Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold17
Parameters: 2 7 7 80 10 50 500
Length:  100474

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2723--2811
21
4.2
21
94
0
133
11
31
30
26
1.91
2810--2920
30
3.7
30
82
2
125
16
44
25
14
1.85
2993--3072
21
3.8
21
77
0
88
13
43
25
17
1.86
15042--15095
16
3.4
16
82
12
67
22
7
42
27
1.80
27106--27151
22
2.1
22
87
0
65
28
21
17
32
1.96
27100--27170
33
2.2
33
82
5
81
30
25
18
25
1.98
27120--27165
22
2.1
22
83
0
56
30
19
23
26
1.98
27119--27183
33
2.0
33
84
0
85
29
27
20
23
1.98
29024--29059
10
3.6
10
92
0
54
30
58
0
11
1.33
29019--29083
17
3.6
18
75
18
64
26
60
4
9
1.47
29016--29051
10
3.6
10
92
0
54
30
58
2
8
1.42
31771--31838
15
4.5
15
78
7
66
55
1
42
0
1.08
31786--31875
9
10.0
9
77
4
74
52
8
37
1
1.40
31771--31854
18
4.8
18
85
4
102
54
3
41
0
1.17
31786--31877
27
3.4
27
80
12
82
52
8
38
1
1.40
31796--31893
36
2.7
36
82
0
97
48
14
34
2
1.55
31837--31881
12
3.5
12
77
16
54
46
17
33
2
1.61
33845--33877
9
3.7
9
100
0
66
36
18
0
45
1.49
34106--34139
6
5.7
6
96
0
59
55
32
11
0
1.36
34117--34216
14
7.0
15
78
12
70
51
44
3
2
1.28
34132--34211
6
13.0
6
74
17
58
50
46
1
2
1.23
34152--34216
8
8.9
8
71
19
61
49
46
1
3
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34129--34216
14
6.2
14
78
6
97
51
45
1
2
1.21
34133--34219
42
2.0
43
89
6
133
51
43
1
3
1.26
34129--34216
22
4.1
22
76
12
78
51
45
1
2
1.21
44075--44173
31
3.2
31
84
5
130
43
22
14
20
1.87
46125--46189
33
2.0
33
82
11
80
26
4
58
10
1.51
46140--46184
17
2.8
16
83
6
54
22
4
64
8
1.40
46606--46644
7
5.6
7
100
0
78
0
28
43
28
1.55
48693--48732
21
1.9
21
84
0
53
35
20
37
7
1.81
54107--54157
13
4.1
13
82
7
61
13
5
49
31
1.66
56710--56740
12
2.6
12
100
0
62
16
12
29
41
1.85
61857--61882
12
2.2
12
100
0
52
30
38
23
7
1.83
62561--62600
21
1.9
21
89
0
62
22
20
35
22
1.96
64196--64225
11
2.7
11
94
0
51
26
6
56
10
1.57
65747--65776
12
2.5
12
100
0
60
23
16
33
26
1.96
71299--71359
27
2.3
27
88
0
95
18
67
3
11
1.35
71302--71341
9
4.4
9
87
0
62
20
65
2
12
1.38
71299--71372
27
2.7
27
85
4
87
18
63
4
13
1.45
76514--76567
21
2.5
22
79
8
67
5
37
31
25
1.79
76488--76573
21
4.1
21
70
5
57
6
34
34
23
1.82
81519--81559
21
2.0
21
100
0
82
14
34
24
26
1.94
81522--81581
21
2.9
21
87
5
77
18
35
25
21
1.96
82335--82385
21
2.4
21
84
12
61
5
47
25
21
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82345--82398
21
2.6
21
84
0
72
3
42
25
27
1.72
84840--84879
13
3.0
13
88
3
53
30
40
20
10
1.85
85295--85383
36
2.5
36
90
0
133
33
10
40
15
1.81
87247--87284
12
3.2
12
85
3
51
5
2
68
23
1.23
87253--87283
16
1.9
16
93
0
53
3
3
67
25
1.20
88036--88066
9
3.4
9
90
0
53
12
29
19
38
1.89
88028--88100
18
3.9
18
80
10
85
13
30
19
36
1.90
88783--88850
23
2.9
23
84
6
75
16
11
47
25
1.80
89168--89197
12
2.5
12
94
0
51
36
26
36
0
1.57
90472--90512
18
2.3
18
95
0
73
36
26
31
4
1.78
91674--93169
432
3.5
431
86
1
1963
22
22
27
27
1.99
91674--93169
144
10.4
144
85
0
1675
22
22
27
27
1.99
96815--96870
12
4.7
12
75
16
53
3
41
26
28
1.72
98489--98537
12
4.1
12
97
0
89
24
34
16
24
1.95
98613--98744
9
14.3
9
78
13
126
13
62
1
21
1.38
98619--98744
39
3.4
39
80
12
183
14
62
1
21
1.39
98613--98760
21
7.9
19
76
13
123
14
62
1
21
1.38
98602--98760
30
5.4
27
76
17
117
14
62
1
21
1.38
98700--98775
33
2.4
33
86
6
104
14
63
1
21
1.38
98602--98775
72
2.4
72
97
2
321
13
63
1
21
1.37
99754--99828
15
5.0
15
90
0
114
8
20
38
33
1.81
99771--99835
30
2.2
30
88
0
94
9
24
35
30
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100434--100474
7
5.9
7
100
0
82
0
14
73
12
1.11

Tables:   1

The End!