Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold8
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 686944
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 4
Found at i:351 original size:204 final size:204
Alignment explanation
Indices: 49--1118 Score: 1541
Period size: 204 Copynumber: 5.1 Consensus size: 204
39 GCAAGGGTCG
* * * *
49 TTGACCACCTCCACTTCGGCTTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
1 TTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
*
114 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGAATGTACTGAGTACACCACCACCTGGA
66 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
179 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
131 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
*
244 GACGGATCT
196 GACGGATCC
*
253 TTGACCACCTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
1 TTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
*
318 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACATCACCACCTGGA
66 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
383 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
131 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
448 GACGGATCC
196 GACGGATCC
* * *
457 TTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTC-GCTGGAGTCCCTGTCTG
1 TTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCTGAGTCGTCTTC-GGA------GACT-
* * * *
521 CTGCTTCTCCCCAGGGCGAGCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACT
58 -T-CTTCT---------GTGCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACT
*
586 GAGTACACCACCACCTGGACCACCACTGACGAGAACGGTAACCCCGAGACTGGCTCTGGTATTGT
112 GAGTACACCACCACCTGGACCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGT
*
651 TGATGTCACCACGGACTCCGACGGATCT
177 TGATGTCACCACGGACTCCGACGGATCC
*
679 TTGACCACCTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
1 TTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
744 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
66 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
*
809 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGGCTCC
131 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
874 GACGGATCC
196 GACGGATCC
* * *
883 TTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTC-GCTGGAGTCCCTGTCTG
1 TTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCTGAGTCGTCTTC-GGA------GACT-
* * * *
947 CTGCTTCCCCTCAGGGCGAGCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACT
58 -T-CTT---CT------GTGCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACT
1012 GAGTACACCACCACCTGGACCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGT
112 GAGTACACCACCACCTGGACCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGT
1077 TGATGTCACCACGGACTCCGACGGATCC
177 TGATGTCACCACGGACTCCGACGGATCC
*
1105 TTGACCACTTCGAC
1 TTGACCACCTCGAC
1119 ATCGCAATTC
Statistics
Matches: 787, Mismatches: 40, Indels: 60
0.89 0.05 0.07
Matches are distributed among these distances:
203 2 0.00
204 426 0.54
210 6 0.01
212 2 0.00
213 13 0.02
214 1 0.00
216 5 0.01
222 331 0.42
223 1 0.00
ACGTcount: A:0.17, C:0.33, G:0.25, T:0.25
Consensus pattern (204 bp):
TTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
GACGGATCC
Left flanking sequence: Indices 1 -- 48
GAGACTGACTCGGGTGTCGTTGCGGTGACCACTGACTCGCAAGGGTCG
Right flanking sequence: Indices 1119 -- 1618
ATCGCAATTCACTCAGTCTGCTCCCACAGGCACTGTTGAAGCTCCTACTGGCAACGCCCCTCTGG
GTTTAGATTCTACAAGCGAATCTCACAGCATTTGCCCAGAGTGCACCCACTATACTACCACGTGG
AACACCCAGGATTCTTATGGCAACCCTGAGACCGGTTCAGGTATTGTTGATGTGACCACTGACTC
TAACGGGTCGTTGACCACTTCCACCTCAAGATACCCAGAAGCCTCGATGCCTTCCACCGATGTCA
CTTCAACCCCAGCATCTGACTCGGGTTGTCCCGACTGCACGCATTACACGTCAACATGGACAACT
ACTGACGCCCAGGGCAATCCAGAGAGTGGCTCAGGAATTGTGGACGTTACAACGGATTCTATTGG
GTCGTTGGTCACATCCACTCTGGCCTTCCCTACTTCTGGATGCACTGATTGCACACGGTTCACCT
CAACATGGACATCGACAGGTACCAGTGGTGAGCCAGGGACATACT
Found at i:714 original size:222 final size:222
Alignment explanation
Indices: 318--1118 Score: 1300
Period size: 222 Copynumber: 3.7 Consensus size: 222
308 CTTCTTCTGT
* * *
318 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACATCACCACCTGGA
1 GCCCACGTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
383 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
66 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
448 GACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTCGCTGGAGTC
131 GACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTCGCTGGAGTC
513 CCTGTCTGCTGCTTCTCCCCAGGGCGA
196 CCTGTCTGCTGCTTCTCCCCAGGGCGA
*
540 GCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
1 GCCCACGTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
*
605 CCACCACTGACGAGAACGGTAACCCCGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
66 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
* * * *
670 GACGGATCTTTGACCACCTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTC-TTCGGA--
131 GACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTCGCT-GGAGT
* *
732 ----GACT--T-CTTCT---------GT
195 CCCTGTCTGCTGCTTCTCCCCAGGGCGA
* *
744 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
1 GCCCACGTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
*
809 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGGCTCC
66 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
874 GACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTCGCTGGAGTC
131 GACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTCGCTGGAGTC
939 CCTGTCTGCTGCTTC-CCCTCAGGGCGA
196 CCTGTCTGCTGCTTCTCCC-CAGGGCGA
*
966 GCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
1 GCCCACGTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
1031 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
66 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
*
1096 GACGGATCCTTGACCACTTCGAC
131 GACGGATCCTTGACCACCTCGAC
1119 ATCGCAATTC
Statistics
Matches: 531, Mismatches: 27, Indels: 42
0.88 0.05 0.07
Matches are distributed among these distances:
204 182 0.34
205 1 0.00
210 3 0.01
212 1 0.00
213 9 0.02
214 1 0.00
216 3 0.01
221 1 0.00
222 330 0.62
ACGTcount: A:0.17, C:0.33, G:0.25, T:0.24
Consensus pattern (222 bp):
GCCCACGTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
GACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTCGCTGGAGTC
CCTGTCTGCTGCTTCTCCCCAGGGCGA
Left flanking sequence: Indices 1 -- 317
GAGACTGACTCGGGTGTCGTTGCGGTGACCACTGACTCGCAAGGGTCGTTGACCACCTCCACTTC
GGCTTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGTGCCCACGTCTGGGTCTG
TTTCTGAGACTGGCTGTCCTGAATGTACTGAGTACACCACCACCTGGACCACCACTGACGAGAAC
GGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCCGACGGATCTTTGACCAC
CTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
Right flanking sequence: Indices 1119 -- 1618
ATCGCAATTCACTCAGTCTGCTCCCACAGGCACTGTTGAAGCTCCTACTGGCAACGCCCCTCTGG
GTTTAGATTCTACAAGCGAATCTCACAGCATTTGCCCAGAGTGCACCCACTATACTACCACGTGG
AACACCCAGGATTCTTATGGCAACCCTGAGACCGGTTCAGGTATTGTTGATGTGACCACTGACTC
TAACGGGTCGTTGACCACTTCCACCTCAAGATACCCAGAAGCCTCGATGCCTTCCACCGATGTCA
CTTCAACCCCAGCATCTGACTCGGGTTGTCCCGACTGCACGCATTACACGTCAACATGGACAACT
ACTGACGCCCAGGGCAATCCAGAGAGTGGCTCAGGAATTGTGGACGTTACAACGGATTCTATTGG
GTCGTTGGTCACATCCACTCTGGCCTTCCCTACTTCTGGATGCACTGATTGCACACGGTTCACCT
CAACATGGACATCGACAGGTACCAGTGGTGAGCCAGGGACATACT
Found at i:855 original size:426 final size:426
Alignment explanation
Indices: 114--1118 Score: 1913
Period size: 426 Copynumber: 2.4 Consensus size: 426
104 CTTCTTCTGT
* * * *
114 GCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGAATGTACTGAGTACACCACCACCTGGA
1 GCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
179 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
66 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
244 GACGGATCTTTGACCACCTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGAC
131 GACGGATCTTTGACCACCTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGAC
*
309 TTCTTCTGTGCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACATCA
196 TTCTTCTGTGCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCA
374 CCACCTGGACCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACC
261 CCACCTGGACCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACC
439 ACGGACTCCGACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTC
326 ACGGACTCCGACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTC
504 GCTGGAGTCCCTGTCTGCTGCTTCTCCC-CAGGGCGA
391 GCTGGAGTCCCTGTCTGCTGCTTC-CCCTCAGGGCGA
540 GCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
1 GCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
*
605 CCACCACTGACGAGAACGGTAACCCCGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
66 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
670 GACGGATCTTTGACCACCTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGAC
131 GACGGATCTTTGACCACCTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGAC
735 TTCTTCTGTGCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCA
196 TTCTTCTGTGCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCA
800 CCACCTGGACCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACC
261 CCACCTGGACCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACC
*
865 ACGGGCTCCGACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTC
326 ACGGACTCCGACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTC
930 GCTGGAGTCCCTGTCTGCTGCTTCCCCTCAGGGCGA
391 GCTGGAGTCCCTGTCTGCTGCTTCCCCTCAGGGCGA
966 GCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
1 GCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
1031 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
66 CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
* *
1096 GACGGATCCTTGACCACTTCGAC
131 GACGGATCTTTGACCACCTCGAC
1119 ATCGCAATTC
Statistics
Matches: 568, Mismatches: 10, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
425 3 0.01
426 565 0.99
ACGTcount: A:0.18, C:0.33, G:0.25, T:0.25
Consensus pattern (426 bp):
GCCCACTTCCGGGTCTGTTTCTGAGACCGGCTGTCCTGACTGTACTGAGTACACCACCACCTGGA
CCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACCACGGACTCC
GACGGATCTTTGACCACCTCGACCTCGTTGTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGAC
TTCTTCTGTGCCCACGTCTGGGTCTGTTTCTGAGACTGGCTGTCCTGACTGTACTGAGTACACCA
CCACCTGGACCACCACTGACGAGAACGGTAACCCTGAGACTGGCTCTGGTATTGTTGATGTCACC
ACGGACTCCGACGGATCCTTGACCACCTCGACCTCGTCGTTCCCTAAGCCTTCGGCCGAGTCGTC
GCTGGAGTCCCTGTCTGCTGCTTCCCCTCAGGGCGA
Left flanking sequence: Indices 1 -- 113
GAGACTGACTCGGGTGTCGTTGCGGTGACCACTGACTCGCAAGGGTCGTTGACCACCTCCACTTC
GGCTTTCCCTAAGCCTTCGGCTGAGTCGTCTTCGGAGACTTCTTCTGT
Right flanking sequence: Indices 1119 -- 1618
ATCGCAATTCACTCAGTCTGCTCCCACAGGCACTGTTGAAGCTCCTACTGGCAACGCCCCTCTGG
GTTTAGATTCTACAAGCGAATCTCACAGCATTTGCCCAGAGTGCACCCACTATACTACCACGTGG
AACACCCAGGATTCTTATGGCAACCCTGAGACCGGTTCAGGTATTGTTGATGTGACCACTGACTC
TAACGGGTCGTTGACCACTTCCACCTCAAGATACCCAGAAGCCTCGATGCCTTCCACCGATGTCA
CTTCAACCCCAGCATCTGACTCGGGTTGTCCCGACTGCACGCATTACACGTCAACATGGACAACT
ACTGACGCCCAGGGCAATCCAGAGAGTGGCTCAGGAATTGTGGACGTTACAACGGATTCTATTGG
GTCGTTGGTCACATCCACTCTGGCCTTCCCTACTTCTGGATGCACTGATTGCACACGGTTCACCT
CAACATGGACATCGACAGGTACCAGTGGTGAGCCAGGGACATACT
Found at i:2146 original size:144 final size:144
Alignment explanation
Indices: 1972--2501 Score: 979
Period size: 144 Copynumber: 3.7 Consensus size: 144
1962 CTCTAGTGAA
* * *
1972 TGTCCTCAATGCACTCACTACCCGACCACCGTGGTGACCACCGGCTCTGATGGCCAGCCCACCAC
1 TGTCCTCAGTGCACTCAATACCCGACCACCGTGGTGACCACCGGCTCCGATGGCCAGCCCACCAC
*
2037 TTACCTGGGTATGGTTGACGTTACCACTGACTCGATTGGCTCGTTGACAACCCTGACGCTGGCCT
66 TTACCTGGGTATGGTTGACGTAACCACTGACTCGATTGGCTCGTTGACAACCCTGACGCTGGCCT
**
2102 TCCCTGATACTGGG
131 TCCCTGACGCTGGG
2116 TGTCCTCAGTGCACTCAATACCCGACCACCGTGGTGACCACCGGCTCCGATGGCCAGCCCACCAC
1 TGTCCTCAGTGCACTCAATACCCGACCACCGTGGTGACCACCGGCTCCGATGGCCAGCCCACCAC
* *
2181 TTACCTGGGTATGGTTGACGTTACCACTGACTCGATTGGCTCGTTGACGACCCTGACGCTGGCCT
66 TTACCTGGGTATGGTTGACGTAACCACTGACTCGATTGGCTCGTTGACAACCCTGACGCTGGCCT
2246 TCCCTGACGCTGGG
131 TCCCTGACGCTGGG
*
2260 TGTCCTCAGTGCACTCACTACCCGACCACCGTGGTGACCACCGGCTCCGATGGCCAGCCCACCAC
1 TGTCCTCAGTGCACTCAATACCCGACCACCGTGGTGACCACCGGCTCCGATGGCCAGCCCACCAC
2325 TTACCTGGGTATGGTTGACGTAACCACTGACTCGATTGGCTCGTTGACAACCCTGACGCTGGCCT
66 TTACCTGGGTATGGTTGACGTAACCACTGACTCGATTGGCTCGTTGACAACCCTGACGCTGGCCT
2390 TCCCTGACGCTGGG
131 TCCCTGACGCTGGG
2404 TGTCCTCAGTGCACTCAATACCCGACCACCGTGGTGACCACCGGCTCCGATGGCCAGCCCACCAC
1 TGTCCTCAGTGCACTCAATACCCGACCACCGTGGTGACCACCGGCTCCGATGGCCAGCCCACCAC
2469 TTACCTGGGTATGGTTGACGTAACCACTGACTC
66 TTACCTGGGTATGGTTGACGTAACCACTGACTC
2502 TAACGGGTCC
Statistics
Matches: 376, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 376 1.00
ACGTcount: A:0.18, C:0.36, G:0.24, T:0.22
Consensus pattern (144 bp):
TGTCCTCAGTGCACTCAATACCCGACCACCGTGGTGACCACCGGCTCCGATGGCCAGCCCACCAC
TTACCTGGGTATGGTTGACGTAACCACTGACTCGATTGGCTCGTTGACAACCCTGACGCTGGCCT
TCCCTGACGCTGGG
Left flanking sequence: Indices 1472 -- 1971
GCTCAGGAATTGTGGACGTTACAACGGATTCTATTGGGTCGTTGGTCACATCCACTCTGGCCTTC
CCTACTTCTGGATGCACTGATTGCACACGGTTCACCTCAACATGGACATCGACAGGTACCAGTGG
TGAGCCAGGGACATACTCAGGCATTGTGGATGTTACCACTGACTCCATGGGGTCATTGACGACTT
CGGTGTCAACTTACCCCAATAGTCCTCTGTCCTCTCCGCAGGATCTGTCCAGCTGGACTACCCTT
GCGGGCGATCCCAAATCGAACACCGACCTGGATGCCAACTTGGCCACGAACTGTCCAGTTTGTAC
CCAATACCCCACCACGGTAGTGACCACGGGGTCTGATGGATCCCCCTTGACTTACTCAGGTTTGG
TTGATGTGACCACTGATTCTTTGGGCTCGTTGACCACTTCGGTCTCCACTTATCCATCTGACTCA
GAGACTCCTTCGGTCACGGGTACCGTGAAGGTACCCTCTAGTGAA
Right flanking sequence: Indices 2502 -- 3001
TAACGGGTCCTTGGTGACCTCTACCGCCACGCACTGTGCGCAGTGCACCCAGTACCCCACTGTCA
TCACTACGGCCGGAGCTGATAACGAGCCCACTTCGTACGCTGGTATCGTTGACGTGACCACAGAC
GACCAGGGTTCGTTGGTGACCACCACGGTCACTCATGGGTGTCCCCAATGCACCGTGAATACTTG
TTCCTGGACCACCACTGGTGAAGACGGGAAGCCCACCACTGGCTCTGGTGTTGTTGACGTGGTGA
CCGATTCCAACGGTCTGCTTGTGATTACGACCTCGACATTGCCCGGTCCTGAGACCACCGTCAAG
GAGTGCCCTGTGTGCACTGCCTACCCTACGACCTGGGCTTCTGTTGGTTCCGATGGCAAGCAGAC
TACGGTCTCCGCCATCGTGGACGTGAACACCAACTCTCAGGGCCAGGTGGTCACGGTGACTAAGA
CCGAGTGCGACTGTTGCACCGCCTACCCGACTCAGTGGACGTCCA
Found at i:5990 original size:18 final size:18
Alignment explanation
Indices: 5963--6006 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
5953 CCACAATAAT
* * *
5963 TTCAAAACCTTGAAATCC
1 TTCAACACCTTCAAAACC
5981 TTCAACACCTTCAAAACC
1 TTCAACACCTTCAAAACC
5999 TTCAACAC
1 TTCAACAC
6007 TGTCAATTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.34, G:0.02, T:0.25
Consensus pattern (18 bp):
TTCAACACCTTCAAAACC
Left flanking sequence: Indices 5463 -- 5962
CTGGGTGGCAAAGATGAGGTGCAAGAGGCGAACATCGCGTGGGATGGCCCCCTGTTTGTCCGTCT
GCTCCGAGGGACCCGACATGGTGGTGTGTGGTGGGTGCGAGTGGTATATGGGTGTTGCAGCAAGA
GTGTTGAGCGAGGGGAAGGAGAAGGAAGAAAGGTAGAGAAGGAAGAGAGGGAGGGAAAATGGGTG
AAAACAAAGAAGGATGGGACTTAAAAGGACTTGAAGATAATTTTTCCTATGTCTCCTGGTGATCT
AGGGTTTGATTCTTTTGCTTTTCTGGTGTCGTAAGGCTGTTTTGATCAAAGTATTGAAGATAATG
GTGCGAAATATTGACTAAGACTTTGGAAACAAAACTCTGGCAGTAATTGTTCTGGAAACAATCAG
TTATAGCAAACACTAAACGAACCGTCTCGTTACGGGACGGGCCCCAACAACACCCTCAAACACCC
TTAAACCCCCACACACCCTCAAATACTCTAAACATCCACAATAAT
Right flanking sequence: Indices 6007 -- 6506
TGTCAATTGCACCGCTAAGCCCTTTACACCCTTACACCCCTATACCCACACCCACCCTACACTGC
AGCCTGGCCGCTACTGGTTGCGAAAATTCACAATTTTTCATACATAATTCTAATCGCCCGCCACC
CACGGAGGACCCAGGTGGCCTGCGCGAACATTTTCTTAGAAGCACTTGTGGTGGACAATCGAGGG
CCCGGACTCGTCGTACTCCTGCTTCGAGATCCACATCTGCTGGAAGGTAGACAACGAGGCCAAGA
TGGAACCACCGATCCACACAGAGTACTTTCTCTCCGGGGGAGCAATGATCTTCACCTTCATCAGC
GAGGGAGCCAACGAGGTGATCTCCTTCTGCATACGCTCGGCAATACCGGGGAACATGGTGGTACC
ACCGGACATGACAATGTTGTTGTACAACTCCTTTCTGACGTCCAAGTCACACTTCATGATCGAGT
TGTAGGTCAACTGGTCGATACCGGCAGACTCCATACCCAAGTCGG
Found at i:7423 original size:9 final size:9
Alignment explanation
Indices: 7408--7452 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
7398 ATTTTTAGCG
7408 ATTTGGGCA
1 ATTTGGGCA
*
7417 GTTTGGGCA
1 ATTTGGGCA
7426 ATTTGGGC-
1 ATTTGGGCA
* *
7434 AGTTGCGCA
1 ATTTGGGCA
7443 ATTTGGGCA
1 ATTTGGGCA
7452 A
1 A
7453 AAAAGGTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
8 6 0.21
9 23 0.79
ACGTcount: A:0.20, C:0.13, G:0.36, T:0.31
Consensus pattern (9 bp):
ATTTGGGCA
Left flanking sequence: Indices 6908 -- 7407
GCAGGCACGTTGAAGGTCTCGAACATGATCTGGGTCATCTTCTCTCTGTTGGTCTTGGGGTTCAT
GGGGGCCTCGGTCAACAACACGGGGTGCTCCTCGGGGGCAACACGCAACTCGTTGTAGAAGGTGT
GGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGACGATACCGTGCTCGATGGGGTAACGCAAG
GTCAAGATACCACGCTTGGACTGGGCCTCGTCACCGACGTACGAGTCCTTCTGGCCCATGCCGAC
CATGATACCCTGGTGACGGGGGCGACCGACAATCGAGGGGAAAACGGCCCGGGGAGCGTCGTCAC
CGGCAAAACCGGCCTTGCACATACCGGAACCGTTGTCAATAACCAAAGCAGCAACTTCTTCTATT
TTTGTTAGTAGCGGTTCGCGTTGACGAGGCAATGCTTATGGGGTTGGGGCTTGGAGCGTATGGGG
CTTATAGTGTGGCGTTGTCCCAGGTTTAGGGCTCGATTTTTAGCG
Right flanking sequence: Indices 7453 -- 7952
AAAAGGTCATTACCGGATCGCACCGACGGGTTGTTTTCCTTGGGCAACTTCCCTGGCCACCGTGT
TTGCCGGTGCCCGTGTGTGAGCCCGCTGGTTGCGTGGGTTGCGGGGCCCGGGTGTGGAAAATTTC
ACATTTGCGCGCGCATGGGATAAAAAGCAACCGAGTAATAGGGGGCGGGGCTGGCCACCGCCTGT
GGGCTGAGCGGTGGTGGAAACGCTGGTTCGCAACCACCACTGGGTCTCCACACCCTGGGTGGTTC
CCCATGGCTGCCCTGTTTCCCGTTTCCCGCCAATTCTCCTGGTTGCCCCTTTTCGTCCATTGCGA
TTTTCGCGCGCGGGGAATTGGCCGGCCGCCACGGGCCCGTAGAACCACCAGCGAGCCCAGACTAG
GGCAGAGCCCGGTCTATGGGGGCCACCCGGTCCCAATTGTGTTGCTTGCCGGCGCTTCTGGTCCA
CCATTGTCGGAATCGTGTTTGGAATCACCAGATCGCCCGCCCGTG
Found at i:7445 original size:17 final size:18
Alignment explanation
Indices: 7408--7451 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
7398 ATTTTTAGCG
*
7408 ATTTGGGCAGTTTGGGCA
1 ATTTGGGCAGTTTGCGCA
7426 ATTTGGGCAG-TTGCGCA
1 ATTTGGGCAGTTTGCGCA
7443 ATTTGGGCA
1 ATTTGGGCA
7452 AAAAAGGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.18, C:0.14, G:0.36, T:0.32
Consensus pattern (18 bp):
ATTTGGGCAGTTTGCGCA
Left flanking sequence: Indices 6908 -- 7407
GCAGGCACGTTGAAGGTCTCGAACATGATCTGGGTCATCTTCTCTCTGTTGGTCTTGGGGTTCAT
GGGGGCCTCGGTCAACAACACGGGGTGCTCCTCGGGGGCAACACGCAACTCGTTGTAGAAGGTGT
GGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGACGATACCGTGCTCGATGGGGTAACGCAAG
GTCAAGATACCACGCTTGGACTGGGCCTCGTCACCGACGTACGAGTCCTTCTGGCCCATGCCGAC
CATGATACCCTGGTGACGGGGGCGACCGACAATCGAGGGGAAAACGGCCCGGGGAGCGTCGTCAC
CGGCAAAACCGGCCTTGCACATACCGGAACCGTTGTCAATAACCAAAGCAGCAACTTCTTCTATT
TTTGTTAGTAGCGGTTCGCGTTGACGAGGCAATGCTTATGGGGTTGGGGCTTGGAGCGTATGGGG
CTTATAGTGTGGCGTTGTCCCAGGTTTAGGGCTCGATTTTTAGCG
Right flanking sequence: Indices 7452 -- 7951
AAAAAGGTCATTACCGGATCGCACCGACGGGTTGTTTTCCTTGGGCAACTTCCCTGGCCACCGTG
TTTGCCGGTGCCCGTGTGTGAGCCCGCTGGTTGCGTGGGTTGCGGGGCCCGGGTGTGGAAAATTT
CACATTTGCGCGCGCATGGGATAAAAAGCAACCGAGTAATAGGGGGCGGGGCTGGCCACCGCCTG
TGGGCTGAGCGGTGGTGGAAACGCTGGTTCGCAACCACCACTGGGTCTCCACACCCTGGGTGGTT
CCCCATGGCTGCCCTGTTTCCCGTTTCCCGCCAATTCTCCTGGTTGCCCCTTTTCGTCCATTGCG
ATTTTCGCGCGCGGGGAATTGGCCGGCCGCCACGGGCCCGTAGAACCACCAGCGAGCCCAGACTA
GGGCAGAGCCCGGTCTATGGGGGCCACCCGGTCCCAATTGTGTTGCTTGCCGGCGCTTCTGGTCC
ACCATTGTCGGAATCGTGTTTGGAATCACCAGATCGCCCGCCCGT
Found at i:9390 original size:9 final size:9
Alignment explanation
Indices: 9378--9405 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
9368 TTCTTCCTTA
9378 CGTCGTCTT
1 CGTCGTCTT
9387 CGTCGTCTT
1 CGTCGTCTT
9396 CGTCGTCTT
1 CGTCGTCTT
9405 C
1 C
9406 ACCTCTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.36, G:0.21, T:0.43
Consensus pattern (9 bp):
CGTCGTCTT
Left flanking sequence: Indices 8878 -- 9377
GGTCGTCTCCCGGGACCCTATGTTTCTATTATTGTCCTCTGCCCGCCGCCCACGCACCGTGGACT
GCCTCTTGGCACGTCGCTGGTGGCAACCCGTTGCGAGCCCTGCATGGGGGCGCTGTTTAATTGCC
ACCGGATGACGACACTGGACGCGAAGTAAAGCACGATCTTGGGCCAGCGACGTGTACAGAGGGGA
TTTATTTACTAAGGTAGGGCGCCAAACGGTAATGGGGCCGTCGTATTATTGTCTGGGGAAAATAA
CGTGGGCAAGACCTGGTGAGACCTGGTGGTTGCTACATCCCGCAACCTTGGTGCAACCTTGGTGG
GTTTTCTCTTTTCAAAAGACTGTCAGCACTAACTCCGTAACCATTGGCAACTCCGGTGGGCACCA
