Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold17
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 100474
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Found at i:2747 original size:21 final size:21
Alignment explanation
Indices: 2723--2811 Score: 133
Period size: 21 Copynumber: 4.2 Consensus size: 21
2713 GCCACCGTTG
2723 CCACCGTAGTTGTCGTTGCGA
1 CCACCGTAGTTGTCGTTGCGA
2744 CCACCGTAGTTGTCGTTGCGA
1 CCACCGTAGTTGTCGTTGCGA
* *
2765 CCGCCGTAGTTGTCGTTGCGG
1 CCACCGTAGTTGTCGTTGCGA
* * *
2786 CCGCCGTAGTTGTCGTTACGG
1 CCACCGTAGTTGTCGTTGCGA
2807 CCACC
1 CCACC
2812 ACCAAAGCCA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 64 1.00
ACGTcount: A:0.11, C:0.31, G:0.30, T:0.27
Consensus pattern (21 bp):
CCACCGTAGTTGTCGTTGCGA
Left flanking sequence: Indices 2223 -- 2722
AGAGTTCCCCGGAGGGGCCGCCTCTAGCACAGCATTTGCGGTTAGAATCTTTTCTCAGCATTGCT
GGAAAATGGGCTTTGCTGGGTCAGGGAGACATGGCACGGTGAGACGAGACTGGCAAACGCGCTGA
TATAGGTGCTGTGTGCAGGTTGTGAAGCAGTAACCATAATCAATGCCACAGAGCTACCCCAAACG
GCAGGGTTAATCGGTCAGAATAAATAGGGCTACTGTTTACGGCACCCACTTCCTCCGTGTTCGCA
ATTGGTGCTCAATTGGCCCATCTCACAGAAACCCAACCCCGTTGACCTCCCACTTGAGACGCGTC
TACACGAGAAAACCCCTCATTAAATCCCTCATATCCACCACCCGTCGAACCTACTAACCCTATTC
ACTTACTGTCCATTGATACTTACCATCTGCCGCCGTCGTTTCTGCGGTCATCGCGACCGCCACCG
TAGCCAAAGTCCTCACGGGTGTAGCCACCGTTGCCGCCACCGTTG
Right flanking sequence: Indices 2812 -- 3311
ACCAAAGCCACCCTGACCGCCGTGGTTGCCACCGAAACCACCCTGGCCGCCGTGGTTGCCGCCGT
AGCCGCCTTGGCCGCCGTGGTTACCACCGTAACCACCCTGACCGTGGCCCTCGTTACCACCGCCG
AGAACGGAGCCAATCATCAGGCCCAAGCCACCGCCCTGCGAGCCCTGGTTGTGGTTGCCGCCATA
GCCACCCTGGTTGCCACCGTAGCCACCCTGGCCACCGCCATAGCCGCCCTGGTTGCCACCGTAGC
CCTGGTTGTGGTCCTTGCCACCGCCGAGCACCGAGCTGAGCATACCGCCAAGACCGCCCTCAGAC
TGCTGGTGGTTCTGGTTGTAGTTCTGTTGGTGGTTCTGGTTGCCGCCGCCCATCACGGACGAGAG
CATACCGCCAAGGCCGCCCTGCTGCTGCTGCTGCTTGCCACCGTGCAACTGGTTCAGGATCATCG
ACCCCACAAGCCCGCCCGCAGACATCCCGTGGGACTTGCCCGTGG
Found at i:2853 original size:30 final size:30
Alignment explanation
Indices: 2810--2920 Score: 125
Period size: 30 Copynumber: 3.7 Consensus size: 30
2800 GTTACGGCCA
2810 CCACC-AAAGCCACCCTGACCGCCGTGGTTG
1 CCACCGAAA-CCACCCTGACCGCCGTGGTTG
*
2840 CCACCGAAACCACCCTGGCCGCCGTGGTTG
1 CCACCGAAACCACCCTGACCGCCGTGGTTG
* * * * * * *
2870 CCGCCGTAGCCGCCTTGGCCGCCGTGGTTA
1 CCACCGAAACCACCCTGACCGCCGTGGTTG
*
2900 CCACCGTAACCACCCTGACCG
1 CCACCGAAACCACCCTGACCG
2921 TGGCCCTCGT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
30 65 0.96
31 3 0.04
ACGTcount: A:0.16, C:0.44, G:0.25, T:0.14
Consensus pattern (30 bp):
CCACCGAAACCACCCTGACCGCCGTGGTTG
Left flanking sequence: Indices 2310 -- 2809
AGGGAGACATGGCACGGTGAGACGAGACTGGCAAACGCGCTGATATAGGTGCTGTGTGCAGGTTG
TGAAGCAGTAACCATAATCAATGCCACAGAGCTACCCCAAACGGCAGGGTTAATCGGTCAGAATA
AATAGGGCTACTGTTTACGGCACCCACTTCCTCCGTGTTCGCAATTGGTGCTCAATTGGCCCATC
TCACAGAAACCCAACCCCGTTGACCTCCCACTTGAGACGCGTCTACACGAGAAAACCCCTCATTA
AATCCCTCATATCCACCACCCGTCGAACCTACTAACCCTATTCACTTACTGTCCATTGATACTTA
CCATCTGCCGCCGTCGTTTCTGCGGTCATCGCGACCGCCACCGTAGCCAAAGTCCTCACGGGTGT
AGCCACCGTTGCCGCCACCGTTGCCACCGTAGTTGTCGTTGCGACCACCGTAGTTGTCGTTGCGA
CCGCCGTAGTTGTCGTTGCGGCCGCCGTAGTTGTCGTTACGGCCA
Right flanking sequence: Indices 2921 -- 3420
TGGCCCTCGTTACCACCGCCGAGAACGGAGCCAATCATCAGGCCCAAGCCACCGCCCTGCGAGCC
CTGGTTGTGGTTGCCGCCATAGCCACCCTGGTTGCCACCGTAGCCACCCTGGCCACCGCCATAGC
CGCCCTGGTTGCCACCGTAGCCCTGGTTGTGGTCCTTGCCACCGCCGAGCACCGAGCTGAGCATA
CCGCCAAGACCGCCCTCAGACTGCTGGTGGTTCTGGTTGTAGTTCTGTTGGTGGTTCTGGTTGCC
GCCGCCCATCACGGACGAGAGCATACCGCCAAGGCCGCCCTGCTGCTGCTGCTGCTTGCCACCGT
GCAACTGGTTCAGGATCATCGACCCCACAAGCCCGCCCGCAGACATCCCGTGGGACTTGCCCGTG
GCACCGCCAATGACGTCACCGATGAAGCCACGCTCACCCTCCTGGGCGTCGGGACCACCCTGGCC
CTGTTGGTTGGATTGCTGAGGCTTGTACTCGCCCTGTTCGCCCTG
Found at i:3017 original size:21 final size:21
Alignment explanation
Indices: 2993--3072 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
2983 GCCCTGGTTG
*
2993 TGGTTGCCGCCATAGCCACCC
1 TGGTTGCCACCATAGCCACCC
*
3014 TGGTTGCCACCGTAGCCACCC
1 TGGTTGCCACCATAGCCACCC
*** * *
3035 TGGCCACCGCCATAGCCGCCC
1 TGGTTGCCACCATAGCCACCC
*
3056 TGGTTGCCACCGTAGCC
1 TGGTTGCCACCATAGCC
3073 CTGGTTGTGG
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.14, C:0.44, G:0.25, T:0.17
Consensus pattern (21 bp):
TGGTTGCCACCATAGCCACCC
Left flanking sequence: Indices 2493 -- 2992
AATTGGCCCATCTCACAGAAACCCAACCCCGTTGACCTCCCACTTGAGACGCGTCTACACGAGAA
AACCCCTCATTAAATCCCTCATATCCACCACCCGTCGAACCTACTAACCCTATTCACTTACTGTC
CATTGATACTTACCATCTGCCGCCGTCGTTTCTGCGGTCATCGCGACCGCCACCGTAGCCAAAGT
CCTCACGGGTGTAGCCACCGTTGCCGCCACCGTTGCCACCGTAGTTGTCGTTGCGACCACCGTAG
TTGTCGTTGCGACCGCCGTAGTTGTCGTTGCGGCCGCCGTAGTTGTCGTTACGGCCACCACCAAA
GCCACCCTGACCGCCGTGGTTGCCACCGAAACCACCCTGGCCGCCGTGGTTGCCGCCGTAGCCGC
CTTGGCCGCCGTGGTTACCACCGTAACCACCCTGACCGTGGCCCTCGTTACCACCGCCGAGAACG
GAGCCAATCATCAGGCCCAAGCCACCGCCCTGCGAGCCCTGGTTG
Right flanking sequence: Indices 3073 -- 3572
CTGGTTGTGGTCCTTGCCACCGCCGAGCACCGAGCTGAGCATACCGCCAAGACCGCCCTCAGACT
GCTGGTGGTTCTGGTTGTAGTTCTGTTGGTGGTTCTGGTTGCCGCCGCCCATCACGGACGAGAGC
ATACCGCCAAGGCCGCCCTGCTGCTGCTGCTGCTTGCCACCGTGCAACTGGTTCAGGATCATCGA
CCCCACAAGCCCGCCCGCAGACATCCCGTGGGACTTGCCCGTGGCACCGCCAATGACGTCACCGA
TGAAGCCACGCTCACCCTCCTGGGCGTCGGGACCACCCTGGCCCTGTTGGTTGGATTGCTGAGGC
TTGTACTCGCCCTGTTCGCCCTGAGAGTAGAATTCGTTGGCAGACATGTTGTTGAATTCGCTAGC
GTTATCGGTGGAATATATGCGGCGGTACCTGAAATTTGTGCAGACACGACCTTCGATACAGGGGC
ATGGAAGGCAAGTACGAGGCCGACAGGAGAGGCGGTAGTCTAGAA
Found at i:15075 original size:15 final size:16
Alignment explanation
Indices: 15042--15095 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
15032 GATAGAGGGG
*
15042 TGGTGGCTAAAGAGGC
1 TGGTGGTTAAAGAGGC
15058 TGGTGGTTAAAG-GGC
1 TGGTGGTTAAAGAGGC
*
15073 TGGT-GTATAAAGAGTC
1 TGGTGGT-TAAAGAGGC
15089 TGGTGGT
1 TGGTGGT
15096 AGGTCGGTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
14 2 0.06
15 12 0.36
16 17 0.52
17 2 0.06
ACGTcount: A:0.22, C:0.07, G:0.43, T:0.28
Consensus pattern (16 bp):
TGGTGGTTAAAGAGGC
Left flanking sequence: Indices 14542 -- 15041
GCTCTCGTTCAACTTGTCGTACCTCAAGCTTCTGGCGACCCTCCAGTACCTTCTTCGAGGGTTGC
CGTTTTTGGCCACCAACATCGACCTGACGTTCCCCGCCCACGGCAAATTGTTGATGGGGGCGGGG
CTGATCATCGAGCTGGTGGCGTATGCGGCGGGCCGCCAGCCCGACGCCATTTGCGGGAAGCCCAA
CCAGGCGATGTTGGACGCCATCAAAGCGGAAAACCCCCCGTTGAAGGCTGCCCCGAAGCGCGGGC
TCATGGTCGGGGACCGGTTGAACACCGACATGAAATTCGGTCGCGATGGCGGGCTCGACACGTTG
TTGGTGTTGACGGGGATCGAGACTGAGGACACTGTGCACGGGTTGGCGCCGGCGGAGCAGCCGAC
GTACTACGCGTCGAAGCTTGGCGACTTGTTTGAGTTGACGCACTAGACGACTGGTTCGAACATAG
ATGATAGACTAATACAGCTAGAGTAATGGTAGTGTGATAGAGGGG
Right flanking sequence: Indices 15096 -- 15595
AGGTCGGTGACCAGAAGGTGACTCCAGTTGTAGTTTAACTAGTGGTCTGTAAGATTATTAGTTTC
AGATGATTGCAATGATCCTTTCCTGAGCAGTTTTCCAGGTCACCTATCGCTCGGGATTGGCTGTA
TTGTTGCCACCCCTTTACTAGCTGGTCACACACACCGCACCCTTCCTCCCACACATTGTCCACCC
ACCTACCCCACACGCATTGTTTAGCGAGCCCAGCATGGTCTCAGCGACCCACAGCAGGCTGCATT
GACGAGACTACCGAAACAATGCGTCTGTTTCGGCAACCGGCATCCCGCGGGTGTCCGGCAGCGTC
ACGGGCCGTGACCTCAGCCTACAGTGCCTGTTTCAAGTTCGTCTGAACGGGCTCGCGACCGGCGT
TTGTGGCTGCAACTCCGACCTAAATATAGATCGTGGGCGTCGGCACCAGTTGCCGTGGACGCGGT
TCCAGATGTCGCTGACAGCCTTGTGGGTGGGCCCATCGCGTGTGT
Found at i:27131 original size:22 final size:22
Alignment explanation
Indices: 27106--27151 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
27096 ACGATACACG
27106 TTGAATACACTTCCAGTGCACA
1 TTGAATACACTTCCAGTGCACA
* **
27128 TTGAGTACACTTTGAGTGCACA
1 TTGAATACACTTCCAGTGCACA
27150 TT
1 TT
27152 CAGTGCACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (22 bp):
TTGAATACACTTCCAGTGCACA
Left flanking sequence: Indices 26606 -- 27105
CGCGCGCACGCCATGTTAAGCACCGACTGAAAAAGACGCTCAGTCAACCTACCAGTGCAATGAGT
TCCCCTAATCCCTGGGCTAAGAGAGACGCGTGGCGCTACGAATCGTTCCCTCGTGCTGCCCGTTT
CCGCAACGCGTTCCCGGGCTTCGGCATCGCCGTGGTGGCGTTCACCTTGTTCTGTGGCTACGAGA
AGTTCGTGTTGCAGAAGGACGCCCACCACGAGGAGCACCACTGAGCATCCGACCGACGGTCCGGC
CAGCTGGGGCGTCCACTGTACATTACTAGTCATCAATAAACAAACGAAAATGAGAGGTGTAGGAG
TATTGGGACTGCCTTGAAGAGCAGTTAGACTGAACCTGGGACCATAACCAGATGGGGCGACTGTC
AGGACACCAGTGCTCATCCATTGCACATTGGGCATCAAGTACACTTCAAGTGCACTCCAGCCTTA
TGGGTGTACATCCCCAGTGCAATTTGAATGCACAAACGATACACG
Right flanking sequence: Indices 27152 -- 27651
CAGTGCACAATGAGCACACTCCCAGTGCACATCGAGTACACATACGTTGCACATTCACTACACTA
GTAGACACGTTGGGTTTACAGTCGGTACACATTCTAACACTCAATACACTTTGACCACACAAGCG
GTATTTCACACCCAGTGTAGATTCAACCACCCAGTATACGTCCAGTAAACAGTACTCATTACCTT
TTGGTACACTCAGTAACCAGAACACCTAGCACCGTTCAATACACTCAGCATCCTAGTACCACTTT
CCCCCTACCACCCCCGCTACACCCACTACCCTTCGTAGATTCTATTATGCTATGTACAGTTACTC
CGGCTTCTCCATCTCGCCCAGCTGCCACGCAGGGGTCTCGTCCGCAGTGTCCACCTTCTCCGTCT
CCTGGCTCTTGTTGGCGTTCATCACCTTGGTCTTGTCGGACGCCACCTGCGCCCACAAGTCGATG
TACGCCTGCTCCTCGTGCAAACCCCACTGGGTGTTCAGGATGGGG
Found at i:27137 original size:33 final size:33
Alignment explanation
Indices: 27100--27170 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
27090 GCACAAACGA
*
27100 TACACGTTGAATACAC-TTCCAGTGCACATTGAG
1 TACACGTTGAATACACATT-CAGTGCACAATGAG
* * *
27133 TACACTTTGAGTGCACATTCAGTGCACAATGAG
1 TACACGTTGAATACACATTCAGTGCACAATGAG
*
27166 CACAC
1 TACAC
27171 TCCCAGTGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (33 bp):
TACACGTTGAATACACATTCAGTGCACAATGAG
Left flanking sequence: Indices 26600 -- 27099
CCAATCCGCGCGCACGCCATGTTAAGCACCGACTGAAAAAGACGCTCAGTCAACCTACCAGTGCA
ATGAGTTCCCCTAATCCCTGGGCTAAGAGAGACGCGTGGCGCTACGAATCGTTCCCTCGTGCTGC
CCGTTTCCGCAACGCGTTCCCGGGCTTCGGCATCGCCGTGGTGGCGTTCACCTTGTTCTGTGGCT
ACGAGAAGTTCGTGTTGCAGAAGGACGCCCACCACGAGGAGCACCACTGAGCATCCGACCGACGG
TCCGGCCAGCTGGGGCGTCCACTGTACATTACTAGTCATCAATAAACAAACGAAAATGAGAGGTG
TAGGAGTATTGGGACTGCCTTGAAGAGCAGTTAGACTGAACCTGGGACCATAACCAGATGGGGCG
ACTGTCAGGACACCAGTGCTCATCCATTGCACATTGGGCATCAAGTACACTTCAAGTGCACTCCA
GCCTTATGGGTGTACATCCCCAGTGCAATTTGAATGCACAAACGA
Right flanking sequence: Indices 27171 -- 27670
TCCCAGTGCACATCGAGTACACATACGTTGCACATTCACTACACTAGTAGACACGTTGGGTTTAC
AGTCGGTACACATTCTAACACTCAATACACTTTGACCACACAAGCGGTATTTCACACCCAGTGTA
GATTCAACCACCCAGTATACGTCCAGTAAACAGTACTCATTACCTTTTGGTACACTCAGTAACCA
GAACACCTAGCACCGTTCAATACACTCAGCATCCTAGTACCACTTTCCCCCTACCACCCCCGCTA
CACCCACTACCCTTCGTAGATTCTATTATGCTATGTACAGTTACTCCGGCTTCTCCATCTCGCCC
AGCTGCCACGCAGGGGTCTCGTCCGCAGTGTCCACCTTCTCCGTCTCCTGGCTCTTGTTGGCGTT
CATCACCTTGGTCTTGTCGGACGCCACCTGCGCCCACAAGTCGATGTACGCCTGCTCCTCGTGCA
AACCCCACTGGGTGTTCAGGATGGGGTACACCGCGCCGTACAACT
Found at i:27165 original size:22 final size:22
Alignment explanation
Indices: 27120--27165 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
27110 ATACACTTCC
* **
27120 AGTGCACATTGAGTACACTTTG
1 AGTGCACATTCAGTACACAATG
*
27142 AGTGCACATTCAGTGCACAATG
1 AGTGCACATTCAGTACACAATG
27164 AG
1 AG
27166 CACACTCCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (22 bp):
AGTGCACATTCAGTACACAATG
Left flanking sequence: Indices 26620 -- 27119
GTTAAGCACCGACTGAAAAAGACGCTCAGTCAACCTACCAGTGCAATGAGTTCCCCTAATCCCTG
GGCTAAGAGAGACGCGTGGCGCTACGAATCGTTCCCTCGTGCTGCCCGTTTCCGCAACGCGTTCC
CGGGCTTCGGCATCGCCGTGGTGGCGTTCACCTTGTTCTGTGGCTACGAGAAGTTCGTGTTGCAG
AAGGACGCCCACCACGAGGAGCACCACTGAGCATCCGACCGACGGTCCGGCCAGCTGGGGCGTCC
ACTGTACATTACTAGTCATCAATAAACAAACGAAAATGAGAGGTGTAGGAGTATTGGGACTGCCT
TGAAGAGCAGTTAGACTGAACCTGGGACCATAACCAGATGGGGCGACTGTCAGGACACCAGTGCT
CATCCATTGCACATTGGGCATCAAGTACACTTCAAGTGCACTCCAGCCTTATGGGTGTACATCCC
CAGTGCAATTTGAATGCACAAACGATACACGTTGAATACACTTCC
Right flanking sequence: Indices 27166 -- 27665
CACACTCCCAGTGCACATCGAGTACACATACGTTGCACATTCACTACACTAGTAGACACGTTGGG
TTTACAGTCGGTACACATTCTAACACTCAATACACTTTGACCACACAAGCGGTATTTCACACCCA
GTGTAGATTCAACCACCCAGTATACGTCCAGTAAACAGTACTCATTACCTTTTGGTACACTCAGT
AACCAGAACACCTAGCACCGTTCAATACACTCAGCATCCTAGTACCACTTTCCCCCTACCACCCC
CGCTACACCCACTACCCTTCGTAGATTCTATTATGCTATGTACAGTTACTCCGGCTTCTCCATCT
CGCCCAGCTGCCACGCAGGGGTCTCGTCCGCAGTGTCCACCTTCTCCGTCTCCTGGCTCTTGTTG
GCGTTCATCACCTTGGTCTTGTCGGACGCCACCTGCGCCCACAAGTCGATGTACGCCTGCTCCTC
GTGCAAACCCCACTGGGTGTTCAGGATGGGGTACACCGCGCCGTA
Found at i:27179 original size:33 final size:33
Alignment explanation
Indices: 27119--27183 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
27109 AATACACTTC
* * ***
27119 CAGTGCACATTGAGTACACTTTGAGTGCACATT
1 CAGTGCACAATGAGCACACTCCCAGTGCACATT
27152 CAGTGCACAATGAGCACACTCCCAGTGCACAT
1 CAGTGCACAATGAGCACACTCCCAGTGCACAT
27184 CGAGTACACA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (33 bp):
CAGTGCACAATGAGCACACTCCCAGTGCACATT
Left flanking sequence: Indices 26619 -- 27118
TGTTAAGCACCGACTGAAAAAGACGCTCAGTCAACCTACCAGTGCAATGAGTTCCCCTAATCCCT
GGGCTAAGAGAGACGCGTGGCGCTACGAATCGTTCCCTCGTGCTGCCCGTTTCCGCAACGCGTTC
CCGGGCTTCGGCATCGCCGTGGTGGCGTTCACCTTGTTCTGTGGCTACGAGAAGTTCGTGTTGCA
GAAGGACGCCCACCACGAGGAGCACCACTGAGCATCCGACCGACGGTCCGGCCAGCTGGGGCGTC
CACTGTACATTACTAGTCATCAATAAACAAACGAAAATGAGAGGTGTAGGAGTATTGGGACTGCC
TTGAAGAGCAGTTAGACTGAACCTGGGACCATAACCAGATGGGGCGACTGTCAGGACACCAGTGC
TCATCCATTGCACATTGGGCATCAAGTACACTTCAAGTGCACTCCAGCCTTATGGGTGTACATCC
CCAGTGCAATTTGAATGCACAAACGATACACGTTGAATACACTTC
Right flanking sequence: Indices 27184 -- 27683
CGAGTACACATACGTTGCACATTCACTACACTAGTAGACACGTTGGGTTTACAGTCGGTACACAT
TCTAACACTCAATACACTTTGACCACACAAGCGGTATTTCACACCCAGTGTAGATTCAACCACCC
AGTATACGTCCAGTAAACAGTACTCATTACCTTTTGGTACACTCAGTAACCAGAACACCTAGCAC
CGTTCAATACACTCAGCATCCTAGTACCACTTTCCCCCTACCACCCCCGCTACACCCACTACCCT
TCGTAGATTCTATTATGCTATGTACAGTTACTCCGGCTTCTCCATCTCGCCCAGCTGCCACGCAG
GGGTCTCGTCCGCAGTGTCCACCTTCTCCGTCTCCTGGCTCTTGTTGGCGTTCATCACCTTGGTC
TTGTCGGACGCCACCTGCGCCCACAAGTCGATGTACGCCTGCTCCTCGTGCAAACCCCACTGGGT
GTTCAGGATGGGGTACACCGCGCCGTACAACTGCAGCTCTTCACG
Found at i:29052 original size:10 final size:10
Alignment explanation
Indices: 29024--29059 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
29014 CACCACCACG
*
29024 ACCCACCACT
1 ACCCACCATT
29034 ACCCACCATT
1 ACCCACCATT
*
29044 ACCCACCATC
1 ACCCACCATT
29054 ACCCAC
1 ACCCAC
29060 GACCCACCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.31, C:0.58, G:0.00, T:0.11
Consensus pattern (10 bp):
ACCCACCATT
Left flanking sequence: Indices 28524 -- 29023
CCTAAGCCATGTTCCTCTTGGTGACTCTGTGTGTGCTAGTTGATGGTCCCTTGGGCTCTGACCAG
TTTGTCCTACATGCAGTCCACCAACATCGATCAGACGAGTCTAGTATAGCAAGAACAAACCAAAT
GCACCGACCTAAATGCACTGAAAATGGAAGCCCAGAGGTAAAAACCTCTTGAAAAAGTACATAAT
ATCCCTCTTCCTCTCTTACACCATTCTTCACCCATCACCTCTCTCCCTAGACCCACTCCTGTAGC
ACTACCACTCAGACGAGTCTAGTACCATACGAGCTCGACACTACGCCACACTACCACTCCAATGG
CATTGAAACCCACCTGACCCAAACATAACGCCACCACCCACCACCCACCACCGGCCTCTACACCC
ACACTCATCTCTACATAACACCCACCTTTCCAGCCCTGCCTTCGCGCACTTCCCTACACCTCCGC
AACCACCGCCAAACCCCACAAACCGCCACTAAAACCACCACCACG
Right flanking sequence: Indices 29060 -- 29559
GACCCACCACTCTCCCACGCCCACGCACCCACAATTCCGCGCAACCCGCCCGTCCACCCGTCCCC
CCCACCCTCCTGCACACACCCAGTGGCGACAATTTGTTTGCGAGCACCACGGCCACCAAACCAGA
AGACATGGCACTTGTGACGGCGGCGCCCTACCTCGTGTTGCTCTCGGAGAACGACCGCACGCTCA
AGGAGCACGCGCTCCGGCTGCTCAACCTGCTGGTGGACCAGCAGTGGCCCGAAATCGCCAACCTG
CTCCCGGAGCTCGAACAGTTGTGGGAGGACCCGCAGTTTCTGGAGCGGCAGTTGGCGGCTCTCGT
GATCTCGAAGTGCTACTACAACCTCGGCGACTACGCGGCGCTGGTCAAGTACGCGCTCTGCGCCG
GCGACGCCTTCGACGTCAACGAGCGCTCGCAGTACGTCGAGCACACGGTGCTGGAGTGTATCCGG
