sallet_2.scaffold.fasta.s133.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold8
Parameters: 2 7 7 80 10 50 500
Length:  686944

Tables:   1   2   3   4   

This is table  1  of  4  ( 424 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49--1118	204	5.1	204	88	6	1541	17	32	24	25	1.97
318--1118	222	3.7	222	88	7	1300	17	33	25	24	1.96
114--1118	426	2.4	426	97	0	1913	17	32	24	24	1.97
1972--2501	144	3.7	144	97	0	979	17	35	24	22	1.95
5963--6006	18	2.4	18	88	0	61	38	34	2	25	1.68
7408--7452	9	5.1	9	78	5	56	20	13	35	31	1.91
7408--7451	17	2.5	18	92	3	72	18	13	36	31	1.90
9378--9405	9	3.1	9	100	0	56	0	35	21	42	1.53
23428--23459	9	3.6	9	95	0	55	3	46	18	31	1.65
23900--23967	18	3.8	18	82	0	82	8	20	44	26	1.81
37797--37844	5	9.6	5	84	8	53	0	62	0	37	0.95
37989--38041	21	2.5	21	75	6	54	9	30	33	26	1.88
39860--39905	20	2.3	20	92	0	74	28	39	17	15	1.90
43718--43781	15	4.3	15	90	5	94	31	4	48	15	1.66
43718--43789	31	2.3	31	90	0	108	33	4	47	15	1.64
48326--48380	16	3.5	16	74	16	53	34	43	1	20	1.62
48326--48367	8	5.2	8	77	11	50	35	42	0	21	1.53
49306--49355	21	2.4	22	90	10	86	18	44	4	34	1.68
49306--49369	21	3.2	20	85	10	78	15	43	3	37	1.63
50219--50269	17	3.0	17	88	0	75	17	29	15	37	1.91
50316--50351	11	3.3	11	92	0	63	22	30	0	47	1.52
51652--51700	15	3.1	15	91	8	71	24	36	36	2	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51645--51708	18	3.7	18	85	12	98	21	42	34	1	1.63
51746--51770	12	2.1	12	100	0	50	8	68	16	8	1.38
51967--52106	66	2.1	66	100	0	280	18	30	40	10	1.85
52625--52650	13	2.0	13	100	0	52	15	15	69	0	1.20
52729--52807	21	3.8	21	86	6	88	0	56	21	21	1.42
53406--53464	9	6.1	9	79	13	64	32	33	28	5	1.79
53406--53473	21	3.4	21	88	6	88	32	35	27	4	1.77
53476--53510	15	2.3	15	95	0	61	20	51	25	2	1.61
53540--53581	12	3.5	12	96	0	75	19	45	35	0	1.50
54366--54428	10	5.9	10	80	17	65	31	0	42	25	1.55
54366--54404	19	2.1	19	95	0	69	30	0	43	25	1.55
54392--54428	13	2.9	13	92	4	58	32	0	40	27	1.57
54769--54874	54	2.0	53	88	1	158	33	32	19	14	1.92
55522--55587	9	7.3	9	89	0	87	27	48	0	24	1.51
55570--55614	15	3.0	15	96	0	81	17	46	2	33	1.61
56239--56267	12	2.5	12	94	5	51	55	0	37	6	1.27
56220--56581	45	7.6	45	71	16	144	47	3	32	16	1.62
56284--56581	15	18.7	15	72	16	135	47	3	32	16	1.62
56302--56359	14	3.9	14	74	12	62	46	1	34	17	1.58
56387--56481	18	5.6	18	77	13	94	50	1	32	15	1.51
56492--56564	29	2.5	29	84	10	87	47	4	34	13	1.62
56546--56630	44	2.0	43	86	6	118	49	4	29	16	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57578--57619	10	4.2	10	96	0	75	40	38	11	9	1.75
57614--57662	14	3.6	14	88	5	73	55	26	2	16	1.52
58866--58903	18	2.1	18	95	0	67	18	28	44	7	1.78
59201--59227	9	3.0	9	100	0	54	11	44	33	11	1.75
59675--59736	10	5.9	11	94	5	103	0	0	66	33	0.92
59783--59807	12	2.1	12	100	0	50	0	16	68	16	1.22
59898--59949	11	4.9	10	83	6	59	3	9	36	50	1.54
59898--59949	21	2.4	21	78	12	61	3	9	36	50	1.54
60113--60166	15	3.9	14	78	11	67	44	0	40	14	1.46
60621--60653	16	2.1	16	88	11	50	36	15	24	24	1.93
60897--60948	17	3.1	17	85	0	77	46	17	7	28	1.75
63666--63695	15	2.1	14	93	6	51	36	13	33	16	1.88
64341--64370	15	2.0	15	100	0	60	46	33	13	6	1.69
64991--65055	11	5.9	11	96	0	121	29	44	26	0	1.54