CGGATAGAGAGTGCCAAGAGACAAGCCATAGTCCTGAACCGTCTCTATTCTACACCCACGCCCTA
CTCCCCTCTACGCTGTTCTCTTAGTTCTCTTCTCGTTCTTCCTTA
Right flanking sequence: Indices 9406 -- 9905
ACCTCTTATTGTACTCACTTCCCCATCTCGCACACTGCCTCAACCTTCCACCGCCCACCTGGCAT
TTCTTTTCGCTGGCTGAAAGCCTGCCAGCAAAATGATCCGCCCCTTTTTTCGCTGGCAGGTGCGC
ACACCAAAAATCTCAGTGCCAGACCGACGGATAGCTTGCGTTTCCCCTAGTCCCATCTATTTGAC
ATGTCTTCCTCCGTTCCATATGATCCCTATGAGCCCCAGACCCAGGGCGGTTCTTCGCAAAACCG
TACTGCGGCGATCCAGGCGGTAAGTATACCTTTAGGAAAGTTCCGAGCCGGCCGAGCCACTGGTC
CGTTTTGATTTCGAGATCGATCGAGAAACGGGCGGTGTCACGGGGCTGCGGAGCGTCCGCAGATG
TTGTTTGTGTGTTTCGTTTGTTTGTTGAGCCGATTTTGGCGATTTTTTACGGTGTTTAGTGGTCC
ATGGGCTGCGAGGCCTGATTTTTGGCTTATGCCGCGGTGGGAGCC
Found at i:23442 original size:9 final size:9
Alignment explanation
Indices: 23428--23459 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
23418 AGAGGGTCAG
23428 CGTCCTCGT
1 CGTCCTCGT
23437 CGTCCTCGT
1 CGTCCTCGT
*
23446 CGTCCTCAT
1 CGTCCTCGT
23455 CGTCC
1 CGTCC
23460 ACCTCCTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.03, C:0.47, G:0.19, T:0.31
Consensus pattern (9 bp):
CGTCCTCGT
Left flanking sequence: Indices 22928 -- 23427
TTATGTCAAGAACCTGTCAAAATAAGCAACTATGGACCGCGGGTAAGGTGAAACCGAGCTCAAAA
ATAACGTATAGAGAGCACGGCCGTGTCACCATGATGTAATACAGATGGTCGACCAGCAAACTAGA
GCTTATACACTTCGTTTCCCATCCCAATGCCATTAAATATAAACCGATAATACTTACTGCAAAAG
CGGGTCGCGGAAATGGGGCTGGTTGTTGATAAACTTGGCCGATCTCCGGTCGTTGGTGTCCTCGC
GCTTCTTCTGGTTGGCCCAGGCCCGCTTCTTCTCCTTCAACTCCTGTCTCTCAGGCAACGTCAAC
ATGTGGCGGGTCTCGGCAGCAATGACGGTGCCCTGGCCCTCCAGCAAGATCCGCTCGGGCGCTGG
TGTCTGATGGTAGTACCGGTTGTACATTCTGTGGCCAAGCACCTGGCCCAGGGGAAGCACGAGCG
AGTTCCCGTGGCGGTAGATGACGTCGTCCGCGGTGAGAGGGTCAG
Right flanking sequence: Indices 23460 -- 23959
ACCTCCTCACCACTAACGTCCTCCCACTCTCCGTCGTCCTCCTGGGCCACGTCGTCGGCGTTGAC
GATGGTTCTGGGCTTGTAGGAGCTGGTAAAGTCGTAGAACTCTCCGATCTCGAGCTTCTCGTCCT
CGTTCTCGTAGGGAATCCGCATGTGTCTCTTCAGGGCCATGTGTTCGCGAGCACCCTGGCACGTC
CGCGACTGGTACGAGCAGGCAATGCAGAAACCAAACCCGATCTTCTCGCCGAGATAGCTCAAAAG
ACCAGGCAAGTCCGTGAGGTAGTTGCGTTCGGGGATGTACATCCCGTGGGCCTTGAACATGTGGG
TAGCGTTCTCCTCCGGGGAGTCGAATTCACGGGGTTTGTGGCAGAAGAGACAGGTGGTGGGGGGG
ATGTCAACCTTGGCCGCGAGCTTGCTGGCCACGAGGTCTTCTTCGGTGGGTTCGGTGGGCTCGGA
CGCCTCGGTGGGTTCGGAAACTTCGGTGGGCTCGGAAGTTTCGGT
Found at i:23957 original size:18 final size:18
Alignment explanation
Indices: 23900--23967 Score: 82
Period size: 18 Copynumber: 3.8 Consensus size: 18
23890 CTTCGGTGGG
*
23900 TTCGGTGGGCTCGGACGC
1 TTCGGTGGGCTCGGAAGC
* * *
23918 CTCGGTGGGTTCGGAAAC
1 TTCGGTGGGCTCGGAAGC
*
23936 TTCGGTGGGCTCGGAAGT
1 TTCGGTGGGCTCGGAAGC
*
23954 TTCGGTGGGTTCGG
1 TTCGGTGGGCTCGG
23968 TCAGAGAGCT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.09, C:0.21, G:0.44, T:0.26
Consensus pattern (18 bp):
TTCGGTGGGCTCGGAAGC
Left flanking sequence: Indices 23400 -- 23899
ATGACGTCGTCCGCGGTGAGAGGGTCAGCGTCCTCGTCGTCCTCGTCGTCCTCATCGTCCACCTC
CTCACCACTAACGTCCTCCCACTCTCCGTCGTCCTCCTGGGCCACGTCGTCGGCGTTGACGATGG
TTCTGGGCTTGTAGGAGCTGGTAAAGTCGTAGAACTCTCCGATCTCGAGCTTCTCGTCCTCGTTC
TCGTAGGGAATCCGCATGTGTCTCTTCAGGGCCATGTGTTCGCGAGCACCCTGGCACGTCCGCGA
CTGGTACGAGCAGGCAATGCAGAAACCAAACCCGATCTTCTCGCCGAGATAGCTCAAAAGACCAG
GCAAGTCCGTGAGGTAGTTGCGTTCGGGGATGTACATCCCGTGGGCCTTGAACATGTGGGTAGCG
TTCTCCTCCGGGGAGTCGAATTCACGGGGTTTGTGGCAGAAGAGACAGGTGGTGGGGGGGATGTC
AACCTTGGCCGCGAGCTTGCTGGCCACGAGGTCTTCTTCGGTGGG
Right flanking sequence: Indices 23968 -- 24467
TCAGAGAGCTGGCCTCGGAAACGGGCTGAGCCTGGTCTTGGGTGTTGGAGGGGGCTATGGTTTGC
TCGGCCTGTTTGCTTGAGGTCGTAGGCGCAGGCTTTTCGTCCTCGGTCTTCGAGGCCTCCTTTTG
CGACTCAGCCATCGCCTTGCGGGCCATCGCCAAGATCTGGCGCTTCTGCTCCTGGATCTCCTCCT
TCTTCTTGCGACGTTCGTCCCGCTTGGTCTGCTGCTGAGTCTCCTCGGGCTGGGTTAACACCGCC
ACCTTTTCGGTGAACTGGGCCTCCAGGATGGGGGGCAATTGTGCCACGCGACGTTTGAGGTTGTA
GCGATGCCAGTCGCTACGCATGTGGTCCCGCTGGGACTGCGAGCTGTCAAATGAGAGCGTACACG
TGTTACAGGTGAACATGCTCTATGGTATCGATGCGATGAGGATAAGCGATGAGCGCGATGAGCTG
AAAAAAGGGTGGTGGAGAAGGTAGGCAGGAAGAGGGGTGTACAAA
Found at i:37835 original size:5 final size:5
Alignment explanation
Indices: 37797--37844 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
37787 TACCATTGTT
* * *
37797 CTCTC CTC-C CTTCCC CTCCC CTCTC CTCTC CTCTC CTCTC TTCTC CTC
1 CTCTC CTCTC C-TCTC CTCTC CTCTC CTCTC CTCTC CTCTC CTCTC CTC
37845 CACCCTCCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
4 2 0.05
5 34 0.89
6 2 0.05
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (5 bp):
CTCTC
Left flanking sequence: Indices 37297 -- 37796
CTTGACTTTGTTGAGCTGGTGTACGTGCCCCAGATCGACAGCTACATCTTGAACTACAAGCAGTT
GTCGCAGGATGACATCACCTACAAGTACAACTACTTTGAGGAGATGTTGTTGAAGGAGTTGATGA
AGTTGGACGAGGTCGAGGTCACCGGGAACGACATTCTCCGCGAGAACCGCCGCAAGGTGATCAAG
TTTATCCAGGACCACCAGAAGCGGTTGGACAAGTTTAGACTGGAGGTGGGGTTTTAATAGTAATA
AGATCGACTGTCATTGATGCGAATGAGCTAGAAATTGTAGAGTGTTGTAGAGGCGCAGAGTTGAC
GAGAGGGTGTGGAAAGGCTGTACAATGGATAAAGCTCAAAACTTGGTTTATGAAACTGGAAGAAA
CAACTCGTAAGTTGCTGTCGAAACAATATGGTAAGGTTTTGGTGCAAAATGGAGCTGTCCCACGC
TCACAATTGCCCACGCACTATTGTTTCGCCAAGCCTACCATTGTT
Right flanking sequence: Indices 37845 -- 38344
CACCCTCCTTCCGTGCATGGACCCTGTCCTCGTATATCGCTTCGGCACAGCTTCGCGGTTTCCAC
ACATACTATTAATACATAATACAACACAGCCGGAACCAGTCCTACTTTTGCGCCTGCTGCTGGCG
GTGCGCCAACAACTGCTGTTGCTGCTGCTGGTAGCGCTGCAACTGCTGCTGGAACGCCTGCTGCT
GCAACTGGTTGACGTGGGCCGTCATCGAGATGGCCTTGGACGGAGCCCGCACCTGGTACACCTCG
CCGGGGATCAGCAGGTACGCCTGGGTCTGCTCCAGAGTCTGGTCGACGTTGATGAGCGCACACCG
GCCCTGGAGCCCGCCAATGGACCCCAGGATCGCCTGGTTGGCCAACGTCTGGTCCAGGGCGTTGG
CGTCGGTCTGCGCCAGTTTCTGGGCGCTGTTGTTGGCCAGGATGATCAACGCGTTGGCGTAGGCC
TCGCGCATGGCCAAGAACCGGTGTCTGCTGCGCAACGGCATGATC
Found at i:38041 original size:21 final size:21
Alignment explanation
Indices: 37989--38041 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
37979 GCCAACAACT
* *
37989 GCTGTTGCTGCTGCTGGTAGC
1 GCTGCTGCTGCTGCTGGAAGC
**
38010 GCTGCAACTGCTGCTGGAA-C
1 GCTGCTGCTGCTGCTGGAAGC
38030 GCCTGCTGCTGC
1 G-CTGCTGCTGC
38042 AACTGGTTGA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.09, C:0.30, G:0.34, T:0.26
Consensus pattern (21 bp):
GCTGCTGCTGCTGCTGGAAGC
Left flanking sequence: Indices 37489 -- 37988
AAGTTTATCCAGGACCACCAGAAGCGGTTGGACAAGTTTAGACTGGAGGTGGGGTTTTAATAGTA
ATAAGATCGACTGTCATTGATGCGAATGAGCTAGAAATTGTAGAGTGTTGTAGAGGCGCAGAGTT
GACGAGAGGGTGTGGAAAGGCTGTACAATGGATAAAGCTCAAAACTTGGTTTATGAAACTGGAAG
AAACAACTCGTAAGTTGCTGTCGAAACAATATGGTAAGGTTTTGGTGCAAAATGGAGCTGTCCCA
CGCTCACAATTGCCCACGCACTATTGTTTCGCCAAGCCTACCATTGTTCTCTCCTCCCTTCCCCT
CCCCTCTCCTCTCCTCTCCTCTCTTCTCCTCCACCCTCCTTCCGTGCATGGACCCTGTCCTCGTA
TATCGCTTCGGCACAGCTTCGCGGTTTCCACACATACTATTAATACATAATACAACACAGCCGGA
ACCAGTCCTACTTTTGCGCCTGCTGCTGGCGGTGCGCCAACAACT
Right flanking sequence: Indices 38042 -- 38541
AACTGGTTGACGTGGGCCGTCATCGAGATGGCCTTGGACGGAGCCCGCACCTGGTACACCTCGCC
GGGGATCAGCAGGTACGCCTGGGTCTGCTCCAGAGTCTGGTCGACGTTGATGAGCGCACACCGGC
CCTGGAGCCCGCCAATGGACCCCAGGATCGCCTGGTTGGCCAACGTCTGGTCCAGGGCGTTGGCG
TCGGTCTGCGCCAGTTTCTGGGCGCTGTTGTTGGCCAGGATGATCAACGCGTTGGCGTAGGCCTC
GCGCATGGCCAAGAACCGGTGTCTGCTGCGCAACGGCATGATCACGTTGCGCTCTAGCGGGATGG
GGTTGTTCTTGGAGAGACCCTCGAGCACCAACTGGGTCTCCTCGTCCGGGTCAAGCACGCGGGTG
GCAAACACGTCGTCGTCGCGGAGCTCGGCGTTCTCGCGCTGCTGCACCGCAAGCGCGTTGGACGC
GGCCATCTTGGCTTTGTTCCGTTTTTGGTACTGCTGCAAAAGCAC
Found at i:39885 original size:20 final size:20
Alignment explanation
Indices: 39860--39905 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
39850 CTACTCATCC
*
39860 AGCCACTATAACCAGCGCTT
1 AGCCACTAGAACCAGCGCTT
*
39880 AGCCACTCGAACCAGCGCTT
1 AGCCACTAGAACCAGCGCTT
39900 AGCCAC
1 AGCCAC
39906 CCTTCTGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.39, G:0.17, T:0.15
Consensus pattern (20 bp):
AGCCACTAGAACCAGCGCTT
Left flanking sequence: Indices 39360 -- 39859
GGGGAGTTTTGGGTGGTGGGATGTGGTGTGGGGAGTGTGAAAGAGGGTATTATGGGTTTTTTGGT
GGTTTGTTCTGGGGTTCTTTTGGTGTTTTGGGGGGGTGTTGTTGTAGGTACCGTGAGTGTGATAG
TGTCACGTGAGCACTAGCCGGTAGCAGACGGGAGTGGTTTCAGGCGAGTATGGTGGTGGTGTGGG
TGGTACGGGTGGTGGGGTCAAAGCGGATCGTGGGCTGATTAGGTTTGCGAGGGTTTTAGTCGGTT
TTAGTCAGACTAGTGGGGTGGAAGTGATAGAATCAAGTGGATGGACAAATGCAAGATAGCGGGTG
AATAGTGATGGTTTAACAGGATACTGGAGATAACTCTTGAGAATTTTTGCTTCCAAAGCATTTGA
CGGGCTGAGTACCTGAATTGCACTTGACGCTGGTTGCTGCGTCGAGTACATCACCATCTGTAGAT
GGCAAGACAGAACGCAATGCCAGCTACCGGCAGAACTACTCATCC
Right flanking sequence: Indices 39906 -- 40405
CCTTCTGTCCCCCACCAACCCGCCAGTATCACCCATCAGGGCTCGTAACCCCTTCTCGATGGTTC
CAGAAACCCTTCCACTTTCTCGAACCTTCCAGAATTACCACCACCCGTACTATATATACACCTCG
CCACCTCTTACCTTTCCCACTACACAACAATGACTAAAGCAATCGGTATCGACTTGGGCACCACC
TACTCGTGCGTGGCCCAGTTCCAAAACGACAGATGCGATATCATCGCCAACGACCAGGGTAACAG
AACCACCCCCTCGTTCGTGGCATTCACCGACACCGAGCGGTTGATCGGAGACGCTGCCAAAAACC
AGGCTGCGATGAATCCCTCCAACACCGTGTTTGACGCCAAGCGGTTGATTGGACGCAAGTTCGAC
GACCCTGAGGTCAAGGAGGACATGAAGCACTTCCCATTCAAGGTGGTCGACAAGGCTGGCAAACC
TGCCATTCAGGTGGAGTTCAAGGGCGAGAACAAGACGTTCTCTCC
Found at i:43753 original size:16 final size:15
Alignment explanation
Indices: 43718--43781 Score: 94
Period size: 15 Copynumber: 4.3 Consensus size: 15
43708 GGAGGTGTTT
* *
43718 AGAAGGTTGATGGTG
1 AGAAGGGTGACGGTG
43733 AGAAGGGTGACGGTAG
1 AGAAGGGTGACGGT-G
43749 AGAAGGGTGACGGTG
1 AGAAGGGTGACGGTG
43764 AGAAGGGTGACGGT-
1 AGAAGGGTGACGGTG
43778 AGAA
1 AGAA
43782 AAGAGTGAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
14 4 0.09
15 27 0.59
16 15 0.33
ACGTcount: A:0.31, C:0.05, G:0.48, T:0.16
Consensus pattern (15 bp):
AGAAGGGTGACGGTG
Left flanking sequence: Indices 43218 -- 43717
CCGGGCCGCCGGGGTGCCCTTGGCGCCTATTGCCTTCAAGTGGGACACCGTTGTCGCCAACAACT
CCGCCTACAACACCATTCCCATTTTCACGTGTCACGTGCTCAACTTGGTGGCCCAGCGGGTGCTC
CACGAGCAAGGTGGGGTCGAGGGGATGGAGAAGGTGAACCAGCAGAAGGCCGAGCGGTTGTACGC
TGCGCTCGACGCCTTCCCTGGGTTCTACAATGTGCCTGTGGCGAAGCGTGTGCGGCTGAACATGA
ACGTCGTGTTCACGCTCCCCTCGCCCGAGTTGGAGGAGAAGTTCCTCAAGGAGGCCGGTGAGCGC
CAGCTTTCTGGCTTGAAGGGCCACCGGAGCGTTGGGGGTATGCGTGCGTCGATCTACAACGCCGT
GACCTTGGCCAGTGTCGACAAGTTGGTGGCGTTTGTCCGCGAGTTTGCCGAGAACAACCAGTAGT
ATTTATTAATTGATAAGAGTAGAGATGGGGTATTGGGAGGTGTTT
Right flanking sequence: Indices 43782 -- 44281
AAGAGTGAGGGGTTCGTTTACTTTGTCTTTGATGGTAATTGTTTAATTGGGTTAAAGGTGGGCAG
GTACGTATTTGCAGCCACTTCCATGCAGGTAAGACGAAGAAGTGGTGTTTAATCCAGATTCAAAG
AAGGCCCATGTTCAGGGCCACAAATGGGCCTATATTATGTGTGTAGGAAATGCTGGTGGATGCTG
GGATCATAGTTCTAAACTATCGATTCTACGTGTTGGCTCCCATATCTCGTAATTTTTTCCGTTTT
CATTTAACCCTTCACTCATGAAAGAAGGGGCAGACGACAATAGAGGCTTGCGTGCTTCTGCCCAG
GGGCACTGCAACCGTGTCAATGGCCCACTTTCCCCTCGTATTTCACTTCGGAATTTCCCCTGATG
TGCTGTCACCTGGCACGGAAGTTCCCTGTTCCAGGTTCCTTCAGGTCCAGACTCAACCGTTGCGG
TGGTGATAACCACACAAACACGTAGCTTCCCCAGAAACCGCTGAC
Found at i:43753 original size:31 final size:31
Alignment explanation
Indices: 43718--43789 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
43708 GGAGGTGTTT
* *
43718 AGAAGGTTGATGGTGAGAAGGGTGACGGTAG
1 AGAAGGGTGACGGTGAGAAGGGTGACGGTAG
43749 AGAAGGGTGACGGTGAGAAGGGTGACGGTAG
1 AGAAGGGTGACGGTGAGAAGGGTGACGGTAG
* *
43780 AAAAGAGTGA
1 AGAAGGGTGA
43790 GGGGTTCGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.33, C:0.04, G:0.47, T:0.15
Consensus pattern (31 bp):
AGAAGGGTGACGGTGAGAAGGGTGACGGTAG
Left flanking sequence: Indices 43218 -- 43717
CCGGGCCGCCGGGGTGCCCTTGGCGCCTATTGCCTTCAAGTGGGACACCGTTGTCGCCAACAACT
CCGCCTACAACACCATTCCCATTTTCACGTGTCACGTGCTCAACTTGGTGGCCCAGCGGGTGCTC
CACGAGCAAGGTGGGGTCGAGGGGATGGAGAAGGTGAACCAGCAGAAGGCCGAGCGGTTGTACGC
TGCGCTCGACGCCTTCCCTGGGTTCTACAATGTGCCTGTGGCGAAGCGTGTGCGGCTGAACATGA
ACGTCGTGTTCACGCTCCCCTCGCCCGAGTTGGAGGAGAAGTTCCTCAAGGAGGCCGGTGAGCGC
CAGCTTTCTGGCTTGAAGGGCCACCGGAGCGTTGGGGGTATGCGTGCGTCGATCTACAACGCCGT
GACCTTGGCCAGTGTCGACAAGTTGGTGGCGTTTGTCCGCGAGTTTGCCGAGAACAACCAGTAGT
ATTTATTAATTGATAAGAGTAGAGATGGGGTATTGGGAGGTGTTT
Right flanking sequence: Indices 43790 -- 44289
GGGGTTCGTTTACTTTGTCTTTGATGGTAATTGTTTAATTGGGTTAAAGGTGGGCAGGTACGTAT
TTGCAGCCACTTCCATGCAGGTAAGACGAAGAAGTGGTGTTTAATCCAGATTCAAAGAAGGCCCA
TGTTCAGGGCCACAAATGGGCCTATATTATGTGTGTAGGAAATGCTGGTGGATGCTGGGATCATA
GTTCTAAACTATCGATTCTACGTGTTGGCTCCCATATCTCGTAATTTTTTCCGTTTTCATTTAAC
CCTTCACTCATGAAAGAAGGGGCAGACGACAATAGAGGCTTGCGTGCTTCTGCCCAGGGGCACTG
CAACCGTGTCAATGGCCCACTTTCCCCTCGTATTTCACTTCGGAATTTCCCCTGATGTGCTGTCA
CCTGGCACGGAAGTTCCCTGTTCCAGGTTCCTTCAGGTCCAGACTCAACCGTTGCGGTGGTGATA
ACCACACAAACACGTAGCTTCCCCAGAAACCGCTGACCATTGTCC
Found at i:48347 original size:16 final size:16
Alignment explanation
Indices: 48326--48380 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
48316 GGCTCCATCG
48326 CCTATACACCCTACAC
1 CCTATACACCCTACAC
* *
48342 CCTATACA-CCTATAAA
1 CCTATACACCCTA-CAC
48358 CCTATACACCGC-AC-C
1 CCTATACACC-CTACAC
48373 CCTATACA
1 CCTATACA
48381 ACCCCCGACA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
15 12 0.38
16 17 0.53
17 2 0.06
18 1 0.03
ACGTcount: A:0.35, C:0.44, G:0.02, T:0.20
Consensus pattern (16 bp):
CCTATACACCCTACAC
Left flanking sequence: Indices 47826 -- 48325
AGCAACCGTAAAAAGCAATGCGACCACGGGGGTTATCACCGCTGATCTTCCCCCTGGTAAAGCAA
CTGGAAAATCTTGCCGGTAGACCGATGTTATGTGCCAGGGGCTACATGACAGCTAAACAATTGCC
CCGGATTGTGGATTATGCACTACGTGTAGTGAAACCCTATTTGGTGGTCGGTTGGGTTCGGGTTG
GTTTCGGAGCGAGGAGGATTGCGGCCGCGGGCGGTTGGGACTCGGGCGACTTGACCGCGCCCAGG
CCGGCCCCACCCGGTACCCCTCGTGGGGATCGTCCGGGCCCGATGACTCCAGAGCTCACGTGGGA
TTAGTCAACCAGCCTGTGTCCTGCATGGCGCGATCAAAGGTCGGACCCGGTGACATCATCGATTC
GGGGTTAACGCTGGACGACGGGCTCGGTGAAACTGTTGGCTGAATTATAACTGTTGGTCCTGCCG
GTTGAAATGTCGGGCCCACCGTTGTTTTGTCGGTGGGCTCCATCG
Right flanking sequence: Indices 48381 -- 48880
ACCCCCGACATGCTTTAAAGTACATACGTAGCCTACCGCATACCGGTCTCGGTTCCGACTACGCG
ACTCCGAGCAGACACCCGCCGCTACCGGGCGTTATTGTCCTGCTGGAGGTTCTGCGGCAAATTAA
GGCGTCGCCCATGCGTCGTGGGTGGTTTAGTCGTACGATGGCCGAGAAAGATGCACCCCGGACCC
GGGCTTTGGCTGCACGGGTGCGTCGGGTGTGGCTGGTGAGACGCTGGGCGCGCTGGGGTGGGCAC
GGTTGTGGTGCTGGGAGTCTGGGGTGGCCGTAGAATTTGCAGCCACCGTCAACGAGGGCTACTGG
CTCTCCAGCGCGTTCCGACTACCACCGGGCTAAGCCCGCGACATCTTATTATCAGACAATTGTAG
ATCGACCCACTCGAAGCGTCTCGGGGCGCCCCACAATGGTTTAGTCGAGATCTGACGATACTAAA
ATAGGCCCGGTTGGTGGCAGCCCGGACATTAAGGGGCTCCAGGGG
Found at i:48355 original size:8 final size:8
Alignment explanation
Indices: 48326--48367 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
48316 GGCTCCATCG
48326 CCTATACA
1 CCTATACA
*
48334 CC-CTACA
1 CCTATACA
48341 CCCTATACA
1 -CCTATACA
*
48350 CCTATAAA
1 CCTATACA
48358 CCTATACA
1 CCTATACA
48366 CC
1 CC
48368 GCACCCCTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 4 0.14
8 20 0.71
9 4 0.14
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (8 bp):
CCTATACA
Left flanking sequence: Indices 47826 -- 48325
AGCAACCGTAAAAAGCAATGCGACCACGGGGGTTATCACCGCTGATCTTCCCCCTGGTAAAGCAA
CTGGAAAATCTTGCCGGTAGACCGATGTTATGTGCCAGGGGCTACATGACAGCTAAACAATTGCC
CCGGATTGTGGATTATGCACTACGTGTAGTGAAACCCTATTTGGTGGTCGGTTGGGTTCGGGTTG
GTTTCGGAGCGAGGAGGATTGCGGCCGCGGGCGGTTGGGACTCGGGCGACTTGACCGCGCCCAGG
CCGGCCCCACCCGGTACCCCTCGTGGGGATCGTCCGGGCCCGATGACTCCAGAGCTCACGTGGGA
TTAGTCAACCAGCCTGTGTCCTGCATGGCGCGATCAAAGGTCGGACCCGGTGACATCATCGATTC
GGGGTTAACGCTGGACGACGGGCTCGGTGAAACTGTTGGCTGAATTATAACTGTTGGTCCTGCCG
GTTGAAATGTCGGGCCCACCGTTGTTTTGTCGGTGGGCTCCATCG
Right flanking sequence: Indices 48368 -- 48867
GCACCCCTATACAACCCCCGACATGCTTTAAAGTACATACGTAGCCTACCGCATACCGGTCTCGG
TTCCGACTACGCGACTCCGAGCAGACACCCGCCGCTACCGGGCGTTATTGTCCTGCTGGAGGTTC
TGCGGCAAATTAAGGCGTCGCCCATGCGTCGTGGGTGGTTTAGTCGTACGATGGCCGAGAAAGAT
GCACCCCGGACCCGGGCTTTGGCTGCACGGGTGCGTCGGGTGTGGCTGGTGAGACGCTGGGCGCG
CTGGGGTGGGCACGGTTGTGGTGCTGGGAGTCTGGGGTGGCCGTAGAATTTGCAGCCACCGTCAA
CGAGGGCTACTGGCTCTCCAGCGCGTTCCGACTACCACCGGGCTAAGCCCGCGACATCTTATTAT
CAGACAATTGTAGATCGACCCACTCGAAGCGTCTCGGGGCGCCCCACAATGGTTTAGTCGAGATC
TGACGATACTAAAATAGGCCCGGTTGGTGGCAGCCCGGACATTAA
Found at i:49330 original size:22 final size:22
Alignment explanation
Indices: 49306--49355 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 22
49296 GCATTTCCAT
49306 TTTTCACCACC-TCGCCTACCA
1 TTTTCACCACCTTCGCCTACCA
49327 TTTT-ACCACCTTCGCCTACCA
1 TTTTCACCACCTTCGCCTACCA
49348 TTTTCACC
1 TTTTCACC
49356 TCCCCTTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.22
21 18 0.67
22 3 0.11
ACGTcount: A:0.18, C:0.44, G:0.04, T:0.34
Consensus pattern (22 bp):
TTTTCACCACCTTCGCCTACCA
Left flanking sequence: Indices 48806 -- 49305
ATGGTTTAGTCGAGATCTGACGATACTAAAATAGGCCCGGTTGGTGGCAGCCCGGACATTAAGGG
GCTCCAGGGGGTGCCCGTCAGGAGATATCGGGACGGGTCCGGGGCGCGGTGGTTCCGGTCCCCGG
GTGGGTTGACTACGGGGTTTGGCTCGGAGGTGGCGGTGGGGGCCTGGTGGTCTTGTTTACGAGGT
GTCGGGCTCGTAAACCTGGTGTCGTGGGTGGTTAGGGCTGGATCCGGTTGCGAGCGCGGGCCGTG
AATCTGGTTTGGGGCACTGGGCGACTAAAGCGTTGCGGGCCCCGGTGCTTACTTTAGCGCGGTTG
TAATTGAATTATAGCGGAGGGTGGGGGGACCGGTGAAGGGAGGGAAGACTAAGCCAGCGGGTCGT
GAAAATAAGAGCTTTGCAGACGGAAGGTATGCTTGCACTTGTGGGTTTAGCCTGTGCCCCTTGAA
TGACCCTAAACGCGTCTGCCCCTTCCACAATCCCCGCATTTCCAT
Right flanking sequence: Indices 49356 -- 49855
TCCCCTTCCATTTTTGGTCCGTGCACGACCGCTCTCACCACCGTAGCGCACCGAGCCGCACGCGC
GCTATCCAATAACGTTGCACTCGAATGAAACTTTTTTCCAGCACCTCCGAACACTGACGATGTCG
CTGCCGATTTTACCGTTTACCGAGGCCAATTCGAAGCGGGTGGCGCTGCTCTTCCGCCTGGCGTT
GCGCACTGCCTTCGACCTGCTGCTCAAGTTTGACGCCTACCGCCAGAAGACCATCGAGATCCGTG
CGGCGTTCGAGGCCAACAAGCACCTCAACACCCCGGAGGAGGTGGAGGAGTGCTACGCCAAGGGC
CAGGCCAAGCTTGCCGAGTGGAAGCACCCCGACCCCTACATTCCCCCCTGCCGCCCCGGTGGTAC
CAAGTACCAGAGAAACATCCCCGTGGAGCGCGGTCCCCTTGTCCCTGGCGACTGGTAATCCCCTG
GCGGGTTGGTTGTTGAGGTGCCTCTGCGGAGGAGGCACCGACCTG
Found at i:49336 original size:20 final size:20
Alignment explanation
Indices: 49306--49369 Score: 78
Period size: 21 Copynumber: 3.2 Consensus size: 20
49296 GCATTTCCAT
49306 TTTTCACCACCTCGCCTACCA
1 TTTT-ACCACCTCGCCTACCA
49327 TTTTACCACCTTCGCCTACCA
1 TTTTACCACC-TCGCCTACCA
* *
49348 TTTT--CACCTCCCCTTCCA
1 TTTTACCACCTCGCCTACCA
49366 TTTT
1 TTTT
49370 TGGTCCGTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 12 0.30
19 4 0.10
20 6 0.15
21 18 0.45
ACGTcount: A:0.16, C:0.44, G:0.03, T:0.38
Consensus pattern (20 bp):
TTTTACCACCTCGCCTACCA
Left flanking sequence: Indices 48806 -- 49305
ATGGTTTAGTCGAGATCTGACGATACTAAAATAGGCCCGGTTGGTGGCAGCCCGGACATTAAGGG
GCTCCAGGGGGTGCCCGTCAGGAGATATCGGGACGGGTCCGGGGCGCGGTGGTTCCGGTCCCCGG
GTGGGTTGACTACGGGGTTTGGCTCGGAGGTGGCGGTGGGGGCCTGGTGGTCTTGTTTACGAGGT
GTCGGGCTCGTAAACCTGGTGTCGTGGGTGGTTAGGGCTGGATCCGGTTGCGAGCGCGGGCCGTG
AATCTGGTTTGGGGCACTGGGCGACTAAAGCGTTGCGGGCCCCGGTGCTTACTTTAGCGCGGTTG
TAATTGAATTATAGCGGAGGGTGGGGGGACCGGTGAAGGGAGGGAAGACTAAGCCAGCGGGTCGT
GAAAATAAGAGCTTTGCAGACGGAAGGTATGCTTGCACTTGTGGGTTTAGCCTGTGCCCCTTGAA
TGACCCTAAACGCGTCTGCCCCTTCCACAATCCCCGCATTTCCAT
Right flanking sequence: Indices 49370 -- 49869
TGGTCCGTGCACGACCGCTCTCACCACCGTAGCGCACCGAGCCGCACGCGCGCTATCCAATAACG
TTGCACTCGAATGAAACTTTTTTCCAGCACCTCCGAACACTGACGATGTCGCTGCCGATTTTACC
GTTTACCGAGGCCAATTCGAAGCGGGTGGCGCTGCTCTTCCGCCTGGCGTTGCGCACTGCCTTCG
ACCTGCTGCTCAAGTTTGACGCCTACCGCCAGAAGACCATCGAGATCCGTGCGGCGTTCGAGGCC
AACAAGCACCTCAACACCCCGGAGGAGGTGGAGGAGTGCTACGCCAAGGGCCAGGCCAAGCTTGC
CGAGTGGAAGCACCCCGACCCCTACATTCCCCCCTGCCGCCCCGGTGGTACCAAGTACCAGAGAA
ACATCCCCGTGGAGCGCGGTCCCCTTGTCCCTGGCGACTGGTAATCCCCTGGCGGGTTGGTTGTT
GAGGTGCCTCTGCGGAGGAGGCACCGACCTGAGGTGCCCTGCGGC
Found at i:50268 original size:17 final size:17
Alignment explanation
Indices: 50219--50269 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
50209 CGTAGCAGTG
*
50219 GTGTTCAGTACTCCACT
1 GTGTTCAGTACTCCTCT
*
50236 ATGTTCAGTACTCCTCT
1 GTGTTCAGTACTCCTCT
*
50253 GTGTTCAGTACACCTCT
1 GTGTTCAGTACTCCTCT
50270 CAAGTCTCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37
Consensus pattern (17 bp):
GTGTTCAGTACTCCTCT
Left flanking sequence: Indices 49719 -- 50218
CATTCCCCCCTGCCGCCCCGGTGGTACCAAGTACCAGAGAAACATCCCCGTGGAGCGCGGTCCCC
TTGTCCCTGGCGACTGGTAATCCCCTGGCGGGTTGGTTGTTGAGGTGCCTCTGCGGAGGAGGCAC
CGACCTGAGGTGCCCTGCGGCACGCTTTGCATTATAATAAACATTAGAGAAGAGTAAGTTGGGAG
TTAGCAATGGAGTAGATGTGGGTTAGAGGTGGTTAGAGCGAGTGTGATGTTGAGCATAGTTTGTG
GGTGTGGTTATCTTACCGCATTGTTGCTAGTAGTGGTAGTGGAGTAGTGGAGGTGGTAGTGGAGG
TAATGGTGGTAGTGGAGGTGTTAGCGTATGTGCAAGTATGTGCACAACGGAGGTGATGGGAAATG