ATGTACAACCGCCACCGGGCCGCGGTGTACGAGAGCGAGAACGGG
Found at i:29064 original size:17 final size:18
Alignment explanation
Indices: 29019--29083 Score: 64
Period size: 17 Copynumber: 3.6 Consensus size: 18
29009 AAAACCACCA
29019 CCACGACCCACCACT-AC
1 CCACGACCCACCACTCAC
*
29036 CCACCATTACCCACCA-TCAC
1 CCA-C--GACCCACCACTCAC
*
29056 CCACGACCCACCACTCTC
1 CCACGACCCACCACTCAC
29074 CCACG-CCCAC
1 CCACGACCCAC
29084 GCACCCACAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
17 16 0.40
18 9 0.22
19 2 0.05
20 13 0.32
ACGTcount: A:0.26, C:0.60, G:0.05, T:0.09
Consensus pattern (18 bp):
CCACGACCCACCACTCAC
Left flanking sequence: Indices 28519 -- 29018
AGCAACCTAAGCCATGTTCCTCTTGGTGACTCTGTGTGTGCTAGTTGATGGTCCCTTGGGCTCTG
ACCAGTTTGTCCTACATGCAGTCCACCAACATCGATCAGACGAGTCTAGTATAGCAAGAACAAAC
CAAATGCACCGACCTAAATGCACTGAAAATGGAAGCCCAGAGGTAAAAACCTCTTGAAAAAGTAC
ATAATATCCCTCTTCCTCTCTTACACCATTCTTCACCCATCACCTCTCTCCCTAGACCCACTCCT
GTAGCACTACCACTCAGACGAGTCTAGTACCATACGAGCTCGACACTACGCCACACTACCACTCC
AATGGCATTGAAACCCACCTGACCCAAACATAACGCCACCACCCACCACCCACCACCGGCCTCTA
CACCCACACTCATCTCTACATAACACCCACCTTTCCAGCCCTGCCTTCGCGCACTTCCCTACACC
TCCGCAACCACCGCCAAACCCCACAAACCGCCACTAAAACCACCA
Right flanking sequence: Indices 29084 -- 29583
GCACCCACAATTCCGCGCAACCCGCCCGTCCACCCGTCCCCCCCACCCTCCTGCACACACCCAGT
GGCGACAATTTGTTTGCGAGCACCACGGCCACCAAACCAGAAGACATGGCACTTGTGACGGCGGC
GCCCTACCTCGTGTTGCTCTCGGAGAACGACCGCACGCTCAAGGAGCACGCGCTCCGGCTGCTCA
ACCTGCTGGTGGACCAGCAGTGGCCCGAAATCGCCAACCTGCTCCCGGAGCTCGAACAGTTGTGG
GAGGACCCGCAGTTTCTGGAGCGGCAGTTGGCGGCTCTCGTGATCTCGAAGTGCTACTACAACCT
CGGCGACTACGCGGCGCTGGTCAAGTACGCGCTCTGCGCCGGCGACGCCTTCGACGTCAACGAGC
GCTCGCAGTACGTCGAGCACACGGTGCTGGAGTGTATCCGGATGTACAACCGCCACCGGGCCGCG
GTGTACGAGAGCGAGAACGGGAACACTGAGAACAACACCGAGAAC
Found at i:29069 original size:10 final size:10
Alignment explanation
Indices: 29016--29051 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
29006 ACTAAAACCA
*
29016 CCACCACGAC
1 CCACCACTAC
29026 CCACCACTAC
1 CCACCACTAC
*
29036 CCACCATTAC
1 CCACCACTAC
29046 CCACCA
1 CCACCA
29052 TCACCCACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.31, C:0.58, G:0.03, T:0.08
Consensus pattern (10 bp):
CCACCACTAC
Left flanking sequence: Indices 28516 -- 29015
ACAAGCAACCTAAGCCATGTTCCTCTTGGTGACTCTGTGTGTGCTAGTTGATGGTCCCTTGGGCT
CTGACCAGTTTGTCCTACATGCAGTCCACCAACATCGATCAGACGAGTCTAGTATAGCAAGAACA
AACCAAATGCACCGACCTAAATGCACTGAAAATGGAAGCCCAGAGGTAAAAACCTCTTGAAAAAG
TACATAATATCCCTCTTCCTCTCTTACACCATTCTTCACCCATCACCTCTCTCCCTAGACCCACT
CCTGTAGCACTACCACTCAGACGAGTCTAGTACCATACGAGCTCGACACTACGCCACACTACCAC
TCCAATGGCATTGAAACCCACCTGACCCAAACATAACGCCACCACCCACCACCCACCACCGGCCT
CTACACCCACACTCATCTCTACATAACACCCACCTTTCCAGCCCTGCCTTCGCGCACTTCCCTAC
ACCTCCGCAACCACCGCCAAACCCCACAAACCGCCACTAAAACCA
Right flanking sequence: Indices 29052 -- 29551
TCACCCACGACCCACCACTCTCCCACGCCCACGCACCCACAATTCCGCGCAACCCGCCCGTCCAC
CCGTCCCCCCCACCCTCCTGCACACACCCAGTGGCGACAATTTGTTTGCGAGCACCACGGCCACC
AAACCAGAAGACATGGCACTTGTGACGGCGGCGCCCTACCTCGTGTTGCTCTCGGAGAACGACCG
CACGCTCAAGGAGCACGCGCTCCGGCTGCTCAACCTGCTGGTGGACCAGCAGTGGCCCGAAATCG
CCAACCTGCTCCCGGAGCTCGAACAGTTGTGGGAGGACCCGCAGTTTCTGGAGCGGCAGTTGGCG
GCTCTCGTGATCTCGAAGTGCTACTACAACCTCGGCGACTACGCGGCGCTGGTCAAGTACGCGCT
CTGCGCCGGCGACGCCTTCGACGTCAACGAGCGCTCGCAGTACGTCGAGCACACGGTGCTGGAGT
GTATCCGGATGTACAACCGCCACCGGGCCGCGGTGTACGAGAGCG
Found at i:31791 original size:15 final size:15
Alignment explanation
Indices: 31771--31838 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 15
31761 GGCGGCGGTC
31771 AAGAAGGAGGAAGAG
1 AAGAAGGAGGAAGAG
31786 AAGAAGGAGG-AGAAG
1 AAGAAGGAGGAAG-AG
* *
31801 GAGAAGAAGGAAGAG
1 AAGAAGGAGGAAGAG
* * * *
31816 AAGGAGAAGAAAGAC
1 AAGAAGGAGGAAGAG
31831 AAGAAGGA
1 AAGAAGGA
31839 CAAGAAGGAC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
14 2 0.05
15 39 0.91
16 2 0.05
ACGTcount: A:0.56, C:0.01, G:0.43, T:0.00
Consensus pattern (15 bp):
AAGAAGGAGGAAGAG
Left flanking sequence: Indices 31271 -- 31770
TCGTGCAGCAGACCGAGCACACGTACCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACC
GTGGGCAACAAGCACGAGGACGCGCTCGCCAAGTTTGGCGCCACGTTGGCCCAGGGGATCATCGA
TGCCGGCGGGCGCAACGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCG
CGCTTGTCGGGTTGGCGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTG
CTTGCGTTCACGCCCACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGC
GGCCGCGTGCCACGCGCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGG
AGAAGAAGGAGAAGGTGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAG
CGCCACGGGCTGAAGGTGGACGAGGGCGAGGCGGCGGCGGCGGTC
Right flanking sequence: Indices 31839 -- 32338
CAAGAAGGACGAGAAGTCCAAGGACGACAAGAAGGACGACAAGGCCGACAAGTCCGACAAGGAGC
AGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGCGGTGCCCAACATGCTGCGGGTGGTGCCG
TTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGAACCGGTTCACGCCGGTGCGCAAGTTGCG
TGCCACCGGTGGTGTGGTGGTGTTGCACGACGCGGAGCCCGACGCGCCCAAGGAGTGTATCAAGA
CGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCCGGAGCCGTTTACGTTGGAGGACGACGAC
GACGACGAATAGATATGAAGTAATAAATGATAGAGAAAGAGAGTAGGGATACGGTGGTGAATAGG
GTTAGATATGGTATGGGTGGTGGTACGGTAAGGGAGCAGTTAAGGTAGTGGTTTGTGTGGTGAAT
AGCGCCAGCCTCGGTACGACCAGGGGTATAGCCTGGTTTTTGAGC
Found at i:31801 original size:9 final size:9
Alignment explanation
Indices: 31786--31875 Score: 74
Period size: 9 Copynumber: 10.0 Consensus size: 9
31776 GGAGGAAGAG
*
31786 AAGAAGGAG
1 AAGAAGGAC
* *
31795 GAGAAGGAG
1 AAGAAGGAC
31804 AAGAAGGA-
1 AAGAAGGAC
*
31812 AGAGAAGGAG
1 A-AGAAGGAC
*
31822 AAGAAAGAC
1 AAGAAGGAC
31831 AAGAAGGAC
1 AAGAAGGAC
31840 AAGAAGGAC
1 AAGAAGGAC
* **
31849 GAGAAGTCC
1 AAGAAGGAC
* *
31858 AAGGACGAC
1 AAGAAGGAC
31867 AAGAAGGAC
1 AAGAAGGAC
31876 GACAAGGCCG
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
8 1 0.02
9 62 0.97
10 1 0.02
ACGTcount: A:0.52, C:0.09, G:0.38, T:0.01
Consensus pattern (9 bp):
AAGAAGGAC
Left flanking sequence: Indices 31286 -- 31785
AGCACACGTACCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACCGTGGGCAACAAGCAC
GAGGACGCGCTCGCCAAGTTTGGCGCCACGTTGGCCCAGGGGATCATCGATGCCGGCGGGCGCAA
CGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCGCGCTTGTCGGGTTGG
CGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTGCTTGCGTTCACGCCC
ACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGCGGCCGCGTGCCACGC
GCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGGAGAAGAAGGAGAAGG
TGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAGCGCCACGGGCTGAAG
GTGGACGAGGGCGAGGCGGCGGCGGCGGTCAAGAAGGAGGAAGAG
Right flanking sequence: Indices 31876 -- 32375
GACAAGGCCGACAAGTCCGACAAGGAGCAGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGC
GGTGCCCAACATGCTGCGGGTGGTGCCGTTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGA
ACCGGTTCACGCCGGTGCGCAAGTTGCGTGCCACCGGTGGTGTGGTGGTGTTGCACGACGCGGAG
CCCGACGCGCCCAAGGAGTGTATCAAGACGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCC
GGAGCCGTTTACGTTGGAGGACGACGACGACGACGAATAGATATGAAGTAATAAATGATAGAGAA
AGAGAGTAGGGATACGGTGGTGAATAGGGTTAGATATGGTATGGGTGGTGGTACGGTAAGGGAGC
AGTTAAGGTAGTGGTTTGTGTGGTGAATAGCGCCAGCCTCGGTACGACCAGGGGTATAGCCTGGT
TTTTGAGCACACCAGAGGCAACGAAAGGCGGCCGTTTGGTAGTAT
Found at i:31804 original size:18 final size:18
Alignment explanation
Indices: 31771--31854 Score: 102
Period size: 18 Copynumber: 4.8 Consensus size: 18
31761 GGCGGCGGTC
31771 AAGAAGGA-G-GAA-GAG
1 AAGAAGGACGAGAAGGAG
*
31786 AAGAAGGAGGAGAAGGAG
1 AAGAAGGACGAGAAGGAG
*
31804 AAGAAGGAAGAGAAGGAG
1 AAGAAGGACGAGAAGGAG
* * *
31822 AAGAAAGACAAGAAGGAC
1 AAGAAGGACGAGAAGGAG
31840 AAGAAGGACGAGAAG
1 AAGAAGGACGAGAAG
31855 TCCAAGGACG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
15 8 0.14
16 1 0.02
17 3 0.05
18 47 0.80
ACGTcount: A:0.55, C:0.04, G:0.42, T:0.00
Consensus pattern (18 bp):
AAGAAGGACGAGAAGGAG
Left flanking sequence: Indices 31271 -- 31770
TCGTGCAGCAGACCGAGCACACGTACCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACC
GTGGGCAACAAGCACGAGGACGCGCTCGCCAAGTTTGGCGCCACGTTGGCCCAGGGGATCATCGA
TGCCGGCGGGCGCAACGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCG
CGCTTGTCGGGTTGGCGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTG
CTTGCGTTCACGCCCACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGC
GGCCGCGTGCCACGCGCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGG
AGAAGAAGGAGAAGGTGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAG
CGCCACGGGCTGAAGGTGGACGAGGGCGAGGCGGCGGCGGCGGTC
Right flanking sequence: Indices 31855 -- 32354
TCCAAGGACGACAAGAAGGACGACAAGGCCGACAAGTCCGACAAGGAGCAGTTGGTGCTTCCCAA
GCACACCAAGGACGCGTACGCGGTGCCCAACATGCTGCGGGTGGTGCCGTTCCAGAGCGGGTACG
TGACGGCGGCCGCGGGCCAGAACCGGTTCACGCCGGTGCGCAAGTTGCGTGCCACCGGTGGTGTG
GTGGTGTTGCACGACGCGGAGCCCGACGCGCCCAAGGAGTGTATCAAGACGGTGCGCCAGTTGTA
CGTGACGGAGGCGCCGGTTCCGGAGCCGTTTACGTTGGAGGACGACGACGACGACGAATAGATAT
GAAGTAATAAATGATAGAGAAAGAGAGTAGGGATACGGTGGTGAATAGGGTTAGATATGGTATGG
GTGGTGGTACGGTAAGGGAGCAGTTAAGGTAGTGGTTTGTGTGGTGAATAGCGCCAGCCTCGGTA
CGACCAGGGGTATAGCCTGGTTTTTGAGCACACCAGAGGCAACGA
Found at i:31853 original size:27 final size:27
Alignment explanation
Indices: 31786--31877 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 27
31776 GGAGGAAGAG
* * *
31786 AAGAAGGAGGAGAAGGAGAAGAAGGA-
1 AAGAAGGACGAGAAAGACAAGAAGGAC
31812 AGAGAAGGA-GAAGAAAGACAAGAAGGAC
1 A-AGAAGGACG-AGAAAGACAAGAAGGAC
* * *
31840 AAGAAGGACGAG-AAGTCCAAGGACGAC
1 AAGAAGGACGAGAAAG-ACAAGAAGGAC
31867 AAGAAGGACGA
1 AAGAAGGACGA
31878 CAAGGCCGAC
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
26 5 0.09
27 49 0.88
28 2 0.04
ACGTcount: A:0.52, C:0.09, G:0.38, T:0.01
Consensus pattern (27 bp):
AAGAAGGACGAGAAAGACAAGAAGGAC
Left flanking sequence: Indices 31286 -- 31785
AGCACACGTACCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACCGTGGGCAACAAGCAC
GAGGACGCGCTCGCCAAGTTTGGCGCCACGTTGGCCCAGGGGATCATCGATGCCGGCGGGCGCAA
CGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCGCGCTTGTCGGGTTGG
CGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTGCTTGCGTTCACGCCC
ACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGCGGCCGCGTGCCACGC
GCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGGAGAAGAAGGAGAAGG
TGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAGCGCCACGGGCTGAAG
GTGGACGAGGGCGAGGCGGCGGCGGCGGTCAAGAAGGAGGAAGAG
Right flanking sequence: Indices 31878 -- 32377
CAAGGCCGACAAGTCCGACAAGGAGCAGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGCGG
TGCCCAACATGCTGCGGGTGGTGCCGTTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGAAC
CGGTTCACGCCGGTGCGCAAGTTGCGTGCCACCGGTGGTGTGGTGGTGTTGCACGACGCGGAGCC
CGACGCGCCCAAGGAGTGTATCAAGACGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCCGG
AGCCGTTTACGTTGGAGGACGACGACGACGACGAATAGATATGAAGTAATAAATGATAGAGAAAG
AGAGTAGGGATACGGTGGTGAATAGGGTTAGATATGGTATGGGTGGTGGTACGGTAAGGGAGCAG
TTAAGGTAGTGGTTTGTGTGGTGAATAGCGCCAGCCTCGGTACGACCAGGGGTATAGCCTGGTTT
TTGAGCACACCAGAGGCAACGAAAGGCGGCCGTTTGGTAGTATTA
Found at i:31868 original size:36 final size:36
Alignment explanation
Indices: 31796--31893 Score: 97
Period size: 36 Copynumber: 2.7 Consensus size: 36
31786 AAGAAGGAGG
* * ***
31796 AGAAGGAGAAGAAGGAAGAGAAGGAGAAGAAAGACA
1 AGAAGGACAAGAAGGACGAGAAGTCCAAGAAAGACA
* *
31832 AGAAGGACAAGAAGGACGAGAAGTCCAAGGACGACA
1 AGAAGGACAAGAAGGACGAGAAGTCCAAGAAAGACA
* * * *
31868 AGAAGGACGACAAGGCCGACAAGTCC
1 AGAAGGACAAGAAGGACGAGAAGTCC
31894 GACAAGGAGC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.49, C:0.14, G:0.35, T:0.02
Consensus pattern (36 bp):
AGAAGGACAAGAAGGACGAGAAGTCCAAGAAAGACA
Left flanking sequence: Indices 31296 -- 31795
CCCCGCGGTGGGCAAGTACACCAAGGCGTACGCGGACACCGTGGGCAACAAGCACGAGGACGCGC
TCGCCAAGTTTGGCGCCACGTTGGCCCAGGGGATCATCGATGCCGGCGGGCGCAACGCCACCATC
CAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCGCGCTTGTCGGGTTGGCGTTGTTCTG
CCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTGCTTGCGTTCACGCCCACGCTGGTGA
TTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGCGGCCGCGTGCCACGCGCGCGAGGGG
GTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGGAGAAGAAGGAGAAGGTGGCCACCGC
GGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAGCGCCACGGGCTGAAGGTGGACGAGG
GCGAGGCGGCGGCGGCGGTCAAGAAGGAGGAAGAGAAGAAGGAGG
Right flanking sequence: Indices 31894 -- 32393
GACAAGGAGCAGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGCGGTGCCCAACATGCTGCG
GGTGGTGCCGTTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGAACCGGTTCACGCCGGTGC
GCAAGTTGCGTGCCACCGGTGGTGTGGTGGTGTTGCACGACGCGGAGCCCGACGCGCCCAAGGAG
TGTATCAAGACGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCCGGAGCCGTTTACGTTGGA
GGACGACGACGACGACGAATAGATATGAAGTAATAAATGATAGAGAAAGAGAGTAGGGATACGGT
GGTGAATAGGGTTAGATATGGTATGGGTGGTGGTACGGTAAGGGAGCAGTTAAGGTAGTGGTTTG
TGTGGTGAATAGCGCCAGCCTCGGTACGACCAGGGGTATAGCCTGGTTTTTGAGCACACCAGAGG
CAACGAAAGGCGGCCGTTTGGTAGTATTACCAGTTTCATTGGTTA
Found at i:31875 original size:12 final size:12
Alignment explanation
Indices: 31837--31881 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
31827 AGACAAGAAG
31837 GACAAGAAGGAC
1 GACAAGAAGGAC
*
31849 GAGAAGTCCAAGGAC
1 GACAAG---AAGGAC
31864 GACAAGAAGGAC
1 GACAAGAAGGAC
31876 GACAAG
1 GACAAG
31882 GCCGACAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 17 0.61
15 11 0.39
ACGTcount: A:0.47, C:0.18, G:0.33, T:0.02
Consensus pattern (12 bp):
GACAAGAAGGAC
Left flanking sequence: Indices 31337 -- 31836
TGGGCAACAAGCACGAGGACGCGCTCGCCAAGTTTGGCGCCACGTTGGCCCAGGGGATCATCGAT
GCCGGCGGGCGCAACGCCACCATCCAGGTGGAGTCGCCGCACACCACCACGCTCAACGCGCGCGC
GCTTGTCGGGTTGGCGTTGTTCTGCCAGCTGTGGTACTGGTTCCCGTTGGCGCACTTCATGCTGC
TTGCGTTCACGCCCACGCTGGTGATTGGCGTCACCAGCGACCTCAAGGCGCCCAAGGCGTTTGCG
GCCGCGTGCCACGCGCGCGAGGGGGTGTTTGGGTATCCTGCCAAGGCCGAGGAGAGCAAGGAGGA
GAAGAAGGAGAAGGTGGCCACCGCGGTGTTGTCCACCACCGAGAAGCACAACCGGCGGATGAAGC
GCCACGGGCTGAAGGTGGACGAGGGCGAGGCGGCGGCGGCGGTCAAGAAGGAGGAAGAGAAGAAG
GAGGAGAAGGAGAAGAAGGAAGAGAAGGAGAAGAAAGACAAGAAG
Right flanking sequence: Indices 31882 -- 32381
GCCGACAAGTCCGACAAGGAGCAGTTGGTGCTTCCCAAGCACACCAAGGACGCGTACGCGGTGCC
CAACATGCTGCGGGTGGTGCCGTTCCAGAGCGGGTACGTGACGGCGGCCGCGGGCCAGAACCGGT
TCACGCCGGTGCGCAAGTTGCGTGCCACCGGTGGTGTGGTGGTGTTGCACGACGCGGAGCCCGAC
GCGCCCAAGGAGTGTATCAAGACGGTGCGCCAGTTGTACGTGACGGAGGCGCCGGTTCCGGAGCC
GTTTACGTTGGAGGACGACGACGACGACGAATAGATATGAAGTAATAAATGATAGAGAAAGAGAG
TAGGGATACGGTGGTGAATAGGGTTAGATATGGTATGGGTGGTGGTACGGTAAGGGAGCAGTTAA
GGTAGTGGTTTGTGTGGTGAATAGCGCCAGCCTCGGTACGACCAGGGGTATAGCCTGGTTTTTGA
GCACACCAGAGGCAACGAAAGGCGGCCGTTTGGTAGTATTACCAG
Found at i:33859 original size:9 final size:9
Alignment explanation
Indices: 33845--33877 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
33835 GGCGAACCTG
33845 TATATATCC
1 TATATATCC
33854 TATATATCC
1 TATATATCC
33863 TATATATCC
1 TATATATCC
33872 TATATA
1 TATATA
33878 CTACAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (9 bp):
TATATATCC
Left flanking sequence: Indices 33345 -- 33844
GACTACCTTATTACTTTGACTTAATTTTTCGTAACAAAATTCAGCCATCAATGTTAGCGTATCTA
TCCTATGGACTGAGATTTTTATTCTTTCACCGGCCCCCTCTAACAAAAGTTCCACCCCACTAAAC
GACGAGCCATACGACGGCAATTCAGAAATCACCTAAGACTTTACGAACATTACATAACATGTTAT