65398--65453	18	3.0	18	75	21	53	7	5	66	21	1.37
65569--65611	20	2.2	19	88	12	61	32	0	53	13	1.41
65569--65630	21	3.1	21	84	6	67	32	1	53	12	1.49
66445--66488	9	4.9	9	86	8	63	38	54	0	6	1.27
66570--66620	13	3.9	13	100	0	102	21	62	0	15	1.32
67625--67661	12	3.1	12	88	0	56	27	16	56	0	1.40
67668--67749	9	10.1	9	74	21	83	30	29	39	1	1.65
67668--67745	15	5.0	15	90	4	111	30	28	39	1	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67668--67730	24	2.6	25	73	21	71	31	28	38	1	1.67
67816--67857	15	2.8	15	100	0	84	30	42	21	4	1.73
68311--68345	18	1.9	18	88	0	52	5	34	57	2	1.37
68351--68380	12	2.5	12	94	0	51	10	36	43	10	1.72
68448--68488	21	2.0	21	90	0	64	4	24	58	12	1.53
68694--68738	21	2.2	20	84	11	56	6	24	64	4	1.37
69172--69196	12	2.1	12	100	0	50	16	8	60	16	1.58
69196--69230	16	2.2	16	100	0	70	17	0	71	11	1.14
69311--69350	9	4.3	9	84	6	53	12	7	47	32	1.69
69480--69554	11	6.9	11	86	3	107	6	16	28	49	1.70
69471--69554	33	2.6	32	84	3	105	7	14	27	51	1.68
69564--69639	13	5.5	13	73	22	66	21	10	22	46	1.81
69564--69640	14	5.6	13	80	11	91	20	10	22	46	1.80
69561--69656	28	3.4	28	94	0	156	20	10	22	45	1.81
69780--69823	20	2.3	19	84	4	52	25	43	4	27	1.74
69833--69888	16	3.4	16	90	2	85	12	48	7	32	1.68
69938--69979	20	2.1	20	86	0	57	2	33	2	61	1.21
69902--69978	7	10.6	7	73	22	61	1	35	1	62	1.12
70664--70693	13	2.3	13	94	0	51	16	0	33	50	1.46
70757--70806	25	2.0	25	84	7	66	24	4	18	54	1.61
70863--70889	10	2.7	10	100	0	54	0	22	44	33	1.53
71001--71035	15	2.3	15	95	0	61	17	51	11	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72041--72104	27	2.3	28	89	8	103	40	10	29	18	1.85
72068--72171	31	3.5	31	80	12	103	37	7	35	19	1.80
72153--72182	13	2.3	13	100	0	60	46	13	33	6	1.69
72122--72211	44	2.0	43	85	8	119	36	10	36	16	1.82
72170--72277	31	3.5	31	88	0	153	30	13	36	19	1.91
77293--77356	24	2.8	23	77	15	62	42	6	50	1	1.37
77351--77510	9	18.8	9	68	15	83	48	1	40	9	1.46
77373--77436	15	4.3	15	95	0	110	50	0	42	7	1.31
77373--77473	15	6.7	15	82	12	93	49	2	40	6	1.45
77907--77944	18	2.1	18	95	0	67	28	44	15	10	1.80
80776--80839	20	3.0	21	86	6	94	39	9	37	14	1.78
80963--81024	12	5.2	12	74	3	54	38	37	19	4	1.73
81027--81053	14	1.9	14	100	0	54	29	29	22	18	1.97
81498--81526	13	2.1	14	93	6	51	24	37	10	27	1.88
85020--85044	12	2.1	12	100	0	50	24	16	16	44	1.86
88713--88795	21	4.0	21	98	0	157	33	14	32	19	1.92
89000--89057	19	3.0	19	85	5	71	32	6	24	36	1.82
89010--89061	20	2.7	20	90	3	79	34	5	23	36	1.79
91456--91508	19	2.5	21	79	17	65	30	56	0	13	1.37
91473--91516	19	2.3	19	88	0	70	31	52	0	15	1.44
91642--91680	9	4.3	9	96	0	69	2	43	20	33	1.65
92860--92890	13	2.4	13	100	0	62	32	12	38	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92968--93009	10	4.2	10	87	0	66	33	9	16	40	1.81
93031--93082	10	5.1	10	79	9	52	26	19	11	42	1.85
93625--93661	16	2.3	16	85	0	56	45	45	8	0	1.32
94459--94485	14	1.9	14	100	0	54	25	29	37	7	1.83
94526--94587	33	1.9	33	93	3	108	12	25	41	19	1.87
94875--94947	20	3.8	20	81	3	87	4	31	24	39	1.74
95114--95149	13	2.8	13	91	8	56	30	52	0	16	1.44
95900--95991	21	4.5	21	89	8	145	3	54	15	27	1.56
95900--95997	39	2.4	41	89	6	146	4	54	14	27	1.58
97855--97894	18	2.3	18	91	4	64	10	5	55	30	1.54

Tables:   1   2   3   4