TAGGTAGCTGTCAATTGCGGTAGACGTACCAAGAGTACTGTGTACCGGAGTCCTATTAAGATCAT
TCTATTACCATTTAAAATATTTCTTCCAAAGTCTTCGTAGCAGTG
Right flanking sequence: Indices 50270 -- 50769
CAAGTCTCAGTGTTTTAATACGAGCCAGGCTCGTATTACACCCAAAAACTCTTCTTTAACTCTTC
TCTAACTCTTCTTTAACCCTCCTTGCTGCTCTCACATCGTCCACTGCACCCTTCCGCCCGTTTCC
TGTCACTTCGTGTCCCCCAGACACTCTATTCCCACACCTTTCCCAGAAAACCCTCCAAAACAACT
AAATCGCTCGGGCAACCCCGGAAACCACCCGGTACGAACATTGCTCCGGTCCACCCCGGCTGTTC
TATTATCCCCCCGCGACATTTCGCGACGTAGGACCACTGTTCTATTTTCTACCAACGGGCGTAAC
TCCGAGCTGTCAATGTCGTACGACCCCACACGGCTAGAGCAAGGGACAAAACGCGGGTGCCCGCG
ACATTCCGGGGCCAAACAGCTTCGGCGGCCGACGTGGCAGGGCGAGGAATCCCCGCTGGCCCTTT
CTCTACTCTCCAACCCTCTCCTTTGCTACGTTGAGGCCCCAAAGA
Found at i:50332 original size:11 final size:11
Alignment explanation
Indices: 50316--50351 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
50306 TACACCCAAA
50316 AACTCTTCTTT
1 AACTCTTCTTT
*
50327 AACTCTTCTCT
1 AACTCTTCTTT
50338 AACTCTTCTTT
1 AACTCTTCTTT
50349 AAC
1 AAC
50352 CCTCCTTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (11 bp):
AACTCTTCTTT
Left flanking sequence: Indices 49816 -- 50315
TTGGTTGTTGAGGTGCCTCTGCGGAGGAGGCACCGACCTGAGGTGCCCTGCGGCACGCTTTGCAT
TATAATAAACATTAGAGAAGAGTAAGTTGGGAGTTAGCAATGGAGTAGATGTGGGTTAGAGGTGG
TTAGAGCGAGTGTGATGTTGAGCATAGTTTGTGGGTGTGGTTATCTTACCGCATTGTTGCTAGTA
GTGGTAGTGGAGTAGTGGAGGTGGTAGTGGAGGTAATGGTGGTAGTGGAGGTGTTAGCGTATGTG
CAAGTATGTGCACAACGGAGGTGATGGGAAATGTAGGTAGCTGTCAATTGCGGTAGACGTACCAA
GAGTACTGTGTACCGGAGTCCTATTAAGATCATTCTATTACCATTTAAAATATTTCTTCCAAAGT
CTTCGTAGCAGTGGTGTTCAGTACTCCACTATGTTCAGTACTCCTCTGTGTTCAGTACACCTCTC
AAGTCTCAGTGTTTTAATACGAGCCAGGCTCGTATTACACCCAAA
Right flanking sequence: Indices 50352 -- 50851
CCTCCTTGCTGCTCTCACATCGTCCACTGCACCCTTCCGCCCGTTTCCTGTCACTTCGTGTCCCC
CAGACACTCTATTCCCACACCTTTCCCAGAAAACCCTCCAAAACAACTAAATCGCTCGGGCAACC
CCGGAAACCACCCGGTACGAACATTGCTCCGGTCCACCCCGGCTGTTCTATTATCCCCCCGCGAC
ATTTCGCGACGTAGGACCACTGTTCTATTTTCTACCAACGGGCGTAACTCCGAGCTGTCAATGTC
GTACGACCCCACACGGCTAGAGCAAGGGACAAAACGCGGGTGCCCGCGACATTCCGGGGCCAAAC
AGCTTCGGCGGCCGACGTGGCAGGGCGAGGAATCCCCGCTGGCCCTTTCTCTACTCTCCAACCCT
CTCCTTTGCTACGTTGAGGCCCCAAAGAGCCCCCCTTTTGATTGTTTTCGTTACCCCAGACACCT
CGTAAATTCCCTACAGAATCAGGGACGGCCCTAGCCAAAACGCCG
Found at i:51690 original size:15 final size:15
Alignment explanation
Indices: 51652--51700 Score: 71
Period size: 15 Copynumber: 3.1 Consensus size: 15
51642 GCCCCAACCC
51652 CGGGGCAGGCACCAA
1 CGGGGCAGGCACCAA
51667 CCTCGGGGCAGGCACCAA
1 ---CGGGGCAGGCACCAA
51685 CGGGGCAGGCACCAA
1 CGGGGCAGGCACCAA
51700 C
1 C
51701 CCCGGGGCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
15 16 0.52
18 15 0.48
ACGTcount: A:0.24, C:0.37, G:0.37, T:0.02
Consensus pattern (15 bp):
CGGGGCAGGCACCAA
Left flanking sequence: Indices 51152 -- 51651
CCTCCCCCGGCCCGCACCACCCACTTGTTGGACGCGGCCCCGAGCACGGTGCCCCCGCCCGCTGC
CAGCCCCGCCCCCGCCCCCGCCGACAAGCGCTGGCACGAGCTCGACCCCATTGGCGACACCCTTC
GCCGCCTCCGCCTGGCCGACTACCGCCAATGGCTCCACCACGTCCGCCACACCGACTACCACCAG
TTGCTCGATCGCGTGGGCACCGCGGCCACCGACTTTTGTGACGAGCCCCGGGTGACCCCCGGGGT
GGCGGCGGCGCTCGCGGTGGTGGTGGTGGTCGCGGTGGTGCTCCGCAAACGGGGGCGCCCGCCCC
GCAAGACGGGGCCCAGGGTGGTGATCAACGGCAAGGCGGTGGCCATCTCGGCGCCCCAACACAAC
ACCTTCCGCCATGTGGCAGGCACAAACAACGCAGCGGAGGGTGCGGTGCCGGTGCAGGTGTACAC
CAGCACCGCCAGCACCGGCACTGGCACGGGCACCGGCCCCAACCC
Right flanking sequence: Indices 51701 -- 52200
CCCGGGGCGAGCACCGGCGCCAACCCCGGGGCAAGCACCTACACACCCCTCGCCGACCCCCTCGC
CGACCTCAAGTTCGAGCCCCATACCGACGACGAGGACACCCTCCCGCCCGCCAGCGAGTTTTCAC
TGGCGGGGGCGCTGACCCTCCCTCTGGAGATCGACGGGTTCGCCCAGGGCGACGCCCCCTGGACA
CTGGGCACGAGCTGCGCCCGCCTCTTTGCCCCGAAGGAGGGGGTGGCCCGCATCGACGGGTCGGA
CGAGGTGGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCG
AGGTGGCGGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCC
GAGGTGGCGGTGGCGCGCCCGGTGGTGGTGGCGGCGGTGGTCGGGGAGACGTCACGGGGCGACCC
CGGGGCAGCGACCCCCGGGGCCGCCCTCCGCCCCGTGGACACCGA
Found at i:51715 original size:18 final size:18
Alignment explanation
Indices: 51645--51708 Score: 98
Period size: 18 Copynumber: 3.7 Consensus size: 18
51635 GGCACCGGCC
51645 CCAACCCCGGGGCAGGCA
1 CCAACCCCGGGGCAGGCA
*
51663 CCAACCTCGGGGCAGGCA
1 CCAACCCCGGGGCAGGCA
51681 CCAA---CGGGGCAGGCA
1 CCAACCCCGGGGCAGGCA
51696 CCAACCCCGGGGC
1 CCAACCCCGGGGC
51709 GAGCACCGGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
15 15 0.36
18 27 0.64
ACGTcount: A:0.22, C:0.42, G:0.34, T:0.02
Consensus pattern (18 bp):
CCAACCCCGGGGCAGGCA
Left flanking sequence: Indices 51145 -- 51644
ACTCCCTCCTCCCCCGGCCCGCACCACCCACTTGTTGGACGCGGCCCCGAGCACGGTGCCCCCGC
CCGCTGCCAGCCCCGCCCCCGCCCCCGCCGACAAGCGCTGGCACGAGCTCGACCCCATTGGCGAC
ACCCTTCGCCGCCTCCGCCTGGCCGACTACCGCCAATGGCTCCACCACGTCCGCCACACCGACTA
CCACCAGTTGCTCGATCGCGTGGGCACCGCGGCCACCGACTTTTGTGACGAGCCCCGGGTGACCC
CCGGGGTGGCGGCGGCGCTCGCGGTGGTGGTGGTGGTCGCGGTGGTGCTCCGCAAACGGGGGCGC
CCGCCCCGCAAGACGGGGCCCAGGGTGGTGATCAACGGCAAGGCGGTGGCCATCTCGGCGCCCCA
ACACAACACCTTCCGCCATGTGGCAGGCACAAACAACGCAGCGGAGGGTGCGGTGCCGGTGCAGG
TGTACACCAGCACCGCCAGCACCGGCACTGGCACGGGCACCGGCC
Right flanking sequence: Indices 51709 -- 52208
GAGCACCGGCGCCAACCCCGGGGCAAGCACCTACACACCCCTCGCCGACCCCCTCGCCGACCTCA
AGTTCGAGCCCCATACCGACGACGAGGACACCCTCCCGCCCGCCAGCGAGTTTTCACTGGCGGGG
GCGCTGACCCTCCCTCTGGAGATCGACGGGTTCGCCCAGGGCGACGCCCCCTGGACACTGGGCAC
GAGCTGCGCCCGCCTCTTTGCCCCGAAGGAGGGGGTGGCCCGCATCGACGGGTCGGACGAGGTGG
TGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGTGGCG
GTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGTGGC
GGTGGCGCGCCCGGTGGTGGTGGCGGCGGTGGTCGGGGAGACGTCACGGGGCGACCCCGGGGCAG
CGACCCCCGGGGCCGCCCTCCGCCCCGTGGACACCGAGGAGACCG
Found at i:51763 original size:12 final size:12
Alignment explanation
Indices: 51746--51770 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51736 CACCTACACA
51746 CCCCTCGCCGAC
1 CCCCTCGCCGAC
51758 CCCCTCGCCGAC
1 CCCCTCGCCGAC
51770 C
1 C
51771 TCAAGTTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.68, G:0.16, T:0.08
Consensus pattern (12 bp):
CCCCTCGCCGAC
Left flanking sequence: Indices 51246 -- 51745
GCTGGCACGAGCTCGACCCCATTGGCGACACCCTTCGCCGCCTCCGCCTGGCCGACTACCGCCAA
TGGCTCCACCACGTCCGCCACACCGACTACCACCAGTTGCTCGATCGCGTGGGCACCGCGGCCAC
CGACTTTTGTGACGAGCCCCGGGTGACCCCCGGGGTGGCGGCGGCGCTCGCGGTGGTGGTGGTGG
TCGCGGTGGTGCTCCGCAAACGGGGGCGCCCGCCCCGCAAGACGGGGCCCAGGGTGGTGATCAAC
GGCAAGGCGGTGGCCATCTCGGCGCCCCAACACAACACCTTCCGCCATGTGGCAGGCACAAACAA
CGCAGCGGAGGGTGCGGTGCCGGTGCAGGTGTACACCAGCACCGCCAGCACCGGCACTGGCACGG
GCACCGGCCCCAACCCCGGGGCAGGCACCAACCTCGGGGCAGGCACCAACGGGGCAGGCACCAAC
CCCGGGGCGAGCACCGGCGCCAACCCCGGGGCAAGCACCTACACA
Right flanking sequence: Indices 51771 -- 52270
TCAAGTTCGAGCCCCATACCGACGACGAGGACACCCTCCCGCCCGCCAGCGAGTTTTCACTGGCG
GGGGCGCTGACCCTCCCTCTGGAGATCGACGGGTTCGCCCAGGGCGACGCCCCCTGGACACTGGG
CACGAGCTGCGCCCGCCTCTTTGCCCCGAAGGAGGGGGTGGCCCGCATCGACGGGTCGGACGAGG
TGGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGTG
GCGGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGT
GGCGGTGGCGCGCCCGGTGGTGGTGGCGGCGGTGGTCGGGGAGACGTCACGGGGCGACCCCGGGG
CAGCGACCCCCGGGGCCGCCCTCCGCCCCGTGGACACCGAGGAGACCGAGGTGGAGGCGGTGGCC
TCCGACGACGACGACTACGTGGAGGACGCCACCCTCGACGCGGTG
Found at i:52064 original size:66 final size:66
Alignment explanation
Indices: 51967--52106 Score: 280
Period size: 66 Copynumber: 2.1 Consensus size: 66
51957 CGGACGAGGT
51967 GGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGTGG
1 GGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGTGG
52032 C
66 C
52033 GGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGTGG
1 GGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGTGG
52098 C
66 C
52099 GGTGGCGC
1 GGTGGCGC
52107 GCCCGGTGGT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 74 1.00
ACGTcount: A:0.19, C:0.30, G:0.41, T:0.11
Consensus pattern (66 bp):
GGTGGCGCTCTCGCAGACCATCACCAACGACACCGACGAGTGGGCGGAGGAGGTGCCCGAGGTGG
C
Left flanking sequence: Indices 51467 -- 51966
CGCCCGCCCCGCAAGACGGGGCCCAGGGTGGTGATCAACGGCAAGGCGGTGGCCATCTCGGCGCC
CCAACACAACACCTTCCGCCATGTGGCAGGCACAAACAACGCAGCGGAGGGTGCGGTGCCGGTGC
AGGTGTACACCAGCACCGCCAGCACCGGCACTGGCACGGGCACCGGCCCCAACCCCGGGGCAGGC
ACCAACCTCGGGGCAGGCACCAACGGGGCAGGCACCAACCCCGGGGCGAGCACCGGCGCCAACCC
CGGGGCAAGCACCTACACACCCCTCGCCGACCCCCTCGCCGACCTCAAGTTCGAGCCCCATACCG
ACGACGAGGACACCCTCCCGCCCGCCAGCGAGTTTTCACTGGCGGGGGCGCTGACCCTCCCTCTG
GAGATCGACGGGTTCGCCCAGGGCGACGCCCCCTGGACACTGGGCACGAGCTGCGCCCGCCTCTT
TGCCCCGAAGGAGGGGGTGGCCCGCATCGACGGGTCGGACGAGGT
Right flanking sequence: Indices 52107 -- 52606
GCCCGGTGGTGGTGGCGGCGGTGGTCGGGGAGACGTCACGGGGCGACCCCGGGGCAGCGACCCCC
GGGGCCGCCCTCCGCCCCGTGGACACCGAGGAGACCGAGGTGGAGGCGGTGGCCTCCGACGACGA
CGACTACGTGGAGGACGCCACCCTCGACGCGGTGGTGCTCCGCGAGGTGGCGTACGACCCCGTGC
CCGGCGCTGGCGACGAGGACGTGGACGTGGCCTCCGACACCGAGATCGCCCCCTTGGCGCGGGAG
CCCCTGCTCTTGGCGCTGCCGCCCCGGCCGTCGTCGCTGGCGCTGGCGTCCTCCGGGGACTCCGC
GGGGCGCGACCCCACGTCGCCCATGTCGCAGCTCCTCCGGATGGAGGCGCTGGTCAACGGGCACC
ACGAGCTGGCGCCCGAGCTCTACGAGGCCAAGCTCTACGCCAAGGGCCAGGACCTCTACAGCGAT
CTCTTCCGGCGCAACGGGTCGGCGGCCTCGTTGAACGGGTTGTTT
Found at i:52643 original size:13 final size:13
Alignment explanation
Indices: 52625--52650 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52615 AGATGACGGC
52625 GCGAGGGGGGCGA
1 GCGAGGGGGGCGA
52638 GCGAGGGGGGCGA
1 GCGAGGGGGGCGA
52651 CAGCCTCCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.69, T:0.00
Consensus pattern (13 bp):
GCGAGGGGGGCGA
Left flanking sequence: Indices 52125 -- 52624
CGGTGGTCGGGGAGACGTCACGGGGCGACCCCGGGGCAGCGACCCCCGGGGCCGCCCTCCGCCCC
GTGGACACCGAGGAGACCGAGGTGGAGGCGGTGGCCTCCGACGACGACGACTACGTGGAGGACGC
CACCCTCGACGCGGTGGTGCTCCGCGAGGTGGCGTACGACCCCGTGCCCGGCGCTGGCGACGAGG
ACGTGGACGTGGCCTCCGACACCGAGATCGCCCCCTTGGCGCGGGAGCCCCTGCTCTTGGCGCTG
CCGCCCCGGCCGTCGTCGCTGGCGCTGGCGTCCTCCGGGGACTCCGCGGGGCGCGACCCCACGTC
GCCCATGTCGCAGCTCCTCCGGATGGAGGCGCTGGTCAACGGGCACCACGAGCTGGCGCCCGAGC
TCTACGAGGCCAAGCTCTACGCCAAGGGCCAGGACCTCTACAGCGATCTCTTCCGGCGCAACGGG
TCGGCGGCCTCGTTGAACGGGTTGTTTGCGTTCGAAGATGACGGC
Right flanking sequence: Indices 52651 -- 53150
CAGCCTCCCCTCGGATCCCATCGACTTGTCCCCGATCAAGCTGTCCCCGGAGGAGCCTCTGGGGG
CGTTCCCTCCGAGCTCCCCGCGGGCCTCCTCTGTCTCGCCCCCGGCCTCCTCTGTCTCCCCTCCG
GGCTCCTCGGCCTCCCCTCCGGGCTCCCCCCTGGCCATCCCTCCCGACGCCACCCTCCTCTCGCC
GCCGCGCGCCTCCCTCCGCGCCTCCCCCTCGCGCCCCACGCCCCCGACCCTCACCCTCATCCCCA
CCGTCGACAACTCCCCCTCGCCGTCGCTCTCGAGCCCGCGGTCGGAGGGCCGCCTCGACGCCAAG
CCTGACGGCCTCCTGCCGTTCCTCACCACCTCGCGCTCGCCCCCGCAGTCGCCGTTCGCGGCGTC
GCTCCTCAAGCTGAGCGTCACCTCCGCGGTCACCGCCCCGGCCCCGGGCACGCTGGCGCAGAGCA
CCACCGGCACCACCCCGCCGGTGCTCGACCCCAGCCACCCCCTCG
Found at i:52764 original size:21 final size:21
Alignment explanation
Indices: 52729--52807 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
52719 TCCCTCCGAG
* *
52729 CTCCCCGCGGGCCTCCTCTGT
1 CTCCCCTCCGGCCTCCTCTGT
52750 CTCGCCC-CCGGCCTCCTCTGT
1 CTC-CCCTCCGGCCTCCTCTGT
* * *
52771 CTCCCCTCCGGGCTCCTCGGC
1 CTCCCCTCCGGCCTCCTCTGT
*
52792 CTCCCCTCCGGGCTCC
1 CTCCCCTCCGGCCTCC
52808 CCCCTGGCCA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
20 3 0.06
21 46 0.88
22 3 0.06
ACGTcount: A:0.00, C:0.57, G:0.22, T:0.22
Consensus pattern (21 bp):
CTCCCCTCCGGCCTCCTCTGT
Left flanking sequence: Indices 52229 -- 52728
GACGACGACGACTACGTGGAGGACGCCACCCTCGACGCGGTGGTGCTCCGCGAGGTGGCGTACGA
CCCCGTGCCCGGCGCTGGCGACGAGGACGTGGACGTGGCCTCCGACACCGAGATCGCCCCCTTGG
CGCGGGAGCCCCTGCTCTTGGCGCTGCCGCCCCGGCCGTCGTCGCTGGCGCTGGCGTCCTCCGGG
GACTCCGCGGGGCGCGACCCCACGTCGCCCATGTCGCAGCTCCTCCGGATGGAGGCGCTGGTCAA
CGGGCACCACGAGCTGGCGCCCGAGCTCTACGAGGCCAAGCTCTACGCCAAGGGCCAGGACCTCT
ACAGCGATCTCTTCCGGCGCAACGGGTCGGCGGCCTCGTTGAACGGGTTGTTTGCGTTCGAAGAT
GACGGCGCGAGGGGGGCGAGCGAGGGGGGCGACAGCCTCCCCTCGGATCCCATCGACTTGTCCCC
GATCAAGCTGTCCCCGGAGGAGCCTCTGGGGGCGTTCCCTCCGAG
Right flanking sequence: Indices 52808 -- 53307
CCCCTGGCCATCCCTCCCGACGCCACCCTCCTCTCGCCGCCGCGCGCCTCCCTCCGCGCCTCCCC
CTCGCGCCCCACGCCCCCGACCCTCACCCTCATCCCCACCGTCGACAACTCCCCCTCGCCGTCGC
TCTCGAGCCCGCGGTCGGAGGGCCGCCTCGACGCCAAGCCTGACGGCCTCCTGCCGTTCCTCACC
ACCTCGCGCTCGCCCCCGCAGTCGCCGTTCGCGGCGTCGCTCCTCAAGCTGAGCGTCACCTCCGC
GGTCACCGCCCCGGCCCCGGGCACGCTGGCGCAGAGCACCACCGGCACCACCCCGCCGGTGCTCG
ACCCCAGCCACCCCCTCGCGGGGTTCCCCGACTTGTACCACCACGCGCGCCCCGTGGCCACCGAC
GTCATCGCCCAGTACCAGTGTCTCATCTCGTTCCCCGAGCGCTCGCACTACGAGATCATGTACCG
CCAGTTGGAGCCGCTCTTGGACTACATGGAGCACCCCAACTTTGC
Found at i:53420 original size:9 final size:9
Alignment explanation
Indices: 53406--53464 Score: 64
Period size: 9 Copynumber: 6.1 Consensus size: 9
53396 ACGGGTGCAG
53406 CAGGGCACA
1 CAGGGCACA
53415 CAGGGCACA
1 CAGGGCACA
53424 CAGGGCACA
1 CAGGGCACA
*
53433 TAGGTGCACA
1 CAGG-GCACA
*
53443 CCCAGGACACA
1 --CAGGGCACA
53454 CAGGTGCACA
1 CAGG-GCACA
53464 C
1 C
53465 CCAGGACACC
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
9 25 0.60
10 10 0.24
11 4 0.10
12 3 0.07
ACGTcount: A:0.32, C:0.34, G:0.29, T:0.05
Consensus pattern (9 bp):
CAGGGCACA
Left flanking sequence: Indices 52906 -- 53405
CCCCACCGTCGACAACTCCCCCTCGCCGTCGCTCTCGAGCCCGCGGTCGGAGGGCCGCCTCGACG
CCAAGCCTGACGGCCTCCTGCCGTTCCTCACCACCTCGCGCTCGCCCCCGCAGTCGCCGTTCGCG
GCGTCGCTCCTCAAGCTGAGCGTCACCTCCGCGGTCACCGCCCCGGCCCCGGGCACGCTGGCGCA
GAGCACCACCGGCACCACCCCGCCGGTGCTCGACCCCAGCCACCCCCTCGCGGGGTTCCCCGACT
TGTACCACCACGCGCGCCCCGTGGCCACCGACGTCATCGCCCAGTACCAGTGTCTCATCTCGTTC
CCCGAGCGCTCGCACTACGAGATCATGTACCGCCAGTTGGAGCCGCTCTTGGACTACATGGAGCA
CCCCAACTTTGCCCTGGAGCCCGCGAGAGCCGCTTATATCAACCTCGTGGTCGAGCTCTTGATGC
GCCACGACCGGGGCGAGGCAAAGGAGCACGCGGCCACGGGTGCAG
Right flanking sequence: Indices 53465 -- 53964
CCAGGACACCAGCACCAGGTCCACGCGCACCAGGCCCACGCGCACCCGGACGCACCCGTCCATGT
ACACTCCCACCCGGGCAGCCAACCGGGCAGCCAACCGGGCAGCCACCCGGGCCAGTCTGGGAACC
AGCCGGGTAGCCAGCGAGACAGCCAGGGCAACGAGAGCGACCACAACCGTGGGCTGGACCTGGAG
CTGACCCCACCAGCGGACTCGGTGCACCAGCGCCACCTCAAGCGAGCACTCGCTCTCTTCTTCGA
CGAGGGCGTGGCCCCGCCCCAGGGGACGCTGAGAGCCACGTTGACGCCGCTGGCGCTGAGTGCCA
CCCTCAAGACGCTCGTGGCCCTGTTCCCGCCCGCCACCACCTTCCAGCAGGTGTTCATCCCGCAC
TTGCGCCGGGTGTTCTTGTTCCTGGTGGGAGCCCTGGGCCTGGCCAAGCAGCAGATGGCACTCCT
GGTGCTCAAGGAGTACCTCCGGGTGCACGAGGCGGCCGTGGTGGC
Found at i:53453 original size:21 final size:21
Alignment explanation
Indices: 53406--53473 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
53396 ACGGGTGCAG
*
53406 CAGGGCACACAGG-GCACA--
1 CAGGACACACAGGTGCACACC
* *
53424 CAGGGCACATAGGTGCACACC
1 CAGGACACACAGGTGCACACC
53445 CAGGACACACAGGTGCACACC
1 CAGGACACACAGGTGCACACC
53466 CAGGACAC
1 CAGGACAC
53474 CAGCACCAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
18 12 0.27
19 5 0.11
21 27 0.61
ACGTcount: A:0.32, C:0.35, G:0.28, T:0.04
Consensus pattern (21 bp):
CAGGACACACAGGTGCACACC
Left flanking sequence: Indices 52906 -- 53405
CCCCACCGTCGACAACTCCCCCTCGCCGTCGCTCTCGAGCCCGCGGTCGGAGGGCCGCCTCGACG
CCAAGCCTGACGGCCTCCTGCCGTTCCTCACCACCTCGCGCTCGCCCCCGCAGTCGCCGTTCGCG
GCGTCGCTCCTCAAGCTGAGCGTCACCTCCGCGGTCACCGCCCCGGCCCCGGGCACGCTGGCGCA
GAGCACCACCGGCACCACCCCGCCGGTGCTCGACCCCAGCCACCCCCTCGCGGGGTTCCCCGACT
TGTACCACCACGCGCGCCCCGTGGCCACCGACGTCATCGCCCAGTACCAGTGTCTCATCTCGTTC
CCCGAGCGCTCGCACTACGAGATCATGTACCGCCAGTTGGAGCCGCTCTTGGACTACATGGAGCA
CCCCAACTTTGCCCTGGAGCCCGCGAGAGCCGCTTATATCAACCTCGTGGTCGAGCTCTTGATGC
GCCACGACCGGGGCGAGGCAAAGGAGCACGCGGCCACGGGTGCAG
Right flanking sequence: Indices 53474 -- 53973
CAGCACCAGGTCCACGCGCACCAGGCCCACGCGCACCCGGACGCACCCGTCCATGTACACTCCCA
CCCGGGCAGCCAACCGGGCAGCCAACCGGGCAGCCACCCGGGCCAGTCTGGGAACCAGCCGGGTA
GCCAGCGAGACAGCCAGGGCAACGAGAGCGACCACAACCGTGGGCTGGACCTGGAGCTGACCCCA
CCAGCGGACTCGGTGCACCAGCGCCACCTCAAGCGAGCACTCGCTCTCTTCTTCGACGAGGGCGT
GGCCCCGCCCCAGGGGACGCTGAGAGCCACGTTGACGCCGCTGGCGCTGAGTGCCACCCTCAAGA
CGCTCGTGGCCCTGTTCCCGCCCGCCACCACCTTCCAGCAGGTGTTCATCCCGCACTTGCGCCGG
GTGTTCTTGTTCCTGGTGGGAGCCCTGGGCCTGGCCAAGCAGCAGATGGCACTCCTGGTGCTCAA
GGAGTACCTCCGGGTGCACGAGGCGGCCGTGGTGGCCGAGATCGC
Found at i:53494 original size:15 final size:15
Alignment explanation
Indices: 53476--53510 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
53466 CAGGACACCA
*
53476 GCACCAGGTCCACGC
1 GCACCAGGCCCACGC
53491 GCACCAGGCCCACGC
1 GCACCAGGCCCACGC
53506 GCACC
1 GCACC
53511 CGGACGCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.51, G:0.26, T:0.03
Consensus pattern (15 bp):
GCACCAGGCCCACGC
Left flanking sequence: Indices 52976 -- 53475
CCTGACGGCCTCCTGCCGTTCCTCACCACCTCGCGCTCGCCCCCGCAGTCGCCGTTCGCGGCGTC
GCTCCTCAAGCTGAGCGTCACCTCCGCGGTCACCGCCCCGGCCCCGGGCACGCTGGCGCAGAGCA
CCACCGGCACCACCCCGCCGGTGCTCGACCCCAGCCACCCCCTCGCGGGGTTCCCCGACTTGTAC
CACCACGCGCGCCCCGTGGCCACCGACGTCATCGCCCAGTACCAGTGTCTCATCTCGTTCCCCGA
GCGCTCGCACTACGAGATCATGTACCGCCAGTTGGAGCCGCTCTTGGACTACATGGAGCACCCCA
ACTTTGCCCTGGAGCCCGCGAGAGCCGCTTATATCAACCTCGTGGTCGAGCTCTTGATGCGCCAC
GACCGGGGCGAGGCAAAGGAGCACGCGGCCACGGGTGCAGCAGGGCACACAGGGCACACAGGGCA
CATAGGTGCACACCCAGGACACACAGGTGCACACCCAGGACACCA
Right flanking sequence: Indices 53511 -- 54010
CGGACGCACCCGTCCATGTACACTCCCACCCGGGCAGCCAACCGGGCAGCCAACCGGGCAGCCAC
CCGGGCCAGTCTGGGAACCAGCCGGGTAGCCAGCGAGACAGCCAGGGCAACGAGAGCGACCACAA
CCGTGGGCTGGACCTGGAGCTGACCCCACCAGCGGACTCGGTGCACCAGCGCCACCTCAAGCGAG
CACTCGCTCTCTTCTTCGACGAGGGCGTGGCCCCGCCCCAGGGGACGCTGAGAGCCACGTTGACG
CCGCTGGCGCTGAGTGCCACCCTCAAGACGCTCGTGGCCCTGTTCCCGCCCGCCACCACCTTCCA
GCAGGTGTTCATCCCGCACTTGCGCCGGGTGTTCTTGTTCCTGGTGGGAGCCCTGGGCCTGGCCA
AGCAGCAGATGGCACTCCTGGTGCTCAAGGAGTACCTCCGGGTGCACGAGGCGGCCGTGGTGGCC
GAGATCGCCGAGCAGCCGCTCGCTGACACCACCGCCGCCACCGTG
Found at i:53557 original size:12 final size:12
Alignment explanation
Indices: 53540--53581 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
53530 ACACTCCCAC
53540 CCGGGCAGCCAA
1 CCGGGCAGCCAA
53552 CCGGGCAGCCAA
1 CCGGGCAGCCAA
*
53564 CCGGGCAGCCAC
1 CCGGGCAGCCAA
53576 CCGGGC
1 CCGGGC
53582 CAGTCTGGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.19, C:0.45, G:0.36, T:0.00
Consensus pattern (12 bp):
CCGGGCAGCCAA
Left flanking sequence: Indices 53040 -- 53539
CGCTCCTCAAGCTGAGCGTCACCTCCGCGGTCACCGCCCCGGCCCCGGGCACGCTGGCGCAGAGC
ACCACCGGCACCACCCCGCCGGTGCTCGACCCCAGCCACCCCCTCGCGGGGTTCCCCGACTTGTA
CCACCACGCGCGCCCCGTGGCCACCGACGTCATCGCCCAGTACCAGTGTCTCATCTCGTTCCCCG
AGCGCTCGCACTACGAGATCATGTACCGCCAGTTGGAGCCGCTCTTGGACTACATGGAGCACCCC
AACTTTGCCCTGGAGCCCGCGAGAGCCGCTTATATCAACCTCGTGGTCGAGCTCTTGATGCGCCA
CGACCGGGGCGAGGCAAAGGAGCACGCGGCCACGGGTGCAGCAGGGCACACAGGGCACACAGGGC
ACATAGGTGCACACCCAGGACACACAGGTGCACACCCAGGACACCAGCACCAGGTCCACGCGCAC
CAGGCCCACGCGCACCCGGACGCACCCGTCCATGTACACTCCCAC
Right flanking sequence: Indices 53582 -- 54081
CAGTCTGGGAACCAGCCGGGTAGCCAGCGAGACAGCCAGGGCAACGAGAGCGACCACAACCGTGG
GCTGGACCTGGAGCTGACCCCACCAGCGGACTCGGTGCACCAGCGCCACCTCAAGCGAGCACTCG
CTCTCTTCTTCGACGAGGGCGTGGCCCCGCCCCAGGGGACGCTGAGAGCCACGTTGACGCCGCTG
GCGCTGAGTGCCACCCTCAAGACGCTCGTGGCCCTGTTCCCGCCCGCCACCACCTTCCAGCAGGT
GTTCATCCCGCACTTGCGCCGGGTGTTCTTGTTCCTGGTGGGAGCCCTGGGCCTGGCCAAGCAGC
AGATGGCACTCCTGGTGCTCAAGGAGTACCTCCGGGTGCACGAGGCGGCCGTGGTGGCCGAGATC
GCCGAGCAGCCGCTCGCTGACACCACCGCCGCCACCGTGTTGGCCACCCTCACCGACGTCATCGC
GGTGGTGAAGCGCCAGCTGCCGTCCACCCTGGCCATCCCGCGCAA
Found at i:54390 original size:9 final size:10
Alignment explanation
Indices: 54366--54428 Score: 65
Period size: 10 Copynumber: 5.9 Consensus size: 10
54356 GGAGACGAAG
*
54366 TAGAGGGGAT
1 TAGAGTGGAT
54376 TAGAGTGGA-
1 TAGAGTGGAT
54385 TAGAGTGGAT
1 TAGAGTGGAT
54395 TAGAGTGGATGAT
1 TAGAGT-G--GAT
54408 TAGAGTGGAT
1 TAGAGTGGAT
54418 AGTAGAGTGGA
1 --TAGAGTGGA
54429 CAATGTATTA
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
9 9 0.20
10 17 0.37
11 1 0.02
12 10 0.22
13 9 0.20
ACGTcount: A:0.32, C:0.00, G:0.43, T:0.25
Consensus pattern (10 bp):
TAGAGTGGAT
Left flanking sequence: Indices 53866 -- 54365
GTTCTTGTTCCTGGTGGGAGCCCTGGGCCTGGCCAAGCAGCAGATGGCACTCCTGGTGCTCAAGG
AGTACCTCCGGGTGCACGAGGCGGCCGTGGTGGCCGAGATCGCCGAGCAGCCGCTCGCTGACACC
ACCGCCGCCACCGTGTTGGCCACCCTCACCGACGTCATCGCGGTGGTGAAGCGCCAGCTGCCGTC
CACCCTGGCCATCCCGCGCAAATACACCGCGGGACTGCCACTGAAGGTGCTGCTGCCCCAGAAGC