GTTAGTCACTTTACGAGCTTATATTGTGACCATGGTCACGTGATTAAATTATTTAAACCGGCCCC
CTCTAACAAATTTTAGTGTCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCAC
TATACGACGAGCTATACGACGACGGTTCAAAAATATTAGTAGAAGACTTTACGAGCATTACATAA
CGGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAAAAAACACATGTGATACTGATCACGTG
ACTTTACTATTGATACCGTAGATAGCGTTGATTCTGGCGAACCTG
Right flanking sequence: Indices 33878 -- 34377
CTACAATATAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCA
CCCAGTGCTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGG
AAAAAACGGCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCACTGACGCCACCAACAG
GGGGAAAAGGAGCCATTGGCATCCAACCCTTAAAACAGCAACAGCAACAGCAACAGCAACAACAA
CAACACCAACACCAACACCAACACACCAACACACCGATAACAACACACCAACACCAACACTCCAA
CACCAACACACCAATAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAA
AGGAAGCGAAGCCCAGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACC
GCCCATCCTGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCG
Found at i:34117 original size:6 final size:6
Alignment explanation
Indices: 34106--34139 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
34096 CAACCCTTAA
*
34106 AACAGC AACAGC AACAGC AACAGC AACAAC AACA
1 AACAGC AACAGC AACAGC AACAGC AACAGC AACA
34140 ACACCAACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.56, C:0.32, G:0.12, T:0.00
Consensus pattern (6 bp):
AACAGC
Left flanking sequence: Indices 33606 -- 34105
TCTAACAAATTTTAGTGTCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACT
ATACGACGAGCTATACGACGACGGTTCAAAAATATTAGTAGAAGACTTTACGAGCATTACATAAC
GGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAAAAAACACATGTGATACTGATCACGTGA
CTTTACTATTGATACCGTAGATAGCGTTGATTCTGGCGAACCTGTATATATCCTATATATCCTAT
ATATCCTATATACTACAATATAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTAC
TCCGAAGGCGCACCCAGTGCTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACA
ACCAACAGGGGGAAAAAACGGCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCACTGA
CGCCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAACCCTTAA
Right flanking sequence: Indices 34140 -- 34639
ACACCAACACCAACACCAACACACCAACACACCGATAACAACACACCAACACCAACACTCCAACA
CCAACACACCAATAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAG
GAAGCGAAGCCCAGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGC
CCATCCTGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAA
CTGCACATGTCAGGACTGTTCGAGGACCCGTAACTGGTAGGTGGCCAACCTACCAGTAACAAACC
CTGTCACCAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCA
GCCGAGAGACTCCATCAGAAGTATCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTA
ACGACAAGCTTTGATTTGCCTCCTTGGGGGGATTTTTTTCCCCCA
Found at i:34141 original size:15 final size:15
Alignment explanation
Indices: 34117--34216 Score: 70
Period size: 14 Copynumber: 7.0 Consensus size: 15
34107 ACAGCAACAG
* *
34117 CAACAGCAACAGCAA
1 CAACAACAACACCAA
34132 CAACAACAACACCAA
1 CAACAACAACACCAA
34147 C-AC--CAACACCAA
1 CAACAACAACACCAA
*
34159 CACACCAAC-ACACCGA
1 CA-A-CAACAACACCAA
*
34175 TAACAAC-ACACCAA
1 CAACAACAACACCAA
* *
34189 CACCAAC-ACTCCAA
1 CAACAACAACACCAA
*
34203 CACCAAC-ACACCAA
1 CAACAACAACACCAA
34217 TAAGAGGGGG
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
12 10 0.14
14 37 0.52
15 16 0.23
16 7 0.10
17 1 0.01
ACGTcount: A:0.51, C:0.44, G:0.03, T:0.02
Consensus pattern (15 bp):
CAACAACAACACCAA
Left flanking sequence: Indices 33617 -- 34116
TTAGTGTCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGC
TATACGACGACGGTTCAAAAATATTAGTAGAAGACTTTACGAGCATTACATAACGGCTTTACGAG
CTGACCTAATATACTGGTGCGGCTCAAAAAACACATGTGATACTGATCACGTGACTTTACTATTG
ATACCGTAGATAGCGTTGATTCTGGCGAACCTGTATATATCCTATATATCCTATATATCCTATAT
ACTACAATATAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGC
ACCCAGTGCTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGG
GAAAAAACGGCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCACTGACGCCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAAACAGCAACAG
Right flanking sequence: Indices 34217 -- 34716
TAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAACTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGACTC
CATCAGAAGTATCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCTGC
CTTCCGTAGTAACGGGGAGGAAGCCGGGCTTGCAGGGTGCAAGCG
Found at i:34161 original size:6 final size:6
Alignment explanation
Indices: 34132--34211 Score: 58
Period size: 6 Copynumber: 13.0 Consensus size: 6
34122 GCAACAGCAA
* * *
34132 CAACAA CAACAC CAACAC CAACAC CAACA- CACCAA C-ACAC CGATA-AC
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC C-A-ACAC
*
34179 AACACAC CAACAC CAACACTC CAACAC CAACAC
1 CA-ACAC CAACAC CAACA--C CAACAC CAACAC
34212 ACCAATAAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
5 7 0.12
6 41 0.68
7 5 0.08
8 7 0.12
ACGTcount: A:0.50, C:0.46, G:0.01, T:0.03
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 33632 -- 34131
TGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGACGGTT
CAAAAATATTAGTAGAAGACTTTACGAGCATTACATAACGGCTTTACGAGCTGACCTAATATACT
GGTGCGGCTCAAAAAACACATGTGATACTGATCACGTGACTTTACTATTGATACCGTAGATAGCG
TTGATTCTGGCGAACCTGTATATATCCTATATATCCTATATATCCTATATACTACAATATAAGCC
CTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTAACT
AAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAAAAAACGGCGCCA
ATGGCACCCGATCCAACGAATCGAATCGGATACCACTGACGCCACCAACAGGGGGAAAAGGAGCC
ATTGGCATCCAACCCTTAAAACAGCAACAGCAACAGCAACAGCAA
Right flanking sequence: Indices 34212 -- 34711
ACCAATAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAACTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCAC
CAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGA
GACTCCATCAGAAGTATCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTGATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTC
GCTGCCTTCCGTAGTAACGGGGAGGAAGCCGGGCTTGCAGGGTGC
Found at i:34165 original size:8 final size:8
Alignment explanation
Indices: 34152--34216 Score: 61
Period size: 8 Copynumber: 8.9 Consensus size: 8
34142 ACCAACACCA
34152 ACACCAAC
1 ACACCAAC
34160 ACACCAAC
1 ACACCAAC
* *
34168 ACACCGAT
1 ACACCAAC
34176 A-A-CAAC
1 ACACCAAC
34182 ACACC-A-
1 ACACCAAC
34188 ACACCAAC
1 ACACCAAC
*
34196 ACTCC-A-
1 ACACCAAC
34202 ACACCAAC
1 ACACCAAC
34210 ACACCAA
1 ACACCAA
34217 TAAGAGGGGG
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
6 12 0.27
7 6 0.13
8 27 0.60
ACGTcount: A:0.49, C:0.46, G:0.02, T:0.03
Consensus pattern (8 bp):
ACACCAAC
Left flanking sequence: Indices 33652 -- 34151
ACAAACAACCACCCCCACTATACGACGAGCTATACGACGACGGTTCAAAAATATTAGTAGAAGAC
TTTACGAGCATTACATAACGGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAAAAAACACA
TGTGATACTGATCACGTGACTTTACTATTGATACCGTAGATAGCGTTGATTCTGGCGAACCTGTA
TATATCCTATATATCCTATATATCCTATATACTACAATATAAGCCCTCAGTACGGCTTCAGGGTA
GCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTAACTAAACAATTATAGAAACCCGG
ATTGGATACCAATGGCACAACCAACAGGGGGAAAAAACGGCGCCAATGGCACCCGATCCAACGAA
TCGAATCGGATACCACTGACGCCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAA
ACAGCAACAGCAACAGCAACAGCAACAACAACAACACCAACACCA
Right flanking sequence: Indices 34217 -- 34716
TAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAACTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGACTC
CATCAGAAGTATCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCTGC
CTTCCGTAGTAACGGGGAGGAAGCCGGGCTTGCAGGGTGCAAGCG
Found at i:34165 original size:14 final size:14
Alignment explanation
Indices: 34129--34216 Score: 97
Period size: 14 Copynumber: 6.2 Consensus size: 14
34119 ACAGCAACAG
*
34129 CAACAACAACAACAC
1 CAACACCAAC-ACAC
34144 CAACACCAACAC-C
1 CAACACCAACACAC
*
34157 AACACACCAACACAC
1 CA-ACACCAACACAC
* * *
34172 CGATAACAACACAC
1 CAACACCAACACAC
*
34186 CAACACCAACACTC
1 CAACACCAACACAC
34200 CAACACCAACACAC
1 CAACACCAACACAC
34214 CAA
1 CAA
34217 TAAGAGGGGG
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
13 2 0.03
14 48 0.80
15 10 0.17
ACGTcount: A:0.51, C:0.45, G:0.01, T:0.02
Consensus pattern (14 bp):
CAACACCAACACAC
Left flanking sequence: Indices 33629 -- 34128
GCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGACG
GTTCAAAAATATTAGTAGAAGACTTTACGAGCATTACATAACGGCTTTACGAGCTGACCTAATAT
ACTGGTGCGGCTCAAAAAACACATGTGATACTGATCACGTGACTTTACTATTGATACCGTAGATA
GCGTTGATTCTGGCGAACCTGTATATATCCTATATATCCTATATATCCTATATACTACAATATAA
GCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTA
ACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAAAAAACGGCG
CCAATGGCACCCGATCCAACGAATCGAATCGGATACCACTGACGCCACCAACAGGGGGAAAAGGA
GCCATTGGCATCCAACCCTTAAAACAGCAACAGCAACAGCAACAG
Right flanking sequence: Indices 34217 -- 34716
TAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAACTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGACTC
CATCAGAAGTATCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCTGC
CTTCCGTAGTAACGGGGAGGAAGCCGGGCTTGCAGGGTGCAAGCG
Found at i:34191 original size:42 final size:43
Alignment explanation
Indices: 34133--34219 Score: 133
Period size: 42 Copynumber: 2.0 Consensus size: 43
34123 CAACAGCAAC
*
34133 AACAACAACACCAACACCAACAC-CAACACACCAACACACCGAT
1 AACAACAACACCAACACCAACACTCAA-ACACCAACACACCAAT
*
34176 AACAAC-ACACCAACACCAACACTCCAACACCAACACACCAAT
1 AACAACAACACCAACACCAACACTCAAACACCAACACACCAAT
34218 AA
1 AA
34220 GAGGGGGTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
42 33 0.80
43 8 0.20
ACGTcount: A:0.52, C:0.44, G:0.01, T:0.03
Consensus pattern (43 bp):
AACAACAACACCAACACCAACACTCAAACACCAACACACCAAT
Left flanking sequence: Indices 33633 -- 34132
GTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGACGGTTC
AAAAATATTAGTAGAAGACTTTACGAGCATTACATAACGGCTTTACGAGCTGACCTAATATACTG
GTGCGGCTCAAAAAACACATGTGATACTGATCACGTGACTTTACTATTGATACCGTAGATAGCGT
TGATTCTGGCGAACCTGTATATATCCTATATATCCTATATATCCTATATACTACAATATAAGCCC
TCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTAACTA
AACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAAAAAACGGCGCCAA
TGGCACCCGATCCAACGAATCGAATCGGATACCACTGACGCCACCAACAGGGGGAAAAGGAGCCA
TTGGCATCCAACCCTTAAAACAGCAACAGCAACAGCAACAGCAAC
Right flanking sequence: Indices 34220 -- 34719
GAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCCAGA
GGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGCTAG
ATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCAGGA
CTGTTCGAGGACCCGTAACTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGACCAA
CAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGACTCCAT
CAGAAGTATCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTTGAT
TTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCTGCCTT
CCGTAGTAACGGGGAGGAAGCCGGGCTTGCAGGGTGCAAGCGAGA
Found at i:34203 original size:22 final size:22
Alignment explanation
Indices: 34129--34216 Score: 78
Period size: 22 Copynumber: 4.1 Consensus size: 22
34119 ACAGCAACAG
*
34129 CAACAACAACAACACC-A-ACAC
1 CAACACCAAC-ACACCAACACAC
34150 CAACACCAACACACCAACACAC
1 CAACACCAACACACCAACACAC
* * *
34172 CGATAACAACACACC-A-ACAC
1 CAACACCAACACACCAACACAC
*
34192 CAACACTCCA-ACACCAACACAC
1 CAACAC-CAACACACCAACACAC
34214 CAA
1 CAA
34217 TAAGAGGGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
20 17 0.31
21 14 0.26
22 23 0.43
ACGTcount: A:0.51, C:0.45, G:0.01, T:0.02
Consensus pattern (22 bp):
CAACACCAACACACCAACACAC
Left flanking sequence: Indices 33629 -- 34128
GCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGACG
GTTCAAAAATATTAGTAGAAGACTTTACGAGCATTACATAACGGCTTTACGAGCTGACCTAATAT
ACTGGTGCGGCTCAAAAAACACATGTGATACTGATCACGTGACTTTACTATTGATACCGTAGATA
GCGTTGATTCTGGCGAACCTGTATATATCCTATATATCCTATATATCCTATATACTACAATATAA
GCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTA
ACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAAAAAACGGCG
CCAATGGCACCCGATCCAACGAATCGAATCGGATACCACTGACGCCACCAACAGGGGGAAAAGGA
GCCATTGGCATCCAACCCTTAAAACAGCAACAGCAACAGCAACAG
Right flanking sequence: Indices 34217 -- 34716
TAAGAGGGGGTGGTACTGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAACTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGACTC
CATCAGAAGTATCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCTGC
CTTCCGTAGTAACGGGGAGGAAGCCGGGCTTGCAGGGTGCAAGCG
Found at i:44110 original size:31 final size:31
Alignment explanation
Indices: 44075--44173 Score: 130
Period size: 31 Copynumber: 3.2 Consensus size: 31
44065 AAATAAAAAG
* *
44075 TAGTTTACAAGGCGAATGAAACCAAAAACCC
1 TAGTTTACAAGGCGAATCAAAACAAAAACCC
* * *
44106 TAGTTCACAAGGCGATTC-AAGCAAAAACCC
1 TAGTTTACAAGGCGAATCAAAACAAAAACCC
44136 TAGTTTACAAGGC-AATTCAAAACAAAAACCC
1 TAGTTTACAAGGCGAA-TCAAAACAAAAACCC
44167 TAGTTTA
1 TAGTTTA
44174 ATAGTGCAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.02
30 25 0.42
31 33 0.56
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.20
Consensus pattern (31 bp):
TAGTTTACAAGGCGAATCAAAACAAAAACCC
Left flanking sequence: Indices 43575 -- 44074
TGGCCGAGGTCCGGCTCACCTGGGATGGGCCTGCGCTCCTTGAGTGTCTCGTGTTGAACCAGTGC
GACCAGCAACAGGTCTTCAATGAATGGTCGTTTGCCTCCATTGGCGCCGACTGCCTCCCCAACTT
GAGACTCGTGCACCTGTTCCTCCCGCCCAAGGAGGGTCCAGTCACCAGGGACATGGTGTGTCGTT
TGCGCGAGCTGTCGCCGTACAACAACCAGTGGATGACCACTGCGGCGAGTCCCTGCGGCGAATGG
CCCGAGCCCGTGCTCGAAGAGGTGTTCCGGAAGTGTCCCGCCAAGTTCGAAGTGATCGGGTACGA
CGCGGACTTGGGCGAGTTCAAGCGCAGCGTGATGTACCGCCGGCCTAGAGGGAAAGCGTAGCTAC
GTCTTATGATTAATGAATGCATTTAACACGAAACAGCGGCGTCTCCAAACTTTTGGGGATGCTAC
CTTGGTTCCCAAAAGGGTAATTTGCAACCGTAGAAAAATAAAAAG
Right flanking sequence: Indices 44174 -- 44673
ATAGTGCAAACCGAGACAAAAAGCCTAGTCATATGGCCATCCGAGCCAAACAATCTGGTTCTACA
TGGCCAACCATATCAGATACAATCGTTTGCCGTTGGTACCCTACAAAACCTCTCTACCTTCTTCT
GTCTATTCAACATGCATTACAACCGCGGCTTCGACGCGTCGGGCCCGCCGGCCGTGGCGTTGGCG
TTGATCTCCAACGCCCCGCCCTCGTTCTCCTTGTCGTCGCCAAAGAACACCACCGTCACCGTCAA
GTCGTCGCGGTACCGCCGCAGCACCGGCAGCGGGATCGAAATGAGCATCAGCGTCTGCTCGCGCG
ACCCGCCGTTGGACAACGCGTTGCGGATGAGGTGGGTCAGCACGTTGGCGTCGTCGAGCATGTAG
TTCAGCGCCCGCGAGTTGCGGCGGAACGGCTTTTTGCTCAGCTTGTCCGCCAGCACGTCCGCCAC
CTCGGGGAGCTTGGCCTCGTTCAGCCCCCACGGCCACAACAGCTT
Found at i:46162 original size:33 final size:33
Alignment explanation
Indices: 46125--46189 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
46115 GGTAAGTAAC
46125 GAGAGAACGGTGAAGG-GGG-AGAGGGTGCTGAGG
1 GAGAG-ACGGTG-AGGAGGGCAGAGGGTGCTGAGG
* *
46158 GAGAGAGGGTGAGGAGGGCAGAGGGTGTTGAG
1 GAGAGACGGTGAGGAGGGCAGAGGGTGCTGAG
46190 AGATGTGGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 3 0.11
32 8 0.29
33 17 0.61
ACGTcount: A:0.26, C:0.05, G:0.58, T:0.11
Consensus pattern (33 bp):
GAGAGACGGTGAGGAGGGCAGAGGGTGCTGAGG
Left flanking sequence: Indices 45625 -- 46124
TTTGGCCAGCACCTGGTCTTCGTTGAGAAGGAACACGCCCTGTTTCTGCTGCTGGGCCAGAATCA
GCTGCAGGGCCAGCAACAGCGACGTCAGCGTCGAGAACATCTTTTCCTGGGCGTCGGGCGACAGC
TCTAGCGAGTAGTAGCTGCGCTGGTTGAACTGGATGTAGCCACCGACAAGGACTAGGCCCAGGAA
CACCGCGACCCGCCGACGGTTGCGTCTGGAGACCGGCTTGGTTGTGAGGGCCCGCACCAGCCGCC
GGGTGAGGGCGGTGGATGGGGGTGCTTTGAGCATCCGCGGGGCCACGCGGAGAATGAACATAGGG
GGTGTGTGCGGGTGTGTGTTGGGTACCGGGACACGTGTGGGATAAGCGCTGGCGCGAGGTTGTGT
CTATAAAGCCCTGGGTTGGCCAATGGGTGCTGGGGTAAAGGGTTTGTGGTTGATGTGCGATTGCC
