTGTTGACCACGTCAGGGTATACTCAGTGCACC
55603 CTGA
456 CTGA
55607 GCA
1 GCA
55610 GCCAACATCG
Statistics
Matches: 1325, Mismatches: 55, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
459 1325 1.00
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (459 bp):
GCATCCACTATCAGAAGGCCGGGGAACGAGAGAAGTCAGAGTGTACAACGACCCGTTAGAGTCAG
TGGACACTACAACAACGCCCGAGTCCGTGGCCACGCTACCGCTGGTATCAGTGGAAGTCCAAGTC
AGGGTGAATTCGGTACAATCAGAACAAACAGAGGCAGATGAACGGGGAAGAGCAGAGCTCATTGT
TGTCAACAGCCTGTCCGAGTTGGTTGTGACAATCACTACTGCAGAATCAGTAACGGTGCTTCCGT
CGTCGTTGGTGGACGTCCAAACCAGAGTATACTCGGTGCAGCCAGAACAACTGGGGTCAGACGAT
TGGGCAATTGTCGAGGTCACAGTCGTCAACTGTTTGTCAGACCCAGTTGTAACCAAGATGACTCC
CGAGTTTGCAGCCACAACGCCGTTAGCATCGGTTGTTGACCACGTCAGGGTATACTCAGTGCACC
CTGA
Left flanking sequence: Indices 53271 -- 53770
TCAGTCACCGTCCAGGTTTGAGTGTATTCGGTACATTCAGCACAAGCGGGGCCGGACGGACGGGG
GATTATGGAAGTCATAGTCACCACGTTTTTCTCAAAGTCGGTGGTGACGTAGACTACGCCTGAAT
CAGTCGCGACGTTGCCTTTATCATCGGTGAAGGACCATGTTTGAGTATACTGTGTGCATTCAGGA
CACCCAGGATCCGAGGGACGAGCAATGACAGAGGTCATGGTAACCAAACTTCCAACCGAATCAGT
CGTAACCATCACTACCCCAGAATCCGTGGCAACAGCTCCTGTGTCGTCCGTCACGGTCCATGTTT
GAGTGAACTCAGTACACCCACTGCAATCGGTGTTTGAGGTTCTTGGTATAACAGAGGTCATGGTC
GTCAACAGTTTGTTTGCATCAGTTGTTACGACCACCAAACCAGAGTCCGTAGCAACAACACCTTG
ATCATCCGTGATCTGCCAAGTCTGGGTGTATTCAGAACACTGAGG
Right flanking sequence: Indices 55610 -- 56109
GCCAACATCGGAAGGACGCTCAATAATAGACGTTGCAGTTGTCAACTTTCCATCAGTGTCGGTGG
TCACAACCACCACCCCCGAATCAGTTACCGCAACACCATTACCGTCCGTAAACGACCAAGTTTGG
GTAAACTCAGTACACCCAGAACAACCCAAATTGGAAGGGCGAGCGATAACTGACGTCGCAGTCGT
CAATTGTTTGGCTGAATCTGTGGTGACCAAAACAACACCCGAGTCTGTCGCCACGTTGCCATCTT
GGTCCGTAAAGGACCAAGTCTGAGTGTATTCGGTACACTCGGGGCATTCAGGATCAGGAGGCGCA
AACCCTGAGGTCATTGTGGTTAGCTTTTTATCAGCGTCTGTTGTGACAACCACGACACCTGAGCT
AGTGCCAACCTGACCTTGGCTATCAGTGGTAGTCCACGTTTGCGTGTACTCCGTACAGTCTGGGC
AACCAGGATCGGAAGGACGAGGGAGAACAGAGGTCACAGTGGTCC
Found at i:59251 original size:36 final size:36
Alignment explanation
Indices: 59211--59317 Score: 99
Period size: 36 Copynumber: 3.0 Consensus size: 36
59201 CAGCGTATTG
** *
59211 GCCGAACTCGACAGGGTTGAAGACGACAGAGTGGTT
1 GCCGAACTCGACAGACTGGAAGACGACAGAGTGGTT
* * *
59247 GCCGAAGTCGACAGACTGGAGGACGACAGCGTGGTT
1 GCCGAACTCGACAGACTGGAAGACGACAGAGTGGTT
* * * * *
59283 GCGGAAGTC-ACCAGGCTGGAAGAAGACAGCGTGGT
1 GCCGAACTCGA-CAGACTGGAAGACGACAGAGTGGT
59318 AGTGGACAGG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
35 1 0.02
36 59 0.98
ACGTcount: A:0.27, C:0.21, G:0.38, T:0.14
Consensus pattern (36 bp):
GCCGAACTCGACAGACTGGAAGACGACAGAGTGGTT
Left flanking sequence: Indices 58711 -- 59210
TCTGGTCACTATCGGTGGTGACAAGCACAACTCCGGAATCAGTGGCCACAGCTCCGTTTTCATCG
GTGACAGACCAAGTCTTGGTGTACTCAGTGCAGTCAGAGCACGTGGAGGGCGAGGGTCGAGGCAG
CGTCCCAGTGGAGGTGGTCAACTTCCCCTCCGAGTCGGTAGTCACGACCACCTCACCTGACTCCG
TCACCGTAGCCCCCTTGTTGTCGGTCGTAGACCAAGTGGTGGAATACTTAGTACAACCAACACAG
CCAGCGGAAGTTGGCCGAGGGTATACACTGGTAGAGGTGACGAGTTTATTGTCCGTGTTAGTCGT
GACGAACACCACACCCGAGTCTGTGACACTTTTGCCCTGATCATCAGTGGTGGTCCACTGAGTGG
TCATGGTAGTACAGCCATCGCAACTGGTGACTGTGGACAGAGTCGAAGCCACCGTGCTGGAAGTT
GACAGTGTAGTAGCAGAAGACAGGGTAGAGGACGGCAGCGTATTG
Right flanking sequence: Indices 59318 -- 59817
AGTGGACAGGGTGTAAGCCGACAGAGACGATGACGAGGCTGACTTTGGATGCTCGATAGGCCACT
TGGGAAGCTGAGCACAGCTTGGCTTCCAAGCAGCAGCTGCGGGAACAGGACCGTTATAAATAATT
CCGTTTCTTGAACCGATGTCAAGACCTTGGAACATACGATTCGTAATTTTGAAAAGGCTCTTATC
GTACCCAGGGCCAATGTCCCAAATAAGAGTGTCACCGCCATAGTCCGCCACCGTGAGCTTTTGAC
CATCGTACTTGAAACTTTGGCAACCCACAATACAAACAAGCGTCATACCCTTTCCGAAACCACGA
ATGATTTCATTTCTACCAGTCCAAACTACACCGGTCGAATCAGTCGCAAACTGGAGGACCGTCAG
GTCGGGGGTCGAGCGGAACCTGTTTGTCTGACGCTCCAACATGGAATTGCCTACGATGTGCAAAC
ACCCCGTACCGGCGATACCGTTGGCTAACACAAGGGAGTCCACGA
Done.