TGCTCAACATGGCCGCGCAGAACCAGTGGCTGCCCGTGGCCGCGCTGTTGGCCGAGCTCTACTTG
CTGTTGCTGCGGATGCTCTTGAAGTCCGACAAGGTCCCGGAAGAGAAGAAGGAGGAGTTGGTGCA
CGGGTGTCTCGGGTACTTGCACACCCACATGGTGACGCTCACCACGATCGACCCGGTGACGTTTT
TGCCGCTGGCGGTGGACGACGACGTGGAGTAGGGTGGAGACGAAG
Right flanking sequence: Indices 54429 -- 54928
CAATGTATTAATAGACGTTACGGTTAGTAAAGTGGACGTGACGGCTGGGGGGCCGCGAGCGGCGC
CCCCCAGACCCCCCAACGCCTTCTTGTGTGTTGGGTTGGGTGGTTTGGTGGTGCTCGTGTTCTTG
GTTTGTGGCTCTTTGCTCGGAGAGAATTGCGGTAGTTGAGTTTTCATTGAGACTCTAAAAGCATT
GATAAAGAAGAAACATATTGGTCGAGGTGCTATATAGGCTATTTTAACTAGGTTTGTGGCCCGCA
AACCCGGTCTTTCCGCGCTTTTGGGTGCTCTGCGGGTGGCTGCAAATTTGGTCAGAATTGCCTAT
TTGGGTCGACAAAGGCACCCGTAGTAAAACAAATCTGCCCGATTGAGAGCGCAATGGACCACCAC
AGCCACCGCGTAGTAAATCAAACCTACCCGATTGAGAACGCAATGGACCTCCACAGTCTCAAAAA
GTCCTCTTTGGGACTCCAATGGCCCCCCACACCCGAGCTATATAA
Found at i:54394 original size:19 final size:19
Alignment explanation
Indices: 54366--54404 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
54356 GGAGACGAAG
54366 TAGAGGGGATTAGAGTGGA
1 TAGAGGGGATTAGAGTGGA
*
54385 TAGAGTGGATTAGAGTGGA
1 TAGAGGGGATTAGAGTGGA
54404 T
1 T
54405 GATTAGAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.44, T:0.26
Consensus pattern (19 bp):
TAGAGGGGATTAGAGTGGA
Left flanking sequence: Indices 53866 -- 54365
GTTCTTGTTCCTGGTGGGAGCCCTGGGCCTGGCCAAGCAGCAGATGGCACTCCTGGTGCTCAAGG
AGTACCTCCGGGTGCACGAGGCGGCCGTGGTGGCCGAGATCGCCGAGCAGCCGCTCGCTGACACC
ACCGCCGCCACCGTGTTGGCCACCCTCACCGACGTCATCGCGGTGGTGAAGCGCCAGCTGCCGTC
CACCCTGGCCATCCCGCGCAAATACACCGCGGGACTGCCACTGAAGGTGCTGCTGCCCCAGAAGC
TGCTCAACATGGCCGCGCAGAACCAGTGGCTGCCCGTGGCCGCGCTGTTGGCCGAGCTCTACTTG
CTGTTGCTGCGGATGCTCTTGAAGTCCGACAAGGTCCCGGAAGAGAAGAAGGAGGAGTTGGTGCA
CGGGTGTCTCGGGTACTTGCACACCCACATGGTGACGCTCACCACGATCGACCCGGTGACGTTTT
TGCCGCTGGCGGTGGACGACGACGTGGAGTAGGGTGGAGACGAAG
Right flanking sequence: Indices 54405 -- 54904
GATTAGAGTGGATAGTAGAGTGGACAATGTATTAATAGACGTTACGGTTAGTAAAGTGGACGTGA
CGGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCTTGTGTGTTGGGTTGGGT
GGTTTGGTGGTGCTCGTGTTCTTGGTTTGTGGCTCTTTGCTCGGAGAGAATTGCGGTAGTTGAGT
TTTCATTGAGACTCTAAAAGCATTGATAAAGAAGAAACATATTGGTCGAGGTGCTATATAGGCTA
TTTTAACTAGGTTTGTGGCCCGCAAACCCGGTCTTTCCGCGCTTTTGGGTGCTCTGCGGGTGGCT
GCAAATTTGGTCAGAATTGCCTATTTGGGTCGACAAAGGCACCCGTAGTAAAACAAATCTGCCCG
ATTGAGAGCGCAATGGACCACCACAGCCACCGCGTAGTAAATCAAACCTACCCGATTGAGAACGC
AATGGACCTCCACAGTCTCAAAAAGTCCTCTTTGGGACTCCAATG
Found at i:54410 original size:13 final size:13
Alignment explanation
Indices: 54392--54428 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
54382 GGATAGAGTG
54392 GATTAGAGTGGAT
1 GATTAGAGTGGAT
54405 GATTAGAGTGGAT
1 GATTAGAGTGGAT
*
54418 -AGTAGAGTGGA
1 GATTAGAGTGGA
54429 CAATGTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.32, C:0.00, G:0.41, T:0.27
Consensus pattern (13 bp):
GATTAGAGTGGAT
Left flanking sequence: Indices 53892 -- 54391
GCCTGGCCAAGCAGCAGATGGCACTCCTGGTGCTCAAGGAGTACCTCCGGGTGCACGAGGCGGCC
GTGGTGGCCGAGATCGCCGAGCAGCCGCTCGCTGACACCACCGCCGCCACCGTGTTGGCCACCCT
CACCGACGTCATCGCGGTGGTGAAGCGCCAGCTGCCGTCCACCCTGGCCATCCCGCGCAAATACA
CCGCGGGACTGCCACTGAAGGTGCTGCTGCCCCAGAAGCTGCTCAACATGGCCGCGCAGAACCAG
TGGCTGCCCGTGGCCGCGCTGTTGGCCGAGCTCTACTTGCTGTTGCTGCGGATGCTCTTGAAGTC
CGACAAGGTCCCGGAAGAGAAGAAGGAGGAGTTGGTGCACGGGTGTCTCGGGTACTTGCACACCC
ACATGGTGACGCTCACCACGATCGACCCGGTGACGTTTTTGCCGCTGGCGGTGGACGACGACGTG
GAGTAGGGTGGAGACGAAGTAGAGGGGATTAGAGTGGATAGAGTG
Right flanking sequence: Indices 54429 -- 54928
CAATGTATTAATAGACGTTACGGTTAGTAAAGTGGACGTGACGGCTGGGGGGCCGCGAGCGGCGC
CCCCCAGACCCCCCAACGCCTTCTTGTGTGTTGGGTTGGGTGGTTTGGTGGTGCTCGTGTTCTTG
GTTTGTGGCTCTTTGCTCGGAGAGAATTGCGGTAGTTGAGTTTTCATTGAGACTCTAAAAGCATT
GATAAAGAAGAAACATATTGGTCGAGGTGCTATATAGGCTATTTTAACTAGGTTTGTGGCCCGCA
AACCCGGTCTTTCCGCGCTTTTGGGTGCTCTGCGGGTGGCTGCAAATTTGGTCAGAATTGCCTAT
TTGGGTCGACAAAGGCACCCGTAGTAAAACAAATCTGCCCGATTGAGAGCGCAATGGACCACCAC
AGCCACCGCGTAGTAAATCAAACCTACCCGATTGAGAACGCAATGGACCTCCACAGTCTCAAAAA
GTCCTCTTTGGGACTCCAATGGCCCCCCACACCCGAGCTATATAA
Found at i:54855 original size:54 final size:53
Alignment explanation
Indices: 54769--54874 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 53
54759 TCGACAAAGG
* * *
54769 CACCCGTAGTAAAACAAATCTGCCCGATTGAGAGCGCAATGGACCACCACAGC
1 CACCCGTAGTAAAACAAACCTACCCGATTGAGAACGCAATGGACCACCACAGC
* *
54822 CACCGCGTAGTAAATCAAACCTACCCGATTGAGAACGCAATGGACCTCCACAG
1 CACC-CGTAGTAAAACAAACCTACCCGATTGAGAACGCAATGGACCACCACAG
54875 TCTCAAAAAG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 4 0.09
54 43 0.91
ACGTcount: A:0.34, C:0.32, G:0.20, T:0.14
Consensus pattern (53 bp):
CACCCGTAGTAAAACAAACCTACCCGATTGAGAACGCAATGGACCACCACAGC
Left flanking sequence: Indices 54269 -- 54768
TACTTGCACACCCACATGGTGACGCTCACCACGATCGACCCGGTGACGTTTTTGCCGCTGGCGGT
GGACGACGACGTGGAGTAGGGTGGAGACGAAGTAGAGGGGATTAGAGTGGATAGAGTGGATTAGA
GTGGATGATTAGAGTGGATAGTAGAGTGGACAATGTATTAATAGACGTTACGGTTAGTAAAGTGG
ACGTGACGGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTTCTTGTGTGTTGGG
TTGGGTGGTTTGGTGGTGCTCGTGTTCTTGGTTTGTGGCTCTTTGCTCGGAGAGAATTGCGGTAG
TTGAGTTTTCATTGAGACTCTAAAAGCATTGATAAAGAAGAAACATATTGGTCGAGGTGCTATAT
AGGCTATTTTAACTAGGTTTGTGGCCCGCAAACCCGGTCTTTCCGCGCTTTTGGGTGCTCTGCGG
GTGGCTGCAAATTTGGTCAGAATTGCCTATTTGGGTCGACAAAGG
Right flanking sequence: Indices 54875 -- 55374
TCTCAAAAAGTCCTCTTTGGGACTCCAATGGCCCCCCACACCCGAGCTATATAAGCCCTACCCAT
CTCCATCATTTTCTCACCACCACCTATCGCCATCATGAAGTTCATTTCCATCATCGCTGCCTTGA
CTGCCTCTGTTGTTGCTGACAACATCGTCAACTCGTACGTGCTCCAGGAGGGCGAGGTGGCCTTC
AAGGCCCAGAACGACAAGGGCGAGACTGCCATCGTGATTGTTTCCGCTGCCGAGGCTGCCCAGGC
CGAGGGCGACAAGGCCAAGCGCTGGTCGTGGTTGGACTGGAGAATGTTTGAGCCCATTACTAAGT
AAGTAGAGGAATACTATAAACACTTTTAAGGGGTAGCTACCGTGGATGTAGATAGAGCTGGGAAG
AGAGAATAGGAACATATCTGAGCAAGACACCTGAGCAACCTGAGCAGACACCTGGGGTCAATTGC
GGATTTATAATACTCACAACCTCAGAAAGCAACAGAACGTGAGGA
Found at i:55546 original size:9 final size:9
Alignment explanation
Indices: 55522--55587 Score: 87
Period size: 9 Copynumber: 7.3 Consensus size: 9
55512 TAATTCTCCC
*
55522 ACCACCTTT
1 ACCACCTCT
*
55531 ACAACCTCT
1 ACCACCTCT
55540 ACCACCTCT
1 ACCACCTCT
*
55549 ACCACATCT
1 ACCACCTCT
*
55558 ACCACATCT
1 ACCACCTCT
55567 ACCACCTCT
1 ACCACCTCT
*
55576 ACCACTTCT
1 ACCACCTCT
55585 ACC
1 ACC
55588 TCTACCACTT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.27, C:0.48, G:0.00, T:0.24
Consensus pattern (9 bp):
ACCACCTCT
Left flanking sequence: Indices 55022 -- 55521
GACAACATCGTCAACTCGTACGTGCTCCAGGAGGGCGAGGTGGCCTTCAAGGCCCAGAACGACAA
GGGCGAGACTGCCATCGTGATTGTTTCCGCTGCCGAGGCTGCCCAGGCCGAGGGCGACAAGGCCA
AGCGCTGGTCGTGGTTGGACTGGAGAATGTTTGAGCCCATTACTAAGTAAGTAGAGGAATACTAT
AAACACTTTTAAGGGGTAGCTACCGTGGATGTAGATAGAGCTGGGAAGAGAGAATAGGAACATAT
CTGAGCAAGACACCTGAGCAACCTGAGCAGACACCTGGGGTCAATTGCGGATTTATAATACTCAC
AACCTCAGAAAGCAACAGAACGTGAGGATACCACCCCATTGAGCGGTGGTTGACCCTGGCTTCAC
ACCACCATCTGGTCCATGCTTAGTATGCACTCCAAACACATGGATCTGACTGGGAACATACCCCA
TTAACCCTTATAATATATCAACAACACCGGTTTTGTAATTCTCCC
Right flanking sequence: Indices 55588 -- 56087
TCTACCACTTCTGCCTCTACCACTTCTCCACCTCTGACTCGGGCCGCCACACGCGCCACACGCCA
CACCAGCTGATGTGCGCAACGGTGCATCGCCGTGCCCCATGGTGCACGCAGACTACAGTAACATC
GAAGCCTCGTCGAAGCCCGAGGCGCTCGAGCTGGTGGTGATGTCCTACCAGGCGCTTGCGGGGGA
CACCCGCTACTACGTGGCCAACCTCGCCAACGCCGCGCTGCTTGTGTGGCACGCCTACCACTCGC
TCGGGGTCGCGGTCAACTGGGCCGGGTTCTACGTCACCATAGACGACACCCTCCTTTTGGGCCCG
TTCCAGGGGAAGGTGGCGTGCCAGCAGATCGCGTTTGGCCAGGGGGTGTGTGGCACCGCTGCCGA
GAGCCAGCACACCCAGCTCGTGCGCGATGTGCACTCGTTCCCGGGGCACATCGCGTGCGACCTGG
AGACGAACTCGGAGATCGTGGTGCCCATCGTGGTGGAGGGCAAGA
Found at i:55590 original size:15 final size:15
Alignment explanation
Indices: 55570--55614 Score: 81
Period size: 15 Copynumber: 3.0 Consensus size: 15
55560 CACATCTACC
55570 ACCTCTACCACTTCT
1 ACCTCTACCACTTCT
55585 ACCTCTACCACTTCT
1 ACCTCTACCACTTCT
*
55600 GCCTCTACCACTTCT
1 ACCTCTACCACTTCT
55615 CCACCTCTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.18, C:0.47, G:0.02, T:0.33
Consensus pattern (15 bp):
ACCTCTACCACTTCT
Left flanking sequence: Indices 55070 -- 55569
AAGGCCCAGAACGACAAGGGCGAGACTGCCATCGTGATTGTTTCCGCTGCCGAGGCTGCCCAGGC
CGAGGGCGACAAGGCCAAGCGCTGGTCGTGGTTGGACTGGAGAATGTTTGAGCCCATTACTAAGT
AAGTAGAGGAATACTATAAACACTTTTAAGGGGTAGCTACCGTGGATGTAGATAGAGCTGGGAAG
AGAGAATAGGAACATATCTGAGCAAGACACCTGAGCAACCTGAGCAGACACCTGGGGTCAATTGC
GGATTTATAATACTCACAACCTCAGAAAGCAACAGAACGTGAGGATACCACCCCATTGAGCGGTG
GTTGACCCTGGCTTCACACCACCATCTGGTCCATGCTTAGTATGCACTCCAAACACATGGATCTG
ACTGGGAACATACCCCATTAACCCTTATAATATATCAACAACACCGGTTTTGTAATTCTCCCACC
ACCTTTACAACCTCTACCACCTCTACCACATCTACCACATCTACC
Right flanking sequence: Indices 55615 -- 56114
CCACCTCTGACTCGGGCCGCCACACGCGCCACACGCCACACCAGCTGATGTGCGCAACGGTGCAT
CGCCGTGCCCCATGGTGCACGCAGACTACAGTAACATCGAAGCCTCGTCGAAGCCCGAGGCGCTC
GAGCTGGTGGTGATGTCCTACCAGGCGCTTGCGGGGGACACCCGCTACTACGTGGCCAACCTCGC
CAACGCCGCGCTGCTTGTGTGGCACGCCTACCACTCGCTCGGGGTCGCGGTCAACTGGGCCGGGT
TCTACGTCACCATAGACGACACCCTCCTTTTGGGCCCGTTCCAGGGGAAGGTGGCGTGCCAGCAG
ATCGCGTTTGGCCAGGGGGTGTGTGGCACCGCTGCCGAGAGCCAGCACACCCAGCTCGTGCGCGA
TGTGCACTCGTTCCCGGGGCACATCGCGTGCGACCTGGAGACGAACTCGGAGATCGTGGTGCCCA
TCGTGGTGGAGGGCAAGACGGTGGCGGTGTTGGACATCGACTGCG
Found at i:56256 original size:12 final size:12
Alignment explanation
Indices: 56239--56267 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
56229 CATTAATGAT
56239 AGAGAATGAAGG
1 AGAGAATGAAGG
56251 AGAGAATGAAGG
1 AGAGAATGAAGG
56263 A-AGAA
1 AGAGAA
56268 GGGTAGAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.55, C:0.00, G:0.38, T:0.07
Consensus pattern (12 bp):
AGAGAATGAAGG
Left flanking sequence: Indices 55739 -- 56238
GCGCTCGAGCTGGTGGTGATGTCCTACCAGGCGCTTGCGGGGGACACCCGCTACTACGTGGCCAA
CCTCGCCAACGCCGCGCTGCTTGTGTGGCACGCCTACCACTCGCTCGGGGTCGCGGTCAACTGGG
CCGGGTTCTACGTCACCATAGACGACACCCTCCTTTTGGGCCCGTTCCAGGGGAAGGTGGCGTGC
CAGCAGATCGCGTTTGGCCAGGGGGTGTGTGGCACCGCTGCCGAGAGCCAGCACACCCAGCTCGT
GCGCGATGTGCACTCGTTCCCGGGGCACATCGCGTGCGACCTGGAGACGAACTCGGAGATCGTGG
TGCCCATCGTGGTGGAGGGCAAGACGGTGGCGGTGTTGGACATCGACTGCGAGACGAAGGCGGGG
TTTGATGAGGAAGACCAGCGGTGGTTGGAGCAGTTGGCCGCGGACATCGCGAAGACGTGTGCGTG
GCCGTAGGTGAAGAATGAAGGAAGAAGGTAGAATACATTAATGAT
Right flanking sequence: Indices 56268 -- 56767
GGGTAGAATACATTAGGGATAGAAGAATGGATGATAGAGAATGAAGGGTATAAGACATTAAGGAT
AGAAGAATGAAGGGTAGAGAATGAAGGAAGAAGGTTGAATACATTAATGATAGAAGAATTAAGGG
TAGAAGAGACTGAGGATAGAAGAATGAAGGATAGAAGAGAATTGAAGGATGGAAGAGAATTGAAG
AATAGAAAAAAATTGAAGGGTTGAAGGACTGAAGGATCGAAGAATGAAGAGTAGAGAATGAAGGG
TAGAAGAATGAAAGTCAGAAGAATGAAGGTCAGAAGACACTGAAGGATAGAAGAGAATTGAAAGA
ATGAAGGTTAGCAGAGAATTGAAGGATAAAAGAGAATTAGAGGAAAAAGTAGACACAGTTGGGAT
TGTTCCTGGAGAGATGGGAACAATTGGATGGAATAGAGCTGGAAACGGAGATGGAGATGGAAATG
TGGATCGAACGGTCGTACGGAATAATTGCGTCTGACGGTTTGATG
Found at i:56333 original size:45 final size:45
Alignment explanation
Indices: 56220--56581 Score: 144
Period size: 45 Copynumber: 7.6 Consensus size: 45
56210 GAAGGAAGAA
* * * *
56220 GGTAGAATACATTAATGATAG-AGAATGAAGGAGAGAATGAAGGAAGAAG
1 GGTAGAAGACATTAAGGATAGAAGAATGAAGGATAG-A-G-A--ATGAAG
* * * *
56269 GGTAGAATACATTAGGGATAGAAGAATGGATGATAGAGAATGAAG
1 GGTAGAAGACATTAAGGATAGAAGAATGAAGGATAGAGAATGAAG
* *
56314 GGTATAAGACATTAAGGATAGAAGAATGAAGGGTAGAGAATGAAGGAAG
1 GGTAGAAGACATTAAGGATAGAAGAATGAAGGATAGAGAAT----GAAG
* * * * *
56363 AAGGTTGAATACATTAATGATAGAAGAATTAAGGGTAGAAGAGACTG-AG
1 --GGTAGAAGACATTAAGGATAGAAGAATGAAGGATAG-AGA-A-TGAAG
* *
56412 GATAGAAGA-ATGAAGGATAGAAGAGAATTGAAGGATGGAAGAGAATTGAAG
1 GGTAGAAGACATTAAGGATAG-A-AGAA-TGAAGGAT---AGAGAA-TGAAG
** * * * * * *
56463 AATAGAAAAAAATTGAAGGGTTGAAGGACTGAAGGATCGAAGAATGAAG
1 GGTAG-AAGACATT-AAGGATAGAA-GAATGAAGGATAG-AGAATGAAG
* * * *
56512 AGTAG-AGA-ATGAAGGGTAGAAGAATGAAAG-TCAGAAGAATGAA-
1 GGTAGAAGACATTAAGGATAGAAGAATGAAGGAT-AG-AGAATGAAG
*
56555 GGTCAGAAGACACTGAAGGATAGAAGA
1 GGT-AGAAGACA-TTAAGGATAGAAGA
56582 GAATTGAAAG
Statistics
Matches: 245, Mismatches: 41, Indels: 56
0.72 0.12 0.16
Matches are distributed among these distances:
43 3 0.01
44 19 0.08
45 52 0.21
46 12 0.05
47 23 0.09
48 5 0.02
49 42 0.17
50 19 0.08
51 40 0.16
52 17 0.07
53 6 0.02
54 7 0.03
ACGTcount: A:0.48, C:0.03, G:0.33, T:0.17
Consensus pattern (45 bp):
GGTAGAAGACATTAAGGATAGAAGAATGAAGGATAGAGAATGAAG
Left flanking sequence: Indices 55720 -- 56219
AGCCTCGTCGAAGCCCGAGGCGCTCGAGCTGGTGGTGATGTCCTACCAGGCGCTTGCGGGGGACA
CCCGCTACTACGTGGCCAACCTCGCCAACGCCGCGCTGCTTGTGTGGCACGCCTACCACTCGCTC
GGGGTCGCGGTCAACTGGGCCGGGTTCTACGTCACCATAGACGACACCCTCCTTTTGGGCCCGTT
CCAGGGGAAGGTGGCGTGCCAGCAGATCGCGTTTGGCCAGGGGGTGTGTGGCACCGCTGCCGAGA
GCCAGCACACCCAGCTCGTGCGCGATGTGCACTCGTTCCCGGGGCACATCGCGTGCGACCTGGAG
ACGAACTCGGAGATCGTGGTGCCCATCGTGGTGGAGGGCAAGACGGTGGCGGTGTTGGACATCGA
CTGCGAGACGAAGGCGGGGTTTGATGAGGAAGACCAGCGGTGGTTGGAGCAGTTGGCCGCGGACA
TCGCGAAGACGTGTGCGTGGCCGTAGGTGAAGAATGAAGGAAGAA
Right flanking sequence: Indices 56582 -- 57081
GAATTGAAAGAATGAAGGTTAGCAGAGAATTGAAGGATAAAAGAGAATTAGAGGAAAAAGTAGAC
ACAGTTGGGATTGTTCCTGGAGAGATGGGAACAATTGGATGGAATAGAGCTGGAAACGGAGATGG
AGATGGAAATGTGGATCGAACGGTCGTACGGAATAATTGCGTCTGACGGTTTGATGGCACTGGTG
ACCAGTATGGCCGAATTTCACACCTCAAAGGCTTTCTAGGTGATAATACTGTTGCGATCCGACTT
CAGAAGCCAAGAGCTAAAGGCACCAGTCTCTTGTGTTCTTCGCCATGGTGGCTTTCTTACTCAGA
TCGAAGCTACGAAATACCGAAAGAATTACCATTAACGAATAAAAAAATCCCAATAGTCGGGGGCT
CTATTCTGTGACAACATCGAATGTAGGCTATGTAACCTATCATGGTTTACATCTCTGTAACTACC
TATTTCCTAAATATTCGAAGTTGTTTAGTAGATGGCTACATACCT
Found at i:56338 original size:16 final size:15
Alignment explanation
Indices: 56284--56581 Score: 135
Period size: 15 Copynumber: 18.7 Consensus size: 15
56274 AATACATTAG
*
56284 GGATAGAAGAATGGA
1 GGATAGAAGAATGAA
*
56299 TGATAG-AGAATGAA
1 GGATAGAAGAATGAA
* * *
56313 GGGTATAAGACATTAA
1 GGATAGAAGA-ATGAA
56329 GGATAGAAGAATGAA
1 GGATAGAAGAATGAA
*
56344 GGGTAG-AGAATGAA
1 GGATAGAAGAATGAA
*
56358 GGA-AGAAGGTTGAATACATTAA
1 GGATAGAA----G---A-ATGAA
* *
56380 TGATAGAAGAATTAA
1 GGATAGAAGAATGAA
*
56395 GGGTAGAAGAGACTG-A
1 GGATAGAAGA-A-TGAA
56411 GGATAGAAGAATGAA
1 GGATAGAAGAATGAA
56426 GGATAGAAGAGAATTGAA
1 GGATAG-A-AGAA-TGAA
*
56444 GGATGGAAGAGAATTGAA
1 GGATAG-A-AGAA-TGAA
* *
56462 GAATAGAAAAAAATTGAA
1 GGATAG--AAGAA-TGAA
* * *
56480 GGGTTGAAGGACTGAA
1 GGATAGAA-GAATGAA
*
56496 GGATCGAAGAATGAA
1 GGATAGAAGAATGAA
56511 -GAGTAG-AGAATGAA
1 GGA-TAGAAGAATGAA
*
56525 GGGTAGAAGAATGAA
1 GGATAGAAGAATGAA
*
56540 AG-TCAGAAGAATGAA
1 GGAT-AGAAGAATGAA
56555 GG-TCAGAAGACACTGAA
1 GGAT-AGAAGA-A-TGAA
56572 GGATAGAAGA
1 GGATAGAAGA
56582 GAATTGAAAG
Statistics
Matches: 223, Mismatches: 33, Indels: 52
0.72 0.11 0.17
Matches are distributed among these distances:
13 2 0.01
14 37 0.17
15 76 0.34
16 38 0.17
17 18 0.08
18 38 0.17
19 3 0.01
21 1 0.00
22 6 0.03
23 4 0.02
ACGTcount: A:0.48, C:0.03, G:0.33, T:0.16
Consensus pattern (15 bp):
GGATAGAAGAATGAA
Left flanking sequence: Indices 55784 -- 56283
ACCCGCTACTACGTGGCCAACCTCGCCAACGCCGCGCTGCTTGTGTGGCACGCCTACCACTCGCT
CGGGGTCGCGGTCAACTGGGCCGGGTTCTACGTCACCATAGACGACACCCTCCTTTTGGGCCCGT
TCCAGGGGAAGGTGGCGTGCCAGCAGATCGCGTTTGGCCAGGGGGTGTGTGGCACCGCTGCCGAG
AGCCAGCACACCCAGCTCGTGCGCGATGTGCACTCGTTCCCGGGGCACATCGCGTGCGACCTGGA
GACGAACTCGGAGATCGTGGTGCCCATCGTGGTGGAGGGCAAGACGGTGGCGGTGTTGGACATCG
ACTGCGAGACGAAGGCGGGGTTTGATGAGGAAGACCAGCGGTGGTTGGAGCAGTTGGCCGCGGAC
ATCGCGAAGACGTGTGCGTGGCCGTAGGTGAAGAATGAAGGAAGAAGGTAGAATACATTAATGAT
AGAGAATGAAGGAGAGAATGAAGGAAGAAGGGTAGAATACATTAG
Right flanking sequence: Indices 56582 -- 57081
GAATTGAAAGAATGAAGGTTAGCAGAGAATTGAAGGATAAAAGAGAATTAGAGGAAAAAGTAGAC
ACAGTTGGGATTGTTCCTGGAGAGATGGGAACAATTGGATGGAATAGAGCTGGAAACGGAGATGG
AGATGGAAATGTGGATCGAACGGTCGTACGGAATAATTGCGTCTGACGGTTTGATGGCACTGGTG
ACCAGTATGGCCGAATTTCACACCTCAAAGGCTTTCTAGGTGATAATACTGTTGCGATCCGACTT
CAGAAGCCAAGAGCTAAAGGCACCAGTCTCTTGTGTTCTTCGCCATGGTGGCTTTCTTACTCAGA
TCGAAGCTACGAAATACCGAAAGAATTACCATTAACGAATAAAAAAATCCCAATAGTCGGGGGCT
CTATTCTGTGACAACATCGAATGTAGGCTATGTAACCTATCATGGTTTACATCTCTGTAACTACC
TATTTCCTAAATATTCGAAGTTGTTTAGTAGATGGCTACATACCT
Found at i:56355 original size:14 final size:14
Alignment explanation
Indices: 56302--56359 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
56292 GAATGGATGA
56302 TAGAGAATGAAGGG
1 TAGAGAATGAAGGG
* * *
56316 TATAAGACATTAAGGA
1 TA-GAGA-ATGAAGGG
56332 TAGAAGAATGAAGGG
1 TAG-AGAATGAAGGG
56347 TAGAGAATGAAGG
1 TAGAGAATGAAGG
56360 AAGAAGGTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
14 12 0.34
15 12 0.34
16 11 0.31
ACGTcount: A:0.47, C:0.02, G:0.34, T:0.17
Consensus pattern (14 bp):
TAGAGAATGAAGGG
Left flanking sequence: Indices 55802 -- 56301
AACCTCGCCAACGCCGCGCTGCTTGTGTGGCACGCCTACCACTCGCTCGGGGTCGCGGTCAACTG
GGCCGGGTTCTACGTCACCATAGACGACACCCTCCTTTTGGGCCCGTTCCAGGGGAAGGTGGCGT
GCCAGCAGATCGCGTTTGGCCAGGGGGTGTGTGGCACCGCTGCCGAGAGCCAGCACACCCAGCTC
GTGCGCGATGTGCACTCGTTCCCGGGGCACATCGCGTGCGACCTGGAGACGAACTCGGAGATCGT
GGTGCCCATCGTGGTGGAGGGCAAGACGGTGGCGGTGTTGGACATCGACTGCGAGACGAAGGCGG
GGTTTGATGAGGAAGACCAGCGGTGGTTGGAGCAGTTGGCCGCGGACATCGCGAAGACGTGTGCG
TGGCCGTAGGTGAAGAATGAAGGAAGAAGGTAGAATACATTAATGATAGAGAATGAAGGAGAGAA
TGAAGGAAGAAGGGTAGAATACATTAGGGATAGAAGAATGGATGA
Right flanking sequence: Indices 56360 -- 56859
AAGAAGGTTGAATACATTAATGATAGAAGAATTAAGGGTAGAAGAGACTGAGGATAGAAGAATGA
AGGATAGAAGAGAATTGAAGGATGGAAGAGAATTGAAGAATAGAAAAAAATTGAAGGGTTGAAGG
ACTGAAGGATCGAAGAATGAAGAGTAGAGAATGAAGGGTAGAAGAATGAAAGTCAGAAGAATGAA
GGTCAGAAGACACTGAAGGATAGAAGAGAATTGAAAGAATGAAGGTTAGCAGAGAATTGAAGGAT
AAAAGAGAATTAGAGGAAAAAGTAGACACAGTTGGGATTGTTCCTGGAGAGATGGGAACAATTGG
ATGGAATAGAGCTGGAAACGGAGATGGAGATGGAAATGTGGATCGAACGGTCGTACGGAATAATT
GCGTCTGACGGTTTGATGGCACTGGTGACCAGTATGGCCGAATTTCACACCTCAAAGGCTTTCTA
GGTGATAATACTGTTGCGATCCGACTTCAGAAGCCAAGAGCTAAA
Found at i:56445 original size:18 final size:18
Alignment explanation
Indices: 56387--56481 Score: 94
Period size: 18 Copynumber: 5.6 Consensus size: 18
56377 TAATGATAGA
*
56387 AGAATT-AAGGGTAGAAG
1 AGAATTGAAGGATAGAAG
*
56404 AG-ACTG-AGGATAG-A-
1 AGAATTGAAGGATAGAAG
56418 AGAA-TGAAGGATAGAAG
1 AGAATTGAAGGATAGAAG
*
56435 AGAATTGAAGGATGGAAG
1 AGAATTGAAGGATAGAAG
* *
56453 AGAATTGAAGAATAGAAA
1 AGAATTGAAGGATAGAAG
*
56471 AAAATTGAAGG
1 AGAATTGAAGG
56482 GTTGAAGGAC
Statistics
Matches: 64, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
14 4 0.06
15 9 0.14
16 9 0.14
17 6 0.09
18 36 0.56
ACGTcount: A:0.51, C:0.01, G:0.33, T:0.16
Consensus pattern (18 bp):
AGAATTGAAGGATAGAAG
Left flanking sequence: Indices 55887 -- 56386
TAGACGACACCCTCCTTTTGGGCCCGTTCCAGGGGAAGGTGGCGTGCCAGCAGATCGCGTTTGGC
CAGGGGGTGTGTGGCACCGCTGCCGAGAGCCAGCACACCCAGCTCGTGCGCGATGTGCACTCGTT
CCCGGGGCACATCGCGTGCGACCTGGAGACGAACTCGGAGATCGTGGTGCCCATCGTGGTGGAGG
GCAAGACGGTGGCGGTGTTGGACATCGACTGCGAGACGAAGGCGGGGTTTGATGAGGAAGACCAG
CGGTGGTTGGAGCAGTTGGCCGCGGACATCGCGAAGACGTGTGCGTGGCCGTAGGTGAAGAATGA
AGGAAGAAGGTAGAATACATTAATGATAGAGAATGAAGGAGAGAATGAAGGAAGAAGGGTAGAAT
ACATTAGGGATAGAAGAATGGATGATAGAGAATGAAGGGTATAAGACATTAAGGATAGAAGAATG
AAGGGTAGAGAATGAAGGAAGAAGGTTGAATACATTAATGATAGA
Right flanking sequence: Indices 56482 -- 56981
GTTGAAGGACTGAAGGATCGAAGAATGAAGAGTAGAGAATGAAGGGTAGAAGAATGAAAGTCAGA
AGAATGAAGGTCAGAAGACACTGAAGGATAGAAGAGAATTGAAAGAATGAAGGTTAGCAGAGAAT
TGAAGGATAAAAGAGAATTAGAGGAAAAAGTAGACACAGTTGGGATTGTTCCTGGAGAGATGGGA
ACAATTGGATGGAATAGAGCTGGAAACGGAGATGGAGATGGAAATGTGGATCGAACGGTCGTACG
GAATAATTGCGTCTGACGGTTTGATGGCACTGGTGACCAGTATGGCCGAATTTCACACCTCAAAG
GCTTTCTAGGTGATAATACTGTTGCGATCCGACTTCAGAAGCCAAGAGCTAAAGGCACCAGTCTC
TTGTGTTCTTCGCCATGGTGGCTTTCTTACTCAGATCGAAGCTACGAAATACCGAAAGAATTACC
ATTAACGAATAAAAAAATCCCAATAGTCGGGGGCTCTATTCTGTG
Found at i:56553 original size:30 final size:29
Alignment explanation
Indices: 56492--56564 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
56482 GTTGAAGGAC
* *
56492 TGAAGGATCGAAGAATGAAGAGTAGAGAA
1 TGAAGGGTAGAAGAATGAAGAGTAGAGAA
56521 TGAAGGGTAGAAGAATGAA-AGTCAGAAGAA
1 TGAAGGGTAGAAGAATGAAGAGT-AG-AGAA
56551 TGAA-GGTCAGAAGA
1 TGAAGGGT-AGAAGA
56565 CACTGAAGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 3 0.08
29 22 0.56