GTGGGTGCGGCGCGGGCTCGCAACGCGTCACGAGGGGTAAGTAAC
Right flanking sequence: Indices 46190 -- 46689
AGATGTGGCTGTGTTGGTTGTGGTTTTTTGGGTTGCCTTGGCGGTTTCGTTCAGGGTTTCCTATG
CCCTATGCCTAAGGCTGGCTACCATCAGGGTGACAGTGACGCCATCACAGTTTTGCAACCGTCGC
AAAGGCCCAGCGGTCTCCGTACGCATGGTCGTCCCCGTTCCTTTGGTCCGCGGGTGACTGTTGCA
ACGGCTAGACCCTGTGACAAACAATGGATCACGATGACGTAGTGGCGGTTTGGCAGTGTCGCGGT
GTGGATCGTACGAGGGGTTATCGGTGACTACGAGTGTGTTGCTCGCAACCAGGAAACAGGCTTAA
GAGGCAAGAGAAGTGGTTGCTGGTATGCTTGGTTGTGCTGGTGAGGTGTGTGCACAATGTGTGCG
GTGTGTATGGTGTGTTCGGTGTGTGTTCGGTGCTCGGTGCTCGGTGCTCGGTGCTCGGTGCTCGG
AGTGCGCTCAAGGTGCACTTGATGTGCATTAGGGGTGTCGAGGTA
Found at i:46174 original size:17 final size:16
Alignment explanation
Indices: 46140--46184 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
46130 AACGGTGAAG
**
46140 GGGGAGAGGGTGCTGA
1 GGGGAGAGGGTGAGGA
46156 GGGAGAGAGGGTGAGGA
1 GGG-GAGAGGGTGAGGA
*
46173 GGGCAGAGGGTG
1 GGGGAGAGGGTG
46185 TTGAGAGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 11 0.44
17 14 0.56
ACGTcount: A:0.22, C:0.04, G:0.64, T:0.09
Consensus pattern (16 bp):
GGGGAGAGGGTGAGGA
Left flanking sequence: Indices 45640 -- 46139
GTCTTCGTTGAGAAGGAACACGCCCTGTTTCTGCTGCTGGGCCAGAATCAGCTGCAGGGCCAGCA
ACAGCGACGTCAGCGTCGAGAACATCTTTTCCTGGGCGTCGGGCGACAGCTCTAGCGAGTAGTAG
CTGCGCTGGTTGAACTGGATGTAGCCACCGACAAGGACTAGGCCCAGGAACACCGCGACCCGCCG
ACGGTTGCGTCTGGAGACCGGCTTGGTTGTGAGGGCCCGCACCAGCCGCCGGGTGAGGGCGGTGG
ATGGGGGTGCTTTGAGCATCCGCGGGGCCACGCGGAGAATGAACATAGGGGGTGTGTGCGGGTGT
GTGTTGGGTACCGGGACACGTGTGGGATAAGCGCTGGCGCGAGGTTGTGTCTATAAAGCCCTGGG
TTGGCCAATGGGTGCTGGGGTAAAGGGTTTGTGGTTGATGTGCGATTGCCGTGGGTGCGGCGCGG
GCTCGCAACGCGTCACGAGGGGTAAGTAACGAGAGAACGGTGAAG
Right flanking sequence: Indices 46185 -- 46684
TTGAGAGATGTGGCTGTGTTGGTTGTGGTTTTTTGGGTTGCCTTGGCGGTTTCGTTCAGGGTTTC
CTATGCCCTATGCCTAAGGCTGGCTACCATCAGGGTGACAGTGACGCCATCACAGTTTTGCAACC
GTCGCAAAGGCCCAGCGGTCTCCGTACGCATGGTCGTCCCCGTTCCTTTGGTCCGCGGGTGACTG
TTGCAACGGCTAGACCCTGTGACAAACAATGGATCACGATGACGTAGTGGCGGTTTGGCAGTGTC
GCGGTGTGGATCGTACGAGGGGTTATCGGTGACTACGAGTGTGTTGCTCGCAACCAGGAAACAGG
CTTAAGAGGCAAGAGAAGTGGTTGCTGGTATGCTTGGTTGTGCTGGTGAGGTGTGTGCACAATGT
GTGCGGTGTGTATGGTGTGTTCGGTGTGTGTTCGGTGCTCGGTGCTCGGTGCTCGGTGCTCGGTG
CTCGGAGTGCGCTCAAGGTGCACTTGATGTGCATTAGGGGTGTCG
Found at i:46616 original size:7 final size:7
Alignment explanation
Indices: 46606--46644 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
46596 CGGTGTGTGT
46606 TCGGTGC
1 TCGGTGC
46613 TCGGTGC
1 TCGGTGC
46620 TCGGTGC
1 TCGGTGC
46627 TCGGTGC
1 TCGGTGC
46634 TCGGTGC
1 TCGGTGC
46641 TCGG
1 TCGG
46645 AGTGCGCTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.00, C:0.28, G:0.44, T:0.28
Consensus pattern (7 bp):
TCGGTGC
Left flanking sequence: Indices 46106 -- 46605
GTCACGAGGGGTAAGTAACGAGAGAACGGTGAAGGGGGAGAGGGTGCTGAGGGAGAGAGGGTGAG
GAGGGCAGAGGGTGTTGAGAGATGTGGCTGTGTTGGTTGTGGTTTTTTGGGTTGCCTTGGCGGTT
TCGTTCAGGGTTTCCTATGCCCTATGCCTAAGGCTGGCTACCATCAGGGTGACAGTGACGCCATC
ACAGTTTTGCAACCGTCGCAAAGGCCCAGCGGTCTCCGTACGCATGGTCGTCCCCGTTCCTTTGG
TCCGCGGGTGACTGTTGCAACGGCTAGACCCTGTGACAAACAATGGATCACGATGACGTAGTGGC
GGTTTGGCAGTGTCGCGGTGTGGATCGTACGAGGGGTTATCGGTGACTACGAGTGTGTTGCTCGC
AACCAGGAAACAGGCTTAAGAGGCAAGAGAAGTGGTTGCTGGTATGCTTGGTTGTGCTGGTGAGG
TGTGTGCACAATGTGTGCGGTGTGTATGGTGTGTTCGGTGTGTGT
Right flanking sequence: Indices 46645 -- 47144
AGTGCGCTCAAGGTGCACTTGATGTGCATTAGGGGTGTCGAGGTAGCTAAGCCATGCTCGGAACC
GAAACGGGTTGAAAATCCTCGGCGAACCAATCGCTGGCAACTAGGCCACTCAATTGGTATGACCA
ATCCGTCGTGGGTCATTGGCTGGGCGGAGATGGCACGGGATGCACGATGCTCGTCAATGCAAGGT
TTATCCGGTGACGCAGTGGGAGCAAGGGGAAGATCTGGAGGAAGCAGTTTGAAATTTCAAGTGGT
GGTGTGGTGGCTGTTCCGGGTAACCAAGTGGTTTCCCGGGTGACTGGCTCGAGCATTGCGTGAGA
CAGTTCCGGGCCAGACGTATTTTGGCACGTTCTCAGCATTTTCCAGGAAAATCACAACGTCCGCT
TCAAGCCAAAGCTTTGTGACAATTCGCTGTGTCTTCGTTTGCACATTCAGTCCATAGCGTTTGGC
ACTTGACTATTCCCCCTTTGGAAGCTACTACCGAGCTCACCCAAA
Found at i:48732 original size:21 final size:21
Alignment explanation
Indices: 48693--48732 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
48683 CCGCAAGGCC
* * *
48693 GAGACCAAGGAGTTGCGAGCA
1 GAGAACAAGGAGCTCCGAGCA
48714 GAGAACAAGGAGCTCCGAG
1 GAGAACAAGGAGCTCCGAG
48733 GCATGGTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.20, G:0.38, T:0.07
Consensus pattern (21 bp):
GAGAACAAGGAGCTCCGAGCA
Left flanking sequence: Indices 48193 -- 48692
GCCAATTCCGCCCGATGTCCGACGACAGCGACTGCATCAGCACCCCAGCCCGGCTGCTCATCCTG
GACCTGACCGTCCAGTACGAGGATATCGACGCGTTTGACGCCAAAGAGATCGACGACTTTGTGGA
GCTGCTGCTGAAATCAGAGAAAAAGCTGCAAAAGCTGGGGAAACTGGGGTCTTCCCAGGCCAACA
TGACCACGGTGTTAGTGGGGTTGAACAAAGAAGAGCCGGTGGACGAGTTGCACATTGACGTCGAC
CTGCTGCAGATTAGTGCCGAGTTTGAGGCGCTCAAACTGGAGTTTGAGACGACGTTGGCGGCCAA
GGTGATGCTGTTGGAGCGTGAGTTTGACCGCCAGCTCCAGTCGCACGTCGACCACCTGTTGAAGA
TGCAGAAAGAACAGACGGACGCGTTCAACGTGTTCCGAGCCTCGTTCGAGACCAACTTGAAGGTG
TTGATGGCGGAGTTTTTGTTGGCGGAGGCAGACGACCGCAAGGCC
Right flanking sequence: Indices 48733 -- 49232
GCATGGTGAAGGACCTCAGCCACCGGGTAGCGTCGTTGGAGCGCAAACGGGTGCGCGACCGCAAG
GCCAAGGCGAAGGAGATGGCGGCCAAGCAGATGAACGGCAACACCGAGAACCACTTTTTGCACCT
GATACCGCCCACGGGGCCGTCGAGCCCCAAGATGATGATTGTGCCCAACTCGAGCGGGTCCGAAT
AGTGTATAGCATAGGTGGCACCGCCACACCAGCACGCCAGCGGGTCTCTGGCCACAATGGCCGTA
CACGGCCCACCCGTCTTGGGCACTAATAGCAAGGCCGGACCACTGGAGCGTCTATTTATCTTATG
AATTCATTTTTGTATTAGCAAAGGAGGGGGTAGGGATGGTAGTTTGAATTAGGGCGGTGGTAGTT
CGTGAGGCTGTGACTGAGAGAAGCAGGTGTCTGCTGAAGGGCGAGTTTAGGCTTGATGTATATAA
GTTGGGGTGGAGGGTATAGCTTACCATTGTGATCCATAGCTACAT
Found at i:54127 original size:13 final size:13
Alignment explanation
Indices: 54107--54157 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 13
54097 GGGAATGTAG
54107 GAAT-GTGGTGGT
1 GAATCGTGGTGGT
54119 GAATCGTGGTGGT
1 GAATCGTGGTGGT
*
54132 GAATTGTGGT-GT
1 GAATCGTGGTGGT
**
54144 GAGCCGTGGTGGT
1 GAATCGTGGTGGT
54157 G
1 G
54158 TCGTATCTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
12 13 0.39
13 20 0.61
ACGTcount: A:0.14, C:0.06, G:0.49, T:0.31
Consensus pattern (13 bp):
GAATCGTGGTGGT
Left flanking sequence: Indices 53607 -- 54106
CTCGTAGCACGCAATGAATGGTGTCCGACCTGGTCACACAGCCCACCGTGCAACTCACCTCGTCC
AAAGTACCTTACTCGCTTGATATTCATGCTGTGTTCATTAATCATTACGTCATTACTCTACTTTT
GCTGGCTCACCGCCTTGCCCTGGCGCACACTGTTGATATCCGCAATCAACCGCTTGACGTCGGGG
GTTTTCTGGCGCTCCACCGCGAGCACGTCCTTGATCTTGACGTTCCAGAGGGTCACCGACACGCT
GTTGAGCTTGCGGAGCACGTTGCGCTCGACCTGGAGCGCCTGTTTGCGGTGGTGCTGGGAAAGCA
TGAGAAGCCGTTTGGCGTGTGCCTGTTTGAAGTTGGCTATGAGCCTTTTCTTCTGGTCCCGGGTG
AGGGGATCAGGCATGTGTGTGGGTGTGTGTGGTTTGTGTGTGGTGGTACGCGTCGCGAAAAAGTG
TCAACAGTGGAAGGAGACAAGGTTGGTGAGGGGAAGGGAATGTAG
Right flanking sequence: Indices 54158 -- 54657
TCGTATCTGTGTAGACAACAGTTTCTTGGTTCGAGTGGTGGATTTGGCTTCAACCATAATGGTTT
AGTAGAACTAGGATGAAGATAGTGTGTAAGCACTATCCACTTTGAACACGGTGTGAACCCTGTTT
CAGACGGTGAAATTTAATTGCCTTACATTTTCGTCTTATTTCGATACCCCTGGTTTTCAATATCA
CCAACCTTCCAGTCACCGTTGTCCAACTTTGTCCAACTTCGGTCACCTCCTTCGCACTTGATCTA
CGTGTGCAACCAGGGAGCCACCTACGCAAACTATGCGGTAACTCAACTATAAACCAAACCACGAC
ACTAACAACACATCGTCTTCTCCAACTCCACACCCTACACCCTCCCTAATTCCACACTCATCCTT
GGCCACACCTCACTATCCCACTACTGTCCACTCGCCTGCACATTCGCGCACTCAGCACATTTGCC
ATCCAGACCCAGCACATAGCACCCACCGATCCAACCCGCCATTGA
Found at i:56727 original size:12 final size:12
Alignment explanation
Indices: 56710--56740 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
56700 TCACTAGACA
56710 GTATTGGCTACT
1 GTATTGGCTACT
56722 GTATTGGCTACT
1 GTATTGGCTACT
56734 GTATTGG
1 GTATTGG
56741 ATTGATAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.13, G:0.29, T:0.42
Consensus pattern (12 bp):
GTATTGGCTACT
Left flanking sequence: Indices 56210 -- 56709
TAGCCCCGCCCCTGGTGTAGGGGACGAACTTCTCCGTCACGATGCCTGTCCCGCAGGCAAAGTCG
AGAATCTGGGCCCCCTGCTTGAAAAGTGAGTTAAGGAAGTTGTTGTGGTAGGTCTTAGGATCTGG
CAAAACACTCTCGTGGATACCTAAGCTGTCCAATCCTGGGTCGCCCACGACTTCCCCGCCTTCTT
CAGTTCTACAGCTGGACCTGTCTAGCTCAAGAAGCGTTTTCGCAAAAAGAGTCAGCATGGCCCGT
GTGGCATCACCACTGTCATACTGCGCAGCCACACTCTCGTCAAGCTCCTTTATGTTAGCAGCAAT
GGCCTGACGATGGCTTTCATGGTCAAACTCCATGGTGCATTGGCTGCGAAATACGCACGAAAGTT
GCAACACTACACCAACAAATCAATGTTATATAATTCGCACGACACCCATGCCAGAGTCTACTCCA
CAACTTGTGGTTTGGTTGATTCACATGACTAATGTTCACTAGACA
Right flanking sequence: Indices 56741 -- 57240
ATTGATAATCCAAAAGTACTAACGTTATTTCTTTTTCTCGTCGCTCGACTACCTACTGTCGCAAT
GCGAAGTAGCAGCTAAAGTTTAGGGTATTCATACTTGGTCTTCACCACTCGCTGGCAAAACTTGG
CAGTGAGTTTTAAAAGCTCAAGCCGGTGGAGATATTCTACTTTACCCATGTGGCAAACGTGAAAT
GGCACAGCGTTCACGTCACAATCAAGCCTTTCGTTGGGCTTGGGATTCCAATATTCGCAAACGGA
GCACCAAAACAACCTGTTATGAGGTACGTTCTCCAGAAAAGCTGCTAAGGTACGAAAGGCATCAT
ATTTTTCAGCAACGTCGGGGATTGTGTTACACCAATTGGTCAACAACTCAAATTGCCGCACGCGA
AGATCACGTCTCATAAAACGCAAAGGTTTATATCCGATTCGTCTGTGATAACCCCATCTTTTTGC
GGGATTTATCATACTCCACTCGTTCCACAACGCAATCTCGTCTGG
Found at i:61874 original size:12 final size:12
Alignment explanation
Indices: 61857--61882 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
61847 GAAGGAGAGC
61857 CCCAGAGACAGT
1 CCCAGAGACAGT
61869 CCCAGAGACAGT
1 CCCAGAGACAGT
61881 CC
1 CC
61883 TCGGGTGCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.38, G:0.23, T:0.08
Consensus pattern (12 bp):
CCCAGAGACAGT
Left flanking sequence: Indices 61357 -- 61856
TGGACATCGGCTTTGACGTGGCCGCAGCCAACGATGCCATTGACCGCAAGGGCTGCGATGTCCAG
GCGTGTGTCAACTATATCATGGCCAAGGCTGCTGGGAAGGAGGACAGCGGGGACTCCAGAAGACC
CGCTTCCGGGCGTCTGAGCCGCCAGAGCCGCCCACAGAACCCGTCACAGCCCAGTGACGACGACA
TTCTTCGCCGTGACACCCCCGATTGGCTTAACAAGGGTGTTTCCATGGGGTTTTCCCTCTGGTCC
AAGGCCAACCAGACGATCAAAAAGAACATTGACCAGTTTGTGGAGGGGCCCGCTCGCGACGACGG
GTTGCCTGCGTGGATGCAGCTGGCCCAGAAGTACAAGCTGGAGGCGCTCGAGAAGAAGTATGGCG
GCGAAGATTACGGGCTGGACCTGGAGAACATCGACCAGGAGGAGATCCAGCGGATCATGCGCGAG
GAGCGCGAGAAGCGCGAGCGACGGAGGTACGAGGGGAAGGAGAGC
Right flanking sequence: Indices 61883 -- 62382
TCGGGTGCTGGGCGAACGCCCGCGGTCGGGACGTGCGCTGGCTGAGCCTCGCTCTGGGCGGGTGC
TGGCTGAGCCTCGGGGGTCTGGACGCGCACTGGCTGAGCCCAGAGCCCCAGTCAAGCCTTCTCGT
GCCGAGCCCGAGGAGTACGCGCTTCCCCAGCGTCCGCTGCGGCGCCAGAGACCGTCGGAGTCTGC
TTCTGAGAGCTCGCGGCCAGCTTCGCGGACTGCTGTGCCTGCTCCCAGCCAAGAGCGAGCCTCGC
CCGCGCCGCCAAAGCCGGCTCCGGCTCCCACGGCCGAGTTTGACCTCTTGGGGATCAACTCTGCG
CCCACATCGCTGCTTCGGAGCACGGCTCCCCTCAACCAGTTTGAGGAGGTGGACTACTCCACCGC
CAAGGACACGGCCAGCGAAGCCTACCGCACGGGCGACTACTCCACCGCGCTCGAGCTGTACCAGC
GGTGTCTCGAACGGCTTCCCGAGAGTCACGAGCTCCGCGTAGTGA
Found at i:62586 original size:21 final size:21
Alignment explanation
Indices: 62561--62600 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62551 CCGAGGTGTA
62561 CGAGCTCTTGGAGAAGTACGC
1 CGAGCTCTTGGAGAAGTACGC
* *
62582 CGAGCTGTTGGAGATGTAC
1 CGAGCTCTTGGAGAAGTAC
62601 ACGGTGTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.23
Consensus pattern (21 bp):
CGAGCTCTTGGAGAAGTACGC
Left flanking sequence: Indices 62061 -- 62560
AGACCGTCGGAGTCTGCTTCTGAGAGCTCGCGGCCAGCTTCGCGGACTGCTGTGCCTGCTCCCAG
CCAAGAGCGAGCCTCGCCCGCGCCGCCAAAGCCGGCTCCGGCTCCCACGGCCGAGTTTGACCTCT
TGGGGATCAACTCTGCGCCCACATCGCTGCTTCGGAGCACGGCTCCCCTCAACCAGTTTGAGGAG
GTGGACTACTCCACCGCCAAGGACACGGCCAGCGAAGCCTACCGCACGGGCGACTACTCCACCGC
GCTCGAGCTGTACCAGCGGTGTCTCGAACGGCTTCCCGAGAGTCACGAGCTCCGCGTAGTGATCG
CTCTGAACCTCGGGGTGGTGTATAAGCATGTGGGCCAGTTGAAGGACTCGCTCGCGGCCATCGAG
GCCGGTATGGCTCTCGTAGACCCCGAGGAAGTCAATGGCCCTGCCCAGATCGGGGGGAAGCCTGC
CAAGTACTGGTACACCAAGATGGTGCTCACCAAGGCCGAGGTGTA
Right flanking sequence: Indices 62601 -- 63100
ACGGTGTTGGTGACCAAATTGGGGGTGTCCGACCGCAAGGTGACCGACGGCAAGCGCAGAGTGGA
CAAGGTGGTGAACCCGCAGAACTACCGCCCCAAGCCCGCGAAGAAGAGCGCTCCCGCTGCTCCGA
AAGCGGCTCCCAAGCCCAAGCAGGCTGCTCCCAAGCTGACGGAGCCGTCCTCCGAGCAGCTTGAT
GCGATCGAGCAAGAGGTGATTGCCTGGGCTACCCGCAAACAGAACAACCTCCGGGGTATGCTCAC
CAACCTCGACGAGATCATCCCGGCCAAGATCACCATGAAGCCCCAACTCCGCAAGTTGGCGCTCA
ACGACTTGATGCTTCCGAAGCAGGTCAAGTTGTCGTACATGAAGGTGATCTCGGCCATTCACCCG
GACAAATTGGCGTCGCAGTGCCCCACGGACTCGCGGGAGTGGCTCTTGTGCAACTCGGTGTTTAT
CCGGTTGAACAAGGCCTGGGAGCAGTTTAAGGTGGACGAGAACGT
Found at i:64210 original size:11 final size:11
Alignment explanation
Indices: 64196--64225 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
64186 GAGGATTAAA
64196 GGAGGAGGATC
1 GGAGGAGGATC
64207 GGAGGAGGATC
1 GGAGGAGGATC
*
64218 TGAGGAGG
1 GGAGGAGG
64226 TTAAACCGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.07, G:0.57, T:0.10
Consensus pattern (11 bp):
GGAGGAGGATC
Left flanking sequence: Indices 63696 -- 64195
GGTTTGTTCCCGTACCTTTTTCTCGTACAATGCCTTGTCTTTGGTGAACGCCTTCCACGCAGGCT
CCTGCGCCGGCGAGTTCGGGTTGGGCAGGTCCAACAACTCCTGGATGCCCAAGGCAATCTGCTTG
AGAGTAATGGCTGGTCGCCAGTCCTGCTCCTCGTTGAGAATGGACAAGCACACGGTGCCCAGCGG
GTAGACGTTGGGGTGGTAAAAGCCCTGGGGGAACTTGACCTTCGGGGGCTTCAGGGGATACTCCT
CAGGGAAGTCGAAGGTGATCGGGAACACGGCGTCGGCCCAGATAGTGCCGGACTTGCCCGGGATA
CCGGCGGTCCACTTGGTGAGGTCAAGCAGGCCGTCAGCGGCCTTGTTGGGCTTGGCATAGAAGCC
GAACGGGTGGTCCTTGCGCCACTGCTTGCGTTCTTCCTTGAGACGGATATGACAAAGGGACATGG
TCTATGGTCTATTAAAGGTGGGGAGGATCCGATGGGAGGATTAAA
Right flanking sequence: Indices 64226 -- 64725
TTAAACCGGAGGGGAGGAGGTTCGGGTTCGATGAGGAGGTTTCAGGAATGGGTCTCTGGGTAACC
TTCGAACGTTCTCGAACGATTCTGATGCGGTTTCAGGTTAGTCAGGCCTTAGTCAGGCACGGAAG
CTGGACTCTGGGTGTGCGGGCGGTTCAGTGGGTCTGAGTACTTCTGGATGATCGCGTTAACGCCG
CTCTGAACCAGAAGCTCGGGATGTAGACGGATGTATCAAGCCCTACGGGTGTTGTGGTTCGGGAC
TCGCGCGAAAATTTTGTCCTCGGTGAGGACAGGCGACTGGGTGTGGTGCTATAAACGGAGGCGTG
CTAAATTGCGGGCTTCAAGCTCGGGTAGCTGGGCATAGCAAACTTAGCCACACTGGGGATACTGG
GCAGAAAGCTGTCAACTCACTGTTTGGTGGGGTGAAAAAAGTGTCCGCCCAGAGTGGTGGGAGCC
CATTGGCTGGGGGGGCCGCAGGGAGAGGGCGAAATGGGTGTAATC
Found at i:65762 original size:12 final size:12
Alignment explanation
Indices: 65747--65776 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
65737 TAGAACGAGA
65747 CGTTGAACTAGG
1 CGTTGAACTAGG
65759 CGTTGAACTAGG
1 CGTTGAACTAGG
65771 CGTTGA
1 CGTTGA
65777 GCTCGTCGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (12 bp):
CGTTGAACTAGG
Left flanking sequence: Indices 65247 -- 65746
AATAGCGAATTCACTGACCCCAATTACACAGCGCTTGTGTACTTCCAGATCAAGAACCAGGAGTT
CAAATTGCTTGGCGGTCTCAATCCGAACAAGCCCCTGGCCATATACAGGTTGAACACGGCCCTGG
TGGTTGACGACGACATGATGGGGGACGAAGTCAACATTGGCATCTCCATTGAGCCGACACCACAA
GCGGAACAGCAGCTTATGCTGCTTACCAAGGCCCCCGCGGCTCCGGCAGCTCCCTCGGCGCCCAA
GAACGTGGACGAAGTCGCCACTTTGGCCAACAAGATTGTGGGACACGCTTACACCTACTTGGGCT
CATTTATAGACAACCAGGGTAAGGTGCCCATGAAGGCTTTTGACTCGTGGTGGGACAAGTTTAAG
CAGAAGCTCCAGAATAATCCGAGATTTTTAGACCTGGTAAATAATGATTAATGATATGGCAAGAA
GAAACCCTGAAGAATGGCCAGCGAGTTCACGGCCTTAGAACGAGA
Right flanking sequence: Indices 65777 -- 66276
GCTCGTCGCATCGAGTTGCCAACTTCTGATGTGAGCCATTTGCAGCCAGACACTTAATTCCGTGC
ATTACACCATACATACCATATATCTCTCCATATTTTCTCCAAATACGCCTCTTCCTAAATACCCA
ACCACATGTCTTTTTACGCCTTCACCTCTCCAAGCTTGGGGGTCTTCACCTTCGCGAACTTACTC
CGCATGTCCAACTTTCTCACGTTGTCCACTACGGGGTCCAGCGGTTCGTTGATGAGGATAATCGT
CGAGTTGTTAGCAAAAGGGCTGATCTCCACCCACAGTCTGACCGCGAGCTTCATAATGAAACAAA
GAGTGTTGTCCTCTCCCTCCTTTCCTTCTTCGGTAACCACAGAGTGACTGAGAAGAGCGTAGTCC
TCGTCAGCATTCTCCACGGGGGTGCCAAAGTGACGAGCCACCTTCTCGGTAAGGGTCTCACGCCC
CTTAGCAAGGTCCTTCAAGGCAATAATGAGCCCAAGCGACACTAC
Found at i:71340 original size:27 final size:27
Alignment explanation
Indices: 71299--71359 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
71289 TCAATCCCCG
*
71299 CCCCCACCACCTCCACCGTCTCCACCA
1 CCCCCACCACCTCCACCGTCCCCACCA
* *
71326 CCTCCACCACCTCCACTGTCCCCACCA
1 CCCCCACCACCTCCACCGTCCCCACCA
71353 CCCCCAC
1 CCCCCAC
71360 ATCCACCACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.18, C:0.67, G:0.03, T:0.11
Consensus pattern (27 bp):
CCCCCACCACCTCCACCGTCCCCACCA
Left flanking sequence: Indices 70799 -- 71298
GGCTGAAATTTCTAGGCAGGTCATCCGTCGTACCGGGTGCAAAGGGGAGCCATTGTCCGATCTGG
CAGTTAGCTGATGTTACCAATGGGGATGGGGTAACTCCGATTCGTGGGGTTGACCGAATCGTGGG
GTGATTAGTGTTACTACATTTTCACATTTCTGAGAGATGGAAGGAAATCAAAAAGACCAGCTGGC
GTTTTCAGACAACGGAGATCCTCGCGGGACTCCTTGATTTTACGTGTTTGTGGTGGCCAGGGGAC
ATGAGATTACTTGGCGGTCTGGTTACGAGTGATGGCCCATCAGCCCATGACAACGGTCGCCTTGA
ATAAGTGTAGGTGACTAGTCGTGTTCATTGAATACATAGTAGGCTATGCCAGTTCGGTGGGTGTT
TGTAGGTGGCCCAGATGGTTTATAATTGGGAGATTGGCCCGAATGGACACGGTCTTGGCGGCCGC
AAGCTGGTTGTCTAGTGCCAAGCGTGCCAACGGGCTCAATCCCCG
Right flanking sequence: Indices 71360 -- 71859
ATCCACCACTGTCTCCTCCGTATCCTCCATAGGACCCATCGTTGTGGCCCAGGTGGTAGGCCCCG
CCATCACTCGCGGAGCCACATACATTACCGTTGGAGTCGCGCTGGCGGCGCTCGCGACGTCGTTG
TTTGGAAGCTGAAGAACCCATGAATAGTATGAGCTCCAAGCTGGGGATTCTACTCGTTTATATAG
AGATTCGGGACGGTGTTAGTGATTGACGTCATCTCGTATTTGGAATCTGTGTGCAGGAAGTAGTG
ATAACCACCTTCTAAAAGCGACGTGAAACGAGTGAATAATGAAGCATGAAGCTTGATTAGGAAGG
ATCGGCTATTCGGTAGCCTACTCGGCTGACCACCTCGTTTGTGTTCTGATTTTTGGGTCGTATCA
CTTGTATTCACTATCCTACTACCTGTTAGACTTCGTATTGTTAAAACCCACCGCAGCCGCCTCCT
CCACCGTCTCCCCCGCTTGAACCGCCACATCCACCACTGGAACCA
Found at i:71359 original size:9 final size:9
Alignment explanation
Indices: 71302--71341 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
71292 ATCCCCGCCC
71302 CCACCACCT
1 CCACCACCT
**
71311 CCACCGTCT
1 CCACCACCT
71320 CCACCACCT
1 CCACCACCT
71329 CCACCACCT
1 CCACCACCT
71338 CCAC
1 CCAC
71342 TGTCCCCACC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.20, C:0.65, G:0.03, T:0.12
Consensus pattern (9 bp):
CCACCACCT
Left flanking sequence: Indices 70802 -- 71301
TGAAATTTCTAGGCAGGTCATCCGTCGTACCGGGTGCAAAGGGGAGCCATTGTCCGATCTGGCAG
TTAGCTGATGTTACCAATGGGGATGGGGTAACTCCGATTCGTGGGGTTGACCGAATCGTGGGGTG
ATTAGTGTTACTACATTTTCACATTTCTGAGAGATGGAAGGAAATCAAAAAGACCAGCTGGCGTT
TTCAGACAACGGAGATCCTCGCGGGACTCCTTGATTTTACGTGTTTGTGGTGGCCAGGGGACATG
AGATTACTTGGCGGTCTGGTTACGAGTGATGGCCCATCAGCCCATGACAACGGTCGCCTTGAATA
AGTGTAGGTGACTAGTCGTGTTCATTGAATACATAGTAGGCTATGCCAGTTCGGTGGGTGTTTGT
AGGTGGCCCAGATGGTTTATAATTGGGAGATTGGCCCGAATGGACACGGTCTTGGCGGCCGCAAG
CTGGTTGTCTAGTGCCAAGCGTGCCAACGGGCTCAATCCCCGCCC
Right flanking sequence: Indices 71342 -- 71841
TGTCCCCACCACCCCCACATCCACCACTGTCTCCTCCGTATCCTCCATAGGACCCATCGTTGTGG
CCCAGGTGGTAGGCCCCGCCATCACTCGCGGAGCCACATACATTACCGTTGGAGTCGCGCTGGCG
GCGCTCGCGACGTCGTTGTTTGGAAGCTGAAGAACCCATGAATAGTATGAGCTCCAAGCTGGGGA
TTCTACTCGTTTATATAGAGATTCGGGACGGTGTTAGTGATTGACGTCATCTCGTATTTGGAATC
TGTGTGCAGGAAGTAGTGATAACCACCTTCTAAAAGCGACGTGAAACGAGTGAATAATGAAGCAT
GAAGCTTGATTAGGAAGGATCGGCTATTCGGTAGCCTACTCGGCTGACCACCTCGTTTGTGTTCT
GATTTTTGGGTCGTATCACTTGTATTCACTATCCTACTACCTGTTAGACTTCGTATTGTTAAAAC
CCACCGCAGCCGCCTCCTCCACCGTCTCCCCCGCTTGAACCGCCA
Found at i:71368 original size:27 final size:27
Alignment explanation
Indices: 71299--71372 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
71289 TCAATCCCCG
* * *
71299 CCCCCACCACCTCCACCGTCTCCACCA
1 CCCCCACCACCACCACTGTCCCCACCA
* *
71326 CCTCCACCACCTCCACTGTCCCCACCA
1 CCCCCACCACCACCACTGTCCCCACCA
71353 CCCCCA-CATCCACCACTGTC
1 CCCCCACCA-CCACCACTGTC
71373 TCCTCCGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.19, C:0.64, G:0.04, T:0.14
Consensus pattern (27 bp):
CCCCCACCACCACCACTGTCCCCACCA
Left flanking sequence: Indices 70799 -- 71298
GGCTGAAATTTCTAGGCAGGTCATCCGTCGTACCGGGTGCAAAGGGGAGCCATTGTCCGATCTGG
CAGTTAGCTGATGTTACCAATGGGGATGGGGTAACTCCGATTCGTGGGGTTGACCGAATCGTGGG
GTGATTAGTGTTACTACATTTTCACATTTCTGAGAGATGGAAGGAAATCAAAAAGACCAGCTGGC
GTTTTCAGACAACGGAGATCCTCGCGGGACTCCTTGATTTTACGTGTTTGTGGTGGCCAGGGGAC
ATGAGATTACTTGGCGGTCTGGTTACGAGTGATGGCCCATCAGCCCATGACAACGGTCGCCTTGA
ATAAGTGTAGGTGACTAGTCGTGTTCATTGAATACATAGTAGGCTATGCCAGTTCGGTGGGTGTT
TGTAGGTGGCCCAGATGGTTTATAATTGGGAGATTGGCCCGAATGGACACGGTCTTGGCGGCCGC
AAGCTGGTTGTCTAGTGCCAAGCGTGCCAACGGGCTCAATCCCCG
Right flanking sequence: Indices 71373 -- 71872
TCCTCCGTATCCTCCATAGGACCCATCGTTGTGGCCCAGGTGGTAGGCCCCGCCATCACTCGCGG
AGCCACATACATTACCGTTGGAGTCGCGCTGGCGGCGCTCGCGACGTCGTTGTTTGGAAGCTGAA
GAACCCATGAATAGTATGAGCTCCAAGCTGGGGATTCTACTCGTTTATATAGAGATTCGGGACGG
TGTTAGTGATTGACGTCATCTCGTATTTGGAATCTGTGTGCAGGAAGTAGTGATAACCACCTTCT
AAAAGCGACGTGAAACGAGTGAATAATGAAGCATGAAGCTTGATTAGGAAGGATCGGCTATTCGG
TAGCCTACTCGGCTGACCACCTCGTTTGTGTTCTGATTTTTGGGTCGTATCACTTGTATTCACTA
TCCTACTACCTGTTAGACTTCGTATTGTTAAAACCCACCGCAGCCGCCTCCTCCACCGTCTCCCC
CGCTTGAACCGCCACATCCACCACTGGAACCACCTCCGTCTCCCC
Found at i:76538 original size:21 final size:22
Alignment explanation
Indices: 76514--76567 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
76504 TGGGTCAGCG
*
76514 CGAGCGCGGCCTT-CGTCTCCT
1 CGAGCGTGGCCTTCCGTCTCCT
* *
76535 CGAGCTTGG-CTTCCGTCTCGT
1 CGAGCGTGGCCTTCCGTCTCCT
76556 CGAGCGTGGCCT
1 CGAGCGTGGCCT
76568 GGGTCTGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 3 0.11
21 22 0.81
22 2 0.07
ACGTcount: A:0.06, C:0.37, G:0.31, T:0.26
Consensus pattern (22 bp):
CGAGCGTGGCCTTCCGTCTCCT
Left flanking sequence: Indices 76014 -- 76513
GGTCAAGTACTCGAGGCTCGGGTGGTCGAACCGGGTCAGCAACAGCTCAAACTCGGCCTTGGGGA
TCGCCACGTACCCGTGCTCGCTCGCACGCTGGGTGATGGGCTTGTCCGCCACCTCCTTGAGCGCC
TTGTAGTCGCCCACCGCGATCACCGCCATGCCAAACTCGGCAGCGTGCGAGGTGATGTCGGTGAG
ACTGGGCTTGGTGGCCTTGACCACCATCTCGTCGTAGTCCTGCGCGGGCACAAGCCGCATCTCCG
CAGCCCGGGCCCGGTCCTCGAGGGTCTCCAGCGCCCGCTTCTTGAGCCGGGCCAAGTCCGCGAGC
TCGACGATCGCCATGTTGTGCTTGTCGGCCGCGGCCTTGAGCCCGTCCACCAGCTGGAGACGCGC
GTGCTCCGCGGCCGTGAGCACCACCATCTCGGGCCCGTTGAGCTTCGCGAGCTCGGTGTCGCGGA
CCTTGAGGGTGGTGGCGGCCTCGTCGAGCGACGCCTGGGTCAGCG
Right flanking sequence: Indices 76568 -- 77067
GGGTCTGTTTGAGCCGGGACGACGACGACTCCGTCAACGTCTGGGCCGCGGCCTTGGCGTCGTCG
CGGGCCTTCTCCGCCTCCGCACGCGCCTTCTCCGCCTGCTCGAGCCGGGCCATGATCGCCGCGTA
CTCCTCGTCGCTGACAATCTTCTTTTGGCTCTGCTTGGCCGCCTCTTCCAACGGCATCTGCGCCT
GCTTTTGCAACGCCTCGTGGTCGTCGCGGGACACCGCCACCAACCCGAGGGCCGCCGCGGCCGCA
GCAATCCCCGCCGCGGTGCCGTGCTTGTCCGAGAGCAGCTGGTGCTGCTCCGCAAGCTCGCGGTG
GCTGTCTTCAAGCGTCGTGTGCTTACCAGAAAGGGTCGTGTGCTGCTCAGTAAGCGCCTGGTGGT
CGTGGGCAAGCGCCTGGTGCTGCTCGGTGAGCGCGTGGTGGTCGCTCTCAAGGCCCCGCTGCTTC
TCCTCGAGCTTGCCGTGGCTCTCCTGGAGCGCCCGGTGCGCCTTG
Found at i:76573 original size:21 final size:21
Alignment explanation
Indices: 76488--76573 Score: 57
Period size: 21 Copynumber: 4.1 Consensus size: 21
76478 TGGTGGCGGC
** *
76488 CTCGTCGAGCGACGCCTGGGT
1 CTCGTCGAGCGTGGCCTGCGT
* * *
76509 CAGCG-CGAGCGCGGCCTTCGT
1 C-TCGTCGAGCGTGGCCTGCGT
* * * *
76530 CTCCTCGAGCTTGGCTTCCGT
1 CTCGTCGAGCGTGGCCTGCGT
*
76551 CTCGTCGAGCGTGGCCTGGGT
1 CTCGTCGAGCGTGGCCTGCGT
76572 CT
1 CT
76574 GTTTGAGCCG
Statistics
Matches: 47, Mismatches: 16, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.07, C:0.35, G:0.35, T:0.23
Consensus pattern (21 bp):
CTCGTCGAGCGTGGCCTGCGT
Left flanking sequence: Indices 75988 -- 76487
GCAAACTTGTGCTCCTTGGCCTTCAGGGTCAAGTACTCGAGGCTCGGGTGGTCGAACCGGGTCAG
CAACAGCTCAAACTCGGCCTTGGGGATCGCCACGTACCCGTGCTCGCTCGCACGCTGGGTGATGG
GCTTGTCCGCCACCTCCTTGAGCGCCTTGTAGTCGCCCACCGCGATCACCGCCATGCCAAACTCG
GCAGCGTGCGAGGTGATGTCGGTGAGACTGGGCTTGGTGGCCTTGACCACCATCTCGTCGTAGTC
CTGCGCGGGCACAAGCCGCATCTCCGCAGCCCGGGCCCGGTCCTCGAGGGTCTCCAGCGCCCGCT
TCTTGAGCCGGGCCAAGTCCGCGAGCTCGACGATCGCCATGTTGTGCTTGTCGGCCGCGGCCTTG
AGCCCGTCCACCAGCTGGAGACGCGCGTGCTCCGCGGCCGTGAGCACCACCATCTCGGGCCCGTT
GAGCTTCGCGAGCTCGGTGTCGCGGACCTTGAGGGTGGTGGCGGC
Right flanking sequence: Indices 76574 -- 77073
GTTTGAGCCGGGACGACGACGACTCCGTCAACGTCTGGGCCGCGGCCTTGGCGTCGTCGCGGGCC
TTCTCCGCCTCCGCACGCGCCTTCTCCGCCTGCTCGAGCCGGGCCATGATCGCCGCGTACTCCTC
GTCGCTGACAATCTTCTTTTGGCTCTGCTTGGCCGCCTCTTCCAACGGCATCTGCGCCTGCTTTT
GCAACGCCTCGTGGTCGTCGCGGGACACCGCCACCAACCCGAGGGCCGCCGCGGCCGCAGCAATC
CCCGCCGCGGTGCCGTGCTTGTCCGAGAGCAGCTGGTGCTGCTCCGCAAGCTCGCGGTGGCTGTC
TTCAAGCGTCGTGTGCTTACCAGAAAGGGTCGTGTGCTGCTCAGTAAGCGCCTGGTGGTCGTGGG
CAAGCGCCTGGTGCTGCTCGGTGAGCGCGTGGTGGTCGCTCTCAAGGCCCCGCTGCTTCTCCTCG
AGCTTGCCGTGGCTCTCCTGGAGCGCCCGGTGCGCCTTGGCCGTC
Found at i:81545 original size:21 final size:21
Alignment explanation
Indices: 81519--81559 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
81509 CGAGCTCTGC
81519 CTTGGTCGTGCCCAACTCAGT
1 CTTGGTCGTGCCCAACTCAGT
81540 CTTGGTCGTGCCCAACTCAG
1 CTTGGTCGTGCCCAACTCAG
81560 ACCGCGTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.15, C:0.34, G:0.24, T:0.27
Consensus pattern (21 bp):
CTTGGTCGTGCCCAACTCAGT
Left flanking sequence: Indices 81019 -- 81518
CGGCTGGGGTCGTTGGCGCGCTCCCAGAGCTTGGTGTACTCGGGCCGGGTCATGGTGAGCAACCC
GAGCTCGTCTGCGCGCACCTTGAGCTGGTCTTCCAGAACGGGGGCCACGAGCCGCTGGTGCTCGG
CCTCGGGCACCACCACCTGGCCGAGCCGGCTGGCGGAGTCCTTGACGTCGTCGAGCGTGGGCTGG
GTCAACCGCGCGTGCTCGGCCTGGGGGATGACGGTGTGGTTGAGTGCGGTGGCCCGCGAGCGCAC
CAGCGCAAGCAGCGGGGTCTCGAGCTCCACGAGGCGCTCGTCGGCCACGAGCTGGTGCTTGTGGG
CCCGCGCACGGTGGGTGAGGGTGTCCAACGACGGCTGCTGGAGGGCGTGAGCCTCGTCTTGCGCG
AGAACCACCAAGTGGAGCCGCTGGGCCATGTCGCGGACGAGGTCCGGCGACGGGTTTGCGAGCTG
GGTGGACGCCTGTTCAAGCTCGGCCGTGGCCTTTTCGAGCTCTGC
Right flanking sequence: Indices 81560 -- 82059
ACCGCGTCGTGTCCAACTCAGATTTCGCGGTGGTCAACGCGGTCGCGGTCGTGTCCAACTCAGAA
CGGGTCGTGTCCAACACAGACTTGGTAGAGACAAGCTCGGCTTGCGCCTGTTCAAGCGCCACCGC
CCGCTCCTGCTCGCGCTGGTGGGCAGCGTCCATCTGGCGGGTGTGTTCCGCCACCGTATGCTCCA
TCTCGCGCTTCCGTTCGCTCTGCTCCACTTCTCTCTCCCCTCTCTCCTTCTCCCTCTTCCCCTCC
AACTCCGCCTCGGGCACCACCACAAGGCCCTTGGCCCGGAGCCGCCGCTCCATCTCCTGCTCAGA
CACCAACTGCGCGTACTCCTCGGGCAGGAGCACGCTGTAGCCCGCCCGCTTGGCCCGGGCGACCG
CGGCGGTGTCGTCGCTGAGCTCGGCAAACTGCTGCGCCAGAAGCACGTGGTACCCGGCCTGGGCG
GCCGCCGCAAGCGCCAGCTCCACCGACGGCGTCTTGGCCGCCCCC
Found at i:81568 original size:21 final size:21
Alignment explanation
Indices: 81522--81581 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
81512 GCTCTGCCTT
* *
81522 GGTCGTGCCCAACTCAGTCTT
1 GGTCGTGCCCAACTCAGACTC
81543 GGTCGTGCCCAACTCAGAC-C
1 GGTCGTGCCCAACTCAGACTC
*
81563 GCGTCGTGTCCAACTCAGA
1 G-GTCGTGCCCAACTCAGA
81582 TTTCGCGGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
20 1 0.03
21 34 0.97
ACGTcount: A:0.18, C:0.35, G:0.25, T:0.22
Consensus pattern (21 bp):
GGTCGTGCCCAACTCAGACTC
Left flanking sequence: Indices 81022 -- 81521
CTGGGGTCGTTGGCGCGCTCCCAGAGCTTGGTGTACTCGGGCCGGGTCATGGTGAGCAACCCGAG
CTCGTCTGCGCGCACCTTGAGCTGGTCTTCCAGAACGGGGGCCACGAGCCGCTGGTGCTCGGCCT
CGGGCACCACCACCTGGCCGAGCCGGCTGGCGGAGTCCTTGACGTCGTCGAGCGTGGGCTGGGTC
AACCGCGCGTGCTCGGCCTGGGGGATGACGGTGTGGTTGAGTGCGGTGGCCCGCGAGCGCACCAG
CGCAAGCAGCGGGGTCTCGAGCTCCACGAGGCGCTCGTCGGCCACGAGCTGGTGCTTGTGGGCCC
GCGCACGGTGGGTGAGGGTGTCCAACGACGGCTGCTGGAGGGCGTGAGCCTCGTCTTGCGCGAGA
ACCACCAAGTGGAGCCGCTGGGCCATGTCGCGGACGAGGTCCGGCGACGGGTTTGCGAGCTGGGT
GGACGCCTGTTCAAGCTCGGCCGTGGCCTTTTCGAGCTCTGCCTT
Right flanking sequence: Indices 81582 -- 82081
TTTCGCGGTGGTCAACGCGGTCGCGGTCGTGTCCAACTCAGAACGGGTCGTGTCCAACACAGACT
TGGTAGAGACAAGCTCGGCTTGCGCCTGTTCAAGCGCCACCGCCCGCTCCTGCTCGCGCTGGTGG
GCAGCGTCCATCTGGCGGGTGTGTTCCGCCACCGTATGCTCCATCTCGCGCTTCCGTTCGCTCTG
CTCCACTTCTCTCTCCCCTCTCTCCTTCTCCCTCTTCCCCTCCAACTCCGCCTCGGGCACCACCA
CAAGGCCCTTGGCCCGGAGCCGCCGCTCCATCTCCTGCTCAGACACCAACTGCGCGTACTCCTCG
GGCAGGAGCACGCTGTAGCCCGCCCGCTTGGCCCGGGCGACCGCGGCGGTGTCGTCGCTGAGCTC
GGCAAACTGCTGCGCCAGAAGCACGTGGTACCCGGCCTGGGCGGCCGCCGCAAGCGCCAGCTCCA
CCGACGGCGTCTTGGCCGCCCCCGTGAGCTGCTGGTACTCGTCGT
Found at i:82359 original size:21 final size:21
Alignment explanation
Indices: 82335--82385 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
82325 CTGCGCCTGG
82335 CTGGCTCC-CACGGTGGC-TCTC
1 CTGGC-CCACACGGT-GCTTCTC
*
82356 CTGGCCCACCCGGTGCTTCTC
1 CTGGCCCACACGGTGCTTCTC
82377 CTGGCCCAC
1 CTGGCCCAC
82386 CTTGTGGTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.06, C:0.47, G:0.25, T:0.22
Consensus pattern (21 bp):
CTGGCCCACACGGTGCTTCTC
Left flanking sequence: Indices 81835 -- 82334
ACCACCACAAGGCCCTTGGCCCGGAGCCGCCGCTCCATCTCCTGCTCAGACACCAACTGCGCGTA
CTCCTCGGGCAGGAGCACGCTGTAGCCCGCCCGCTTGGCCCGGGCGACCGCGGCGGTGTCGTCGC
TGAGCTCGGCAAACTGCTGCGCCAGAAGCACGTGGTACCCGGCCTGGGCGGCCGCCGCAAGCGCC
AGCTCCACCGACGGCGTCTTGGCCGCCCCCGTGAGCTGCTGGTACTCGTCGTAGGGAATCATCAC
GAGATTGCGCTCGCTGACGTAAGCGTCGATCTTCTTCTGGGACGCCTGGCGGCGCAACTGGTTGG
TGAAGAGCGCTGCTGCCTCTCGCAGCGCCCCGTCGTCCTCGTCGGACAGGTCCTCGACGTGCACG
AACCCGGGAGCCTCGTCTCCCCCAAACTCAAACAGGGTGTCCAGCCCCGAGCCCTCCAGCGAGCC
CAGCGAGCCAGCCAGACCAGAGCCCCGCTCGAAGCCTGCGCCTGG
Right flanking sequence: Indices 82386 -- 82885
CTTGTGGTTCTCCGGGTGCTGGAGGTCCAAGAAGTCTTCCCAGTCGCCGCCCGGGGCGCTGGTGG
CATCCACCACGAGCAGCTCGCGTTTCAGCGGCGAGAGCCCGCGTTTGGCGGCAGCAGGGCCGCTG
GGACCGCTGCCAAAGTGGCCCAGACGGCGCTGGCGGGCCTTGCGAGGCAGCAGCGGCGCCTTTTC
CGTCTCGACGACGGGGGTTTCCTTGCGCTGCTTGACCACCTGGTGGCGTAACCGGGCGATGGTGC
GGTTTGCGTGGGCCAAGTTGGCGCGGAGGGTCTCCGCCTCCATCTTCGGGTTGTGTCCGTCGCTG
GGCGGCACCGCCTGTGGCTGGAGCTGGCGGAAGAGCTCGTCAAAGTCGAGGTCGTCGTCTTCGGT
TTCGAGCCCGGGCACCAGATCAGCCGGGGGCGCGTCCCCCGGGGTCGGGGCAGCGGCGGCGGGGG
CGGGGGGCGTCTCGGCGAGCCGCCGGTGCAACGCGTCGTTCTCGT
Found at i:82396 original size:21 final size:21
Alignment explanation
Indices: 82345--82398 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
82335 CTGGCTCCCA
*
82345 CGGTGGCTCTCCTGGCCCACC
1 CGGTGGTTCTCCTGGCCCACC
*
82366 CGGTGCTTCTCCTGGCCCACC
1 CGGTGGTTCTCCTGGCCCACC
**
82387 TTGTGGTTCTCC
1 CGGTGGTTCTCC
82399 GGGTGCTGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.04, C:0.43, G:0.26, T:0.28
Consensus pattern (21 bp):
CGGTGGTTCTCCTGGCCCACC
Left flanking sequence: Indices 81845 -- 82344
GGCCCTTGGCCCGGAGCCGCCGCTCCATCTCCTGCTCAGACACCAACTGCGCGTACTCCTCGGGC
AGGAGCACGCTGTAGCCCGCCCGCTTGGCCCGGGCGACCGCGGCGGTGTCGTCGCTGAGCTCGGC
AAACTGCTGCGCCAGAAGCACGTGGTACCCGGCCTGGGCGGCCGCCGCAAGCGCCAGCTCCACCG
ACGGCGTCTTGGCCGCCCCCGTGAGCTGCTGGTACTCGTCGTAGGGAATCATCACGAGATTGCGC
TCGCTGACGTAAGCGTCGATCTTCTTCTGGGACGCCTGGCGGCGCAACTGGTTGGTGAAGAGCGC
TGCTGCCTCTCGCAGCGCCCCGTCGTCCTCGTCGGACAGGTCCTCGACGTGCACGAACCCGGGAG
CCTCGTCTCCCCCAAACTCAAACAGGGTGTCCAGCCCCGAGCCCTCCAGCGAGCCCAGCGAGCCA
GCCAGACCAGAGCCCCGCTCGAAGCCTGCGCCTGGCTGGCTCCCA
Right flanking sequence: Indices 82399 -- 82898
GGGTGCTGGAGGTCCAAGAAGTCTTCCCAGTCGCCGCCCGGGGCGCTGGTGGCATCCACCACGAG
CAGCTCGCGTTTCAGCGGCGAGAGCCCGCGTTTGGCGGCAGCAGGGCCGCTGGGACCGCTGCCAA
AGTGGCCCAGACGGCGCTGGCGGGCCTTGCGAGGCAGCAGCGGCGCCTTTTCCGTCTCGACGACG
GGGGTTTCCTTGCGCTGCTTGACCACCTGGTGGCGTAACCGGGCGATGGTGCGGTTTGCGTGGGC
CAAGTTGGCGCGGAGGGTCTCCGCCTCCATCTTCGGGTTGTGTCCGTCGCTGGGCGGCACCGCCT
GTGGCTGGAGCTGGCGGAAGAGCTCGTCAAAGTCGAGGTCGTCGTCTTCGGTTTCGAGCCCGGGC
ACCAGATCAGCCGGGGGCGCGTCCCCCGGGGTCGGGGCAGCGGCGGCGGGGGCGGGGGGCGTCTC
GGCGAGCCGCCGGTGCAACGCGTCGTTCTCGTCGTTCAACTGGTC
Found at i:84863 original size:13 final size:13
Alignment explanation
Indices: 84840--84879 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
84830 CGGTACAGGG
84840 CCCAGCCGGAACTA
1 CCCA-CCGGAACTA
84854 CCCACCGGAACTA
1 CCCACCGGAACTA
**
84867 GTCACCGGAACTA
1 CCCACCGGAACTA
84880 ACCGTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.30, C:0.40, G:0.20, T:0.10