30 14 0.36
ACGTcount: A:0.48, C:0.04, G:0.34, T:0.14
Consensus pattern (29 bp):
TGAAGGGTAGAAGAATGAAGAGTAGAGAA
Left flanking sequence: Indices 55992 -- 56491
AGCTCGTGCGCGATGTGCACTCGTTCCCGGGGCACATCGCGTGCGACCTGGAGACGAACTCGGAG
ATCGTGGTGCCCATCGTGGTGGAGGGCAAGACGGTGGCGGTGTTGGACATCGACTGCGAGACGAA
GGCGGGGTTTGATGAGGAAGACCAGCGGTGGTTGGAGCAGTTGGCCGCGGACATCGCGAAGACGT
GTGCGTGGCCGTAGGTGAAGAATGAAGGAAGAAGGTAGAATACATTAATGATAGAGAATGAAGGA
GAGAATGAAGGAAGAAGGGTAGAATACATTAGGGATAGAAGAATGGATGATAGAGAATGAAGGGT
ATAAGACATTAAGGATAGAAGAATGAAGGGTAGAGAATGAAGGAAGAAGGTTGAATACATTAATG
ATAGAAGAATTAAGGGTAGAAGAGACTGAGGATAGAAGAATGAAGGATAGAAGAGAATTGAAGGA
TGGAAGAGAATTGAAGAATAGAAAAAAATTGAAGGGTTGAAGGAC
Right flanking sequence: Indices 56565 -- 57064
CACTGAAGGATAGAAGAGAATTGAAAGAATGAAGGTTAGCAGAGAATTGAAGGATAAAAGAGAAT
TAGAGGAAAAAGTAGACACAGTTGGGATTGTTCCTGGAGAGATGGGAACAATTGGATGGAATAGA
GCTGGAAACGGAGATGGAGATGGAAATGTGGATCGAACGGTCGTACGGAATAATTGCGTCTGACG
GTTTGATGGCACTGGTGACCAGTATGGCCGAATTTCACACCTCAAAGGCTTTCTAGGTGATAATA
CTGTTGCGATCCGACTTCAGAAGCCAAGAGCTAAAGGCACCAGTCTCTTGTGTTCTTCGCCATGG
TGGCTTTCTTACTCAGATCGAAGCTACGAAATACCGAAAGAATTACCATTAACGAATAAAAAAAT
CCCAATAGTCGGGGGCTCTATTCTGTGACAACATCGAATGTAGGCTATGTAACCTATCATGGTTT
ACATCTCTGTAACTACCTATTTCCTAAATATTCGAAGTTGTTTAG
Found at i:56626 original size:44 final size:43
Alignment explanation
Indices: 56546--56630 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 43
56536 TGAAAGTCAG
*
56546 AAGAATGAAGGTCAGAAGACACTGAAGGATAGAAGAGAATTGA
1 AAGAATGAAGGTCAGAAGACACTGAAGGATAAAAGAGAATTGA
* *
56589 AAGAATGAAGGTTAGCAGAGA-ATTGAAGGATAAAAGAGAATT
1 AAGAATGAAGGTCAG-A-AGACACTGAAGGATAAAAGAGAATT
56631 AGAGGAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 14 0.38
44 20 0.54
45 3 0.08
ACGTcount: A:0.49, C:0.05, G:0.29, T:0.16
Consensus pattern (43 bp):
AAGAATGAAGGTCAGAAGACACTGAAGGATAAAAGAGAATTGA
Left flanking sequence: Indices 56046 -- 56545
CGAACTCGGAGATCGTGGTGCCCATCGTGGTGGAGGGCAAGACGGTGGCGGTGTTGGACATCGAC
TGCGAGACGAAGGCGGGGTTTGATGAGGAAGACCAGCGGTGGTTGGAGCAGTTGGCCGCGGACAT
CGCGAAGACGTGTGCGTGGCCGTAGGTGAAGAATGAAGGAAGAAGGTAGAATACATTAATGATAG
AGAATGAAGGAGAGAATGAAGGAAGAAGGGTAGAATACATTAGGGATAGAAGAATGGATGATAGA
GAATGAAGGGTATAAGACATTAAGGATAGAAGAATGAAGGGTAGAGAATGAAGGAAGAAGGTTGA
ATACATTAATGATAGAAGAATTAAGGGTAGAAGAGACTGAGGATAGAAGAATGAAGGATAGAAGA
GAATTGAAGGATGGAAGAGAATTGAAGAATAGAAAAAAATTGAAGGGTTGAAGGACTGAAGGATC
GAAGAATGAAGAGTAGAGAATGAAGGGTAGAAGAATGAAAGTCAG
Right flanking sequence: Indices 56631 -- 57130
AGAGGAAAAAGTAGACACAGTTGGGATTGTTCCTGGAGAGATGGGAACAATTGGATGGAATAGAG
CTGGAAACGGAGATGGAGATGGAAATGTGGATCGAACGGTCGTACGGAATAATTGCGTCTGACGG
TTTGATGGCACTGGTGACCAGTATGGCCGAATTTCACACCTCAAAGGCTTTCTAGGTGATAATAC
TGTTGCGATCCGACTTCAGAAGCCAAGAGCTAAAGGCACCAGTCTCTTGTGTTCTTCGCCATGGT
GGCTTTCTTACTCAGATCGAAGCTACGAAATACCGAAAGAATTACCATTAACGAATAAAAAAATC
CCAATAGTCGGGGGCTCTATTCTGTGACAACATCGAATGTAGGCTATGTAACCTATCATGGTTTA
CATCTCTGTAACTACCTATTTCCTAAATATTCGAAGTTGTTTAGTAGATGGCTACATACCTGGTT
AGGTACATAGAGCCAACTCCGTAGCTATAAAGGTGGAGTTCGAAG
Found at i:57596 original size:10 final size:10
Alignment explanation
Indices: 57578--57619 Score: 75
Period size: 10 Copynumber: 4.2 Consensus size: 10
57568 CTAGACTCAA
*
57578 AACCGGACTC
1 AACCAGACTC
57588 AACCAGACTC
1 AACCAGACTC
57598 AACCAGACTC
1 AACCAGACTC
57608 AACCAGACTC
1 AACCAGACTC
57618 AA
1 AA
57620 AACCATAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.40, C:0.38, G:0.12, T:0.10
Consensus pattern (10 bp):
AACCAGACTC
Left flanking sequence: Indices 57078 -- 57577
ACCTGGTTAGGTACATAGAGCCAACTCCGTAGCTATAAAGGTGGAGTTCGAAGCCCAGCGGCTTT
ACATGACAGAGTTGGGCCTATTTATACCTGAAATGGAGTCTCCCTGTCCCACTGTCGTCTAACCC
GCGCTTGGCATAAACTCCCAATTGGTCGCTGACAATGGCCCGAACAATTTAGTCGTTTTGAGAAT
TCCCCTTATTTTTAGAATTAACCGGTGACCCGGGTATGCTAACTAGAGATACAGGTGTGGTGGCA
TTATATAGCTGTCTTTTCCAGCATTTTGCTCGGCTTCATCCAAGTGGACCTGGTTGGATCTCTTA
GAATTAAAGCAACGAAACTGGGTTGAATAGAAAATAATTGTAAACCGTTTTCTGGGTACTGTCTA
GCTCACCTGGTAATGGATGCTTAAATGCGTTATTCACGTCTTCTGAGTCCTGACTACCTGAAGCA
GAACCATAGACTCACGGAGTTTTAGACCACAGAAACTAGACTCAA
Right flanking sequence: Indices 57620 -- 58119
AACCATAAACTCAAACCATAAACTCAAAACCATGAACTTAAAATCATCCACTTCGAAACATTGAT
TCAGACCACTCAGAACCATCGACTCACCATCGAATCAGACCAGACTCACCATTGACCCACTACTC
ATACCACTCTTCACATTACATCCAAACAAACCTCCGTCCAACACCCACCACCACTTCTACTATTT
GTATTCATTTACAGACGGGCCTGGGCCCCTAGTGTCTACCAACGGCTGTCATTCCCAAAGCGGTA
ATTTGCAACCGCACAGCAAACCGCGCTAGGCCATCGCCCGGCGCTGCTCCTCGCGGTGCAAGTTG
TGGTACAACATCTCCTTGGCCTTGACCACCGCCTGGTGCGAGCCCGTGATGATGAACTCGCGCTC
GTCCTTGCCCTCTTCCTCGTCGGAAATGCCAATGTACGCCCCCAGCACCTTGCGGACCCCCTGGA
TCCGCAGCCCGTTCTTGCCAATGAGCGCACCGACAATGTCGTTGG
Found at i:57637 original size:13 final size:14
Alignment explanation
Indices: 57614--57662 Score: 73
Period size: 14 Copynumber: 3.6 Consensus size: 14
57604 ACTCAACCAG
57614 ACTCAAAACCATAA
1 ACTCAAAACCATAA
57628 ACTC-AAACCATAA
1 ACTCAAAACCATAA
*
57641 ACTCAAAACCATGA
1 ACTCAAAACCATAA
*
57655 ACTTAAAA
1 ACTCAAAA
57663 TCATCCACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
13 13 0.41
14 19 0.59
ACGTcount: A:0.55, C:0.27, G:0.02, T:0.16
Consensus pattern (14 bp):
ACTCAAAACCATAA
Left flanking sequence: Indices 57114 -- 57613
AAAGGTGGAGTTCGAAGCCCAGCGGCTTTACATGACAGAGTTGGGCCTATTTATACCTGAAATGG
AGTCTCCCTGTCCCACTGTCGTCTAACCCGCGCTTGGCATAAACTCCCAATTGGTCGCTGACAAT
GGCCCGAACAATTTAGTCGTTTTGAGAATTCCCCTTATTTTTAGAATTAACCGGTGACCCGGGTA
TGCTAACTAGAGATACAGGTGTGGTGGCATTATATAGCTGTCTTTTCCAGCATTTTGCTCGGCTT
CATCCAAGTGGACCTGGTTGGATCTCTTAGAATTAAAGCAACGAAACTGGGTTGAATAGAAAATA
ATTGTAAACCGTTTTCTGGGTACTGTCTAGCTCACCTGGTAATGGATGCTTAAATGCGTTATTCA
CGTCTTCTGAGTCCTGACTACCTGAAGCAGAACCATAGACTCACGGAGTTTTAGACCACAGAAAC
TAGACTCAAAACCGGACTCAACCAGACTCAACCAGACTCAACCAG
Right flanking sequence: Indices 57663 -- 58162
TCATCCACTTCGAAACATTGATTCAGACCACTCAGAACCATCGACTCACCATCGAATCAGACCAG
ACTCACCATTGACCCACTACTCATACCACTCTTCACATTACATCCAAACAAACCTCCGTCCAACA
CCCACCACCACTTCTACTATTTGTATTCATTTACAGACGGGCCTGGGCCCCTAGTGTCTACCAAC
GGCTGTCATTCCCAAAGCGGTAATTTGCAACCGCACAGCAAACCGCGCTAGGCCATCGCCCGGCG
CTGCTCCTCGCGGTGCAAGTTGTGGTACAACATCTCCTTGGCCTTGACCACCGCCTGGTGCGAGC
CCGTGATGATGAACTCGCGCTCGTCCTTGCCCTCTTCCTCGTCGGAAATGCCAATGTACGCCCCC
AGCACCTTGCGGACCCCCTGGATCCGCAGCCCGTTCTTGCCAATGAGCGCACCGACAATGTCGTT
GGGGAAGCTCAACGTGATCTTGGCCGCCAGCTGCTGGGGCTCGGC
Found at i:58887 original size:18 final size:18
Alignment explanation
Indices: 58866--58903 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
58856 GGGGAGAGGG
58866 GAGGCGCCCGGTAACGGC
1 GAGGCGCCCGGTAACGGC
*
58884 GAGGTGCCCGGTAACGGC
1 GAGGCGCCCGGTAACGGC
58902 GA
1 GA
58904 CGCGAGCGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.29, G:0.45, T:0.08
Consensus pattern (18 bp):
GAGGCGCCCGGTAACGGC
Left flanking sequence: Indices 58366 -- 58865
GGTACCGGTGCTGGATCTGCTGGATCCGGGCGCCCTTGGCGCCAATCAACGTGCCCATCTGCTTG
TTGGGCACGAGAAGCCGGAGCACGGTGGTCTCGCCGTCGACACACGGCGTCAACAGGAGCTGTTT
CAACGGGAAGTACGAGTACTCGGCGGGGGCAGGCCCCAAGTTGACCAACGCCTGGGCAAAGAAGC
TGAGGGCCTTGGCGGCAGCGTCAAGCGTGCCCAGCACCGTGAGGATCCGCTCGTGCGACCCGGGC
TGGAGCCGCGAGATCCCGGCCCGGGTCTTGGTCTGGGTGCGAATGGAGTCGATCACCTGCCCGTT
CTGGCCAATGAGACACCCGGCCTCTTTCGCCAGCACAAGCACCCGGAAAACGATCAACGCCGCCG
CGTGGGTGGGGTCGGCGACGTCGGGAAGCTGTGCCAGCAGCGGCTGGGGCGAGTTGTCGGTGGAA
AGCTCGGGAAGCGGGCTGGGAGGGAGCGAGGAGGAGGGGAGAGGG
Right flanking sequence: Indices 58904 -- 59403
CGCGAGCGCAGCGCCACCGAGCGCGTCCACGGGCGCAAGCGGCAGGTGGGACGACAGCGGCGGTA
GCGGCGACACCGGCAGCACCAGCAGCTGGCTCGCAAGCGGCAGCGCCATCGCAAACGCCAGCGCG
TTGGGGGGCACCAGTTGCGAGCCCTGGAGGTGGGTGGGAAGGGTGCGGGCTCCCAACTGGGAGGA
CCCGAGCCCGAGGGGGGCGATGCCCGGAGGCGCCGACTGGCTGGCCAGCATCGACGCCGAGCCCG
AGGTCGCGTAGTAGCCCGACGCAGCCGAGCCGTGGCTCGACCCGTGCGACCCGTGCGACCCGTGG
GGGCTGTCGTCGTACGGCGGGTGGGCGCCCGGAGGATGGGAGGACTGGTGGGGGGCACCCGCGAG
CGAGGAGGCCGGCGCGGGCTGGGAGGAGGACGGAGGAGGCCCGGCAGAGCCCGGAGCGGGCTGGG
AGGACGCCTGCGCCGGAGCCTGCTCGGTGAAGTTGGTGTCGAACA
Found at i:59215 original size:9 final size:9
Alignment explanation
Indices: 59201--59227 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
59191 AGCCGTGGCT
59201 CGACCCGTG
1 CGACCCGTG
59210 CGACCCGTG
1 CGACCCGTG
59219 CGACCCGTG
1 CGACCCGTG
59228 GGGGCTGTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.44, G:0.33, T:0.11
Consensus pattern (9 bp):
CGACCCGTG
Left flanking sequence: Indices 58701 -- 59200
AGACACCCGGCCTCTTTCGCCAGCACAAGCACCCGGAAAACGATCAACGCCGCCGCGTGGGTGGG
GTCGGCGACGTCGGGAAGCTGTGCCAGCAGCGGCTGGGGCGAGTTGTCGGTGGAAAGCTCGGGAA
GCGGGCTGGGAGGGAGCGAGGAGGAGGGGAGAGGGGAGGCGCCCGGTAACGGCGAGGTGCCCGGT
AACGGCGACGCGAGCGCAGCGCCACCGAGCGCGTCCACGGGCGCAAGCGGCAGGTGGGACGACAG
CGGCGGTAGCGGCGACACCGGCAGCACCAGCAGCTGGCTCGCAAGCGGCAGCGCCATCGCAAACG
CCAGCGCGTTGGGGGGCACCAGTTGCGAGCCCTGGAGGTGGGTGGGAAGGGTGCGGGCTCCCAAC
TGGGAGGACCCGAGCCCGAGGGGGGCGATGCCCGGAGGCGCCGACTGGCTGGCCAGCATCGACGC
CGAGCCCGAGGTCGCGTAGTAGCCCGACGCAGCCGAGCCGTGGCT
Right flanking sequence: Indices 59228 -- 59727
GGGGCTGTCGTCGTACGGCGGGTGGGCGCCCGGAGGATGGGAGGACTGGTGGGGGGCACCCGCGA
GCGAGGAGGCCGGCGCGGGCTGGGAGGAGGACGGAGGAGGCCCGGCAGAGCCCGGAGCGGGCTGG
GAGGACGCCTGCGCCGGAGCCTGCTCGGTGAAGTTGGTGTCGAACAAGGACTCGGTCATGGTGGC
ACGCGGGTGGAGAGGGAGGGTTTGGGTCGGGGGGGAAGCTGGGAGGGTGGGTTGTGGTTGGAGGC
GGCTGAGAGCGGCTAGCGGAGGCACGGGTGGGGGTGTAGAGTTGCTTGTTGACCGACGGGCTTGG
TTGCGGAGGAAAAAAGATCCGGGGCGAGGGGCGGGCGAAGTGAGGAAAAAGCGGTGTGCGGTGGG
GCGGGTTTTTCGAGGTGGTGGGCGGTGGCTGGGGGTCTACGGGGACGGTGGAGGGCGGTGGTGGG
TGTGTGGTGGGTGTGTGGTGGGTGTGGGTGGGTGTGGGTGGGTGT
Found at i:59691 original size:11 final size:11
Alignment explanation
Indices: 59675--59736 Score: 103
Period size: 10 Copynumber: 5.9 Consensus size: 11
59665 GTGGAGGGCG
59675 GTGGTGGGTGT
1 GTGGTGGGTGT
59686 GTGGTGGGTGT
1 GTGGTGGGTGT
59697 GTGGTGGGTGT
1 GTGGTGGGTGT
59708 G-GGTGGGTGT
1 GTGGTGGGTGT
59718 G-GGTGGGTGT
1 GTGGTGGGTGT
59728 -TGGTGGGTG
1 GTGGTGGGTG
59737 GTTTACTGGC
Statistics
Matches: 50, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
10 27 0.54
11 23 0.46
ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34
Consensus pattern (11 bp):
GTGGTGGGTGT
Left flanking sequence: Indices 59175 -- 59674
TAGCCCGACGCAGCCGAGCCGTGGCTCGACCCGTGCGACCCGTGCGACCCGTGGGGGCTGTCGTC
GTACGGCGGGTGGGCGCCCGGAGGATGGGAGGACTGGTGGGGGGCACCCGCGAGCGAGGAGGCCG
GCGCGGGCTGGGAGGAGGACGGAGGAGGCCCGGCAGAGCCCGGAGCGGGCTGGGAGGACGCCTGC
GCCGGAGCCTGCTCGGTGAAGTTGGTGTCGAACAAGGACTCGGTCATGGTGGCACGCGGGTGGAG
AGGGAGGGTTTGGGTCGGGGGGGAAGCTGGGAGGGTGGGTTGTGGTTGGAGGCGGCTGAGAGCGG
CTAGCGGAGGCACGGGTGGGGGTGTAGAGTTGCTTGTTGACCGACGGGCTTGGTTGCGGAGGAAA
AAAGATCCGGGGCGAGGGGCGGGCGAAGTGAGGAAAAAGCGGTGTGCGGTGGGGCGGGTTTTTCG
AGGTGGTGGGCGGTGGCTGGGGGTCTACGGGGACGGTGGAGGGCG
Right flanking sequence: Indices 59737 -- 60236
GTTTACTGGCGGGTAGTTGTGTAGGCGTAGGCTGTGGTGGTGTGGTGGGGGTCCGGTGGGGGGTC
CGGTGGTGGTCGGAATAAGGTTTGCGGAAGCCTCGTAAGTGGGTTTGTGGAAGAAGGGAGGTCAC
GGGGCTGGTATGTGAGGGGTGTGGTAGGGAGTCTGTGGTGTTTCTGGGTGTTTTTAGGGTGTTTC
TACGGTGTTTCTGGGTGTCTACGGGGTGCAGTGCGTGGAGGTGGTGGAAGCACCGGGTACTTCCG
GATGGCGAAAGGAGTGGGGCGGCGGGCTGGTGTGCCACGTAGCCTTTGGGACGGTGGGAGGTGTC
GGCACATGGTGGCGCCTCACTCTGGCTATTCCTGCCGGGTGGTAGAAAGGGAAGAAAAGTGGGTA
AAAGAAAAGTGGGTAGAGAGGTGGGTAAAGAAAAGTGGGTGGTGGTGGTGGTGAATAGGTAGTGA
AGTGCTTAGAAGTGGAGGAAGAAGTGGAAGTTTTAGAAGCGAGGT
Found at i:59800 original size:12 final size:12
Alignment explanation
Indices: 59783--59807 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59773 GTGGTGTGGT
59783 GGGGGTCCGGTG
1 GGGGGTCCGGTG
59795 GGGGGTCCGGTG
1 GGGGGTCCGGTG
59807 G
1 G
59808 TGGTCGGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.68, T:0.16
Consensus pattern (12 bp):
GGGGGTCCGGTG
Left flanking sequence: Indices 59283 -- 59782
GCACCCGCGAGCGAGGAGGCCGGCGCGGGCTGGGAGGAGGACGGAGGAGGCCCGGCAGAGCCCGG
AGCGGGCTGGGAGGACGCCTGCGCCGGAGCCTGCTCGGTGAAGTTGGTGTCGAACAAGGACTCGG
TCATGGTGGCACGCGGGTGGAGAGGGAGGGTTTGGGTCGGGGGGGAAGCTGGGAGGGTGGGTTGT
GGTTGGAGGCGGCTGAGAGCGGCTAGCGGAGGCACGGGTGGGGGTGTAGAGTTGCTTGTTGACCG
ACGGGCTTGGTTGCGGAGGAAAAAAGATCCGGGGCGAGGGGCGGGCGAAGTGAGGAAAAAGCGGT
GTGCGGTGGGGCGGGTTTTTCGAGGTGGTGGGCGGTGGCTGGGGGTCTACGGGGACGGTGGAGGG
CGGTGGTGGGTGTGTGGTGGGTGTGTGGTGGGTGTGGGTGGGTGTGGGTGGGTGTTGGTGGGTGG
TTTACTGGCGGGTAGTTGTGTAGGCGTAGGCTGTGGTGGTGTGGT
Right flanking sequence: Indices 59808 -- 60307
TGGTCGGAATAAGGTTTGCGGAAGCCTCGTAAGTGGGTTTGTGGAAGAAGGGAGGTCACGGGGCT
GGTATGTGAGGGGTGTGGTAGGGAGTCTGTGGTGTTTCTGGGTGTTTTTAGGGTGTTTCTACGGT
GTTTCTGGGTGTCTACGGGGTGCAGTGCGTGGAGGTGGTGGAAGCACCGGGTACTTCCGGATGGC
GAAAGGAGTGGGGCGGCGGGCTGGTGTGCCACGTAGCCTTTGGGACGGTGGGAGGTGTCGGCACA
TGGTGGCGCCTCACTCTGGCTATTCCTGCCGGGTGGTAGAAAGGGAAGAAAAGTGGGTAAAAGAA
AAGTGGGTAGAGAGGTGGGTAAAGAAAAGTGGGTGGTGGTGGTGGTGAATAGGTAGTGAAGTGCT
TAGAAGTGGAGGAAGAAGTGGAAGTTTTAGAAGCGAGGTATAGATGTGGTGGTTTCAGAAGCAGT
GGAGAGTTTGGAGTGGTCGTAATTGGCCAGGGTTGGTCCCAGGAG
Found at i:59912 original size:11 final size:10
Alignment explanation
Indices: 59898--59949 Score: 59
Period size: 11 Copynumber: 4.9 Consensus size: 10
59888 TGGTAGGGAG
59898 TCTGTGGTGTT
1 TCTG-GGTGTT
59909 TCTGGGTGTT
1 TCTGGGTGTT
*
59919 TTTAGGGTGTT
1 TCT-GGGTGTT
*
59930 TCTACGGTGTT
1 TCT-GGGTGTT
59941 TCTGGGTGT
1 TCTGGGTGT
59950 CTACGGGGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
10 13 0.36
11 23 0.64
ACGTcount: A:0.04, C:0.10, G:0.37, T:0.50
Consensus pattern (10 bp):
TCTGGGTGTT
Left flanking sequence: Indices 59398 -- 59897
CGAACAAGGACTCGGTCATGGTGGCACGCGGGTGGAGAGGGAGGGTTTGGGTCGGGGGGGAAGCT
GGGAGGGTGGGTTGTGGTTGGAGGCGGCTGAGAGCGGCTAGCGGAGGCACGGGTGGGGGTGTAGA
GTTGCTTGTTGACCGACGGGCTTGGTTGCGGAGGAAAAAAGATCCGGGGCGAGGGGCGGGCGAAG
TGAGGAAAAAGCGGTGTGCGGTGGGGCGGGTTTTTCGAGGTGGTGGGCGGTGGCTGGGGGTCTAC
GGGGACGGTGGAGGGCGGTGGTGGGTGTGTGGTGGGTGTGTGGTGGGTGTGGGTGGGTGTGGGTG
GGTGTTGGTGGGTGGTTTACTGGCGGGTAGTTGTGTAGGCGTAGGCTGTGGTGGTGTGGTGGGGG
TCCGGTGGGGGGTCCGGTGGTGGTCGGAATAAGGTTTGCGGAAGCCTCGTAAGTGGGTTTGTGGA
AGAAGGGAGGTCACGGGGCTGGTATGTGAGGGGTGTGGTAGGGAG
Right flanking sequence: Indices 59950 -- 60449
CTACGGGGTGCAGTGCGTGGAGGTGGTGGAAGCACCGGGTACTTCCGGATGGCGAAAGGAGTGGG
GCGGCGGGCTGGTGTGCCACGTAGCCTTTGGGACGGTGGGAGGTGTCGGCACATGGTGGCGCCTC
ACTCTGGCTATTCCTGCCGGGTGGTAGAAAGGGAAGAAAAGTGGGTAAAAGAAAAGTGGGTAGAG
AGGTGGGTAAAGAAAAGTGGGTGGTGGTGGTGGTGAATAGGTAGTGAAGTGCTTAGAAGTGGAGG
AAGAAGTGGAAGTTTTAGAAGCGAGGTATAGATGTGGTGGTTTCAGAAGCAGTGGAGAGTTTGGA
GTGGTCGTAATTGGCCAGGGTTGGTCCCAGGAGTGGTGGTTAGAGTATTGGTGGGAAGTGGAAGG
GGTGTCTAGGGGTCTGGCTAAGAAAAGAAAGTTGTGTGTAGTGGTGTGTGTCAGTGTGCGTCAGA
GTGAGCTATCAGTGGCTGTCAGTGAACTACAACCACCCTGTGCCC
Found at i:59929 original size:21 final size:21
Alignment explanation
Indices: 59898--59949 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
59888 TGGTAGGGAG
*
59898 TCTGTGGTGTTTCT-GGGTGTT
1 TCTG-GGTGTTTCTACGGTGTT
*
59919 TTTAGGGTGTTTCTACGGTGTT
1 TCT-GGGTGTTTCTACGGTGTT
59941 TCTGGGTGT
1 TCTGGGTGT
59950 CTACGGGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.04, C:0.10, G:0.37, T:0.50
Consensus pattern (21 bp):
TCTGGGTGTTTCTACGGTGTT
Left flanking sequence: Indices 59398 -- 59897
CGAACAAGGACTCGGTCATGGTGGCACGCGGGTGGAGAGGGAGGGTTTGGGTCGGGGGGGAAGCT
GGGAGGGTGGGTTGTGGTTGGAGGCGGCTGAGAGCGGCTAGCGGAGGCACGGGTGGGGGTGTAGA
GTTGCTTGTTGACCGACGGGCTTGGTTGCGGAGGAAAAAAGATCCGGGGCGAGGGGCGGGCGAAG
TGAGGAAAAAGCGGTGTGCGGTGGGGCGGGTTTTTCGAGGTGGTGGGCGGTGGCTGGGGGTCTAC
GGGGACGGTGGAGGGCGGTGGTGGGTGTGTGGTGGGTGTGTGGTGGGTGTGGGTGGGTGTGGGTG
GGTGTTGGTGGGTGGTTTACTGGCGGGTAGTTGTGTAGGCGTAGGCTGTGGTGGTGTGGTGGGGG
TCCGGTGGGGGGTCCGGTGGTGGTCGGAATAAGGTTTGCGGAAGCCTCGTAAGTGGGTTTGTGGA
AGAAGGGAGGTCACGGGGCTGGTATGTGAGGGGTGTGGTAGGGAG
Right flanking sequence: Indices 59950 -- 60449
CTACGGGGTGCAGTGCGTGGAGGTGGTGGAAGCACCGGGTACTTCCGGATGGCGAAAGGAGTGGG
GCGGCGGGCTGGTGTGCCACGTAGCCTTTGGGACGGTGGGAGGTGTCGGCACATGGTGGCGCCTC
ACTCTGGCTATTCCTGCCGGGTGGTAGAAAGGGAAGAAAAGTGGGTAAAAGAAAAGTGGGTAGAG
AGGTGGGTAAAGAAAAGTGGGTGGTGGTGGTGGTGAATAGGTAGTGAAGTGCTTAGAAGTGGAGG
AAGAAGTGGAAGTTTTAGAAGCGAGGTATAGATGTGGTGGTTTCAGAAGCAGTGGAGAGTTTGGA
GTGGTCGTAATTGGCCAGGGTTGGTCCCAGGAGTGGTGGTTAGAGTATTGGTGGGAAGTGGAAGG
GGTGTCTAGGGGTCTGGCTAAGAAAAGAAAGTTGTGTGTAGTGGTGTGTGTCAGTGTGCGTCAGA
GTGAGCTATCAGTGGCTGTCAGTGAACTACAACCACCCTGTGCCC
Found at i:60133 original size:15 final size:14
Alignment explanation
Indices: 60113--60166 Score: 67
Period size: 15 Copynumber: 3.9 Consensus size: 14
60103 GTAGAAAGGG
60113 AAGAAAAGTGGGTAA
1 AAGAAAAGTGGGT-A
60128 AAGAAAAGTGGGT-
1 AAGAAAAGTGGGTA
* *
60141 -AGAGAGGTGGGTA
1 AAGAAAAGTGGGTA
60154 AAGAAAAGTGGGT
1 AAGAAAAGTGGGT
60167 GGTGGTGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
12 10 0.30
14 10 0.30
15 13 0.39
ACGTcount: A:0.44, C:0.00, G:0.41, T:0.15
Consensus pattern (14 bp):
AAGAAAAGTGGGTA
Left flanking sequence: Indices 59613 -- 60112
GTGGGGCGGGTTTTTCGAGGTGGTGGGCGGTGGCTGGGGGTCTACGGGGACGGTGGAGGGCGGTG
GTGGGTGTGTGGTGGGTGTGTGGTGGGTGTGGGTGGGTGTGGGTGGGTGTTGGTGGGTGGTTTAC
TGGCGGGTAGTTGTGTAGGCGTAGGCTGTGGTGGTGTGGTGGGGGTCCGGTGGGGGGTCCGGTGG
TGGTCGGAATAAGGTTTGCGGAAGCCTCGTAAGTGGGTTTGTGGAAGAAGGGAGGTCACGGGGCT
GGTATGTGAGGGGTGTGGTAGGGAGTCTGTGGTGTTTCTGGGTGTTTTTAGGGTGTTTCTACGGT
GTTTCTGGGTGTCTACGGGGTGCAGTGCGTGGAGGTGGTGGAAGCACCGGGTACTTCCGGATGGC
GAAAGGAGTGGGGCGGCGGGCTGGTGTGCCACGTAGCCTTTGGGACGGTGGGAGGTGTCGGCACA
TGGTGGCGCCTCACTCTGGCTATTCCTGCCGGGTGGTAGAAAGGG
Right flanking sequence: Indices 60167 -- 60666
GGTGGTGGTGGTGAATAGGTAGTGAAGTGCTTAGAAGTGGAGGAAGAAGTGGAAGTTTTAGAAGC
GAGGTATAGATGTGGTGGTTTCAGAAGCAGTGGAGAGTTTGGAGTGGTCGTAATTGGCCAGGGTT
GGTCCCAGGAGTGGTGGTTAGAGTATTGGTGGGAAGTGGAAGGGGTGTCTAGGGGTCTGGCTAAG
AAAAGAAAGTTGTGTGTAGTGGTGTGTGTCAGTGTGCGTCAGAGTGAGCTATCAGTGGCTGTCAG
TGAACTACAACCACCCTGTGCCCGCTGATTGTAATCACCATTGTTGGTAACCGAGGTAACCGGCA
TTGTTTCCGTGGCTCAGCGTGCCAGGGACGCCCGTAGTGTTACATTGACTCTTGAACAGTGCGTT
GTTTGCCCGAGATGAAAATAGTGACATCGTCGAGTTTAAGGCAGTCGACCCGATGGCCAGACTGA
AAAGCCTGGCTTGTAAAAAGCCTAGGTTGTAAGGTTTTATTGGCT
Found at i:60642 original size:16 final size:16
Alignment explanation
Indices: 60621--60653 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60611 GGCCAGACTG
60621 AAAAGCCT-GGCTTGTA
1 AAAAGCCTAGG-TTGTA
60637 AAAAGCCTAGGTTGTA
1 AAAAGCCTAGGTTGTA
60653 A
1 A
60654 GGTTTTATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.24
Consensus pattern (16 bp):
AAAAGCCTAGGTTGTA
Left flanking sequence: Indices 60121 -- 60620
TGGGTAAAAGAAAAGTGGGTAGAGAGGTGGGTAAAGAAAAGTGGGTGGTGGTGGTGGTGAATAGG
TAGTGAAGTGCTTAGAAGTGGAGGAAGAAGTGGAAGTTTTAGAAGCGAGGTATAGATGTGGTGGT
TTCAGAAGCAGTGGAGAGTTTGGAGTGGTCGTAATTGGCCAGGGTTGGTCCCAGGAGTGGTGGTT
AGAGTATTGGTGGGAAGTGGAAGGGGTGTCTAGGGGTCTGGCTAAGAAAAGAAAGTTGTGTGTAG
TGGTGTGTGTCAGTGTGCGTCAGAGTGAGCTATCAGTGGCTGTCAGTGAACTACAACCACCCTGT
GCCCGCTGATTGTAATCACCATTGTTGGTAACCGAGGTAACCGGCATTGTTTCCGTGGCTCAGCG
TGCCAGGGACGCCCGTAGTGTTACATTGACTCTTGAACAGTGCGTTGTTTGCCCGAGATGAAAAT
AGTGACATCGTCGAGTTTAAGGCAGTCGACCCGATGGCCAGACTG
Right flanking sequence: Indices 60654 -- 61153
GGTTTTATTGGCTCTGTACACTGGCTGAACCAGTTGTCCGAGTCTTCCTTGCTTAACTAGGTATA
TAGTCAACACTCAACTCTGGACCCATTTAATTTCACATTAAGCCATCCCATCACTTCTTCAGTGG
CTGTGCCCGTTAGCGATTCAGAAGTGAGCCTGACTGGTCGCTGCTGGAACATCTTCTCTGGGTTG
GAGGCGATTAGTTCTAAGCGACCTATGGATTGGTTCTACTCATTAATGAATATAACTCACTGATA
AATATAACTCGTTGATAAATACAACTCACTGATAATACTCTTAGCTCTACTGGCATTGGATTTGG
AGAACTCACACACAAACCCATCTCAGTCTGATCTCAGCAATCAAATACATGGCTTCGTTAATCAT
CTCAATCACAGCCCAATGCAAAAGTTTTTGATCTCATCGTATCAGTCCTATTCAAGCGATCTTCA
TGAGGTCTTCGCTCTCCATCCTTTCAGCAGTAAATCACGTAAGCT
Found at i:60917 original size:17 final size:17
Alignment explanation
Indices: 60897--60948 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
60887 CTCATTAATG
60897 AATATAACTCACTGATA
1 AATATAACTCACTGATA
**
60914 AATATAACTCGTTGATA
1 AATATAACTCACTGATA
*
60931 AATACAACTCACTGATA
1 AATATAACTCACTGATA
60948 A
1 A
60949 TACTCTTAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (17 bp):
AATATAACTCACTGATA
Left flanking sequence: Indices 60397 -- 60896
GCGTCAGAGTGAGCTATCAGTGGCTGTCAGTGAACTACAACCACCCTGTGCCCGCTGATTGTAAT
CACCATTGTTGGTAACCGAGGTAACCGGCATTGTTTCCGTGGCTCAGCGTGCCAGGGACGCCCGT
AGTGTTACATTGACTCTTGAACAGTGCGTTGTTTGCCCGAGATGAAAATAGTGACATCGTCGAGT
TTAAGGCAGTCGACCCGATGGCCAGACTGAAAAGCCTGGCTTGTAAAAAGCCTAGGTTGTAAGGT
TTTATTGGCTCTGTACACTGGCTGAACCAGTTGTCCGAGTCTTCCTTGCTTAACTAGGTATATAG
TCAACACTCAACTCTGGACCCATTTAATTTCACATTAAGCCATCCCATCACTTCTTCAGTGGCTG
TGCCCGTTAGCGATTCAGAAGTGAGCCTGACTGGTCGCTGCTGGAACATCTTCTCTGGGTTGGAG
GCGATTAGTTCTAAGCGACCTATGGATTGGTTCTACTCATTAATG
Right flanking sequence: Indices 60949 -- 61448
TACTCTTAGCTCTACTGGCATTGGATTTGGAGAACTCACACACAAACCCATCTCAGTCTGATCTC
AGCAATCAAATACATGGCTTCGTTAATCATCTCAATCACAGCCCAATGCAAAAGTTTTTGATCTC
ATCGTATCAGTCCTATTCAAGCGATCTTCATGAGGTCTTCGCTCTCCATCCTTTCAGCAGTAAAT
CACGTAAGCTTCGTCATCCTTCCTCCAGTCAATCACGATACAGTCAATCACAAGGCTTCGCTCCG
ATAAAGCCTTTCTATCCAGACGGGGGCTTGGCCCTTATACGTAAATCCTTCCCAGTCATCACACG
AGGGCTTCGCCCTCCAATCAACCCCTCCTACCAAACCTTCCACTTCGTTACTTTATCCTTTATTA
CCGTGCTATATTACACTACTTACTTCTTGGCAGTCAATCTCTTGACGTAGAAGGCCAACTCCTCG
CCCTCCAAAATGTAACCGTCACAACGGCCGCACTGGCCGGGTCTC
Found at i:63691 original size:15 final size:14
Alignment explanation
Indices: 63666--63695 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
63656 TACAATAATG
63666 AGAACCAAGGTGGT
1 AGAACCAAGGTGGT
63680 AGAACTCAAGGTGGT
1 AGAAC-CAAGGTGGT
63695 A
1 A
63696 AGATTAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.37, C:0.13, G:0.33, T:0.17
Consensus pattern (14 bp):
AGAACCAAGGTGGT
Left flanking sequence: Indices 63166 -- 63665
CCCTTCTACACCGCACCACCCTCAAACCCTTTTTTCTAACCCTCCCCCTTCTTTCTTCCCCCTCT
TCCTTTCCTTCTTTCTTCACCTTTCTTTTGCAGCCATCATGCACCCGCCGCACCCATCGCGTCAA
AATCCATCTCTATCGCGACGTCACCCCGGAGATGCTGGAGGCTATCTACGACGAGATCGAGATCG
AAGACTTCACGTTTGACCCTGTGACCCAGTTGTTCCAGTACCCGTGTCCCTGTGGCGACCGGTTT
GCGGTGCTGATCGACGACTTGGAGGACGGCGAGGACATCGCGGTGTGCCCGCTGTGCTCGTTGAT
GGTGCGGGTGATCTTTGAGCCGGAGGACTTGAAGGAGTACCGGGAACAGTTGGAGTAGGTGGTTG
AGGGAGAGCCCCAGCTTGATGCTGCCTGGCTGGTCCACGAGATCGATGATCGATCGACAGGGTTT
TATAGAAGGTAATGGTCCATGTGATAGATAGATAATACAATAATG
Right flanking sequence: Indices 63696 -- 64195
AGATTAGAACTCAAGGTCAGATTAGTATGAGTGTTCTTTGGCAAATGTGTGATTCATCATATTAG
GAGTGTTCTTTGGTAGGAGTGTTTCTTGGTCATGTGTGCTTCACCATTTTATTCCGTAAAATGAA
AATCTGTTATTTTTCAATAAAAGATGATTGTTGTCTCTTCAAATTCAAAATCTACTATTATGAAA
AATCATTATCACCATTTAACAATGTGTTACGTTACATTGCCCATAGACTTTAGACTCCAATAACA
CGTCGACCACTTAAACTTTCACTCTACGTCATATCCCTTCAACCGAGTCTTATCAGCGGGCTCCA
CCAACCAGCATTCTTCCATTGACCCGAGCCACATTCCCCGCATCACACCCCAACCACCACCACCA
GCCCTCCCTTCGTCCTACCATTCTCCCTTCTCTCCCTTCTCTTCCCCACCCAGTCTCGTGCTATT
ATTTTTTCCCACGCTTCTATTTTTTACCGGAGTTGTCATCGCGTA
Found at i:64361 original size:15 final size:15
Alignment explanation
Indices: 64341--64370 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64331 CCACCCACAC
64341 AGCAACCGCAACAAT
1 AGCAACCGCAACAAT
64356 AGCAACCGCAACAAT
1 AGCAACCGCAACAAT
64371 TGACCACGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.33, G:0.13, T:0.07
Consensus pattern (15 bp):
AGCAACCGCAACAAT
Left flanking sequence: Indices 63841 -- 64340
AATAAAAGATGATTGTTGTCTCTTCAAATTCAAAATCTACTATTATGAAAAATCATTATCACCAT
TTAACAATGTGTTACGTTACATTGCCCATAGACTTTAGACTCCAATAACACGTCGACCACTTAAA
CTTTCACTCTACGTCATATCCCTTCAACCGAGTCTTATCAGCGGGCTCCACCAACCAGCATTCTT
CCATTGACCCGAGCCACATTCCCCGCATCACACCCCAACCACCACCACCAGCCCTCCCTTCGTCC
TACCATTCTCCCTTCTCTCCCTTCTCTTCCCCACCCAGTCTCGTGCTATTATTTTTTCCCACGCT
TCTATTTTTTACCGGAGTTGTCATCGCGTAAATCCACTAGACACCACAAACCCCACCCCCAGGCG
ACTAGTCACATTAGTGGGGCTCTACGCACGGCAGCTGGAACCGGCCTATAAATAACCGTTACCCG
AATAGGCTAACGGGGCCTGTTTCACGGGGGTATTACCACCCACAC
Right flanking sequence: Indices 64371 -- 64870
TGACCACGCAATCCACCCCCGCGCCCGGACACCACCGCTGCACGGCCCTCGCGGACCGCCCCTCG
CTAGCGCACCCCCGACAGCCCGAACCACCGCTACCGTTTCCAGAATATTTTTCGCAATCTGGATC
CGAAATGCAGACATCAAACGACAAAAACGCTATCAGCCGCACCAGCCCGCCTCGGGTGTCTCGTG
AGGCCCGCAATTATGCAGGATAATGCGGAGATTATTCCGCTTTGGGCGAGCATCAAATACGAGCC
GCGACGCTCGCCGCTGGCGCCGGTGGTGGTGGAGCCGCCGCAAAAATGCCCCCCGGGTTATGTTG
CTTTTGCCGTCGCCATTGCTCCGCCCCGTTTCTGTTTTCGCCGTTGCGACCGTTTGGCGGTTGGG
TCGGTTCCCCCTTGCGGTGCCCCAAAAAATAATATTAGTGTTTTAGCCCTGCTTTGCAGCCAGTC
ATGTCATTTTGTCGGTGCCCCCACGCCCTCGGTGGACGGTGCGAC
Found at i:65006 original size:11 final size:11
Alignment explanation
Indices: 64991--65055 Score: 121
Period size: 11 Copynumber: 5.9 Consensus size: 11
64981 GGCACTGCGT
64991 CAGCACCGCAG
1 CAGCACCGCAG
*
65002 AAGCACCGCAG
1 CAGCACCGCAG
65013 CAGCACCGCAG
1 CAGCACCGCAG
65024 CAGCACCGCAG
1 CAGCACCGCAG
65035 CAGCACCGCAG
1 CAGCACCGCAG
65046 CAGCACCGCA
1 CAGCACCGCA
65056 ACACCGAGGA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 52 1.00
ACGTcount: A:0.29, C:0.45, G:0.26, T:0.00
Consensus pattern (11 bp):
CAGCACCGCAG
Left flanking sequence: Indices 64491 -- 64990
AATCTGGATCCGAAATGCAGACATCAAACGACAAAAACGCTATCAGCCGCACCAGCCCGCCTCGG
GTGTCTCGTGAGGCCCGCAATTATGCAGGATAATGCGGAGATTATTCCGCTTTGGGCGAGCATCA
AATACGAGCCGCGACGCTCGCCGCTGGCGCCGGTGGTGGTGGAGCCGCCGCAAAAATGCCCCCCG
GGTTATGTTGCTTTTGCCGTCGCCATTGCTCCGCCCCGTTTCTGTTTTCGCCGTTGCGACCGTTT
GGCGGTTGGGTCGGTTCCCCCTTGCGGTGCCCCAAAAAATAATATTAGTGTTTTAGCCCTGCTTT
GCAGCCAGTCATGTCATTTTGTCGGTGCCCCCACGCCCTCGGTGGACGGTGCGACCACGAGCGAG
GGCCCGGAGTTCCAGGGTTGGCCTCGTGACCGCAGTGGCACGGATGACGGTACCCCTGGGGCCCG
ACAATGGCCATTGTCGCGAGAGATATTTTGACACGGGCACTGCGT
Right flanking sequence: Indices 65056 -- 65555
ACACCGAGGACCAGGCGAAGCCACCAGGAATGTGGTCATCAGTGGCAGCGGGCTGCGGAGCCTGC
GGAGCCTGTGGTAGCGCCGGCCCGCTGTCGTCGGGTGGCCACGCGTGGCAGTGAGGGGAAGCACC
CCGCCTAGGAAACCTTATTTGGGTTTGTGGTGCGGTGGAGATACGAGAGCAAGAGGAGATACCGG
GGTGATCACGGTTGCGATGGGAAGGGGGACGGTGGACGGTGTCGTGGGGGTGTGTCGGGAGACGG
GTGTCGGGTGCGCTGTGGCGGTGACCAATGGGGAATACGAGGTCGGGGGATCCCGAGACGGGTGT
GGAAGTGCGGAAAAGACCGAGGGGTGGGGGTTGGTGCAGTGGTGGGTGGTGGGCGAGTGGTGGAG
GGGTGGTGGGTCTACGTGGTCTATTGGTGGGGGGTACGGTGGATATACGGTGGGTTTCGGAGGGT
GGTGGGGGTGGGTGGGTGTCTGGTCGGGTTTTGGTGGGTTTTTCC
Found at i:65426 original size:18 final size:18
Alignment explanation
Indices: 65398--65453 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 18
65388 CGGAAAAGAC
*
65398 CGAGGGGTGGGGGTTGGTG
1 CGAGTGGTGGGGG-TGGTG
65417 C-AGTGGTGGGTGGTGG-G
1 CGAGTGGTGGG-GGTGGTG
65434 CGAGTGGTGGAGGGGTGGTG
1 CGAGTGGT-G-GGGGTGGTG
65454 GGTCTACGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
17 2 0.06
18 17 0.55
19 9 0.29
20 3 0.10
ACGTcount: A:0.07, C:0.05, G:0.66, T:0.21
Consensus pattern (18 bp):
CGAGTGGTGGGGGTGGTG
Left flanking sequence: Indices 64898 -- 65397
TTGGCCTCGTGACCGCAGTGGCACGGATGACGGTACCCCTGGGGCCCGACAATGGCCATTGTCGC
GAGAGATATTTTGACACGGGCACTGCGTCAGCACCGCAGAAGCACCGCAGCAGCACCGCAGCAGC
ACCGCAGCAGCACCGCAGCAGCACCGCAACACCGAGGACCAGGCGAAGCCACCAGGAATGTGGTC
ATCAGTGGCAGCGGGCTGCGGAGCCTGCGGAGCCTGTGGTAGCGCCGGCCCGCTGTCGTCGGGTG
GCCACGCGTGGCAGTGAGGGGAAGCACCCCGCCTAGGAAACCTTATTTGGGTTTGTGGTGCGGTG
GAGATACGAGAGCAAGAGGAGATACCGGGGTGATCACGGTTGCGATGGGAAGGGGGACGGTGGAC
GGTGTCGTGGGGGTGTGTCGGGAGACGGGTGTCGGGTGCGCTGTGGCGGTGACCAATGGGGAATA
CGAGGTCGGGGGATCCCGAGACGGGTGTGGAAGTGCGGAAAAGAC
Right flanking sequence: Indices 65454 -- 65953
GGTCTACGTGGTCTATTGGTGGGGGGTACGGTGGATATACGGTGGGTTTCGGAGGGTGGTGGGGG
TGGGTGGGTGTCTGGTCGGGTTTTGGTGGGTTTTTCCGGTGGCTGCAAAATGGGTAAGAAAGGAA
GGGTGGGTAGAGTAAAGGAAGGGGTGGGCGGAATGAAGGAAGGGGTGTAGGCGGTGTGTATATGT
GTAAATGGTGTTTGAGTGCTTTGCTGTGGCTAGGCAATTGGGTAGTTTTTGGAATGGTTCTCTGG
TTTCTCTGATTTCCGGTATAGACGGTGATGGTGGTGGTAGTGACAAGTTTAGTGGGAGGTAGTGA
AGACTGGTCGGTGTGGACCAGTCTGTGAGAGTGGTTTTGCACGTGTCGGTGTCTTTAGTGTATTT
TCTACTCTCCAGCGTCGTGTGTTTCTGGCTGCAAATAGTAAGAAGGGTGGTATTGATTTCGAAAA
GCAAATGAAGTGACCACAGAATAGTTGTCACTACTCTATTGGAGT
Found at i:65602 original size:20 final size:19
Alignment explanation
Indices: 65569--65611 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
65559 GGCTGCAAAA
65569 TGGGTAAGAAAGGAA-GGG
1 TGGGTAAGAAAGGAAGGGG
65587 TGGGTAGAGTAAAGGAAGGGG
1 TGGGTA-AG-AAAGGAAGGGG
65608 TGGG
1 TGGG
65612 CGGAATGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 2 0.09
20 7 0.32
21 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.53, T:0.14
Consensus pattern (19 bp):
TGGGTAAGAAAGGAAGGGG
Left flanking sequence: Indices 65069 -- 65568
GGCGAAGCCACCAGGAATGTGGTCATCAGTGGCAGCGGGCTGCGGAGCCTGCGGAGCCTGTGGTA
GCGCCGGCCCGCTGTCGTCGGGTGGCCACGCGTGGCAGTGAGGGGAAGCACCCCGCCTAGGAAAC
CTTATTTGGGTTTGTGGTGCGGTGGAGATACGAGAGCAAGAGGAGATACCGGGGTGATCACGGTT
GCGATGGGAAGGGGGACGGTGGACGGTGTCGTGGGGGTGTGTCGGGAGACGGGTGTCGGGTGCGC
TGTGGCGGTGACCAATGGGGAATACGAGGTCGGGGGATCCCGAGACGGGTGTGGAAGTGCGGAAA
AGACCGAGGGGTGGGGGTTGGTGCAGTGGTGGGTGGTGGGCGAGTGGTGGAGGGGTGGTGGGTCT
ACGTGGTCTATTGGTGGGGGGTACGGTGGATATACGGTGGGTTTCGGAGGGTGGTGGGGGTGGGT
GGGTGTCTGGTCGGGTTTTGGTGGGTTTTTCCGGTGGCTGCAAAA
Right flanking sequence: Indices 65612 -- 66111
CGGAATGAAGGAAGGGGTGTAGGCGGTGTGTATATGTGTAAATGGTGTTTGAGTGCTTTGCTGTG
GCTAGGCAATTGGGTAGTTTTTGGAATGGTTCTCTGGTTTCTCTGATTTCCGGTATAGACGGTGA
TGGTGGTGGTAGTGACAAGTTTAGTGGGAGGTAGTGAAGACTGGTCGGTGTGGACCAGTCTGTGA
GAGTGGTTTTGCACGTGTCGGTGTCTTTAGTGTATTTTCTACTCTCCAGCGTCGTGTGTTTCTGG
CTGCAAATAGTAAGAAGGGTGGTATTGATTTCGAAAAGCAAATGAAGTGACCACAGAATAGTTGT
CACTACTCTATTGGAGTAGTGGAAGTTTCAACGACTTTCATCGACTCTTGGAGTACCACCACTGG
TTTCAGCTTTGTGCAAGGCTCTCTACTTTTTCTTATGACGTCTCAATGGCTGCAAATTGTCAAAG
AAGACGTTGATTAAGGCATTACGAATGGGTCCACACCAAAATTGC
Found at i:65610 original size:21 final size:21
Alignment explanation
Indices: 65569--65630 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
65559 GGCTGCAAAA
65569 TGGGTA-AG-AAAGGAA-GGG
1 TGGGTAGAGTAAAGGAAGGGG
65587 TGGGTAGAGTAAAGGAAGGGG
1 TGGGTAGAGTAAAGGAAGGGG
** * *
65608 TGGGCGGAATGAAGGAAGGGG
1 TGGGTAGAGTAAAGGAAGGGG
65629 TG
1 TG
65631 TAGGCGGTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 6 0.16
19 2 0.05
20 7 0.19
21 22 0.59
ACGTcount: A:0.32, C:0.02, G:0.53, T:0.13
Consensus pattern (21 bp):
TGGGTAGAGTAAAGGAAGGGG
Left flanking sequence: Indices 65069 -- 65568
GGCGAAGCCACCAGGAATGTGGTCATCAGTGGCAGCGGGCTGCGGAGCCTGCGGAGCCTGTGGTA
GCGCCGGCCCGCTGTCGTCGGGTGGCCACGCGTGGCAGTGAGGGGAAGCACCCCGCCTAGGAAAC
CTTATTTGGGTTTGTGGTGCGGTGGAGATACGAGAGCAAGAGGAGATACCGGGGTGATCACGGTT
GCGATGGGAAGGGGGACGGTGGACGGTGTCGTGGGGGTGTGTCGGGAGACGGGTGTCGGGTGCGC
TGTGGCGGTGACCAATGGGGAATACGAGGTCGGGGGATCCCGAGACGGGTGTGGAAGTGCGGAAA
AGACCGAGGGGTGGGGGTTGGTGCAGTGGTGGGTGGTGGGCGAGTGGTGGAGGGGTGGTGGGTCT
ACGTGGTCTATTGGTGGGGGGTACGGTGGATATACGGTGGGTTTCGGAGGGTGGTGGGGGTGGGT
GGGTGTCTGGTCGGGTTTTGGTGGGTTTTTCCGGTGGCTGCAAAA
Right flanking sequence: Indices 65631 -- 66130
TAGGCGGTGTGTATATGTGTAAATGGTGTTTGAGTGCTTTGCTGTGGCTAGGCAATTGGGTAGTT
TTTGGAATGGTTCTCTGGTTTCTCTGATTTCCGGTATAGACGGTGATGGTGGTGGTAGTGACAAG
TTTAGTGGGAGGTAGTGAAGACTGGTCGGTGTGGACCAGTCTGTGAGAGTGGTTTTGCACGTGTC
GGTGTCTTTAGTGTATTTTCTACTCTCCAGCGTCGTGTGTTTCTGGCTGCAAATAGTAAGAAGGG
TGGTATTGATTTCGAAAAGCAAATGAAGTGACCACAGAATAGTTGTCACTACTCTATTGGAGTAG
TGGAAGTTTCAACGACTTTCATCGACTCTTGGAGTACCACCACTGGTTTCAGCTTTGTGCAAGGC
TCTCTACTTTTTCTTATGACGTCTCAATGGCTGCAAATTGTCAAAGAAGACGTTGATTAAGGCAT
TACGAATGGGTCCACACCAAAATTGCTGAGTTTAAACAACCAAAA
Found at i:66457 original size:9 final size:9
Alignment explanation
Indices: 66445--66488 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
66435 CACCATTACA
66445 ACCACCACT
1 ACCACCACT
66454 ACCACCACT
1 ACCACCACT
*
66463 ACCACCACA
1 ACCACCACT
66472 ACCACCA-T
1 ACCACCACT
66480 AACCACCAC
1 -ACCACCAC
66489 CTTTTCCACC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.39, C:0.55, G:0.00, T:0.07
Consensus pattern (9 bp):
ACCACCACT
Left flanking sequence: Indices 65945 -- 66444
TATTGGAGTAGTGGAAGTTTCAACGACTTTCATCGACTCTTGGAGTACCACCACTGGTTTCAGCT
TTGTGCAAGGCTCTCTACTTTTTCTTATGACGTCTCAATGGCTGCAAATTGTCAAAGAAGACGTT
GATTAAGGCATTACGAATGGGTCCACACCAAAATTGCTGAGTTTAAACAACCAAAAGCTTGCTCA
GTCCACCCTCTGTGTTGCCACATAAAATATTTTACCCGTTTTTCACCTCTTTTGTTCCTCAGTCT
GTCTTCTTTCTGCTATTTTAGCCACCCCACCGAGTCTGAAAGTACACCCGCTCCACAGGCCAACC
AACGACTCCAGCCACACAGAGTGGTCCACACCACACACCCACCCACCTGAGTGGACGAAACCCCC
CCTTGCCTTCACACACCAGCCCGTTACCATCACCAGAACCACCTCCACCAAAACCACCCAAAGAC
ACCATTTTAAACCACACAATCACAATCACTACAGCCACCATTACA
Right flanking sequence: Indices 66489 -- 66988
CTTTTCCACCTAAACCTCTCCACCACTACTATTCCCACTAAAATCCCCACTATTCCCACTATCCT
CTCTACACCCACCCACCCACACCTCTCCACCACACCTCTCCACCACACCTCTCCACCACACCTCT
CCCCTTCTCCTACCAATACTCTCCCCCTCCCCTCTCCCTACATTTCCCCCCCCTCCTACACTTCC
TACTCTCCTTCTTCTAATTAATACACACCGGTAATGTTTATTCCCTATCAAAGGGCGCTGTCCAG
ACAGCGTTACAGCAACAAGTTCAGCACGCTCATTTTCTCGTCGTCCTTGGCGTCCACCTCCATCG
CCAACAGCGTCTCCAGCCCCAGGCGCTTCGGGGGCACCAGCGTGGGCAGCGACCCCGCGCCCGCC
GCCAGGGCCGCCAGCAGCACCAGAAACCGCGCCAGCGGCGTCATCACGGGGCTGTTGAACGCCAG
GTTGCCGCTCAAGTTGCGTTTGTGCCCCAGTGCCGCCAGCACCAG
Found at i:66588 original size:13 final size:13
Alignment explanation
Indices: 66570--66620 Score: 102
Period size: 13 Copynumber: 3.9 Consensus size: 13
66560 ACCCACCCAC
66570 CCACACCTCTCCA
1 CCACACCTCTCCA
66583 CCACACCTCTCCA
1 CCACACCTCTCCA
66596 CCACACCTCTCCA
1 CCACACCTCTCCA
66609 CCACACCTCTCC
1 CCACACCTCTCC
66621 CCTTCTCCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.22, C:0.63, G:0.00, T:0.16
Consensus pattern (13 bp):
CCACACCTCTCCA
Left flanking sequence: Indices 66070 -- 66569
ACGTTGATTAAGGCATTACGAATGGGTCCACACCAAAATTGCTGAGTTTAAACAACCAAAAGCTT
GCTCAGTCCACCCTCTGTGTTGCCACATAAAATATTTTACCCGTTTTTCACCTCTTTTGTTCCTC
AGTCTGTCTTCTTTCTGCTATTTTAGCCACCCCACCGAGTCTGAAAGTACACCCGCTCCACAGGC
CAACCAACGACTCCAGCCACACAGAGTGGTCCACACCACACACCCACCCACCTGAGTGGACGAAA
CCCCCCCTTGCCTTCACACACCAGCCCGTTACCATCACCAGAACCACCTCCACCAAAACCACCCA
AAGACACCATTTTAAACCACACAATCACAATCACTACAGCCACCATTACAACCACCACTACCACC
ACTACCACCACAACCACCATAACCACCACCTTTTCCACCTAAACCTCTCCACCACTACTATTCCC
ACTAAAATCCCCACTATTCCCACTATCCTCTCTACACCCACCCAC
Right flanking sequence: Indices 66621 -- 67120
CCTTCTCCTACCAATACTCTCCCCCTCCCCTCTCCCTACATTTCCCCCCCCTCCTACACTTCCTA
CTCTCCTTCTTCTAATTAATACACACCGGTAATGTTTATTCCCTATCAAAGGGCGCTGTCCAGAC
AGCGTTACAGCAACAAGTTCAGCACGCTCATTTTCTCGTCGTCCTTGGCGTCCACCTCCATCGCC
AACAGCGTCTCCAGCCCCAGGCGCTTCGGGGGCACCAGCGTGGGCAGCGACCCCGCGCCCGCCGC
CAGGGCCGCCAGCAGCACCAGAAACCGCGCCAGCGGCGTCATCACGGGGCTGTTGAACGCCAGGT
TGCCGCTCAAGTTGCGTTTGTGCCCCAGTGCCGCCAGCACCAGTCCGTGCGCCAGCCCCGGCCCC
GCCCCCAGAATCAGTGCCAAGTGCGCCGCGGCCGCGTGCACGTCCTTGAGCGGGTTGGGGAACAA
GTCGGGCGCGTACAGCAGCCGCCGCAGCAGCGCCAGCGTCAGCGG
Found at i:67642 original size:12 final size:12
Alignment explanation
Indices: 67625--67661 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
67615 GGGCGGGGCC
*
67625 GGGGCCAGAGGA
1 GGGGCCAGAAGA
*
67637 GGGGCCGGAAGA
1 GGGGCCAGAAGA
67649 GGGGCCAGAAGA
1 GGGGCCAGAAGA
67661 G
1 G
67662 CCGGAGGAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.57, T:0.00
Consensus pattern (12 bp):
GGGGCCAGAAGA
Left flanking sequence: Indices 67125 -- 67624
AACAACTCGAAGTGCAGCACCAGGTTGTTGCGCAGCGCCTGGGTCAGCAAGAGGAGGGGGCTGCC
GTGGTACGGGGGCAGCGCCAGCCCACCCACCAGGGGCAAGTTGGGGTGGGACGCCGCCAACAGCG
AGTTGTACAAGTGCAGCAGCACCAGCAGGTGGCGGCGGCCCACCAGGTCCTCGAAGAGCCGGCGC
TTGGTGGGGAGGATGGGCGGGAGCACGGGGGCGGCGGTGGCCAGGGTGGCCAGGGTGGCGCCCAC
GTCGAACAGCGCCAGCCGGTGCGGCAGTGCGCCGGGGAGCTGCTGGCGCATGGGCAGCGCCAGGT
TGGCGTCGGGCTTGCCGAACATCAGGGTGTTGAAGGAGATCTGGGGCAAGTGCGGCACCTGGGGG
TACTGCGACGGGGTCGGGGCGAACTTGGCGGGGGGCGGGAGCGCCGCCGCGGGCGCGTGGGGGTG
GCCGGCGACCCCGGACACGCTGCCGGACTGGGCAGGGGCGGGGCC
Right flanking sequence: Indices 67662 -- 68161
CCGGAGGAGGCACCAGAGGCACCAGAGGCACCAGAGGCTGAGGCACCAGAGGCAGAGGCACCAGA
GGCAGAGGCACCAGGGGCACCAGTGGTGGTAGAGATGTGACCGGTGGTGGTGGAGCCAGGGTTGC
CGGTGGAGCCAGAGTCAGCAGAGCCACCAGGCCCAGTAACACCAGGCCCAGTAACACCAGGCCCA
GAACCGTTTCCAGACCCAACCCCGTTCCCACTGGTTACACCCCCGCTCCCTGCCCCGCCCCCACT
CGCCCCCAGAATCAGGTTCCGCGCGCTCTCGCCGCTCTCCTCGTCCTCCAGGTCCGAGCGCTTCT
GCAGCGCCCGCCGTCTGCGGTTGGCACCGCCGTTCCACCAGTTCTTGATGGCGTTGTCGGAGCGC
CCGTTCAAGTGCCGCAGGATCTCCGCCCACTTCTTGCCGTACTTGGCCACCAACACCTCGATCAA
CTCGCCCTCCTCGGCGGTGATGGGGCTGCGGTTGAGCAGCGGCTT
Found at i:67682 original size:9 final size:9
Alignment explanation
Indices: 67668--67749 Score: 83
Period size: 9 Copynumber: 10.1 Consensus size: 9
67658 AGAGCCGGAG
67668 GAGGCACCA
1 GAGGCACCA
67677 GAGGCACCA
1 GAGGCACCA
67686 GAGGCACCA
1 GAGGCACCA
*
67695 GAGG---CT
1 GAGGCACCA
67701 GAGGCACCA
1 GAGGCACCA
67710 GAGG---CA
1 GAGGCACCA
67716 GAGGCACCA
1 GAGGCACCA
67725 GAGG---CA
1 GAGGCACCA
67731 GAGGCACCA
1 GAGGCACCA
*
67740 GGGGCACCA
1 GAGGCACCA
67749 G
1 G
67750 TGGTGGTAGA
Statistics
Matches: 61, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
6 17 0.28
9 44 0.72
ACGTcount: A:0.30, C:0.29, G:0.39, T:0.01
Consensus pattern (9 bp):
GAGGCACCA
Left flanking sequence: Indices 67168 -- 67667
TCAGCAAGAGGAGGGGGCTGCCGTGGTACGGGGGCAGCGCCAGCCCACCCACCAGGGGCAAGTTG
GGGTGGGACGCCGCCAACAGCGAGTTGTACAAGTGCAGCAGCACCAGCAGGTGGCGGCGGCCCAC
CAGGTCCTCGAAGAGCCGGCGCTTGGTGGGGAGGATGGGCGGGAGCACGGGGGCGGCGGTGGCCA
GGGTGGCCAGGGTGGCGCCCACGTCGAACAGCGCCAGCCGGTGCGGCAGTGCGCCGGGGAGCTGC
TGGCGCATGGGCAGCGCCAGGTTGGCGTCGGGCTTGCCGAACATCAGGGTGTTGAAGGAGATCTG
GGGCAAGTGCGGCACCTGGGGGTACTGCGACGGGGTCGGGGCGAACTTGGCGGGGGGCGGGAGCG
CCGCCGCGGGCGCGTGGGGGTGGCCGGCGACCCCGGACACGCTGCCGGACTGGGCAGGGGCGGGG
CCGGGGCCAGAGGAGGGGCCGGAAGAGGGGCCAGAAGAGCCGGAG
Right flanking sequence: Indices 67750 -- 68249
TGGTGGTAGAGATGTGACCGGTGGTGGTGGAGCCAGGGTTGCCGGTGGAGCCAGAGTCAGCAGAG
CCACCAGGCCCAGTAACACCAGGCCCAGTAACACCAGGCCCAGAACCGTTTCCAGACCCAACCCC
GTTCCCACTGGTTACACCCCCGCTCCCTGCCCCGCCCCCACTCGCCCCCAGAATCAGGTTCCGCG
CGCTCTCGCCGCTCTCCTCGTCCTCCAGGTCCGAGCGCTTCTGCAGCGCCCGCCGTCTGCGGTTG
GCACCGCCGTTCCACCAGTTCTTGATGGCGTTGTCGGAGCGCCCGTTCAAGTGCCGCAGGATCTC
CGCCCACTTCTTGCCGTACTTGGCCACCAACACCTCGATCAACTCGCCCTCCTCGGCGGTGATGG
GGCTGCGGTTGAGCAGCGGCTTCAAGTTCTGGTGGTAGCGCTCGCGGCACTGCTTGGGCGTCCGC
GTCAGCAACAGGTTCAGGATGCGGACCCAGTTGGTGGCGCCAAAC
Found at i:67706 original size:15 final size:15
Alignment explanation
Indices: 67668--67745 Score: 111
Period size: 15 Copynumber: 5.0 Consensus size: 15
67658 AGAGCCGGAG
67668 GAGGCACCAGAGGCACCA
1 GAGGCACCAGAGG---CA
*
67686 GAGGCACCAGAGGCT
1 GAGGCACCAGAGGCA
67701 GAGGCACCAGAGGCA
1 GAGGCACCAGAGGCA
67716 GAGGCACCAGAGGCA
1 GAGGCACCAGAGGCA
*
67731 GAGGCACCAGGGGCA
1 GAGGCACCAGAGGCA
67746 CCAGTGGTGG
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
15 44 0.77
18 13 0.23
ACGTcount: A:0.31, C:0.28, G:0.40, T:0.01
Consensus pattern (15 bp):
GAGGCACCAGAGGCA
Left flanking sequence: Indices 67168 -- 67667
TCAGCAAGAGGAGGGGGCTGCCGTGGTACGGGGGCAGCGCCAGCCCACCCACCAGGGGCAAGTTG
GGGTGGGACGCCGCCAACAGCGAGTTGTACAAGTGCAGCAGCACCAGCAGGTGGCGGCGGCCCAC
CAGGTCCTCGAAGAGCCGGCGCTTGGTGGGGAGGATGGGCGGGAGCACGGGGGCGGCGGTGGCCA
GGGTGGCCAGGGTGGCGCCCACGTCGAACAGCGCCAGCCGGTGCGGCAGTGCGCCGGGGAGCTGC
TGGCGCATGGGCAGCGCCAGGTTGGCGTCGGGCTTGCCGAACATCAGGGTGTTGAAGGAGATCTG
GGGCAAGTGCGGCACCTGGGGGTACTGCGACGGGGTCGGGGCGAACTTGGCGGGGGGCGGGAGCG
CCGCCGCGGGCGCGTGGGGGTGGCCGGCGACCCCGGACACGCTGCCGGACTGGGCAGGGGCGGGG
CCGGGGCCAGAGGAGGGGCCGGAAGAGGGGCCAGAAGAGCCGGAG
Right flanking sequence: Indices 67746 -- 68245
CCAGTGGTGGTAGAGATGTGACCGGTGGTGGTGGAGCCAGGGTTGCCGGTGGAGCCAGAGTCAGC
AGAGCCACCAGGCCCAGTAACACCAGGCCCAGTAACACCAGGCCCAGAACCGTTTCCAGACCCAA
CCCCGTTCCCACTGGTTACACCCCCGCTCCCTGCCCCGCCCCCACTCGCCCCCAGAATCAGGTTC
CGCGCGCTCTCGCCGCTCTCCTCGTCCTCCAGGTCCGAGCGCTTCTGCAGCGCCCGCCGTCTGCG
GTTGGCACCGCCGTTCCACCAGTTCTTGATGGCGTTGTCGGAGCGCCCGTTCAAGTGCCGCAGGA
TCTCCGCCCACTTCTTGCCGTACTTGGCCACCAACACCTCGATCAACTCGCCCTCCTCGGCGGTG
ATGGGGCTGCGGTTGAGCAGCGGCTTCAAGTTCTGGTGGTAGCGCTCGCGGCACTGCTTGGGCGT
CCGCGTCAGCAACAGGTTCAGGATGCGGACCCAGTTGGTGGCGCC
Found at i:67728 original size:24 final size:25
Alignment explanation
Indices: 67668--67730 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
67658 AGAGCCGGAG
67668 GAGGCACCAGAGGCACCAGAGGCACCA
1 GAGGCACCAGAGGCACCAGAGG--CCA
*
67695 GAGG---CTGAGGCACCAGAGG-CA
1 GAGGCACCAGAGGCACCAGAGGCCA
67716 GAGGCACCAGAGGCA
1 GAGGCACCAGAGGCA
67731 GAGGCACCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 6 0.19
24 21 0.68
27 4 0.13
ACGTcount: A:0.32, C:0.29, G:0.38, T:0.02
Consensus pattern (25 bp):
GAGGCACCAGAGGCACCAGAGGCCA
Left flanking sequence: Indices 67168 -- 67667