Consensus pattern (13 bp):
CCCACCGGAACTA
Left flanking sequence: Indices 84340 -- 84839
GGGTAAGAAGGGAGAAGGAAGACAGAGAAGGAAGAGAAAAGAAAGGATGTGGAGAAAAAGGGGTG
GTGTGGGTGGATAGACTGTTTGAGTAGGGAGTTCTGGTCAGGTTAGCCCACTTGGCTCGCTGGGA
ACAGCATGTCCAGGCGACTGTATCCCGACACGGGCTGACGCAGCGAGTGAACGGGATGAGTGGGG
AAATAAGGATGGTTCCTTGGTAGAGGTGAGGGGGTTGCGTAGTCTGTTTTTTATTTGAGTTGTTC
GGCTCTAGAAAATGTCTGTCTTTTGTGATGTCTGTCGCCTATGCTGTGTCTCCTGTGACGTGACT
GTACACGAGCTGGCGTCTGGCAAGTATACCCGTCGGCGATCTCGGCTAGCGTCTAGTGGGCAAGC
GAGCCGAGTGCGGTCCCATGGGACGTCTGCGTCAAGCGTCCGGACAATCTCGTGATTTCGACCAC
CTCCAAAATGAACGCTTGGACCCGCGGTTTATCCGCGGTACAGGG
Right flanking sequence: Indices 84880 -- 85379
ACCGTTTTCAGGTACCGTTTGATTATTTTGCGTTTATTTCTCAGCTTTGATTCCCATGTGATCGT
GCGACCAACGTTCATTTGCAGCCACGATCGGCAAAAGAAGGGCAGCAGAGAGCATGGAAAACGCG
TGATGCCGGGGGTGGGGCTGGTGGTCCCAACCGATTGGCCGTTTGTCAGCTTTCGATTGGGTCTT
TTTGCTTGGCTTTCCGTTGTCTCGCTGGCCGTCCCTGAAGGCTCGCTTGGGCCAACCGTTGGTCG
TCTCGGAACAATAGTATTGTTTTATGCCCGTTAGCCCGGAACGATCGAGTGGCAATAGGGTGCGT
TTACGACTTCTGGATCGGTAATTAAGCTTGCTTGTGATAATGTAGGGCCGTGGGGACAGGTAGAG
TCTTTTAGGCTCGGAGCTGGGAAGTAGGTTAAGAAGGCGTGCAGTCAATGAGCGGGAGAGGAGGT
TAAGAAGGCGTGCAGTTAAAGAGCTGGAGAGAAGGTTAAGAAGAC
Found at i:85342 original size:36 final size:36
Alignment explanation
Indices: 85295--85383 Score: 133
Period size: 36 Copynumber: 2.5 Consensus size: 36
85285 GCTGGGAAGT
* *
85295 AGGTTAAGAAGGCGTGCAGTCAATGAGCGGGAGAGG
1 AGGTTAAGAAGGCGTGCAGTCAAAGAGCGGGAGAGA
* *
85331 AGGTTAAGAAGGCGTGCAGTTAAAGAGCTGGAGAGA
1 AGGTTAAGAAGGCGTGCAGTCAAAGAGCGGGAGAGA
*
85367 AGGTTAAGAAGACGTGC
1 AGGTTAAGAAGGCGTGC
85384 TTCGATGGTC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.34, C:0.10, G:0.40, T:0.16
Consensus pattern (36 bp):
AGGTTAAGAAGGCGTGCAGTCAAAGAGCGGGAGAGA
Left flanking sequence: Indices 84795 -- 85294
CTCCAAAATGAACGCTTGGACCCGCGGTTTATCCGCGGTACAGGGCCCAGCCGGAACTACCCACC
GGAACTAGTCACCGGAACTAACCGTTTTCAGGTACCGTTTGATTATTTTGCGTTTATTTCTCAGC
TTTGATTCCCATGTGATCGTGCGACCAACGTTCATTTGCAGCCACGATCGGCAAAAGAAGGGCAG
CAGAGAGCATGGAAAACGCGTGATGCCGGGGGTGGGGCTGGTGGTCCCAACCGATTGGCCGTTTG
TCAGCTTTCGATTGGGTCTTTTTGCTTGGCTTTCCGTTGTCTCGCTGGCCGTCCCTGAAGGCTCG
CTTGGGCCAACCGTTGGTCGTCTCGGAACAATAGTATTGTTTTATGCCCGTTAGCCCGGAACGAT
CGAGTGGCAATAGGGTGCGTTTACGACTTCTGGATCGGTAATTAAGCTTGCTTGTGATAATGTAG
GGCCGTGGGGACAGGTAGAGTCTTTTAGGCTCGGAGCTGGGAAGT
Right flanking sequence: Indices 85384 -- 85883
TTCGATGGTCGATCGAGGTTAAACCTTGAACCAGTTTGTGTCTGATTATCCGTGGTGTCTGGCGG
TATTGTCTTGTGAATACTGGCTGCAAATTTTTGGTGCGATCGTAAAAGTGTCAGTATATGGAAAA
TCTTGTGAAAGTGTGACGAAAGGGTAGAACTGAACAAACCCCAGGGTAGCAAGAATTATAATGCT
ATTTTACAGTATTTGCATGCGTCCAAAAAACCTTGACCACACAAATGTCAATCTCATTGAATCTA
ATAATAAACACACAGTAAGCCATTCATCAACTGCAATGCCTATCAATACAATGACACCAATGCCA
TGCCATCAAATACAAAGCCATCAAATACCGTGCTATCATACCATGCCACCAACCCACCCAATCAA
CTTTCTATTCTCGGAACCTTACCAACCAAACATTCTAACCTACTAACCTTCATTTCTATTCCTTT
ATTCCTCTACGCTGTGCCCTATACTCTCCTTACACGTCCTTATAC
Found at i:87267 original size:12 final size:12
Alignment explanation
Indices: 87247--87284 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
87237 GACAGCCGTG
87247 GGGTA-GTGGGT
1 GGGTAGGTGGGT
*
87258 GGGTAGGTGGCT
1 GGGTAGGTGGGT
*
87270 GGGTGGGTGGGT
1 GGGTAGGTGGGT
87282 GGG
1 GGG
87285 CTGAGAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 5 0.22
12 18 0.78
ACGTcount: A:0.05, C:0.03, G:0.68, T:0.24
Consensus pattern (12 bp):
GGGTAGGTGGGT
Left flanking sequence: Indices 86747 -- 87246
TCGGGCTTCAAATCCCGGTAGATGATGTCCAAGTTGTGGAGGTACTCGATGGCGAGGAACACCTC
GGCCGCGTAGAACTTCGCCACCGGCGTCGGAAACCGCTGACTCTTGCGCAAGAGCGAGAAAAGCT
CCCCGCCCTCGATGTAGTCCATAATCATGAAAAGATTGTGGCAGTCCTGAAACGTGCCCCACATC
CGGATGATAAACGGGTGCTGGGCAAGCTTCAACATGCGTCGTTCGTCGTTGGTGTGCTCCACCTG
CTTCATGTTCACCACCCTCTCTTTTTTGAGGGTCTTCATGGCGTAGAACCGCCCGTTGTGCACCA
GCCGGGCCAAATGGACGCGGCCAAACAGCCCGGTGCCAAGGGTGCGGAGGATCTGGAAGTCGTTG
AGCGTGTATTTGCCCTTGGTGGTGGTGTCCCGGGATCTGTACATGGAGGGTGTCAACGGTGAAAT
TTTCGATCAAACGGCCGGGTGGGTTATACGCAGGAGACAGCCGTG
Right flanking sequence: Indices 87285 -- 87784
CTGAGAAGAAGGGGCGTTGTGTGGTGGGTGGTGGTGGGGTGATGTTGGTGACCTGCTTTTTTTGT
GGATTGGGGGGGATCTGGCGGTATAAAAGGACGCTGCTTGTTTCTTTTTTTATGTGAAATTGGCT
AGAGACAAGAGAGGTGGTTGGGTGGAGGGAAGCGAGGGAAGAGGGCGGTTGTGGTGGCTGGGTGG
GGGTTTAAGGGGTTGGGGGATGCTATAGAGATTGTTACTTGTTGTGTTGGTTAGCCCCTTATTGT
CTTTTTGTCTCATGCTATTGGTATATTTTACGGCCCAATTCGGAGGCAACCGGGCACGTGACAGG
AAGTGGTGGGTGTAGTGGGTGAAGTGGGTGGTGAATGTAGTGGGTGTGGGTGGTAGAGGATGGTA
GTATGTGTGGATGGATACGGTTGGGTAGTGTTGGTGGTGTCTTATTAATGGTCTCGTAGTGCTGC
TAGTTGAACCAGTTCATTACCCTCGTGTGGCCTAATCCCTCGCGT
Found at i:87274 original size:16 final size:16
Alignment explanation
Indices: 87253--87283 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87243 CGTGGGGTAG
87253 TGGGTGGGTAGGTGGC
1 TGGGTGGGTAGGTGGC
*
87269 TGGGTGGGTGGGTGG
1 TGGGTGGGTAGGTGG
87284 GCTGAGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.03, G:0.68, T:0.26
Consensus pattern (16 bp):
TGGGTGGGTAGGTGGC
Left flanking sequence: Indices 86753 -- 87252
TTCAAATCCCGGTAGATGATGTCCAAGTTGTGGAGGTACTCGATGGCGAGGAACACCTCGGCCGC
GTAGAACTTCGCCACCGGCGTCGGAAACCGCTGACTCTTGCGCAAGAGCGAGAAAAGCTCCCCGC
CCTCGATGTAGTCCATAATCATGAAAAGATTGTGGCAGTCCTGAAACGTGCCCCACATCCGGATG
ATAAACGGGTGCTGGGCAAGCTTCAACATGCGTCGTTCGTCGTTGGTGTGCTCCACCTGCTTCAT
GTTCACCACCCTCTCTTTTTTGAGGGTCTTCATGGCGTAGAACCGCCCGTTGTGCACCAGCCGGG
CCAAATGGACGCGGCCAAACAGCCCGGTGCCAAGGGTGCGGAGGATCTGGAAGTCGTTGAGCGTG
TATTTGCCCTTGGTGGTGGTGTCCCGGGATCTGTACATGGAGGGTGTCAACGGTGAAATTTTCGA
TCAAACGGCCGGGTGGGTTATACGCAGGAGACAGCCGTGGGGTAG
Right flanking sequence: Indices 87284 -- 87783
GCTGAGAAGAAGGGGCGTTGTGTGGTGGGTGGTGGTGGGGTGATGTTGGTGACCTGCTTTTTTTG
TGGATTGGGGGGGATCTGGCGGTATAAAAGGACGCTGCTTGTTTCTTTTTTTATGTGAAATTGGC
TAGAGACAAGAGAGGTGGTTGGGTGGAGGGAAGCGAGGGAAGAGGGCGGTTGTGGTGGCTGGGTG
GGGGTTTAAGGGGTTGGGGGATGCTATAGAGATTGTTACTTGTTGTGTTGGTTAGCCCCTTATTG
TCTTTTTGTCTCATGCTATTGGTATATTTTACGGCCCAATTCGGAGGCAACCGGGCACGTGACAG
GAAGTGGTGGGTGTAGTGGGTGAAGTGGGTGGTGAATGTAGTGGGTGTGGGTGGTAGAGGATGGT
AGTATGTGTGGATGGATACGGTTGGGTAGTGTTGGTGGTGTCTTATTAATGGTCTCGTAGTGCTG
CTAGTTGAACCAGTTCATTACCCTCGTGTGGCCTAATCCCTCGCG
Found at i:88050 original size:9 final size:9
Alignment explanation
Indices: 88036--88066 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
88026 TTCCAGCTTC
88036 TACCGTGTT
1 TACCGTGTT
*
88045 TACCGTGCT
1 TACCGTGTT
88054 TACCGTGTT
1 TACCGTGTT
88063 TACC
1 TACC
88067 AGCTTCACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (9 bp):
TACCGTGTT
Left flanking sequence: Indices 87536 -- 88035
CCTTATTGTCTTTTTGTCTCATGCTATTGGTATATTTTACGGCCCAATTCGGAGGCAACCGGGCA
CGTGACAGGAAGTGGTGGGTGTAGTGGGTGAAGTGGGTGGTGAATGTAGTGGGTGTGGGTGGTAG
AGGATGGTAGTATGTGTGGATGGATACGGTTGGGTAGTGTTGGTGGTGTCTTATTAATGGTCTCG
TAGTGCTGCTAGTTGAACCAGTTCATTACCCTCGTGTGGCCTAATCCCTCGCGTTCCCTTGCACA
GCCCTGTCAAACTGGCAGGACGTTATGCAGTGGTGGTGCCGCGTGCAACGCTTATCGGGCTCGGC
CATGTGCAGCTCGGAGCGTCGCCGTATATGCTGCCGCTTTCGGTGGTCGGGTCCACCTGCCTGGT
AACTGAGCGAAGAGACCCTGAAAAGCAATGCCGACACCGAAATAAGCTTTCGTGCCGCAGGAAGC
GGAACGGGGGCAGAGCGAGGCTGTCCACTGGTGGATTCCAGCTTC
Right flanking sequence: Indices 88067 -- 88566
AGCTTCACCGGGTTTACCAGCTTCTACTGTGTTTTGCCCACCCTATTGTTGGCTCGATCGACGAT
CACAGACCGCTCCACGCAGCCCCGCGTGTCTGCATAAGTCACCGATGCCACAGGTGGATCGACGG
GACGAGCCAGGGCCGGAACAGGCTCCGGATCCCCCGAGGGCGACCCACCGCATCGAGGTGGACCG
GTGCAGACGTCAAACGCGGGGAGTGACTGAATGTCTTTCACGGTGGGTAGGTGGGTTCGGTGGTT
TGTGGTCGGTGGTCTGGTTCGGGTGGACCTGGCTTCCGATCTCCTCTGTCTGATGTATTTTTGTC
GGGGTGGTCCCAAGCCCACCACTATCTACGCTATTGGTTGCTGGACATTTTAGCTTTCGTCGATC
CCTCTAACCCCGAAAAATATGGGCTTCCAAGCAGGCCGCGAGCTTAACCTAAAGGGAGACGCTCC
CGGGTGCCTACGGTGCCAACCATCGTGCTTGTGACCTGAAACTTT
Found at i:88090 original size:18 final size:18
Alignment explanation
Indices: 88028--88100 Score: 85
Period size: 18 Copynumber: 3.9 Consensus size: 18
88018 CTGGTGGATT
88028 CCAGCTTCTACCGTGTTTA
1 CCAGCTTC-ACCGTGTTTA
*
88047 CCGTGCTT-ACCGTGTTTA
1 CC-AGCTTCACCGTGTTTA
*
88065 CCAGCTTCACCGGGTTTA
1 CCAGCTTCACCGTGTTTA
*
88083 CCAGCTTCTACTGTGTTT
1 CCAGCTTC-ACCGTGTTT
88101 TGCCCACCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
17 4 0.09
18 29 0.63
19 9 0.20
20 4 0.09
ACGTcount: A:0.14, C:0.30, G:0.19, T:0.37
Consensus pattern (18 bp):
CCAGCTTCACCGTGTTTA
Left flanking sequence: Indices 87528 -- 88027
GGTTAGCCCCTTATTGTCTTTTTGTCTCATGCTATTGGTATATTTTACGGCCCAATTCGGAGGCA
ACCGGGCACGTGACAGGAAGTGGTGGGTGTAGTGGGTGAAGTGGGTGGTGAATGTAGTGGGTGTG
GGTGGTAGAGGATGGTAGTATGTGTGGATGGATACGGTTGGGTAGTGTTGGTGGTGTCTTATTAA
TGGTCTCGTAGTGCTGCTAGTTGAACCAGTTCATTACCCTCGTGTGGCCTAATCCCTCGCGTTCC
CTTGCACAGCCCTGTCAAACTGGCAGGACGTTATGCAGTGGTGGTGCCGCGTGCAACGCTTATCG
GGCTCGGCCATGTGCAGCTCGGAGCGTCGCCGTATATGCTGCCGCTTTCGGTGGTCGGGTCCACC
TGCCTGGTAACTGAGCGAAGAGACCCTGAAAAGCAATGCCGACACCGAAATAAGCTTTCGTGCCG
CAGGAAGCGGAACGGGGGCAGAGCGAGGCTGTCCACTGGTGGATT
Right flanking sequence: Indices 88101 -- 88600
TGCCCACCCTATTGTTGGCTCGATCGACGATCACAGACCGCTCCACGCAGCCCCGCGTGTCTGCA
TAAGTCACCGATGCCACAGGTGGATCGACGGGACGAGCCAGGGCCGGAACAGGCTCCGGATCCCC
CGAGGGCGACCCACCGCATCGAGGTGGACCGGTGCAGACGTCAAACGCGGGGAGTGACTGAATGT
CTTTCACGGTGGGTAGGTGGGTTCGGTGGTTTGTGGTCGGTGGTCTGGTTCGGGTGGACCTGGCT
TCCGATCTCCTCTGTCTGATGTATTTTTGTCGGGGTGGTCCCAAGCCCACCACTATCTACGCTAT
TGGTTGCTGGACATTTTAGCTTTCGTCGATCCCTCTAACCCCGAAAAATATGGGCTTCCAAGCAG
GCCGCGAGCTTAACCTAAAGGGAGACGCTCCCGGGTGCCTACGGTGCCAACCATCGTGCTTGTGA
CCTGAAACTTTGGGTGGAACGCCTCGGCAACAATGAAACGATGTG
Found at i:88827 original size:23 final size:23
Alignment explanation
Indices: 88783--88850 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
88773 GCGTGCAAGG
* *
88783 CGGTTCGTACTGTGTGGGGTAGGA
1 CGGTTCGAACTG-GTGGAGTAGGA
88807 CGGTTCGAACTGGTGGAGTAGGA
1 CGGTTCGAACTGGTGGAGTAGGA
* *
88830 CGG-TGGAACTGGGTGGTGTAG
1 CGGTTCGAACT-GGTGGAGTAG
88851 TAAGACGGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
22 6 0.15
23 22 0.56
24 11 0.28
ACGTcount: A:0.16, C:0.12, G:0.47, T:0.25
Consensus pattern (23 bp):
CGGTTCGAACTGGTGGAGTAGGA
Left flanking sequence: Indices 88283 -- 88782
AGTGACTGAATGTCTTTCACGGTGGGTAGGTGGGTTCGGTGGTTTGTGGTCGGTGGTCTGGTTCG
GGTGGACCTGGCTTCCGATCTCCTCTGTCTGATGTATTTTTGTCGGGGTGGTCCCAAGCCCACCA
CTATCTACGCTATTGGTTGCTGGACATTTTAGCTTTCGTCGATCCCTCTAACCCCGAAAAATATG
GGCTTCCAAGCAGGCCGCGAGCTTAACCTAAAGGGAGACGCTCCCGGGTGCCTACGGTGCCAACC
ATCGTGCTTGTGACCTGAAACTTTGGGTGGAACGCCTCGGCAACAATGAAACGATGTGTCACTTA
CAAGTCCGGTGTGCACATGCCAGCCGGATTTAAAAGGGTCTAAGATAGCGATTTAGAGTTTGACT
GGATGGCAGTCCACCGAGGTTCATAACCGGACTCGTAACGCGCTGCGGTGGAAACCGCGGCCCAG
CGGGAGCTGCTGCGGCTGTGACGGGGTTCGAACGGGCGTGCAAGG
Right flanking sequence: Indices 88851 -- 89350
TAAGACGGGTCTCGTCTTTTCAAAGAAGCTCCAAACCAAACTTGCTTTTTCTGCCTCGCTCCGGG
TCGTCTCGTCTCGTTTCGTCTCGTTTCGTGCCGTTGTGAGCTGGATCAGAGTATTTTACCACAGT
ATTTTCACCGGAAAGCCTAAACCTGTGCGTATTCCAGGTGTGGAAGCGGACACGGAAAATAATGA
ACGCAGGGAGGATGTGAGGGAAGCTTAAAGAGTGGGGGTATTTCGGTCCTCGGTTCTTCTCGCTA
TCTATTTCCGAACGGCTTGGTGGCCTCGGTGACTTGGACGCGGAGAAGCACGGGGGTAGCACGCG
AAGAAGCACGCGGAGAAGCACGAGGGATGCATGCATGCGGGCAGCTGTGGGAACGTGGGGTTAGT
CTTGGTGAGAAACCGTCTAGGTGTTCTTTACGTCTGAATATTGTTGGTTCTAGTAGGGTGAAAAA
TTTGAGGGGTCAAAGTGGGGTGGCCGTGGAGGCCGAGGGTGTGAG
Found at i:89185 original size:12 final size:12
Alignment explanation
Indices: 89168--89197 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
89158 GCACGGGGGT
89168 AGCACGCGAAGA
1 AGCACGCGAAGA
*
89180 AGCACGCGGAGA
1 AGCACGCGAAGA
89192 AGCACG
1 AGCACG
89198 AGGGATGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.27, G:0.37, T:0.00
Consensus pattern (12 bp):
AGCACGCGAAGA
Left flanking sequence: Indices 88668 -- 89167
TGACTGGATGGCAGTCCACCGAGGTTCATAACCGGACTCGTAACGCGCTGCGGTGGAAACCGCGG
CCCAGCGGGAGCTGCTGCGGCTGTGACGGGGTTCGAACGGGCGTGCAAGGCGGTTCGTACTGTGT
GGGGTAGGACGGTTCGAACTGGTGGAGTAGGACGGTGGAACTGGGTGGTGTAGTAAGACGGGTCT
CGTCTTTTCAAAGAAGCTCCAAACCAAACTTGCTTTTTCTGCCTCGCTCCGGGTCGTCTCGTCTC
GTTTCGTCTCGTTTCGTGCCGTTGTGAGCTGGATCAGAGTATTTTACCACAGTATTTTCACCGGA
AAGCCTAAACCTGTGCGTATTCCAGGTGTGGAAGCGGACACGGAAAATAATGAACGCAGGGAGGA
TGTGAGGGAAGCTTAAAGAGTGGGGGTATTTCGGTCCTCGGTTCTTCTCGCTATCTATTTCCGAA
CGGCTTGGTGGCCTCGGTGACTTGGACGCGGAGAAGCACGGGGGT
Right flanking sequence: Indices 89198 -- 89697
AGGGATGCATGCATGCGGGCAGCTGTGGGAACGTGGGGTTAGTCTTGGTGAGAAACCGTCTAGGT
GTTCTTTACGTCTGAATATTGTTGGTTCTAGTAGGGTGAAAAATTTGAGGGGTCAAAGTGGGGTG
GCCGTGGAGGCCGAGGGTGTGAGCGTGGCGTTGACCATGGTTGATACCGTGGTAGAGACCCGGTA
GAAACCTAGTGAACACCACCGCAGGCATTGCTACCCCGTTGGCTGCTTTGTTGTTGTCTCGGAAG
TAATCTTCCGGGGTCCATAACTACGCATGTCTCAACCCCGCTGTTGCATTTATTGGGTAGAGAAT
ACTCGGGGTTTGCCCGTGCCCAGGTCTATCTGAATCTTCACTTGGAATTGGACGGATTCACTTCT
CCATCGGTGGGACTAGCAGTACGACTGCATGGTCAAATTCCATCTCATCCCCCATCCTTGGGGGG
ATCATAACACCTGGGAGTTGTCGCTGATAGCCTCCACGTCCCAGT
Found at i:90495 original size:18 final size:18
Alignment explanation
Indices: 90472--90512 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
90462 ATCTCAGTTT
*
90472 GAACGACAGAGTCACCGG
1 GAACGACAGAGTCACCAG
90490 GAACGACAGAGTCACCAG
1 GAACGACAGAGTCACCAG
90508 GAACG
1 GAACG
90513 CCTTCACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.37, C:0.27, G:0.32, T:0.05
Consensus pattern (18 bp):
GAACGACAGAGTCACCAG
Left flanking sequence: Indices 89972 -- 90471
TCAGTGGGAACTATACCCAGATCAGCAAACATACATTGCGAAAATTCAGTGATCTACCATCCTCT
ATTAACTTCAAACCTATCATTTTTAGCCTCGTACTTTCACTGATCAATTTCTCTTCCTCTAGGGT
ATACTACTTGTCTTATACTCATGGAATACATAGCATAACATCTAATCGTGAGCTAACCGAAATTG
GAAGTGTCTACATCAAAGTAGAAGGATGGCCACAAGGACAACAAATCCAGAAAGCCCAGGAATAC
TGGCTCTGCCATCAACTTCCACCGTGGGTGCCTCGACAGCTCCTGCATCTATCGAACCGTCCGGG
TAGACACCACTGTCGTCTTTGGTGGTGACACCGGGTGCTGCCTGTTCACCTTCATTCCCGTTCTC
GTCTCCAAACTCGTCATTGGGTGCCTCAACGACCACCGTGCTTGTTCGTGTAACCGTAGAGACCT
CCCCGTCTTCACCAGTAGTCTCCTCGACTACCGTGATCTCAGTTT
Right flanking sequence: Indices 90513 -- 91012
CCTTCACCAGCGTCCAACGTTGTCGTGGAGAGTATTCCAACCCCAGAGACCACCACCAAGCCGAC
ACCTTGTTCGTCTGTGGTGACTACCACCACTCCGCTTTCAGTATGCACGCTGCCCTGGTCGTCTG
TGGTAGTCCACACCGTCGGGAAGGTAGTGCAATCACGGCAGTCGTCGTCTGCTTGCACCCATTCC
GACGTTGAGGTGGTGAGTTGGCCTTGTTCGTTTGTGGTCACAATAACCACCCCGGAGTCCGTCAC
TACGGAGCCCTCTTCGTCGGTGGTCCAGGTGGTGGTTATCTCCGTACACTCTGGGCACTCGGGGT
CAGTGGGTCGGGAGAACGCTGACGAAAAGGTCACTGTTTCCCCTCTGTCATTTGTGGTGACTATT
ACGACTCCAGACTCGGTAACAACGGCTCCTTCTTCGCCAGTAGTGGTCCAAGTCGAGGTGAACCG
GGTACACTCTGGACAGTCGGGGTCTGGGGGTTGCGGAAACAACGA
Found at i:92184 original size:432 final size:431
Alignment explanation
Indices: 91674--93169 Score: 1963
Period size: 432 Copynumber: 3.5 Consensus size: 431
91664 AGCTGTACTT
* * * * * *
91674 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTGGTACATTCTTCACAGGTTGGACGTGG
1 CCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAATGTAGTACACTCTTCACAGGTTGGACGTGG
* *
91739 GAACAACGACGTGGTGGTTGACAATTGGCCTTGTTCATCGGTGGTAACGACAACTACACCAGAAT
66 GAACAACGACGTGGTGGTTGACAATTGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAAT
91804 CTGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCA
131 CTGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCA
91869 CAGGTTTGACGTGGGAACAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCGGTGGTGACTAT
196 CAGGTTTGACGTGGGAACAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCGGTGGTGACTAT
* * * *
91934 GACTACTCCTGAGTCGGTAGCCGTGGAGCCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAAAG
261 GACTACTCCTGAGTCGGTAGCTGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAG
* *
91999 TTGTACACTCTTCACAGGTTTGACGTGGGAATAGAGACGTGGTGGTGGACAATTGGCCTTGGTCA
326 TTGTACACTCTTCACAGGTTTGACGTGGGAATA-AGACGTGGTGGTCGACAATTGGCCTTGCTCA
* * * ** * * * *
92064 TCGGTGGTGACTATGACTACTCCTGAGTCGGTAGCCGTGGAG
390 TCAGTGGTAACGACAACTACACCTGAATCCGTAGCGGTGGAG
* * *
92106 CCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAAAGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAATGTAGTACACTCTTCACAGGTTGGACGTGG
* * **
92171 GAACAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
66 GAACAACGACGTGGTGGTTGACAATTGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAAT
* * * ** * *
92236 CTGTTGCGGTGGAGCCATCTTCATCTGTAGTATCCCACGAAGTTGTGAATGTTGTACATTCTTCA
131 CTGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCA
* * * **
92301 CAAGTTTGACGTGGGAACAAAGACGTGGTGGTTGATAATTGGCCTTCTTCATCGGTGGTGACTAT
196 CAGGTTTGACGTGGGAACAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCGGTGGTGACTAT
* *
92366 GACTACTCCTGAGTCGGTAGCTGTAGTA-CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAC
261 GACTACTCCTGAGTCGGTAGCTGT-GGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAA
* *
92430 GTTGTACACTCTTCACAGGTTTGACGTGGGAATAAAGACGTGGTAGTCGATAATTGGCCTTGCTC
325 GTTGTACACTCTTCACAGGTTTGACGTGGGAAT-AAGACGTGGTGGTCGACAATTGGCCTTGCTC
* * *
92495 GTCAGTGGTAACGACAACTACACCAGAATCCGTTGCGGTGGAG
389 ATCAGTGGTAACGACAACTACACCTGAATCCGTAGCGGTGGAG
* *
92538 CCATCTTCATCCGTCGTATCCCAAGTGGTCGTAAATGTAGTACATTCTTCACAGGTTGGACGTGG
1 CCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAATGTAGTACACTCTTCACAGGTTGGACGTGG
*
92603 GAACAACGACGTGGTGGTTGACAACTGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAAT
66 GAACAACGACGTGGTGGTTGACAATTGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAAT
92668 CTGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCA
131 CTGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCA
* * * *
92733 CAGGTTTGACGTGGGAATAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCAGTGGTGACGAC
196 CAGGTTTGACGTGGGAACAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCGGTGGTGACTAT
* * * * * **
92798 AACTACTCCTGAGTCGGTGGCTGTAGAGCCATCTTCATCCGTTGTATCCCACGAAGTTGTGAAAG
261 GACTACTCCTGAGTCGGTAGCTGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAG
* * * * * *
92863 TTGTACATTCTTCACAGGTTGGTCTTGGGAACAACGACGTGGTGGTTGACAATTGGCCTT-CTTC
326 TTGTACACTCTTCACAGGTTTGACGTGGGAATAA-GACGTGGTGGTCGACAATTGGCCTTGC-TC
* *
92927 ATCAGTGGTAACGACAACTACACCGGAATCCGTTGCGGTGGAG
389 ATCAGTGGTAACGACAACTACACCTGAATCCGTAGCGGTGGAG
* * * ** * * * * * * *
92970 CCATCGTCGTCAGTCGTATCCCACGAAGTTGTGAATGTCGTACACTCCTCACATGTGGGACGAGG
1 CCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAATGTAGTACACTCTTCACAGGTTGGACGTGG
* * * * * * * * * * * ** *
93035 GAATAGCGACGTAGTGGTTGTCAATTGGCCTCCCTCATCGGTTGTCACAATAA-TGATGCCAGAG
66 GAACAACGACGTGGTGGTTGACAATTGGCCTTCTTCATCAGTGGTAACGACAACT-ACACCAGAA
* * * * * * * * *
93099 TCTGTTGCGGTGGAGCCATCGTCGTCAGTGGTAGCCCAAGTTGATGTGAAAGTTGTGCACTCTTC
130 TCTGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTC
93164 ACAGGT
195 ACAGGT
93170 GGGCCGAGGA
Statistics
Matches: 930, Mismatches: 128, Indels: 12
0.87 0.12 0.01
Matches are distributed among these distances:
431 5 0.01
432 922 0.99
433 3 0.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (431 bp):
CCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAATGTAGTACACTCTTCACAGGTTGGACGTGG
GAACAACGACGTGGTGGTTGACAATTGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAAT
CTGTTGCGGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCA
CAGGTTTGACGTGGGAACAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCGGTGGTGACTAT
GACTACTCCTGAGTCGGTAGCTGTGGAGCCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAG
TTGTACACTCTTCACAGGTTTGACGTGGGAATAAGACGTGGTGGTCGACAATTGGCCTTGCTCAT
CAGTGGTAACGACAACTACACCTGAATCCGTAGCGGTGGAG
Left flanking sequence: Indices 91174 -- 91673
AAGGAGCCCCGTTTTCGTCGGTGGTTACTATGATTACTCCAGAGTCAGTCGTGGTACGGCCGTCT
TCATCGGTTGTGCCCCACGTCGAGGTGAACGTCGTACACTCTGGGCACTCGGCATCGGTGGGTCT
TGGAAAGAGCGACGTAGACGTCGACAATTGGCCCTCGTCGTCGGTGGTTACTATGATGACCCCAG
AATCAGTCGCCGTACTACCGTCTTCGTCCGTAGTCGTCCACGCTGAGGTATACGACAGGCAATCC
TCACAAGTCGGGCGGGGGAATAGCGACGTGGTGGTGGTTAACTGCCCGTCGTCGTCCGTGGTTAC
AACGATGACACCAGAGTCTGTTTCAGTGCTACCGTCCTCGTCCGTGGTGACCCAGGTAGAGGTGA
AAGACGTACACTCCGCACATGTGGGGCGTGGATACACCGATGTCGTGGTAGTCAACTGACCGTCC
GGGTCTGTGGTGACTATGACTACTCCTGAGTCGGTAGCTGTACTT
Right flanking sequence: Indices 93170 -- 93669
GGGCCGAGGAAACAACGATGTGGTGGTTGTCAATTCTCCGATTTCCGTGGTAGTAACTATGATGA
CGCCAGAGTCCGTTGCGGTAGAGCCATCTTCATCAATGGTCGTCCAAGTTGACGTGAAAGATGTA
CACTCGTCGCAAGGTGGGGGAACCTCCAGCGGGACTGGCGGAAGTGGTGGACAATCTCCACAATT
ATTCGCTAACGCAGCTTCATCCGGCACGGGTCCCTCGTATATGAGCGCATTGATCATACGTCCCC
CGCCCAATTCTACCTCCCATTCTCCATACAGAAACAAGGAAAGGTCGTAACCGGGCCCAATATCA
AAAGCTCCCGCATAGGGACGATCATTATAAATCCACGTAATGCTCAAGATTGATCCCGTGTAGCT
AAAGTCTTCAATTTCACCCCATGTTGCGAATGCCATGCCTTGGCCAAAGCCTCGGACGACAATCT
CGCCAGGTTGTAATCCTTCTAGCAAAATCGCGCCCGTCGAAGCAA
Found at i:93073 original size:144 final size:144
Alignment explanation
Indices: 91674--93169 Score: 1675
Period size: 144 Copynumber: 10.4 Consensus size: 144
91664 AGCTGTACTT
* * * *
91674 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTGGTACATTCTTCACAGGTTGGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
* * *
91739 GAACAACGACGTGGTGGTTGACAATTGGCCTTGTTCATCGGTGGTAACGACAACTACACCAGAAT
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
*
91804 CTGTTGCGGTGGAG
131 CGGTTGCGGTGGAG
*
91818 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
* * * * ** * * *
91883 GAACAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCGGTGGTGACTATGACTACTCCTGAGT
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
* *
91948 CGGTAGCCGTGGAG
131 CGGTTGCGGTGGAG
* * *
91962 CCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAAAGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
* * * * * * ** * * *
92027 GAATAGAGACGTGGTGGTGGACAATTGGCCTTGGTCATCGGTGGTGACTATGACTACTCCTGAGT
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
* *
92092 CGGTAGCCGTGGAG
131 CGGTTGCGGTGGAG
* * *
92106 CCATCTTCATCAGTCGTATCCCAAGTGGTCGTAAAAGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
*
92171 GAACAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
*
92236 CTGTTGCGGTGGAG
131 CGGTTGCGGTGGAG
* * * ** * * *
92250 CCATCTTCATCTGTAGTATCCCACGAAGTTGTGAATGTTGTACATTCTTCACAAGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
* ** * * * ** * * *
92315 GAACAAAGACGTGGTGGTTGATAATTGGCCTTCTTCATCGGTGGTGACTATGACTACTCCTGAGT
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
* * *
92380 CGGTAGCTGTAGTA-
131 CGGTTGCGGT-GGAG
*
92394 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
* * * * * *
92459 GAATAAAGACGTGGTAGTCGATAATTGGCCTTGCTCGTCAGTGGTAACGACAACTACACCAGAAT
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
*
92524 CCGTTGCGGTGGAG
131 CGGTTGCGGTGGAG
* * * *
92538 CCATCTTCATCCGTCGTATCCCAAGTGGTCGT-AAATGTAGTACATTCTTCACAGGTTGGACGTG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAA-GTTGTACACTCTTCACAGGTTTGACGTG
* * **
92602 GGAACAACGACGTGGTGGTTGACAACTGGCCTTCTTCATCAGTGGTAACGACAACTACACCAGAA
65 GGAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAA
*
92667 TCTGTTGCGGTGGAG
130 TCGGTTGCGGTGGAG
*
92682 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAACGTTGTACACTCTTCACAGGTTTGACGTGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
* * * * * *
92747 GAATAAAGACGTGGTAGTTGACAATTGGCCTTGGTCATCAGTGGTGACGACAACTACTCCTGAGT
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
* * *
92812 CGGTGGCTGTAGAG
131 CGGTTGCGGTGGAG
* * ** * * * *
92826 CCATCTTCATCCGTTGTATCCCACGAAGTTGTGAAAGTTGTACATTCTTCACAGGTTGGTCTTGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
* ** *
92891 GAACAACGACGTGGTGGTTGACAATTGGCCTTCTTCATCAGTGGTAACGACAACTACACCGGAAT
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
*
92956 CCGTTGCGGTGGAG
131 CGGTTGCGGTGGAG
* * * * ** * * * * ** *
92970 CCATCGTCGTCAGTCGTATCCCACGAAGTTGTGAATGTCGTACACTCCTCACATGTGGGACGAGG
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
* ** * * *** * * * * * ** *
93035 GAATAGCGACGTAGTGGTTGTCAATTGGCCTCCCTCATCGGTTGTCACAATAA-TGATGCCAGAG
66 GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACT-ACACCAGAA
*
93099 TCTGTTGCGGTGGAG
130 TCGGTTGCGGTGGAG
* * * * * * * *
93114 CCATCGTCGTCAGTGGTAGCCCAAGTTGATGTGAAAGTTGTGCACTCTTCACAGGT
1 CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGT
93170 GGGCCGAGGA
Statistics
Matches: 1160, Mismatches: 187, Indels: 10
0.85 0.14 0.01
Matches are distributed among these distances:
143 5 0.00
144 1151 0.99
145 4 0.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (144 bp):
CCATCTTCATCCGTCGTATCCCAAGTGGTTGTGAAAGTTGTACACTCTTCACAGGTTTGACGTGG
GAACAAAGACGTGGTGGTTGACAATTGGCCTTGGTCATCAGTGGTAACGACAACTACACCAGAAT
CGGTTGCGGTGGAG
Left flanking sequence: Indices 91174 -- 91673
AAGGAGCCCCGTTTTCGTCGGTGGTTACTATGATTACTCCAGAGTCAGTCGTGGTACGGCCGTCT
TCATCGGTTGTGCCCCACGTCGAGGTGAACGTCGTACACTCTGGGCACTCGGCATCGGTGGGTCT
TGGAAAGAGCGACGTAGACGTCGACAATTGGCCCTCGTCGTCGGTGGTTACTATGATGACCCCAG
AATCAGTCGCCGTACTACCGTCTTCGTCCGTAGTCGTCCACGCTGAGGTATACGACAGGCAATCC
TCACAAGTCGGGCGGGGGAATAGCGACGTGGTGGTGGTTAACTGCCCGTCGTCGTCCGTGGTTAC
AACGATGACACCAGAGTCTGTTTCAGTGCTACCGTCCTCGTCCGTGGTGACCCAGGTAGAGGTGA
AAGACGTACACTCCGCACATGTGGGGCGTGGATACACCGATGTCGTGGTAGTCAACTGACCGTCC
GGGTCTGTGGTGACTATGACTACTCCTGAGTCGGTAGCTGTACTT
Right flanking sequence: Indices 93170 -- 93669
GGGCCGAGGAAACAACGATGTGGTGGTTGTCAATTCTCCGATTTCCGTGGTAGTAACTATGATGA
CGCCAGAGTCCGTTGCGGTAGAGCCATCTTCATCAATGGTCGTCCAAGTTGACGTGAAAGATGTA
CACTCGTCGCAAGGTGGGGGAACCTCCAGCGGGACTGGCGGAAGTGGTGGACAATCTCCACAATT
ATTCGCTAACGCAGCTTCATCCGGCACGGGTCCCTCGTATATGAGCGCATTGATCATACGTCCCC
CGCCCAATTCTACCTCCCATTCTCCATACAGAAACAAGGAAAGGTCGTAACCGGGCCCAATATCA
AAAGCTCCCGCATAGGGACGATCATTATAAATCCACGTAATGCTCAAGATTGATCCCGTGTAGCT
AAAGTCTTCAATTTCACCCCATGTTGCGAATGCCATGCCTTGGCCAAAGCCTCGGACGACAATCT
CGCCAGGTTGTAATCCTTCTAGCAAAATCGCGCCCGTCGAAGCAA
Found at i:96832 original size:12 final size:12
Alignment explanation
Indices: 96815--96870 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
96805 GCATCATCCG
96815 CTCGTCGTCGTC
1 CTCGTCGTCGTC
96827 CTCGTCGTCGTC
1 CTCGTCGTCGTC
*
96839 GC-CAG-CCTCGTC
1 -CTC-GTCGTCGTC
*
96851 CACGTCGTCGTC
1 CTCGTCGTCGTC
*
96863 GTCGTCGT
1 CTCGTCGT
96871 AGCCAAACCC
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
11 2 0.06
12 32 0.89
13 2 0.06
ACGTcount: A:0.04, C:0.41, G:0.27, T:0.29
Consensus pattern (12 bp):
CTCGTCGTCGTC
Left flanking sequence: Indices 96315 -- 96814
TGTGCGTTCATATGCACCTGTACTCGACATGAAAGCGCAAAATTACTTTCAACCAGTGACATTGA
AACATTGAGACCATAAAAAAATTCAAAAACCGCTTTCACGGGTGTAGAAAAATTCAAAAAAGCAA
GAAGAGGTCCAGCCATCAAAATCACTCAAAATTCATTTTGCCCCAGTGGTAGCTTCAGGTAAATA
ATATGTGACAGGTAGAACTATTTTTATCGATATTATCGATGCAGCCTACATCTGATACAGATGAC
GTATTTTTGCCAGCGTGGATAATATACGAAATTCGAGCGAATAATACTTGATTAATAGGACGTTT
TAAAAAATACCGTGCAGTGAAATGAATCCCATGTTTTGCAGGGTTCACGTTGGTGTTAGCAGTTG
GTTTCTGCCTCCTTTGCTTACGACTCCAATTAATGGGATAAACTAAATGCTTAGATAAGCCACGT
CTCGCGGGCCTCTTCCAACTCCTCGTTGATGCTGCGCATCATCCG
Right flanking sequence: Indices 96871 -- 97370
AGCCAAACCCTTCGCCCCCCCGGTTGACGTCCGGGCCCGGAGGCTGCATGGGTTTGATCGCCTCG
ACGGTGTGGGCGTTCACCTGGGGCGTGACGCTGGCGGACGGGGCCCGGTGGTAGAGCAAGATCTC
CATCTGGTGCTGCAACTGGCTGAGTCGCTCCACCAAGTCGTGGCAGTTGCGAATGCTAAACTTCT
TGCCGCGCTCGCGCTCGTTGAAGTAGGCGATGAGCTCGGTGACCACCTCCAAGAAGCCAAACTCC
TCGAGGTAGCGGGCCCGTTCCTCGGCCGGGGTGGCCACGCGGTCCTCGGGCGGCGGTGGTGCCGG
TCTCGGGCTGCTGGAGTGCACCAACGCCCGCGTGGGCAACGAGAACCGCGACAGCGCCAGGTACA
GCCCGTGGTCGCCCTGGCGCTGCACCGTCTCGAACAAGTTGTAGTCGGTGACGGCGGCGGTGGCG
CCCGGGTACGCCTGCTCCTTGGACACGAGGTTCATGAGAAGCCGC
Found at i:98510 original size:12 final size:12
Alignment explanation
Indices: 98489--98537 Score: 89
Period size: 12 Copynumber: 4.1 Consensus size: 12
98479 TTCCAATGAT
*
98489 ACCAGCGTTTCC
1 ACCAGAGTTTCC
98501 ACCAGAGTTTCC
1 ACCAGAGTTTCC
98513 ACCAGAGTTTCC
1 ACCAGAGTTTCC
98525 ACCAGAGTTTCC
1 ACCAGAGTTTCC
98537 A
1 A
98538 GTAGCAGTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.24
Consensus pattern (12 bp):
ACCAGAGTTTCC
Left flanking sequence: Indices 97989 -- 98488
AACGTCTGCTGGTAGCTGGGCCCGGCGTTGGCGGCGAAGATCACCGAGAGACTGGGCAAAAACGT
GTCCAGGTTCAGAATGAGCAGCTTGAACAGCAGGAACTCGGTGATGAAGTTGGCGAGCACCGCAA
GCACCACCAGCTGGTTGACCATCGCCGCGTGGGTGGCGGCGCCAAAGAACTTGAGGAGCGGGCGC
TGGGTCTCAAACACCTTGAGGAGCTCCAAGAGGTTGGTGACGAGCCCGTCGGCGCCGTCGGCCGC
GCCCATGAACGACGGGTAGGCGTTGCACTCGACAAAGAAGGTGCGGAGCGGGGTGATCAGGCGGG
AGAGCGAGCGGATGAGGTAGTAGGCGTGGGTGAAGAGCGGCAGGTCGACGATGCCGAGCATGGCT
CCGAGCGAGGCGGCGGCGGGAGAGAGAGAAGAACCAACGCCAGGGGTAAGAGTAGATCCAGTGGA
ACCAGAGTTACCAGAAATGCCAGTAGAACCAGAGTTTCCAATGAT
Right flanking sequence: Indices 98538 -- 99037
GTAGCAGTGTTACTAGCACCAGAATTGGTAGCACTAGCACCACTGGAATTACCACTCGCACTGGC
ACCACTCCCTCTCCCTCCACTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTACCACTCCCTC
CACTCTCACCACCACTCCCTCTCCCTCTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTACCA
CTCCCTCCACTCTCACCACCACTCCCTCTCCCTCTCCCTCCACCACTCGCTCTCCCCCCACCTCC
CCCCCGCCCCAGCTCCACCAACTTGTACCCCAACCGCACCTGGTTGACACAGAACAAGTGCAAGT
CCACCAAGTCAAACAACATCCGCGAGAACTGGCACTTCTCGGGCGCCAGACACAACCGGCTGCGG
TTGTCCTCGTTCAGATAGGTGTACACGCTCAAGAGCAAGAGCAAGTCGCCCCCGCTGGGGTCAAA
CTGCGGGTGCTTCTTGAAGAGGCCCACCCGGGACCAGTCGACAAA
Found at i:98625 original size:9 final size:9
Alignment explanation
Indices: 98613--98744 Score: 126
Period size: 9 Copynumber: 14.3 Consensus size: 9
98603 ACCACTCCCT
98613 CTCCCTCCA
1 CTCCCTCCA
98622 CTCCCTCCA
1 CTCCCTCCA
98631 CTCCCTCCA
1 CTCCCTCCA
*
98640 CTCCCACCA
1 CTCCCTCCA
98649 CTCGCTCTACCA
1 CTC-C-CT-CCA
98661 CTCCCTCCA
1 CTCCCTCCA
* *
98670 CTCTCACCA
1 CTCCCTCCA
*
98679 C-CACTCC-
1 CTCCCTCCA
* *
98686 CTCTC-CCT
1 CTCCCTCCA
98694 CTCCCTCCA
1 CTCCCTCCA
98703 CTCCCTCCA
1 CTCCCTCCA
*
98712 CTCCCACCA
1 CTCCCTCCA
98721 CTCGCTCTACCA
1 CTC-C-CT-CCA
98733 CTCCCTCCA
1 CTCCCTCCA
98742 CTC
1 CTC
98745 TCACCACCAC
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
7 3 0.03
8 10 0.10
9 68 0.66
10 6 0.06
11 4 0.04
12 12 0.12
ACGTcount: A:0.14, C:0.63, G:0.02, T:0.22
Consensus pattern (9 bp):
CTCCCTCCA
Left flanking sequence: Indices 98113 -- 98612
CCGCAAGCACCACCAGCTGGTTGACCATCGCCGCGTGGGTGGCGGCGCCAAAGAACTTGAGGAGC
GGGCGCTGGGTCTCAAACACCTTGAGGAGCTCCAAGAGGTTGGTGACGAGCCCGTCGGCGCCGTC
GGCCGCGCCCATGAACGACGGGTAGGCGTTGCACTCGACAAAGAAGGTGCGGAGCGGGGTGATCA
GGCGGGAGAGCGAGCGGATGAGGTAGTAGGCGTGGGTGAAGAGCGGCAGGTCGACGATGCCGAGC
ATGGCTCCGAGCGAGGCGGCGGCGGGAGAGAGAGAAGAACCAACGCCAGGGGTAAGAGTAGATCC
AGTGGAACCAGAGTTACCAGAAATGCCAGTAGAACCAGAGTTTCCAATGATACCAGCGTTTCCAC
CAGAGTTTCCACCAGAGTTTCCACCAGAGTTTCCAGTAGCAGTGTTACTAGCACCAGAATTGGTA
GCACTAGCACCACTGGAATTACCACTCGCACTGGCACCACTCCCT