TCAGCAAGAGGAGGGGGCTGCCGTGGTACGGGGGCAGCGCCAGCCCACCCACCAGGGGCAAGTTG
GGGTGGGACGCCGCCAACAGCGAGTTGTACAAGTGCAGCAGCACCAGCAGGTGGCGGCGGCCCAC
CAGGTCCTCGAAGAGCCGGCGCTTGGTGGGGAGGATGGGCGGGAGCACGGGGGCGGCGGTGGCCA
GGGTGGCCAGGGTGGCGCCCACGTCGAACAGCGCCAGCCGGTGCGGCAGTGCGCCGGGGAGCTGC
TGGCGCATGGGCAGCGCCAGGTTGGCGTCGGGCTTGCCGAACATCAGGGTGTTGAAGGAGATCTG
GGGCAAGTGCGGCACCTGGGGGTACTGCGACGGGGTCGGGGCGAACTTGGCGGGGGGCGGGAGCG
CCGCCGCGGGCGCGTGGGGGTGGCCGGCGACCCCGGACACGCTGCCGGACTGGGCAGGGGCGGGG
CCGGGGCCAGAGGAGGGGCCGGAAGAGGGGCCAGAAGAGCCGGAG
Right flanking sequence: Indices 67731 -- 68230
GAGGCACCAGGGGCACCAGTGGTGGTAGAGATGTGACCGGTGGTGGTGGAGCCAGGGTTGCCGGT
GGAGCCAGAGTCAGCAGAGCCACCAGGCCCAGTAACACCAGGCCCAGTAACACCAGGCCCAGAAC
CGTTTCCAGACCCAACCCCGTTCCCACTGGTTACACCCCCGCTCCCTGCCCCGCCCCCACTCGCC
CCCAGAATCAGGTTCCGCGCGCTCTCGCCGCTCTCCTCGTCCTCCAGGTCCGAGCGCTTCTGCAG
CGCCCGCCGTCTGCGGTTGGCACCGCCGTTCCACCAGTTCTTGATGGCGTTGTCGGAGCGCCCGT
TCAAGTGCCGCAGGATCTCCGCCCACTTCTTGCCGTACTTGGCCACCAACACCTCGATCAACTCG
CCCTCCTCGGCGGTGATGGGGCTGCGGTTGAGCAGCGGCTTCAAGTTCTGGTGGTAGCGCTCGCG
GCACTGCTTGGGCGTCCGCGTCAGCAACAGGTTCAGGATGCGGAC
Found at i:67834 original size:15 final size:15
Alignment explanation
Indices: 67816--67857 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
67806 TCAGCAGAGC
67816 CACCAGGCCCAGTAA
1 CACCAGGCCCAGTAA
67831 CACCAGGCCCAGTAA
1 CACCAGGCCCAGTAA
67846 CACCAGGCCCAG
1 CACCAGGCCCAG
67858 AACCGTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.31, C:0.43, G:0.21, T:0.05
Consensus pattern (15 bp):
CACCAGGCCCAGTAA
Left flanking sequence: Indices 67316 -- 67815
GCGCTTGGTGGGGAGGATGGGCGGGAGCACGGGGGCGGCGGTGGCCAGGGTGGCCAGGGTGGCGC
CCACGTCGAACAGCGCCAGCCGGTGCGGCAGTGCGCCGGGGAGCTGCTGGCGCATGGGCAGCGCC
AGGTTGGCGTCGGGCTTGCCGAACATCAGGGTGTTGAAGGAGATCTGGGGCAAGTGCGGCACCTG
GGGGTACTGCGACGGGGTCGGGGCGAACTTGGCGGGGGGCGGGAGCGCCGCCGCGGGCGCGTGGG
GGTGGCCGGCGACCCCGGACACGCTGCCGGACTGGGCAGGGGCGGGGCCGGGGCCAGAGGAGGGG
CCGGAAGAGGGGCCAGAAGAGCCGGAGGAGGCACCAGAGGCACCAGAGGCACCAGAGGCTGAGGC
ACCAGAGGCAGAGGCACCAGAGGCAGAGGCACCAGGGGCACCAGTGGTGGTAGAGATGTGACCGG
TGGTGGTGGAGCCAGGGTTGCCGGTGGAGCCAGAGTCAGCAGAGC
Right flanking sequence: Indices 67858 -- 68357
AACCGTTTCCAGACCCAACCCCGTTCCCACTGGTTACACCCCCGCTCCCTGCCCCGCCCCCACTC
GCCCCCAGAATCAGGTTCCGCGCGCTCTCGCCGCTCTCCTCGTCCTCCAGGTCCGAGCGCTTCTG
CAGCGCCCGCCGTCTGCGGTTGGCACCGCCGTTCCACCAGTTCTTGATGGCGTTGTCGGAGCGCC
CGTTCAAGTGCCGCAGGATCTCCGCCCACTTCTTGCCGTACTTGGCCACCAACACCTCGATCAAC
TCGCCCTCCTCGGCGGTGATGGGGCTGCGGTTGAGCAGCGGCTTCAAGTTCTGGTGGTAGCGCTC
GCGGCACTGCTTGGGCGTCCGCGTCAGCAACAGGTTCAGGATGCGGACCCAGTTGGTGGCGCCAA
ACACCGCGATCAAGTCCAAGAGCTTCTTGTCCTCGAGGGGCAGCCAGGGCCCGCGCCGGGTCAGC
GCCAGGGGCAGCGGCTGCGCCGGGGGCGGCGGCGCCAGCATCGGG
Found at i:68338 original size:18 final size:18
Alignment explanation
Indices: 68311--68345 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68301 CGCCGGGTCA
68311 GCGCCAGGGGCAGCGGCT
1 GCGCCAGGGGCAGCGGCT
* *
68329 GCGCCGGGGGCGGCGGC
1 GCGCCAGGGGCAGCGGC
68346 GCCAGCATCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.34, G:0.57, T:0.03
Consensus pattern (18 bp):
GCGCCAGGGGCAGCGGCT
Left flanking sequence: Indices 67811 -- 68310
AGAGCCACCAGGCCCAGTAACACCAGGCCCAGTAACACCAGGCCCAGAACCGTTTCCAGACCCAA
CCCCGTTCCCACTGGTTACACCCCCGCTCCCTGCCCCGCCCCCACTCGCCCCCAGAATCAGGTTC
CGCGCGCTCTCGCCGCTCTCCTCGTCCTCCAGGTCCGAGCGCTTCTGCAGCGCCCGCCGTCTGCG
GTTGGCACCGCCGTTCCACCAGTTCTTGATGGCGTTGTCGGAGCGCCCGTTCAAGTGCCGCAGGA
TCTCCGCCCACTTCTTGCCGTACTTGGCCACCAACACCTCGATCAACTCGCCCTCCTCGGCGGTG
ATGGGGCTGCGGTTGAGCAGCGGCTTCAAGTTCTGGTGGTAGCGCTCGCGGCACTGCTTGGGCGT
CCGCGTCAGCAACAGGTTCAGGATGCGGACCCAGTTGGTGGCGCCAAACACCGCGATCAAGTCCA
AGAGCTTCTTGTCCTCGAGGGGCAGCCAGGGCCCGCGCCGGGTCA
Right flanking sequence: Indices 68346 -- 68845
GCCAGCATCGGGGCCGCCATCGGGGGCGCCATCGGCTGCCCCACCCCGGGGGGCGGCTGCCCCCT
GGCGAACGGGTGCCCGGCCATGGGGGTGGGCAACGGTTGCGGCGGCGGCTGCGGGTGGTGCGGCG
GCGGCAACGGGTGCTGGGACGACTGCGGGTAGTAGTACATGTGGCCGTTGGGGTAGTTCATCGCC
AACTGTGCTCTGAGGTCCTCACCGGGTTTGCGAGGGGCACCGTGCGCTTTTTTGGGGCAAGGAAA
AAAGTTGGTGGTTTTGTTATGGGGGCGGCAGGTGACCAGAAAAAATAACTTGGCAGGAAATGTGG
GAGGGTGGGGGAGGGCCCCGAGCGAGGGTGGGGCCGGGCGCGCGGAGGGTGCGGGCCCGCGCGGG
AGGAGGAGGGGCCCTGGCGCGGTGGTGCTACGGTGCGGCGACCCCCCCGGTCGGGGGCGTCGTTG
CCAACGGCGGTTAGCCGGCTAACGAACAATACGGTTACCGTTGGG
Found at i:68368 original size:12 final size:12
Alignment explanation
Indices: 68351--68380 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
68341 GCGGCGCCAG
68351 CATCGGGGCCGC
1 CATCGGGGCCGC
*
68363 CATCGGGGGCGC
1 CATCGGGGCCGC
68375 CATCGG
1 CATCGG
68381 CTGCCCCACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.37, G:0.43, T:0.10
Consensus pattern (12 bp):
CATCGGGGCCGC
Left flanking sequence: Indices 67851 -- 68350
GGCCCAGAACCGTTTCCAGACCCAACCCCGTTCCCACTGGTTACACCCCCGCTCCCTGCCCCGCC
CCCACTCGCCCCCAGAATCAGGTTCCGCGCGCTCTCGCCGCTCTCCTCGTCCTCCAGGTCCGAGC
GCTTCTGCAGCGCCCGCCGTCTGCGGTTGGCACCGCCGTTCCACCAGTTCTTGATGGCGTTGTCG
GAGCGCCCGTTCAAGTGCCGCAGGATCTCCGCCCACTTCTTGCCGTACTTGGCCACCAACACCTC
GATCAACTCGCCCTCCTCGGCGGTGATGGGGCTGCGGTTGAGCAGCGGCTTCAAGTTCTGGTGGT
AGCGCTCGCGGCACTGCTTGGGCGTCCGCGTCAGCAACAGGTTCAGGATGCGGACCCAGTTGGTG
GCGCCAAACACCGCGATCAAGTCCAAGAGCTTCTTGTCCTCGAGGGGCAGCCAGGGCCCGCGCCG
GGTCAGCGCCAGGGGCAGCGGCTGCGCCGGGGGCGGCGGCGCCAG
Right flanking sequence: Indices 68381 -- 68880
CTGCCCCACCCCGGGGGGCGGCTGCCCCCTGGCGAACGGGTGCCCGGCCATGGGGGTGGGCAACG
GTTGCGGCGGCGGCTGCGGGTGGTGCGGCGGCGGCAACGGGTGCTGGGACGACTGCGGGTAGTAG
TACATGTGGCCGTTGGGGTAGTTCATCGCCAACTGTGCTCTGAGGTCCTCACCGGGTTTGCGAGG
GGCACCGTGCGCTTTTTTGGGGCAAGGAAAAAAGTTGGTGGTTTTGTTATGGGGGCGGCAGGTGA
CCAGAAAAAATAACTTGGCAGGAAATGTGGGAGGGTGGGGGAGGGCCCCGAGCGAGGGTGGGGCC
GGGCGCGCGGAGGGTGCGGGCCCGCGCGGGAGGAGGAGGGGCCCTGGCGCGGTGGTGCTACGGTG
CGGCGACCCCCCCGGTCGGGGGCGTCGTTGCCAACGGCGGTTAGCCGGCTAACGAACAATACGGT
TACCGTTGGGGTCACCTGAAACAGAGACCGGCCCCGACGCGCGTG
Found at i:68486 original size:21 final size:21
Alignment explanation
Indices: 68448--68488 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68438 GGGCAACGGT
**
68448 TGCGGCGGCGGCTGCGGGTGG
1 TGCGGCGGCGGCAACGGGTGG
68469 TGCGGCGGCGGCAACGGGTG
1 TGCGGCGGCGGCAACGGGTG
68489 CTGGGACGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.24, G:0.59, T:0.12
Consensus pattern (21 bp):
TGCGGCGGCGGCAACGGGTGG
Left flanking sequence: Indices 67948 -- 68447
TCTCGCCGCTCTCCTCGTCCTCCAGGTCCGAGCGCTTCTGCAGCGCCCGCCGTCTGCGGTTGGCA
CCGCCGTTCCACCAGTTCTTGATGGCGTTGTCGGAGCGCCCGTTCAAGTGCCGCAGGATCTCCGC
CCACTTCTTGCCGTACTTGGCCACCAACACCTCGATCAACTCGCCCTCCTCGGCGGTGATGGGGC
TGCGGTTGAGCAGCGGCTTCAAGTTCTGGTGGTAGCGCTCGCGGCACTGCTTGGGCGTCCGCGTC
AGCAACAGGTTCAGGATGCGGACCCAGTTGGTGGCGCCAAACACCGCGATCAAGTCCAAGAGCTT
CTTGTCCTCGAGGGGCAGCCAGGGCCCGCGCCGGGTCAGCGCCAGGGGCAGCGGCTGCGCCGGGG
GCGGCGGCGCCAGCATCGGGGCCGCCATCGGGGGCGCCATCGGCTGCCCCACCCCGGGGGGCGGC
TGCCCCCTGGCGAACGGGTGCCCGGCCATGGGGGTGGGCAACGGT
Right flanking sequence: Indices 68489 -- 68988
CTGGGACGACTGCGGGTAGTAGTACATGTGGCCGTTGGGGTAGTTCATCGCCAACTGTGCTCTGA
GGTCCTCACCGGGTTTGCGAGGGGCACCGTGCGCTTTTTTGGGGCAAGGAAAAAAGTTGGTGGTT
TTGTTATGGGGGCGGCAGGTGACCAGAAAAAATAACTTGGCAGGAAATGTGGGAGGGTGGGGGAG
GGCCCCGAGCGAGGGTGGGGCCGGGCGCGCGGAGGGTGCGGGCCCGCGCGGGAGGAGGAGGGGCC
CTGGCGCGGTGGTGCTACGGTGCGGCGACCCCCCCGGTCGGGGGCGTCGTTGCCAACGGCGGTTA
GCCGGCTAACGAACAATACGGTTACCGTTGGGGTCACCTGAAACAGAGACCGGCCCCGACGCGCG
TGGGGCGCCCGGGCGAGCGAGCCAGGGGGCCTCTGCCGTTCGCACGCACCCGCGGTGTGCAGTGC
GGTCGCTTACCGTTTCTACCCGTGCGGGTCGGGGCCCGCCCGTTG
Found at i:68732 original size:21 final size:20
Alignment explanation
Indices: 68694--68738 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
68684 GGCCCCGAGC
*
68694 GAGGGTGGGGCCGGGCGCGCG
1 GAGGGTGGGGCCGCGCGCG-G
68715 GAGGGTGCGGGCC-CGCGCGG
1 GAGGGTG-GGGCCGCGCGCGG
68735 GAGG
1 GAGG
68739 AGGAGGGGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 12 0.55
22 5 0.23
ACGTcount: A:0.07, C:0.24, G:0.64, T:0.04
Consensus pattern (20 bp):
GAGGGTGGGGCCGCGCGCGG
Left flanking sequence: Indices 68194 -- 68693
TGGGCGTCCGCGTCAGCAACAGGTTCAGGATGCGGACCCAGTTGGTGGCGCCAAACACCGCGATC
AAGTCCAAGAGCTTCTTGTCCTCGAGGGGCAGCCAGGGCCCGCGCCGGGTCAGCGCCAGGGGCAG
CGGCTGCGCCGGGGGCGGCGGCGCCAGCATCGGGGCCGCCATCGGGGGCGCCATCGGCTGCCCCA
CCCCGGGGGGCGGCTGCCCCCTGGCGAACGGGTGCCCGGCCATGGGGGTGGGCAACGGTTGCGGC
GGCGGCTGCGGGTGGTGCGGCGGCGGCAACGGGTGCTGGGACGACTGCGGGTAGTAGTACATGTG
GCCGTTGGGGTAGTTCATCGCCAACTGTGCTCTGAGGTCCTCACCGGGTTTGCGAGGGGCACCGT
GCGCTTTTTTGGGGCAAGGAAAAAAGTTGGTGGTTTTGTTATGGGGGCGGCAGGTGACCAGAAAA
AATAACTTGGCAGGAAATGTGGGAGGGTGGGGGAGGGCCCCGAGC
Right flanking sequence: Indices 68739 -- 69238
AGGAGGGGCCCTGGCGCGGTGGTGCTACGGTGCGGCGACCCCCCCGGTCGGGGGCGTCGTTGCCA
ACGGCGGTTAGCCGGCTAACGAACAATACGGTTACCGTTGGGGTCACCTGAAACAGAGACCGGCC
CCGACGCGCGTGGGGCGCCCGGGCGAGCGAGCCAGGGGGCCTCTGCCGTTCGCACGCACCCGCGG
TGTGCAGTGCGGTCGCTTACCGTTTCTACCCGTGCGGGTCGGGGCCCGCCCGTTGGTCGCCTTGC
GGGGCATGATTTACCCCGGAGATCCTGCGATTAGATATTTTTTTGTCGTTTGTTGAGTATTTTTT
AGCCCTGGGATGTGCCTGCACCTCCCATCCACGGCAATCGCACCGGGAATGGGCGAGTGGGAGCA
ACGGCCGGTGGGCGCACGGGCGGAGACGGGTTGGGTGGAGGTGGAGGGTGCGAGTGAGGGTGCGA
GTGGGTGGAGGGGAGGTAGGGTGGAGGGGAGGTAGGGGTGTGGAG
Found at i:69189 original size:12 final size:12
Alignment explanation
Indices: 69172--69196 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69162 GGTGGAGGTG
69172 GAGGGTGCGAGT
1 GAGGGTGCGAGT
69184 GAGGGTGCGAGT
1 GAGGGTGCGAGT
69196 G
1 G
69197 GGTGGAGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.60, T:0.16
Consensus pattern (12 bp):
GAGGGTGCGAGT
Left flanking sequence: Indices 68672 -- 69171
AGGGTGGGGGAGGGCCCCGAGCGAGGGTGGGGCCGGGCGCGCGGAGGGTGCGGGCCCGCGCGGGA
GGAGGAGGGGCCCTGGCGCGGTGGTGCTACGGTGCGGCGACCCCCCCGGTCGGGGGCGTCGTTGC
CAACGGCGGTTAGCCGGCTAACGAACAATACGGTTACCGTTGGGGTCACCTGAAACAGAGACCGG
CCCCGACGCGCGTGGGGCGCCCGGGCGAGCGAGCCAGGGGGCCTCTGCCGTTCGCACGCACCCGC
GGTGTGCAGTGCGGTCGCTTACCGTTTCTACCCGTGCGGGTCGGGGCCCGCCCGTTGGTCGCCTT
GCGGGGCATGATTTACCCCGGAGATCCTGCGATTAGATATTTTTTTGTCGTTTGTTGAGTATTTT
TTAGCCCTGGGATGTGCCTGCACCTCCCATCCACGGCAATCGCACCGGGAATGGGCGAGTGGGAG
CAACGGCCGGTGGGCGCACGGGCGGAGACGGGTTGGGTGGAGGTG
Right flanking sequence: Indices 69197 -- 69696
GGTGGAGGGGAGGTAGGGTGGAGGGGAGGTAGGGGTGTGGAGGTTTGTGGACACAACGGTTATTT
TTAGGACGGTCCAGTGGTGGGGGTGTGATGCGACGAGGTTATTTTCTGGGGTCTAGGTGGTGTAG
GTGGTCTAGGTGGGTCTAGATGGTGTGGGTGTGGTGTGGTATTATTATGACCGTGTTATTATGGT
GGATGGGTATTATGGGGTTATGTTGGTGTATTGGGGTCTAGGTGGTGTATTAGTGTTATGGTCTT
GGTTTGGTGGTGTATTGGTTATTCCGTTGGTTTACCGTTGATTTCCGTTGGTTTATCGTTGGTTT
ACTGTTGGTTTACCGTTGGTTTGCCGTTGGTTTCTTGGTGTATGGTTATAACCGTTGGTTATTTA
ACGTATGGTTATTACCGTTGGTTATTTAACGTATGGTTATTACCGTTGGTTATTTAGCGTGTGCT
TATTATCACTGGTTCGTATGGTGCATTAGGTGTTGCGTTTTTCTC
Found at i:69217 original size:16 final size:16
Alignment explanation
Indices: 69196--69230 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
69186 GGGTGCGAGT
69196 GGGTGGAGGGGAGGTA
1 GGGTGGAGGGGAGGTA
69212 GGGTGGAGGGGAGGTA
1 GGGTGGAGGGGAGGTA
69228 GGG
1 GGG
69231 GTGTGGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.71, T:0.11
Consensus pattern (16 bp):
GGGTGGAGGGGAGGTA
Left flanking sequence: Indices 68696 -- 69195
GGGTGGGGCCGGGCGCGCGGAGGGTGCGGGCCCGCGCGGGAGGAGGAGGGGCCCTGGCGCGGTGG
TGCTACGGTGCGGCGACCCCCCCGGTCGGGGGCGTCGTTGCCAACGGCGGTTAGCCGGCTAACGA
ACAATACGGTTACCGTTGGGGTCACCTGAAACAGAGACCGGCCCCGACGCGCGTGGGGCGCCCGG
GCGAGCGAGCCAGGGGGCCTCTGCCGTTCGCACGCACCCGCGGTGTGCAGTGCGGTCGCTTACCG
TTTCTACCCGTGCGGGTCGGGGCCCGCCCGTTGGTCGCCTTGCGGGGCATGATTTACCCCGGAGA
TCCTGCGATTAGATATTTTTTTGTCGTTTGTTGAGTATTTTTTAGCCCTGGGATGTGCCTGCACC
TCCCATCCACGGCAATCGCACCGGGAATGGGCGAGTGGGAGCAACGGCCGGTGGGCGCACGGGCG
GAGACGGGTTGGGTGGAGGTGGAGGGTGCGAGTGAGGGTGCGAGT
Right flanking sequence: Indices 69231 -- 69730
GTGTGGAGGTTTGTGGACACAACGGTTATTTTTAGGACGGTCCAGTGGTGGGGGTGTGATGCGAC
GAGGTTATTTTCTGGGGTCTAGGTGGTGTAGGTGGTCTAGGTGGGTCTAGATGGTGTGGGTGTGG
TGTGGTATTATTATGACCGTGTTATTATGGTGGATGGGTATTATGGGGTTATGTTGGTGTATTGG
GGTCTAGGTGGTGTATTAGTGTTATGGTCTTGGTTTGGTGGTGTATTGGTTATTCCGTTGGTTTA
CCGTTGATTTCCGTTGGTTTATCGTTGGTTTACTGTTGGTTTACCGTTGGTTTGCCGTTGGTTTC
TTGGTGTATGGTTATAACCGTTGGTTATTTAACGTATGGTTATTACCGTTGGTTATTTAACGTAT
GGTTATTACCGTTGGTTATTTAGCGTGTGCTTATTATCACTGGTTCGTATGGTGCATTAGGTGTT
GCGTTTTTCTCATGCTGGCGAGTTACTTGCATTGGTGGTCATTTT
Found at i:69329 original size:9 final size:9
Alignment explanation
Indices: 69311--69350 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
69301 TATTTTCTGG
69311 GGTCTAGGT
1 GGTCTAGGT
*
69320 GGTGTAGGT
1 GGTCTAGGT
69329 GGTCTAGGT
1 GGTCTAGGT
*
69338 GGGTCTAGAT
1 -GGTCTAGGT
69348 GGT
1 GGT
69351 GTGGGTGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.12, C:0.07, G:0.47, T:0.33
Consensus pattern (9 bp):
GGTCTAGGT
Left flanking sequence: Indices 68811 -- 69310
TTAGCCGGCTAACGAACAATACGGTTACCGTTGGGGTCACCTGAAACAGAGACCGGCCCCGACGC
GCGTGGGGCGCCCGGGCGAGCGAGCCAGGGGGCCTCTGCCGTTCGCACGCACCCGCGGTGTGCAG
TGCGGTCGCTTACCGTTTCTACCCGTGCGGGTCGGGGCCCGCCCGTTGGTCGCCTTGCGGGGCAT
GATTTACCCCGGAGATCCTGCGATTAGATATTTTTTTGTCGTTTGTTGAGTATTTTTTAGCCCTG
GGATGTGCCTGCACCTCCCATCCACGGCAATCGCACCGGGAATGGGCGAGTGGGAGCAACGGCCG
GTGGGCGCACGGGCGGAGACGGGTTGGGTGGAGGTGGAGGGTGCGAGTGAGGGTGCGAGTGGGTG
GAGGGGAGGTAGGGTGGAGGGGAGGTAGGGGTGTGGAGGTTTGTGGACACAACGGTTATTTTTAG
GACGGTCCAGTGGTGGGGGTGTGATGCGACGAGGTTATTTTCTGG
Right flanking sequence: Indices 69351 -- 69850
GTGGGTGTGGTGTGGTATTATTATGACCGTGTTATTATGGTGGATGGGTATTATGGGGTTATGTT
GGTGTATTGGGGTCTAGGTGGTGTATTAGTGTTATGGTCTTGGTTTGGTGGTGTATTGGTTATTC
CGTTGGTTTACCGTTGATTTCCGTTGGTTTATCGTTGGTTTACTGTTGGTTTACCGTTGGTTTGC
CGTTGGTTTCTTGGTGTATGGTTATAACCGTTGGTTATTTAACGTATGGTTATTACCGTTGGTTA
TTTAACGTATGGTTATTACCGTTGGTTATTTAGCGTGTGCTTATTATCACTGGTTCGTATGGTGC
ATTAGGTGTTGCGTTTTTCTCATGCTGGCGAGTTACTTGCATTGGTGGTCATTTTTGTATGTCCT
TTGCCATCTTCACCTGGTCATTTCTCACTCTACCGGTTGCTCTGACACTACCCGCACTACTCTAA
CTCTACCCCATTACTCTACCCTACCATTGCTCTCTCCACCTCATG
Found at i:69494 original size:11 final size:11
Alignment explanation
Indices: 69480--69554 Score: 107
Period size: 11 Copynumber: 6.9 Consensus size: 11
69470 ATTGGTTATT
69480 CCGTTGGTTTA
1 CCGTTGGTTTA
*
69491 CCGTTGATTT-
1 CCGTTGGTTTA
69501 CCGTTGGTTTA
1 CCGTTGGTTTA
*
69512 TCGTTGGTTTA
1 CCGTTGGTTTA
*
69523 CTGTTGGTTTA
1 CCGTTGGTTTA
*
69534 CCGTTGGTTTG
1 CCGTTGGTTTA
69545 CCGTTGGTTT
1 CCGTTGGTTT
69555 CTTGGTGTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
10 9 0.16
11 47 0.84
ACGTcount: A:0.07, C:0.16, G:0.28, T:0.49
Consensus pattern (11 bp):
CCGTTGGTTTA
Left flanking sequence: Indices 68980 -- 69479
CGCCCGTTGGTCGCCTTGCGGGGCATGATTTACCCCGGAGATCCTGCGATTAGATATTTTTTTGT
CGTTTGTTGAGTATTTTTTAGCCCTGGGATGTGCCTGCACCTCCCATCCACGGCAATCGCACCGG
GAATGGGCGAGTGGGAGCAACGGCCGGTGGGCGCACGGGCGGAGACGGGTTGGGTGGAGGTGGAG
GGTGCGAGTGAGGGTGCGAGTGGGTGGAGGGGAGGTAGGGTGGAGGGGAGGTAGGGGTGTGGAGG
TTTGTGGACACAACGGTTATTTTTAGGACGGTCCAGTGGTGGGGGTGTGATGCGACGAGGTTATT
TTCTGGGGTCTAGGTGGTGTAGGTGGTCTAGGTGGGTCTAGATGGTGTGGGTGTGGTGTGGTATT
ATTATGACCGTGTTATTATGGTGGATGGGTATTATGGGGTTATGTTGGTGTATTGGGGTCTAGGT
GGTGTATTAGTGTTATGGTCTTGGTTTGGTGGTGTATTGGTTATT
Right flanking sequence: Indices 69555 -- 70054
CTTGGTGTATGGTTATAACCGTTGGTTATTTAACGTATGGTTATTACCGTTGGTTATTTAACGTA
TGGTTATTACCGTTGGTTATTTAGCGTGTGCTTATTATCACTGGTTCGTATGGTGCATTAGGTGT
TGCGTTTTTCTCATGCTGGCGAGTTACTTGCATTGGTGGTCATTTTTGTATGTCCTTTGCCATCT
TCACCTGGTCATTTCTCACTCTACCGGTTGCTCTGACACTACCCGCACTACTCTAACTCTACCCC
ATTACTCTACCCTACCATTGCTCTCTCCACCTCATGCTCTCTCCACCTCATGCTCTATCCACCCC
ATTGCTCTCAACTACCCCATTGCTTTTCCCTTTTCTCTTCTCTTCTCTCTCTTTTCTCTCTCATT
GCTCTTCTCTCTTTCTCTTTTCTCTTTTCTCTTTCCTTTCTCTAGTCTACCTTATTTTATAGTCG
CATCCCAAAACGGTAGGGTCACTGGTCACTAGCCGGACCGCCCGT
Found at i:69538 original size:33 final size:32
Alignment explanation
Indices: 69471--69554 Score: 105
Period size: 33 Copynumber: 2.6 Consensus size: 32
69461 TGGTGGTGTA
*
69471 TTGGTTATTCCGTTGGTTTACCGTTGATTTCCG
1 TTGGTT-TACCGTTGGTTTACCGTTGATTTCCG
* * *
69504 TTGGTTTATCGTTGGTTTACTGTTGGTTTACCG
1 TTGGTTTACCGTTGGTTTACCGTTGATTT-CCG
*
69537 TTGGTTTGCCGTTGGTTT
1 TTGGTTTACCGTTGGTTT
69555 CTTGGTGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
32 19 0.43
33 25 0.57
ACGTcount: A:0.07, C:0.14, G:0.27, T:0.51
Consensus pattern (32 bp):
TTGGTTTACCGTTGGTTTACCGTTGATTTCCG
Left flanking sequence: Indices 68971 -- 69470
GTCGGGGCCCGCCCGTTGGTCGCCTTGCGGGGCATGATTTACCCCGGAGATCCTGCGATTAGATA
TTTTTTTGTCGTTTGTTGAGTATTTTTTAGCCCTGGGATGTGCCTGCACCTCCCATCCACGGCAA
TCGCACCGGGAATGGGCGAGTGGGAGCAACGGCCGGTGGGCGCACGGGCGGAGACGGGTTGGGTG
GAGGTGGAGGGTGCGAGTGAGGGTGCGAGTGGGTGGAGGGGAGGTAGGGTGGAGGGGAGGTAGGG
GTGTGGAGGTTTGTGGACACAACGGTTATTTTTAGGACGGTCCAGTGGTGGGGGTGTGATGCGAC
GAGGTTATTTTCTGGGGTCTAGGTGGTGTAGGTGGTCTAGGTGGGTCTAGATGGTGTGGGTGTGG
TGTGGTATTATTATGACCGTGTTATTATGGTGGATGGGTATTATGGGGTTATGTTGGTGTATTGG
GGTCTAGGTGGTGTATTAGTGTTATGGTCTTGGTTTGGTGGTGTA
Right flanking sequence: Indices 69555 -- 70054
CTTGGTGTATGGTTATAACCGTTGGTTATTTAACGTATGGTTATTACCGTTGGTTATTTAACGTA
TGGTTATTACCGTTGGTTATTTAGCGTGTGCTTATTATCACTGGTTCGTATGGTGCATTAGGTGT
TGCGTTTTTCTCATGCTGGCGAGTTACTTGCATTGGTGGTCATTTTTGTATGTCCTTTGCCATCT
TCACCTGGTCATTTCTCACTCTACCGGTTGCTCTGACACTACCCGCACTACTCTAACTCTACCCC
ATTACTCTACCCTACCATTGCTCTCTCCACCTCATGCTCTCTCCACCTCATGCTCTATCCACCCC
ATTGCTCTCAACTACCCCATTGCTTTTCCCTTTTCTCTTCTCTTCTCTCTCTTTTCTCTCTCATT
GCTCTTCTCTCTTTCTCTTTTCTCTTTTCTCTTTCCTTTCTCTAGTCTACCTTATTTTATAGTCG
CATCCCAAAACGGTAGGGTCACTGGTCACTAGCCGGACCGCCCGT
Found at i:69582 original size:13 final size:13
Alignment explanation
Indices: 69564--69639 Score: 66
Period size: 13 Copynumber: 5.5 Consensus size: 13
69554 TCTTGGTGTA
69564 TGGTTATAACCGT
1 TGGTTATAACCGT
69577 TGGTTATTTAA-CGT
1 TGGTTA--TAACCGT
*
69591 ATGGTTATTACCGT
1 -TGGTTATAACCGT
69605 TGGTTATTTAA-CGT
1 TGGTTA--TAACCGT
*
69619 ATGGTTATTACCGT
1 -TGGTTATAACCGT
69633 TGGTTAT
1 TGGTTAT
69640 TTAGCGTGTG
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
13 23 0.44
14 12 0.23
15 17 0.33
ACGTcount: A:0.21, C:0.11, G:0.22, T:0.46
Consensus pattern (13 bp):
TGGTTATAACCGT
Left flanking sequence: Indices 69064 -- 69563
AGCCCTGGGATGTGCCTGCACCTCCCATCCACGGCAATCGCACCGGGAATGGGCGAGTGGGAGCA
ACGGCCGGTGGGCGCACGGGCGGAGACGGGTTGGGTGGAGGTGGAGGGTGCGAGTGAGGGTGCGA
GTGGGTGGAGGGGAGGTAGGGTGGAGGGGAGGTAGGGGTGTGGAGGTTTGTGGACACAACGGTTA
TTTTTAGGACGGTCCAGTGGTGGGGGTGTGATGCGACGAGGTTATTTTCTGGGGTCTAGGTGGTG
TAGGTGGTCTAGGTGGGTCTAGATGGTGTGGGTGTGGTGTGGTATTATTATGACCGTGTTATTAT
GGTGGATGGGTATTATGGGGTTATGTTGGTGTATTGGGGTCTAGGTGGTGTATTAGTGTTATGGT
CTTGGTTTGGTGGTGTATTGGTTATTCCGTTGGTTTACCGTTGATTTCCGTTGGTTTATCGTTGG
TTTACTGTTGGTTTACCGTTGGTTTGCCGTTGGTTTCTTGGTGTA
Right flanking sequence: Indices 69640 -- 70139
TTAGCGTGTGCTTATTATCACTGGTTCGTATGGTGCATTAGGTGTTGCGTTTTTCTCATGCTGGC
GAGTTACTTGCATTGGTGGTCATTTTTGTATGTCCTTTGCCATCTTCACCTGGTCATTTCTCACT
CTACCGGTTGCTCTGACACTACCCGCACTACTCTAACTCTACCCCATTACTCTACCCTACCATTG
CTCTCTCCACCTCATGCTCTCTCCACCTCATGCTCTATCCACCCCATTGCTCTCAACTACCCCAT
TGCTTTTCCCTTTTCTCTTCTCTTCTCTCTCTTTTCTCTCTCATTGCTCTTCTCTCTTTCTCTTT
TCTCTTTTCTCTTTCCTTTCTCTAGTCTACCTTATTTTATAGTCGCATCCCAAAACGGTAGGGTC
ACTGGTCACTAGCCGGACCGCCCGTGGCCAGCCCTGCGTGCACCCAGCTTGTGCCATGGCACCGG
CTTGTGCAGCCTGTGCCCAGGCTAAATATGGGGCCATGGTTCTGT
Found at i:69640 original size:13 final size:13
Alignment explanation
Indices: 69564--69640 Score: 91
Period size: 14 Copynumber: 5.6 Consensus size: 13
69554 TCTTGGTGTA
*
69564 TGGTTATAACCGT
1 TGGTTATTACCGT
*
69577 TGGTTATTTAACGT
1 TGGTTA-TTACCGT
69591 ATGGTTATTACCGT
1 -TGGTTATTACCGT
*
69605 TGGTTATTTAACGT
1 TGGTTA-TTACCGT
69619 ATGGTTATTACCGT
1 -TGGTTATTACCGT
69633 TGGTTATT
1 TGGTTATT
69641 TAGCGTGTGC
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
13 20 0.36
14 23 0.42
15 12 0.22
ACGTcount: A:0.21, C:0.10, G:0.22, T:0.47
Consensus pattern (13 bp):
TGGTTATTACCGT
Left flanking sequence: Indices 69064 -- 69563
AGCCCTGGGATGTGCCTGCACCTCCCATCCACGGCAATCGCACCGGGAATGGGCGAGTGGGAGCA
ACGGCCGGTGGGCGCACGGGCGGAGACGGGTTGGGTGGAGGTGGAGGGTGCGAGTGAGGGTGCGA
GTGGGTGGAGGGGAGGTAGGGTGGAGGGGAGGTAGGGGTGTGGAGGTTTGTGGACACAACGGTTA