Right flanking sequence: Indices 98745 -- 99244
TCACCACCACTCCCTCTCCCTCTCCCTCCACCACTCGCTCTCCCCCCACCTCCCCCCCGCCCCAG
CTCCACCAACTTGTACCCCAACCGCACCTGGTTGACACAGAACAAGTGCAAGTCCACCAAGTCAA
ACAACATCCGCGAGAACTGGCACTTCTCGGGCGCCAGACACAACCGGCTGCGGTTGTCCTCGTTC
AGATAGGTGTACACGCTCAAGAGCAAGAGCAAGTCGCCCCCGCTGGGGTCAAACTGCGGGTGCTT
CTTGAAGAGGCCCACCCGGGACCAGTCGACAAACGTGGCCGGCCCCAGCGCCGCCACCGCCGCCC
GCTTCACCAGGTACAACCCCTGGAGCAACGGGTCCGCCGCCAACCGCGCCAGCAACATCTCCACG
AGCGCCAAGTCGAGGTTGGTCTGCTTGAGCTGCACCGCCAACTGGGGCAGTCGCTTGCAGCAGTC
GCCGAGCACCCGGAACGGCAGCAAGAGGTGGCGGGGCACCGGGTG
Found at i:98662 original size:39 final size:39
Alignment explanation
Indices: 98619--98744 Score: 183
Period size: 39 Copynumber: 3.4 Consensus size: 39
98609 CCCTCTCCCT
98619 CCACTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTA
1 CCACTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTA
* *
98658 CCACTCCCTCCACT--CT-CA---CCACCACTCCCTCTC
1 CCACTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTA
*
98691 CCTCTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTA
1 CCACTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTA
98730 CCACTCCCTCCACTC
1 CCACTCCCTCCACTC
98745 TCACCACCAC
Statistics
Matches: 75, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
33 26 0.35
35 2 0.03
36 4 0.05
37 2 0.03
39 41 0.55
ACGTcount: A:0.14, C:0.63, G:0.02, T:0.21
Consensus pattern (39 bp):
CCACTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTA
Left flanking sequence: Indices 98119 -- 98618
GCACCACCAGCTGGTTGACCATCGCCGCGTGGGTGGCGGCGCCAAAGAACTTGAGGAGCGGGCGC
TGGGTCTCAAACACCTTGAGGAGCTCCAAGAGGTTGGTGACGAGCCCGTCGGCGCCGTCGGCCGC
GCCCATGAACGACGGGTAGGCGTTGCACTCGACAAAGAAGGTGCGGAGCGGGGTGATCAGGCGGG
AGAGCGAGCGGATGAGGTAGTAGGCGTGGGTGAAGAGCGGCAGGTCGACGATGCCGAGCATGGCT
CCGAGCGAGGCGGCGGCGGGAGAGAGAGAAGAACCAACGCCAGGGGTAAGAGTAGATCCAGTGGA
ACCAGAGTTACCAGAAATGCCAGTAGAACCAGAGTTTCCAATGATACCAGCGTTTCCACCAGAGT
TTCCACCAGAGTTTCCACCAGAGTTTCCAGTAGCAGTGTTACTAGCACCAGAATTGGTAGCACTA
GCACCACTGGAATTACCACTCGCACTGGCACCACTCCCTCTCCCT
Right flanking sequence: Indices 98745 -- 99244
TCACCACCACTCCCTCTCCCTCTCCCTCCACCACTCGCTCTCCCCCCACCTCCCCCCCGCCCCAG
CTCCACCAACTTGTACCCCAACCGCACCTGGTTGACACAGAACAAGTGCAAGTCCACCAAGTCAA
ACAACATCCGCGAGAACTGGCACTTCTCGGGCGCCAGACACAACCGGCTGCGGTTGTCCTCGTTC
AGATAGGTGTACACGCTCAAGAGCAAGAGCAAGTCGCCCCCGCTGGGGTCAAACTGCGGGTGCTT
CTTGAAGAGGCCCACCCGGGACCAGTCGACAAACGTGGCCGGCCCCAGCGCCGCCACCGCCGCCC
GCTTCACCAGGTACAACCCCTGGAGCAACGGGTCCGCCGCCAACCGCGCCAGCAACATCTCCACG
AGCGCCAAGTCGAGGTTGGTCTGCTTGAGCTGCACCGCCAACTGGGGCAGTCGCTTGCAGCAGTC
GCCGAGCACCCGGAACGGCAGCAAGAGGTGGCGGGGCACCGGGTG
Found at i:98663 original size:21 final size:19
Alignment explanation
Indices: 98613--98760 Score: 123
Period size: 21 Copynumber: 7.9 Consensus size: 19
98603 ACCACTCCCT
98613 CTCCCT-CCACTCCCTCCA
1 CTCCCTACCACTCCCTCCA
*
98631 CTCCCT-CCACTCCCACCA
1 CTCCCTACCACTCCCTCCA
98649 CTCGCTCTACCACTCCCTCCA
1 CTC-C-CTACCACTCCCTCCA
* *
98670 CTCTC-ACCAC-CACTCC-
1 CTCCCTACCACTCCCTCCA
* *
98686 CT--CTCCCTCTCCCTCCA
1 CTCCCTACCACTCCCTCCA
*
98703 CTCCCT-CCACTCCCACCA
1 CTCCCTACCACTCCCTCCA
98721 CTCGCTCTACCACTCCCTCCA
1 CTC-C-CTACCACTCCCTCCA
*
98742 CTCTCACCACCACTCCCTC
1 CTC-C-CTACCACTCCCTC
98761 TCCCTCTCCC
Statistics
Matches: 106, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
14 1 0.01
15 3 0.03
16 7 0.07
17 7 0.07
18 38 0.36
19 5 0.05
20 4 0.04
21 41 0.39
ACGTcount: A:0.14, C:0.63, G:0.01, T:0.22
Consensus pattern (19 bp):
CTCCCTACCACTCCCTCCA
Left flanking sequence: Indices 98113 -- 98612
CCGCAAGCACCACCAGCTGGTTGACCATCGCCGCGTGGGTGGCGGCGCCAAAGAACTTGAGGAGC
GGGCGCTGGGTCTCAAACACCTTGAGGAGCTCCAAGAGGTTGGTGACGAGCCCGTCGGCGCCGTC
GGCCGCGCCCATGAACGACGGGTAGGCGTTGCACTCGACAAAGAAGGTGCGGAGCGGGGTGATCA
GGCGGGAGAGCGAGCGGATGAGGTAGTAGGCGTGGGTGAAGAGCGGCAGGTCGACGATGCCGAGC
ATGGCTCCGAGCGAGGCGGCGGCGGGAGAGAGAGAAGAACCAACGCCAGGGGTAAGAGTAGATCC
AGTGGAACCAGAGTTACCAGAAATGCCAGTAGAACCAGAGTTTCCAATGATACCAGCGTTTCCAC
CAGAGTTTCCACCAGAGTTTCCACCAGAGTTTCCAGTAGCAGTGTTACTAGCACCAGAATTGGTA
GCACTAGCACCACTGGAATTACCACTCGCACTGGCACCACTCCCT
Right flanking sequence: Indices 98761 -- 99260
TCCCTCTCCCTCCACCACTCGCTCTCCCCCCACCTCCCCCCCGCCCCAGCTCCACCAACTTGTAC
CCCAACCGCACCTGGTTGACACAGAACAAGTGCAAGTCCACCAAGTCAAACAACATCCGCGAGAA
CTGGCACTTCTCGGGCGCCAGACACAACCGGCTGCGGTTGTCCTCGTTCAGATAGGTGTACACGC
TCAAGAGCAAGAGCAAGTCGCCCCCGCTGGGGTCAAACTGCGGGTGCTTCTTGAAGAGGCCCACC
CGGGACCAGTCGACAAACGTGGCCGGCCCCAGCGCCGCCACCGCCGCCCGCTTCACCAGGTACAA
CCCCTGGAGCAACGGGTCCGCCGCCAACCGCGCCAGCAACATCTCCACGAGCGCCAAGTCGAGGT
TGGTCTGCTTGAGCTGCACCGCCAACTGGGGCAGTCGCTTGCAGCAGTCGCCGAGCACCCGGAAC
GGCAGCAAGAGGTGGCGGGGCACCGGGTGCACCAGCCGCATGAGG
Found at i:98664 original size:30 final size:27
Alignment explanation
Indices: 98602--98760 Score: 117
Period size: 30 Copynumber: 5.4 Consensus size: 27
98592 CTCGCACTGG
98602 CACCACTCCCT---CTCCCTCCACTCC
1 CACCACTCCCTCCACTCCCTCCACTCC
* *
98626 CTCCACTCCCTCCACTCCCACCACTCGC
1 CACCACTCCCTCCACTCCCTCCACTC-C
*
98654 TCTACCACTCCCTCCACTCTCACCACCACTCCC
1 -C-ACCACTCCCTCCA--CTC-CCTCCACT-CC
* *
98687 TCTCCCTCTCCCTCCACTCCCTCCACTCC
1 -C-ACCACTCCCTCCACTCCCTCCACTCC
98716 CACCACTCGCTCTACCACTCCCTCCACTCTCAC
1 CACCACTC-C-CT-CCACTCCCTCCA--CTC-C
98749 CACCACTCCCTC
1 CACCACTCCCTC
98761 TCCCTCTCCC
Statistics
Matches: 111, Mismatches: 8, Indels: 26
0.77 0.06 0.18
Matches are distributed among these distances:
24 10 0.09
27 16 0.14
28 3 0.03
29 5 0.05
30 32 0.29
31 5 0.05
32 7 0.06
33 32 0.29
34 1 0.01
ACGTcount: A:0.14, C:0.63, G:0.01, T:0.21
Consensus pattern (27 bp):
CACCACTCCCTCCACTCCCTCCACTCC
Left flanking sequence: Indices 98102 -- 98601
GTTGGCGAGCACCGCAAGCACCACCAGCTGGTTGACCATCGCCGCGTGGGTGGCGGCGCCAAAGA
ACTTGAGGAGCGGGCGCTGGGTCTCAAACACCTTGAGGAGCTCCAAGAGGTTGGTGACGAGCCCG
TCGGCGCCGTCGGCCGCGCCCATGAACGACGGGTAGGCGTTGCACTCGACAAAGAAGGTGCGGAG
CGGGGTGATCAGGCGGGAGAGCGAGCGGATGAGGTAGTAGGCGTGGGTGAAGAGCGGCAGGTCGA
CGATGCCGAGCATGGCTCCGAGCGAGGCGGCGGCGGGAGAGAGAGAAGAACCAACGCCAGGGGTA
AGAGTAGATCCAGTGGAACCAGAGTTACCAGAAATGCCAGTAGAACCAGAGTTTCCAATGATACC
AGCGTTTCCACCAGAGTTTCCACCAGAGTTTCCACCAGAGTTTCCAGTAGCAGTGTTACTAGCAC
CAGAATTGGTAGCACTAGCACCACTGGAATTACCACTCGCACTGG
Right flanking sequence: Indices 98761 -- 99260
TCCCTCTCCCTCCACCACTCGCTCTCCCCCCACCTCCCCCCCGCCCCAGCTCCACCAACTTGTAC
CCCAACCGCACCTGGTTGACACAGAACAAGTGCAAGTCCACCAAGTCAAACAACATCCGCGAGAA
CTGGCACTTCTCGGGCGCCAGACACAACCGGCTGCGGTTGTCCTCGTTCAGATAGGTGTACACGC
TCAAGAGCAAGAGCAAGTCGCCCCCGCTGGGGTCAAACTGCGGGTGCTTCTTGAAGAGGCCCACC
CGGGACCAGTCGACAAACGTGGCCGGCCCCAGCGCCGCCACCGCCGCCCGCTTCACCAGGTACAA
CCCCTGGAGCAACGGGTCCGCCGCCAACCGCGCCAGCAACATCTCCACGAGCGCCAAGTCGAGGT
TGGTCTGCTTGAGCTGCACCGCCAACTGGGGCAGTCGCTTGCAGCAGTCGCCGAGCACCCGGAAC
GGCAGCAAGAGGTGGCGGGGCACCGGGTGCACCAGCCGCATGAGG
Found at i:98770 original size:33 final size:33
Alignment explanation
Indices: 98700--98775 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
98690 CCCTCTCCCT
*
98700 CCACTCCCTCCA--CTC-CCACCACTCGCTCTA
1 CCACTCCCTCCACTCTCACCACCACTCCCTCTA
*
98730 CCACTCCCTCCACTCTCACCACCACTCCCTCTC
1 CCACTCCCTCCACTCTCACCACCACTCCCTCTA
*
98763 CCTCTCCCTCCAC
1 CCACTCCCTCCAC
98776 CACTCGCTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
30 12 0.30
32 3 0.08
33 25 0.62
ACGTcount: A:0.14, C:0.63, G:0.01, T:0.21
Consensus pattern (33 bp):
CCACTCCCTCCACTCTCACCACCACTCCCTCTA
Left flanking sequence: Indices 98200 -- 98699
TGAGGAGCTCCAAGAGGTTGGTGACGAGCCCGTCGGCGCCGTCGGCCGCGCCCATGAACGACGGG
TAGGCGTTGCACTCGACAAAGAAGGTGCGGAGCGGGGTGATCAGGCGGGAGAGCGAGCGGATGAG
GTAGTAGGCGTGGGTGAAGAGCGGCAGGTCGACGATGCCGAGCATGGCTCCGAGCGAGGCGGCGG
CGGGAGAGAGAGAAGAACCAACGCCAGGGGTAAGAGTAGATCCAGTGGAACCAGAGTTACCAGAA
ATGCCAGTAGAACCAGAGTTTCCAATGATACCAGCGTTTCCACCAGAGTTTCCACCAGAGTTTCC
ACCAGAGTTTCCAGTAGCAGTGTTACTAGCACCAGAATTGGTAGCACTAGCACCACTGGAATTAC
CACTCGCACTGGCACCACTCCCTCTCCCTCCACTCCCTCCACTCCCTCCACTCCCACCACTCGCT
CTACCACTCCCTCCACTCTCACCACCACTCCCTCTCCCTCTCCCT
Right flanking sequence: Indices 98776 -- 99275
CACTCGCTCTCCCCCCACCTCCCCCCCGCCCCAGCTCCACCAACTTGTACCCCAACCGCACCTGG
TTGACACAGAACAAGTGCAAGTCCACCAAGTCAAACAACATCCGCGAGAACTGGCACTTCTCGGG
CGCCAGACACAACCGGCTGCGGTTGTCCTCGTTCAGATAGGTGTACACGCTCAAGAGCAAGAGCA
AGTCGCCCCCGCTGGGGTCAAACTGCGGGTGCTTCTTGAAGAGGCCCACCCGGGACCAGTCGACA
AACGTGGCCGGCCCCAGCGCCGCCACCGCCGCCCGCTTCACCAGGTACAACCCCTGGAGCAACGG
GTCCGCCGCCAACCGCGCCAGCAACATCTCCACGAGCGCCAAGTCGAGGTTGGTCTGCTTGAGCT
GCACCGCCAACTGGGGCAGTCGCTTGCAGCAGTCGCCGAGCACCCGGAACGGCAGCAAGAGGTGG
CGGGGCACCGGGTGCACCAGCCGCATGAGGGTGACGAGCGTGGGG
Found at i:98788 original size:72 final size:72
Alignment explanation
Indices: 98602--98775 Score: 321
Period size: 72 Copynumber: 2.4 Consensus size: 72
98592 CTCGCACTGG
98602 CACCACTCCCTCTCCCTCCACTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTACCACTCCCT
1 CACCACTCCCTCTCCCT---CTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTACCACTCCCT
98667 CCACTCTCAC
63 CCACTCTCAC
98677 CACCACTCCCTCTCCCTCTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTACCACTCCCTCCA
1 CACCACTCCCTCTCCCTCTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTACCACTCCCTCCA
98742 CTCTCAC
66 CTCTCAC
98749 CACCACTCCCTCTCCCTCTCCCTCCAC
1 CACCACTCCCTCTCCCTCTCCCTCCAC
98776 CACTCGCTCT
Statistics
Matches: 99, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
72 82 0.83
75 17 0.17
ACGTcount: A:0.14, C:0.63, G:0.01, T:0.22
Consensus pattern (72 bp):
CACCACTCCCTCTCCCTCTCCCTCCACTCCCTCCACTCCCACCACTCGCTCTACCACTCCCTCCA
CTCTCAC
Left flanking sequence: Indices 98102 -- 98601
GTTGGCGAGCACCGCAAGCACCACCAGCTGGTTGACCATCGCCGCGTGGGTGGCGGCGCCAAAGA
ACTTGAGGAGCGGGCGCTGGGTCTCAAACACCTTGAGGAGCTCCAAGAGGTTGGTGACGAGCCCG
TCGGCGCCGTCGGCCGCGCCCATGAACGACGGGTAGGCGTTGCACTCGACAAAGAAGGTGCGGAG
CGGGGTGATCAGGCGGGAGAGCGAGCGGATGAGGTAGTAGGCGTGGGTGAAGAGCGGCAGGTCGA
CGATGCCGAGCATGGCTCCGAGCGAGGCGGCGGCGGGAGAGAGAGAAGAACCAACGCCAGGGGTA
AGAGTAGATCCAGTGGAACCAGAGTTACCAGAAATGCCAGTAGAACCAGAGTTTCCAATGATACC
AGCGTTTCCACCAGAGTTTCCACCAGAGTTTCCACCAGAGTTTCCAGTAGCAGTGTTACTAGCAC
CAGAATTGGTAGCACTAGCACCACTGGAATTACCACTCGCACTGG
Right flanking sequence: Indices 98776 -- 99275
CACTCGCTCTCCCCCCACCTCCCCCCCGCCCCAGCTCCACCAACTTGTACCCCAACCGCACCTGG
TTGACACAGAACAAGTGCAAGTCCACCAAGTCAAACAACATCCGCGAGAACTGGCACTTCTCGGG
CGCCAGACACAACCGGCTGCGGTTGTCCTCGTTCAGATAGGTGTACACGCTCAAGAGCAAGAGCA
AGTCGCCCCCGCTGGGGTCAAACTGCGGGTGCTTCTTGAAGAGGCCCACCCGGGACCAGTCGACA
AACGTGGCCGGCCCCAGCGCCGCCACCGCCGCCCGCTTCACCAGGTACAACCCCTGGAGCAACGG
GTCCGCCGCCAACCGCGCCAGCAACATCTCCACGAGCGCCAAGTCGAGGTTGGTCTGCTTGAGCT
GCACCGCCAACTGGGGCAGTCGCTTGCAGCAGTCGCCGAGCACCCGGAACGGCAGCAAGAGGTGG
CGGGGCACCGGGTGCACCAGCCGCATGAGGGTGACGAGCGTGGGG
Found at i:99834 original size:15 final size:15
Alignment explanation
Indices: 99754--99828 Score: 114
Period size: 15 Copynumber: 5.0 Consensus size: 15
99744 CCAGGTGTGT
* *
99754 TGTTGGTACCTTGGG
1 TGTTGCTACCGTGGG
99769 TGTTGCTACCGTGGG
1 TGTTGCTACCGTGGG
99784 TGTTGCTACCGTGGG
1 TGTTGCTACCGTGGG
* *
99799 TGTTGCCACCGTAGG
1 TGTTGCTACCGTGGG
99814 TGTTGCTACCGTGGG
1 TGTTGCTACCGTGGG
99829 CATTGCCGTC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 54 1.00
ACGTcount: A:0.08, C:0.20, G:0.39, T:0.33
Consensus pattern (15 bp):
TGTTGCTACCGTGGG
Left flanking sequence: Indices 99254 -- 99753
CATGAGGGTGACGAGCGTGGGGAACAACGGCTCCACCTCGGCCGGGGCGGCGGCGGCGACGGCGT
TGACGGCGGCGACGGCGAGCTGGGGGTGGCTCAGGCGGCACCACCGGAGCACCCGGCGGAGGGTG
GCGGGGGGGAGGTGCGGGTGCTGTGCGGCGCCGGCGAGGTGCACCTGGCACCACGCGGTGGCGAG
GGCCGCGGCGTCGGCGGCGGAGGAGGCGCGTGGGAGCGCCGCGGTGAGGGCGGCAACCACGGGGC
CCCACGCGGGGTCGGGGCCCGCCTCCACGGTGATGGGGACGAGCGCGAGCGCACGGAGGCTGGGG
GAGGGGCCGGAGGGGGAGGAGGAGGAGGAGGAGGAAGCAAAGTCGGAAGCAAAGTCAGAGGTGTA
CTCAGAGACACCAAAGTCGGAGGCAGTGATGTCGGAGGTGGGGAAATCTGACGAATTGGACGAGT
TGGTGTATGAGTTGGTGGAGGCAAAGGCGGTGTGTCCAGGTGTGT
Right flanking sequence: Indices 99829 -- 100328
CATTGCCGTCACTGTGTGCGCTGTGTGCACTAGCACCGTGTGCACCGCGTGCCTGTCGATCGCTC
CACGCCGCCACCAGGTGCTCGATAAACCCAAGCAACGCCGGGAGGTGCCGCCCCACGGGCAACCG
CGCGTGGTTGGCCAAGAGCACCAAGATGTCCACGCTGTAGTTGACAAACTGCACCACGTCCACCG
CACCGGGGTGCTCCGCGAGTGCCGGTGCCACCGCGAGCCCCTCGATCACCAGCGGCACCACCCCG
AAAAAAGGGGCGAGCGGCGCCGGCAGCGCTGCCAGCAGCGAGTTGAGGAGGAGGGTGGTGACCAC
GAGGAGGGACGCCAAGCGCGCCGCGGCGTCGGGCGCCGGGGGCCGGTGCAGCCGCGCCGCCGCCG
TCACCTCGCCGAGGGTGGCGGTGACCAGGGCGATGATCTGGCGGGTGGTGGCGGTGTCGGCGACC
ACGGTGTGTTTGAGGTCCTTGTTGCCGATGAGATCGACGCGGAGC
Found at i:99835 original size:30 final size:30
Alignment explanation
Indices: 99771--99835 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
99761 ACCTTGGGTG
* * **
99771 TTGCTACCGTGGGTGTTGCTACCGTGGGTG
1 TTGCCACCGTAGGTGTTGCTACCGTGGGCA
99801 TTGCCACCGTAGGTGTTGCTACCGTGGGCA
1 TTGCCACCGTAGGTGTTGCTACCGTGGGCA
99831 TTGCC
1 TTGCC
99836 GTCACTGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.09, C:0.25, G:0.35, T:0.31
Consensus pattern (30 bp):
TTGCCACCGTAGGTGTTGCTACCGTGGGCA
Left flanking sequence: Indices 99271 -- 99770
TGGGGAACAACGGCTCCACCTCGGCCGGGGCGGCGGCGGCGACGGCGTTGACGGCGGCGACGGCG
AGCTGGGGGTGGCTCAGGCGGCACCACCGGAGCACCCGGCGGAGGGTGGCGGGGGGGAGGTGCGG
GTGCTGTGCGGCGCCGGCGAGGTGCACCTGGCACCACGCGGTGGCGAGGGCCGCGGCGTCGGCGG
CGGAGGAGGCGCGTGGGAGCGCCGCGGTGAGGGCGGCAACCACGGGGCCCCACGCGGGGTCGGGG
CCCGCCTCCACGGTGATGGGGACGAGCGCGAGCGCACGGAGGCTGGGGGAGGGGCCGGAGGGGGA
GGAGGAGGAGGAGGAGGAAGCAAAGTCGGAAGCAAAGTCAGAGGTGTACTCAGAGACACCAAAGT
CGGAGGCAGTGATGTCGGAGGTGGGGAAATCTGACGAATTGGACGAGTTGGTGTATGAGTTGGTG
GAGGCAAAGGCGGTGTGTCCAGGTGTGTTGTTGGTACCTTGGGTG
Right flanking sequence: Indices 99836 -- 100335
GTCACTGTGTGCGCTGTGTGCACTAGCACCGTGTGCACCGCGTGCCTGTCGATCGCTCCACGCCG
CCACCAGGTGCTCGATAAACCCAAGCAACGCCGGGAGGTGCCGCCCCACGGGCAACCGCGCGTGG
TTGGCCAAGAGCACCAAGATGTCCACGCTGTAGTTGACAAACTGCACCACGTCCACCGCACCGGG
GTGCTCCGCGAGTGCCGGTGCCACCGCGAGCCCCTCGATCACCAGCGGCACCACCCCGAAAAAAG
GGGCGAGCGGCGCCGGCAGCGCTGCCAGCAGCGAGTTGAGGAGGAGGGTGGTGACCACGAGGAGG
GACGCCAAGCGCGCCGCGGCGTCGGGCGCCGGGGGCCGGTGCAGCCGCGCCGCCGCCGTCACCTC
GCCGAGGGTGGCGGTGACCAGGGCGATGATCTGGCGGGTGGTGGCGGTGTCGGCGACCACGGTGT
GTTTGAGGTCCTTGTTGCCGATGAGATCGACGCGGAGCTGGGCGA
Found at i:100446 original size:7 final size:7
Alignment explanation
Indices: 100434--100474 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
100424 GGGTGGGGTG
100434 GGGCGGT
1 GGGCGGT
100441 GGGCGGT
1 GGGCGGT
100448 GGGCGGT
1 GGGCGGT
100455 GGGCGGT
1 GGGCGGT
100462 GGGCGGT
1 GGGCGGT
100469 GGGCGG
1 GGGCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.00, C:0.15, G:0.73, T:0.12
Consensus pattern (7 bp):
GGGCGGT
Left flanking sequence: Indices 99934 -- 100433
GGAGGTGCCGCCCCACGGGCAACCGCGCGTGGTTGGCCAAGAGCACCAAGATGTCCACGCTGTAG
TTGACAAACTGCACCACGTCCACCGCACCGGGGTGCTCCGCGAGTGCCGGTGCCACCGCGAGCCC
CTCGATCACCAGCGGCACCACCCCGAAAAAAGGGGCGAGCGGCGCCGGCAGCGCTGCCAGCAGCG
AGTTGAGGAGGAGGGTGGTGACCACGAGGAGGGACGCCAAGCGCGCCGCGGCGTCGGGCGCCGGG
GGCCGGTGCAGCCGCGCCGCCGCCGTCACCTCGCCGAGGGTGGCGGTGACCAGGGCGATGATCTG
GCGGGTGGTGGCGGTGTCGGCGACCACGGTGTGTTTGAGGTCCTTGTTGCCGATGAGATCGACGC
GGAGCTGGGCGAGGGTGTCCGCCAGTAACGTCTCCATGGCGTGGTCTGGTGGTTAGCAAGGTGTG
GTGTAGTGGCACCGGTGCGGGCCGTATGCAGGGGAGGGTGGGGTG
Right flanking sequence: None
Done.