TTTTTAGGACGGTCCAGTGGTGGGGGTGTGATGCGACGAGGTTATTTTCTGGGGTCTAGGTGGTG
TAGGTGGTCTAGGTGGGTCTAGATGGTGTGGGTGTGGTGTGGTATTATTATGACCGTGTTATTAT
GGTGGATGGGTATTATGGGGTTATGTTGGTGTATTGGGGTCTAGGTGGTGTATTAGTGTTATGGT
CTTGGTTTGGTGGTGTATTGGTTATTCCGTTGGTTTACCGTTGATTTCCGTTGGTTTATCGTTGG
TTTACTGTTGGTTTACCGTTGGTTTGCCGTTGGTTTCTTGGTGTA
Right flanking sequence: Indices 69641 -- 70140
TAGCGTGTGCTTATTATCACTGGTTCGTATGGTGCATTAGGTGTTGCGTTTTTCTCATGCTGGCG
AGTTACTTGCATTGGTGGTCATTTTTGTATGTCCTTTGCCATCTTCACCTGGTCATTTCTCACTC
TACCGGTTGCTCTGACACTACCCGCACTACTCTAACTCTACCCCATTACTCTACCCTACCATTGC
TCTCTCCACCTCATGCTCTCTCCACCTCATGCTCTATCCACCCCATTGCTCTCAACTACCCCATT
GCTTTTCCCTTTTCTCTTCTCTTCTCTCTCTTTTCTCTCTCATTGCTCTTCTCTCTTTCTCTTTT
CTCTTTTCTCTTTCCTTTCTCTAGTCTACCTTATTTTATAGTCGCATCCCAAAACGGTAGGGTCA
CTGGTCACTAGCCGGACCGCCCGTGGCCAGCCCTGCGTGCACCCAGCTTGTGCCATGGCACCGGC
TTGTGCAGCCTGTGCCCAGGCTAAATATGGGGCCATGGTTCTGTG
Found at i:69665 original size:28 final size:28
Alignment explanation
Indices: 69561--69656 Score: 156
Period size: 28 Copynumber: 3.4 Consensus size: 28
69551 GTTTCTTGGT
*
69561 GTATGGTTATAACCGTTGGTTATTTAAC
1 GTATGGTTATTACCGTTGGTTATTTAAC
69589 GTATGGTTATTACCGTTGGTTATTTAAC
1 GTATGGTTATTACCGTTGGTTATTTAAC
*
69617 GTATGGTTATTACCGTTGGTTATTTAGC
1 GTATGGTTATTACCGTTGGTTATTTAAC
* *
69645 GTGTGCTTATTA
1 GTATGGTTATTA
69657 TCACTGGTTC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.21, C:0.10, G:0.23, T:0.46
Consensus pattern (28 bp):
GTATGGTTATTACCGTTGGTTATTTAAC
Left flanking sequence: Indices 69061 -- 69560
TTTAGCCCTGGGATGTGCCTGCACCTCCCATCCACGGCAATCGCACCGGGAATGGGCGAGTGGGA
GCAACGGCCGGTGGGCGCACGGGCGGAGACGGGTTGGGTGGAGGTGGAGGGTGCGAGTGAGGGTG
CGAGTGGGTGGAGGGGAGGTAGGGTGGAGGGGAGGTAGGGGTGTGGAGGTTTGTGGACACAACGG
TTATTTTTAGGACGGTCCAGTGGTGGGGGTGTGATGCGACGAGGTTATTTTCTGGGGTCTAGGTG
GTGTAGGTGGTCTAGGTGGGTCTAGATGGTGTGGGTGTGGTGTGGTATTATTATGACCGTGTTAT
TATGGTGGATGGGTATTATGGGGTTATGTTGGTGTATTGGGGTCTAGGTGGTGTATTAGTGTTAT
GGTCTTGGTTTGGTGGTGTATTGGTTATTCCGTTGGTTTACCGTTGATTTCCGTTGGTTTATCGT
TGGTTTACTGTTGGTTTACCGTTGGTTTGCCGTTGGTTTCTTGGT
Right flanking sequence: Indices 69657 -- 70156
TCACTGGTTCGTATGGTGCATTAGGTGTTGCGTTTTTCTCATGCTGGCGAGTTACTTGCATTGGT
GGTCATTTTTGTATGTCCTTTGCCATCTTCACCTGGTCATTTCTCACTCTACCGGTTGCTCTGAC
ACTACCCGCACTACTCTAACTCTACCCCATTACTCTACCCTACCATTGCTCTCTCCACCTCATGC
TCTCTCCACCTCATGCTCTATCCACCCCATTGCTCTCAACTACCCCATTGCTTTTCCCTTTTCTC
TTCTCTTCTCTCTCTTTTCTCTCTCATTGCTCTTCTCTCTTTCTCTTTTCTCTTTTCTCTTTCCT
TTCTCTAGTCTACCTTATTTTATAGTCGCATCCCAAAACGGTAGGGTCACTGGTCACTAGCCGGA
CCGCCCGTGGCCAGCCCTGCGTGCACCCAGCTTGTGCCATGGCACCGGCTTGTGCAGCCTGTGCC
CAGGCTAAATATGGGGCCATGGTTCTGTGTCGTCTCCGGCGGTTC
Found at i:69803 original size:20 final size:19
Alignment explanation
Indices: 69780--69823 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
69770 CTACCGGTTG
*
69780 CTCTGACACTACCCGCACTA
1 CTCTAACACTACCC-CACTA
* *
69800 CTCTAACTCTACCCCATTA
1 CTCTAACACTACCCCACTA
69819 CTCTA
1 CTCTA
69824 CCCTACCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.25, C:0.43, G:0.05, T:0.27
Consensus pattern (19 bp):
CTCTAACACTACCCCACTA
Left flanking sequence: Indices 69280 -- 69779
GGGGGTGTGATGCGACGAGGTTATTTTCTGGGGTCTAGGTGGTGTAGGTGGTCTAGGTGGGTCTA
GATGGTGTGGGTGTGGTGTGGTATTATTATGACCGTGTTATTATGGTGGATGGGTATTATGGGGT
TATGTTGGTGTATTGGGGTCTAGGTGGTGTATTAGTGTTATGGTCTTGGTTTGGTGGTGTATTGG
TTATTCCGTTGGTTTACCGTTGATTTCCGTTGGTTTATCGTTGGTTTACTGTTGGTTTACCGTTG
GTTTGCCGTTGGTTTCTTGGTGTATGGTTATAACCGTTGGTTATTTAACGTATGGTTATTACCGT
TGGTTATTTAACGTATGGTTATTACCGTTGGTTATTTAGCGTGTGCTTATTATCACTGGTTCGTA
TGGTGCATTAGGTGTTGCGTTTTTCTCATGCTGGCGAGTTACTTGCATTGGTGGTCATTTTTGTA
TGTCCTTTGCCATCTTCACCTGGTCATTTCTCACTCTACCGGTTG
Right flanking sequence: Indices 69824 -- 70323
CCCTACCATTGCTCTCTCCACCTCATGCTCTCTCCACCTCATGCTCTATCCACCCCATTGCTCTC
AACTACCCCATTGCTTTTCCCTTTTCTCTTCTCTTCTCTCTCTTTTCTCTCTCATTGCTCTTCTC
TCTTTCTCTTTTCTCTTTTCTCTTTCCTTTCTCTAGTCTACCTTATTTTATAGTCGCATCCCAAA
ACGGTAGGGTCACTGGTCACTAGCCGGACCGCCCGTGGCCAGCCCTGCGTGCACCCAGCTTGTGC
CATGGCACCGGCTTGTGCAGCCTGTGCCCAGGCTAAATATGGGGCCATGGTTCTGTGTCGTCTCC
GGCGGTTCCGAGGGCCCACCACCGGGCCCTCGCACCACCGTCGGCCGACACCGTGCATGCCCTGT
ACGTCTAATGCACGTCGACGGGTCCGCCCGCCCTCGGTGGCGGTTGGTTCGACACCTGGGGGTGA
TCAGCAACCTCCACGCGGGGGAGACGCCACAAAAACGTAGCGATC
Found at i:69852 original size:16 final size:16
Alignment explanation
Indices: 69833--69888 Score: 85
Period size: 16 Copynumber: 3.4 Consensus size: 16
69823 ACCCTACCAT
69833 TGCTCTCTCCACCTCA
1 TGCTCTCTCCACCTCA
69849 TGCTCTCTCCACCTCA
1 TGCTCTCTCCACCTCA
* *
69865 TGCTCTATCCACCCCA
1 TGCTCTCTCCACCTCA
69881 TTGCTCTC
1 -TGCTCTC
69889 AACTACCCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
16 30 0.83
17 6 0.17
ACGTcount: A:0.12, C:0.48, G:0.07, T:0.32
Consensus pattern (16 bp):
TGCTCTCTCCACCTCA
Left flanking sequence: Indices 69333 -- 69832
TAGGTGGGTCTAGATGGTGTGGGTGTGGTGTGGTATTATTATGACCGTGTTATTATGGTGGATGG
GTATTATGGGGTTATGTTGGTGTATTGGGGTCTAGGTGGTGTATTAGTGTTATGGTCTTGGTTTG
GTGGTGTATTGGTTATTCCGTTGGTTTACCGTTGATTTCCGTTGGTTTATCGTTGGTTTACTGTT
GGTTTACCGTTGGTTTGCCGTTGGTTTCTTGGTGTATGGTTATAACCGTTGGTTATTTAACGTAT
GGTTATTACCGTTGGTTATTTAACGTATGGTTATTACCGTTGGTTATTTAGCGTGTGCTTATTAT
CACTGGTTCGTATGGTGCATTAGGTGTTGCGTTTTTCTCATGCTGGCGAGTTACTTGCATTGGTG
GTCATTTTTGTATGTCCTTTGCCATCTTCACCTGGTCATTTCTCACTCTACCGGTTGCTCTGACA
CTACCCGCACTACTCTAACTCTACCCCATTACTCTACCCTACCAT
Right flanking sequence: Indices 69889 -- 70388
AACTACCCCATTGCTTTTCCCTTTTCTCTTCTCTTCTCTCTCTTTTCTCTCTCATTGCTCTTCTC
TCTTTCTCTTTTCTCTTTTCTCTTTCCTTTCTCTAGTCTACCTTATTTTATAGTCGCATCCCAAA
ACGGTAGGGTCACTGGTCACTAGCCGGACCGCCCGTGGCCAGCCCTGCGTGCACCCAGCTTGTGC
CATGGCACCGGCTTGTGCAGCCTGTGCCCAGGCTAAATATGGGGCCATGGTTCTGTGTCGTCTCC
GGCGGTTCCGAGGGCCCACCACCGGGCCCTCGCACCACCGTCGGCCGACACCGTGCATGCCCTGT
ACGTCTAATGCACGTCGACGGGTCCGCCCGCCCTCGGTGGCGGTTGGTTCGACACCTGGGGGTGA
TCAGCAACCTCCACGCGGGGGAGACGCCACAAAAACGTAGCGATCGGCGGACGCGAAGCGAGAGG
GGCAGTGGTGATGTGGTGATGGTGGTGATGGCGTCGTTGGAGGGG
Found at i:69961 original size:20 final size:20
Alignment explanation
Indices: 69938--69979 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
69928 CTCTTTTCTC
69938 TCTCATTGCTCTTCTCTCTT
1 TCTCATTGCTCTTCTCTCTT
* * *
69958 TCTCTTTTCTCTTTTCTCTT
1 TCTCATTGCTCTTCTCTCTT
69978 TC
1 TC
69980 CTTTCTCTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.02, C:0.33, G:0.02, T:0.62
Consensus pattern (20 bp):
TCTCATTGCTCTTCTCTCTT
Left flanking sequence: Indices 69438 -- 69937
GTATTAGTGTTATGGTCTTGGTTTGGTGGTGTATTGGTTATTCCGTTGGTTTACCGTTGATTTCC
GTTGGTTTATCGTTGGTTTACTGTTGGTTTACCGTTGGTTTGCCGTTGGTTTCTTGGTGTATGGT
TATAACCGTTGGTTATTTAACGTATGGTTATTACCGTTGGTTATTTAACGTATGGTTATTACCGT
TGGTTATTTAGCGTGTGCTTATTATCACTGGTTCGTATGGTGCATTAGGTGTTGCGTTTTTCTCA
TGCTGGCGAGTTACTTGCATTGGTGGTCATTTTTGTATGTCCTTTGCCATCTTCACCTGGTCATT
TCTCACTCTACCGGTTGCTCTGACACTACCCGCACTACTCTAACTCTACCCCATTACTCTACCCT
ACCATTGCTCTCTCCACCTCATGCTCTCTCCACCTCATGCTCTATCCACCCCATTGCTCTCAACT
ACCCCATTGCTTTTCCCTTTTCTCTTCTCTTCTCTCTCTTTTCTC
Right flanking sequence: Indices 69980 -- 70479
CTTTCTCTAGTCTACCTTATTTTATAGTCGCATCCCAAAACGGTAGGGTCACTGGTCACTAGCCG
GACCGCCCGTGGCCAGCCCTGCGTGCACCCAGCTTGTGCCATGGCACCGGCTTGTGCAGCCTGTG
CCCAGGCTAAATATGGGGCCATGGTTCTGTGTCGTCTCCGGCGGTTCCGAGGGCCCACCACCGGG
CCCTCGCACCACCGTCGGCCGACACCGTGCATGCCCTGTACGTCTAATGCACGTCGACGGGTCCG
CCCGCCCTCGGTGGCGGTTGGTTCGACACCTGGGGGTGATCAGCAACCTCCACGCGGGGGAGACG
CCACAAAAACGTAGCGATCGGCGGACGCGAAGCGAGAGGGGCAGTGGTGATGTGGTGATGGTGGT
GATGGCGTCGTTGGAGGGGCTTGGGTGGGTGCGTGGTGGTGGGTCCACCGGGTTACCGCATTGGG
AACGGGCCAATGGATTGGATGCACCAAGCGAATAATAGAAGGCGA
Found at i:69978 original size:7 final size:7
Alignment explanation
Indices: 69902--69978 Score: 61
Period size: 7 Copynumber: 10.6 Consensus size: 7
69892 TACCCCATTG
*
69902 CTTTTCC
1 CTTTTCT
69909 CTTTTCT
1 CTTTTCT
69916 C--TTCT
1 CTTTTCT
69921 CTTCTCTCT
1 CTT-T-TCT
69930 CTTTTCT
1 CTTTTCT
69937 CTCTCATTGCT
1 CT-T--TT-CT
*
69948 CTTCTCT
1 CTTTTCT
69955 C-TTTCT
1 CTTTTCT
69961 CTTTTCT
1 CTTTTCT
69968 CTTTTCT
1 CTTTTCT
69975 CTTT
1 CTTT
69979 CCTTTCTCTA
Statistics
Matches: 58, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
5 5 0.09
6 5 0.09
7 31 0.53
8 4 0.07
9 6 0.10
10 3 0.05
11 4 0.07
ACGTcount: A:0.01, C:0.35, G:0.01, T:0.62
Consensus pattern (7 bp):
CTTTTCT
Left flanking sequence: Indices 69402 -- 69901
TATGGGGTTATGTTGGTGTATTGGGGTCTAGGTGGTGTATTAGTGTTATGGTCTTGGTTTGGTGG
TGTATTGGTTATTCCGTTGGTTTACCGTTGATTTCCGTTGGTTTATCGTTGGTTTACTGTTGGTT
TACCGTTGGTTTGCCGTTGGTTTCTTGGTGTATGGTTATAACCGTTGGTTATTTAACGTATGGTT
ATTACCGTTGGTTATTTAACGTATGGTTATTACCGTTGGTTATTTAGCGTGTGCTTATTATCACT
GGTTCGTATGGTGCATTAGGTGTTGCGTTTTTCTCATGCTGGCGAGTTACTTGCATTGGTGGTCA
TTTTTGTATGTCCTTTGCCATCTTCACCTGGTCATTTCTCACTCTACCGGTTGCTCTGACACTAC
CCGCACTACTCTAACTCTACCCCATTACTCTACCCTACCATTGCTCTCTCCACCTCATGCTCTCT
CCACCTCATGCTCTATCCACCCCATTGCTCTCAACTACCCCATTG
Right flanking sequence: Indices 69979 -- 70478
CCTTTCTCTAGTCTACCTTATTTTATAGTCGCATCCCAAAACGGTAGGGTCACTGGTCACTAGCC
GGACCGCCCGTGGCCAGCCCTGCGTGCACCCAGCTTGTGCCATGGCACCGGCTTGTGCAGCCTGT
GCCCAGGCTAAATATGGGGCCATGGTTCTGTGTCGTCTCCGGCGGTTCCGAGGGCCCACCACCGG
GCCCTCGCACCACCGTCGGCCGACACCGTGCATGCCCTGTACGTCTAATGCACGTCGACGGGTCC
GCCCGCCCTCGGTGGCGGTTGGTTCGACACCTGGGGGTGATCAGCAACCTCCACGCGGGGGAGAC
GCCACAAAAACGTAGCGATCGGCGGACGCGAAGCGAGAGGGGCAGTGGTGATGTGGTGATGGTGG
TGATGGCGTCGTTGGAGGGGCTTGGGTGGGTGCGTGGTGGTGGGTCCACCGGGTTACCGCATTGG
GAACGGGCCAATGGATTGGATGCACCAAGCGAATAATAGAAGGCG
Found at i:70680 original size:13 final size:13
Alignment explanation
Indices: 70664--70693 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
70654 GGTATATTGA
70664 TGTGTTTAAATGG
1 TGTGTTTAAATGG
*
70677 TGTGTTTAATTGG
1 TGTGTTTAAATGG
70690 TGTG
1 TGTG
70694 ATAATTGGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (13 bp):
TGTGTTTAAATGG
Left flanking sequence: Indices 70164 -- 70663
CCACCACCGGGCCCTCGCACCACCGTCGGCCGACACCGTGCATGCCCTGTACGTCTAATGCACGT
CGACGGGTCCGCCCGCCCTCGGTGGCGGTTGGTTCGACACCTGGGGGTGATCAGCAACCTCCACG
CGGGGGAGACGCCACAAAAACGTAGCGATCGGCGGACGCGAAGCGAGAGGGGCAGTGGTGATGTG
GTGATGGTGGTGATGGCGTCGTTGGAGGGGCTTGGGTGGGTGCGTGGTGGTGGGTCCACCGGGTT
ACCGCATTGGGAACGGGCCAATGGATTGGATGCACCAAGCGAATAATAGAAGGCGAAGAAGGGGG
AATTCTCGGCACAAGCCATTGTGTCGGGTGGGCCTGAAGGTGGAGGTGGATGTGTGTAGGCAACT
CGGGGGACGGGAGAGTGGGGAGAGCAACGTGGTGGTTGGGAAGAGACTGGGCGGTTAATGGGACG
GTTACGGGGATGGTAACCGGGGGCGATACTGGTGTGGTATATTGA
Right flanking sequence: Indices 70694 -- 71193
ATAATTGGTGTGGTTGACAAGTGTGTTTAACTATTTTTTAATTAGTTTGGTCAACTGGTGTGGTT
AACTGTATTATTTTAATTAGTGTTTAACTGGTTTGGTTTAATTAGTGTGGTGTACTGGTTTGGCC
AACTGGAGTAGTCCTGTTGTTTAATTGGTGGTGGTGCTGTGGTGTGCCCTGGTGTGCCCTGGTGT
GGTGCTGTGCTGGGTGCTGGACCTATTGGGTAATTCCTTTCGCTGCTAGATCTGGTGATGTCATC
GGTCCCGCAAGGCTTAGTCGGGGGACAAATCCGCGTCGCAACGCCCAGTTCCACCACCCTACGTT
CCACCACCCGACGTTCCCCCGACCTCGCCAGCTGATACCCCTCTCTTATCTCTCGTTGTTAGCCC
CCCGCCTGTTGACCCACTTTTACCCCCGCTCCACGCATTGTTCTCCCTGGCCTGTGCCCCTGTAG
ACACTGAGATCGTCCACGACATCGGTTGTGCTTTCGTCACCACCA
Found at i:70785 original size:25 final size:25
Alignment explanation
Indices: 70757--70806 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
70747 ACTGGTGTGG
*
70757 TTAACT-GTATTATTTTAATTAGTGT
1 TTAACTGGT-TTAGTTTAATTAGTGT
*
70782 TTAACTGGTTTGGTTTAATTAGTGT
1 TTAACTGGTTTAGTTTAATTAGTGT
70807 GGTGTACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.54
Consensus pattern (25 bp):
TTAACTGGTTTAGTTTAATTAGTGT
Left flanking sequence: Indices 70257 -- 70756
TTGGTTCGACACCTGGGGGTGATCAGCAACCTCCACGCGGGGGAGACGCCACAAAAACGTAGCGA
TCGGCGGACGCGAAGCGAGAGGGGCAGTGGTGATGTGGTGATGGTGGTGATGGCGTCGTTGGAGG
GGCTTGGGTGGGTGCGTGGTGGTGGGTCCACCGGGTTACCGCATTGGGAACGGGCCAATGGATTG
GATGCACCAAGCGAATAATAGAAGGCGAAGAAGGGGGAATTCTCGGCACAAGCCATTGTGTCGGG
TGGGCCTGAAGGTGGAGGTGGATGTGTGTAGGCAACTCGGGGGACGGGAGAGTGGGGAGAGCAAC
GTGGTGGTTGGGAAGAGACTGGGCGGTTAATGGGACGGTTACGGGGATGGTAACCGGGGGCGATA
CTGGTGTGGTATATTGATGTGTTTAAATGGTGTGTTTAATTGGTGTGATAATTGGTGTGGTTGAC
AAGTGTGTTTAACTATTTTTTAATTAGTTTGGTCAACTGGTGTGG
Right flanking sequence: Indices 70807 -- 71306
GGTGTACTGGTTTGGCCAACTGGAGTAGTCCTGTTGTTTAATTGGTGGTGGTGCTGTGGTGTGCC
CTGGTGTGCCCTGGTGTGGTGCTGTGCTGGGTGCTGGACCTATTGGGTAATTCCTTTCGCTGCTA
GATCTGGTGATGTCATCGGTCCCGCAAGGCTTAGTCGGGGGACAAATCCGCGTCGCAACGCCCAG
TTCCACCACCCTACGTTCCACCACCCGACGTTCCCCCGACCTCGCCAGCTGATACCCCTCTCTTA
TCTCTCGTTGTTAGCCCCCCGCCTGTTGACCCACTTTTACCCCCGCTCCACGCATTGTTCTCCCT
GGCCTGTGCCCCTGTAGACACTGAGATCGTCCACGACATCGGTTGTGCTTTCGTCACCACCACAC
ATGGAGTTTCGGTACCCCCAACACCGCGTATCCGTAGCCCGGTAGCGACGATGGCGCATACCGGG
GCCCCGCGCTGCTGCTCCCGTTTGTGGCGGAGCACCCCCCTCTAC
Found at i:70876 original size:10 final size:10
Alignment explanation
Indices: 70863--70889 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
70853 GGTGGTGCTG
70863 TGGTGTGCCC
1 TGGTGTGCCC
70873 TGGTGTGCCC
1 TGGTGTGCCC
70883 TGGTGTG
1 TGGTGTG
70890 GTGCTGTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.22, G:0.44, T:0.33
Consensus pattern (10 bp):
TGGTGTGCCC
Left flanking sequence: Indices 70363 -- 70862
TGGTGGTGATGGCGTCGTTGGAGGGGCTTGGGTGGGTGCGTGGTGGTGGGTCCACCGGGTTACCG
CATTGGGAACGGGCCAATGGATTGGATGCACCAAGCGAATAATAGAAGGCGAAGAAGGGGGAATT
CTCGGCACAAGCCATTGTGTCGGGTGGGCCTGAAGGTGGAGGTGGATGTGTGTAGGCAACTCGGG
GGACGGGAGAGTGGGGAGAGCAACGTGGTGGTTGGGAAGAGACTGGGCGGTTAATGGGACGGTTA
CGGGGATGGTAACCGGGGGCGATACTGGTGTGGTATATTGATGTGTTTAAATGGTGTGTTTAATT
GGTGTGATAATTGGTGTGGTTGACAAGTGTGTTTAACTATTTTTTAATTAGTTTGGTCAACTGGT
GTGGTTAACTGTATTATTTTAATTAGTGTTTAACTGGTTTGGTTTAATTAGTGTGGTGTACTGGT
TTGGCCAACTGGAGTAGTCCTGTTGTTTAATTGGTGGTGGTGCTG
Right flanking sequence: Indices 70890 -- 71389
GTGCTGTGCTGGGTGCTGGACCTATTGGGTAATTCCTTTCGCTGCTAGATCTGGTGATGTCATCG
GTCCCGCAAGGCTTAGTCGGGGGACAAATCCGCGTCGCAACGCCCAGTTCCACCACCCTACGTTC
CACCACCCGACGTTCCCCCGACCTCGCCAGCTGATACCCCTCTCTTATCTCTCGTTGTTAGCCCC
CCGCCTGTTGACCCACTTTTACCCCCGCTCCACGCATTGTTCTCCCTGGCCTGTGCCCCTGTAGA
CACTGAGATCGTCCACGACATCGGTTGTGCTTTCGTCACCACCACACATGGAGTTTCGGTACCCC
CAACACCGCGTATCCGTAGCCCGGTAGCGACGATGGCGCATACCGGGGCCCCGCGCTGCTGCTCC
CGTTTGTGGCGGAGCACCCCCCTCTACTCCCCGTTCTGCTCCTGTTCGCTTCGCCCGTGGCCTCG
GGTTTATCTCCAGCCCGGTTGCTAACTCCGGGCCTCTCCCAAACA
Found at i:71021 original size:15 final size:15
Alignment explanation
Indices: 71001--71035 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
70991 GCAACGCCCA
*
71001 GTTCCACCACCCTAC
1 GTTCCACCACCCGAC
71016 GTTCCACCACCCGAC
1 GTTCCACCACCCGAC
71031 GTTCC
1 GTTCC
71036 CCCGACCTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.17, C:0.51, G:0.11, T:0.20
Consensus pattern (15 bp):
GTTCCACCACCCGAC
Left flanking sequence: Indices 70501 -- 71000
AAGCCATTGTGTCGGGTGGGCCTGAAGGTGGAGGTGGATGTGTGTAGGCAACTCGGGGGACGGGA
GAGTGGGGAGAGCAACGTGGTGGTTGGGAAGAGACTGGGCGGTTAATGGGACGGTTACGGGGATG
GTAACCGGGGGCGATACTGGTGTGGTATATTGATGTGTTTAAATGGTGTGTTTAATTGGTGTGAT
AATTGGTGTGGTTGACAAGTGTGTTTAACTATTTTTTAATTAGTTTGGTCAACTGGTGTGGTTAA
CTGTATTATTTTAATTAGTGTTTAACTGGTTTGGTTTAATTAGTGTGGTGTACTGGTTTGGCCAA
CTGGAGTAGTCCTGTTGTTTAATTGGTGGTGGTGCTGTGGTGTGCCCTGGTGTGCCCTGGTGTGG
TGCTGTGCTGGGTGCTGGACCTATTGGGTAATTCCTTTCGCTGCTAGATCTGGTGATGTCATCGG
TCCCGCAAGGCTTAGTCGGGGGACAAATCCGCGTCGCAACGCCCA
Right flanking sequence: Indices 71036 -- 71535
CCCGACCTCGCCAGCTGATACCCCTCTCTTATCTCTCGTTGTTAGCCCCCCGCCTGTTGACCCAC
TTTTACCCCCGCTCCACGCATTGTTCTCCCTGGCCTGTGCCCCTGTAGACACTGAGATCGTCCAC
GACATCGGTTGTGCTTTCGTCACCACCACACATGGAGTTTCGGTACCCCCAACACCGCGTATCCG
TAGCCCGGTAGCGACGATGGCGCATACCGGGGCCCCGCGCTGCTGCTCCCGTTTGTGGCGGAGCA
CCCCCCTCTACTCCCCGTTCTGCTCCTGTTCGCTTCGCCCGTGGCCTCGGGTTTATCTCCAGCCC
GGTTGCTAACTCCGGGCCTCTCCCAAACAGGCAACTGTTACAATCACCGTCCCCACCAATATAGC
CGAGTATTTTTTAGCGCCGCCATTGTTAGTCCATGTGGCCCCCAGTGACGGGAGGGGCTACAGAA
CCGCGGGGACCGAGGCACAGGATGACTGTTAGTCAGCCTCACCCC
Found at i:72073 original size:29 final size:28
Alignment explanation
Indices: 72041--72104 Score: 103
Period size: 27 Copynumber: 2.3 Consensus size: 28
72031 TGGCTGTGAG
*
72041 ACAGATCGAGATATAGGATGGTGACATGA
1 ACAGATC-AGAGATAGGATGGTGACATGA
72070 ACAGAT-AGAGATAGGATGGTGACATGA
1 ACAGATCAGAGATAGGATGGTGACATGA
72097 ACAGATCA
1 ACAGATCA
72105 AGAAGTGGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 26 0.79
28 1 0.03
29 6 0.18
ACGTcount: A:0.41, C:0.11, G:0.30, T:0.19
Consensus pattern (28 bp):
ACAGATCAGAGATAGGATGGTGACATGA
Left flanking sequence: Indices 71541 -- 72040
ACCGTTGTCTGGGATAGGGAACTACTAACGGTAAAAAGCAACCCGGGAAAATAGAGTCATCGGTC
ACGGATTAGGCAGCTGCGATAGGCAGCACCGCTATGGGGTGCTGCCACCTTTCTGAGCTCGCCTT
GTTTGTCAGTCGTTAGTAATCCTACCGATTTTCACATGTGGTCCGAGTCCCCGATCGATCAGTTT
CAAATGCCGACAACTTCCCCGGATCGCGAAATCCCGGTGGTTTCACATGCCGGGACCATTGTATC
GGTGGTGATGAAACCGGGCTGTATCGGGACGCGGTGCCTGTTTGTGGCAGCTGCCACAAGGTGAG
AACAATAGGCCACCGTAGACCGGCAGCGACAATGGCTGCAAAGAAATGCGATAAGCCTGTGAAGG
TGCGAACGTGGGGAGCGCGTGTGATGGGCCCATGCGGTACCGCCAGGGTAGCCGTGCATCCGGGT
ACGGCTGGGCCACGTGAGGCGTGGAGGGATAGGATTGGCTGTGAG
Right flanking sequence: Indices 72105 -- 72604
AGAAGTGGGATGTTTGTGAGAGAACAGGTCGAGAGATAGGATGTTTGTGAGAGAACAGATCGAGA
GAACAGATCGAGACAGGATGGTTGTGAGAGTGAACAGATCGAAACGGGTTGGTTGTGAGACTGAG
CAGATCAAGACGGGTTGGTTGTGAGACTGAACAGATCCAGACGTTTTATGGTCAATTTGGGAATT
TATTAATGGGCTTATGGAGTTTAAAATATTTTGGTGTGGCTATTCTATTTTCCGTGGGGTTAAAC
GGTTTGCAGACACATCGGCCAACGGTCCACGCCCGATTCGAACCCGGGAACTGAAGCCACCAGCA
CGCTGGCGATCCGAGAGGGTTTCGCACCGAGTACTTTATCCGAATATGCAACATGCAACAGGTTC
CTGGGACAACGTGTGGTAGTTTGAATCAATGTCAGGTGGTGATGGAGATGACTCATAAAGAAAGT
CCATTACAAAACATGGCAGGACCAACCCAGATAGGCAGGCCAACA
Found at i:72130 original size:31 final size:31
Alignment explanation
Indices: 72068--72171 Score: 103
Period size: 31 Copynumber: 3.5 Consensus size: 31
72058 ATGGTGACAT
*
72068 GAACAGAT--AGAGATAGGATG---GTGACA
1 GAACAGATCAAGAGATAGGATGTTTGTGAGA
*
72094 TGAACAGATCAAGA-AGTGGGATGTTTGTGAGA
1 -GAACAGATCAAGAGA-TAGGATGTTTGTGAGA
* *
72126 GAACAGGTCGAGAGATAGGATGTTTGTGAGA
1 GAACAGATCAAGAGATAGGATGTTTGTGAGA
*
72157 GAACAGATCGAGAGA
1 GAACAGATCAAGAGA
72172 ACAGATCGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
27 8 0.12
28 1 0.02
29 9 0.14
31 40 0.62
32 6 0.09
ACGTcount: A:0.38, C:0.08, G:0.36, T:0.19
Consensus pattern (31 bp):
GAACAGATCAAGAGATAGGATGTTTGTGAGA
Left flanking sequence: Indices 71568 -- 72067
ACGGTAAAAAGCAACCCGGGAAAATAGAGTCATCGGTCACGGATTAGGCAGCTGCGATAGGCAGC
ACCGCTATGGGGTGCTGCCACCTTTCTGAGCTCGCCTTGTTTGTCAGTCGTTAGTAATCCTACCG
ATTTTCACATGTGGTCCGAGTCCCCGATCGATCAGTTTCAAATGCCGACAACTTCCCCGGATCGC
GAAATCCCGGTGGTTTCACATGCCGGGACCATTGTATCGGTGGTGATGAAACCGGGCTGTATCGG
GACGCGGTGCCTGTTTGTGGCAGCTGCCACAAGGTGAGAACAATAGGCCACCGTAGACCGGCAGC
GACAATGGCTGCAAAGAAATGCGATAAGCCTGTGAAGGTGCGAACGTGGGGAGCGCGTGTGATGG
GCCCATGCGGTACCGCCAGGGTAGCCGTGCATCCGGGTACGGCTGGGCCACGTGAGGCGTGGAGG
GATAGGATTGGCTGTGAGACAGATCGAGATATAGGATGGTGACAT
Right flanking sequence: Indices 72172 -- 72671
ACAGATCGAGACAGGATGGTTGTGAGAGTGAACAGATCGAAACGGGTTGGTTGTGAGACTGAGCA
GATCAAGACGGGTTGGTTGTGAGACTGAACAGATCCAGACGTTTTATGGTCAATTTGGGAATTTA
TTAATGGGCTTATGGAGTTTAAAATATTTTGGTGTGGCTATTCTATTTTCCGTGGGGTTAAACGG
TTTGCAGACACATCGGCCAACGGTCCACGCCCGATTCGAACCCGGGAACTGAAGCCACCAGCACG
CTGGCGATCCGAGAGGGTTTCGCACCGAGTACTTTATCCGAATATGCAACATGCAACAGGTTCCT
GGGACAACGTGTGGTAGTTTGAATCAATGTCAGGTGGTGATGGAGATGACTCATAAAGAAAGTCC
ATTACAAAACATGGCAGGACCAACCCAGATAGGCAGGCCAACAACCGTTCGCTAAAGTCTACTTG
GCAAATGGGTACGGATTAGAGTTATTTACCTACGTGAAAAATGTG
Found at i:72171 original size:13 final size:13
Alignment explanation
Indices: 72153--72182 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
72143 GGATGTTTGT
72153 GAGAGAACAGATC
1 GAGAGAACAGATC
72166 GAGAGAACAGATC
1 GAGAGAACAGATC
72179 GAGA
1 GAGA
72183 CAGGATGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.13, G:0.33, T:0.07
Consensus pattern (13 bp):
GAGAGAACAGATC
Left flanking sequence: Indices 71653 -- 72152
CCTTTCTGAGCTCGCCTTGTTTGTCAGTCGTTAGTAATCCTACCGATTTTCACATGTGGTCCGAG
TCCCCGATCGATCAGTTTCAAATGCCGACAACTTCCCCGGATCGCGAAATCCCGGTGGTTTCACA
TGCCGGGACCATTGTATCGGTGGTGATGAAACCGGGCTGTATCGGGACGCGGTGCCTGTTTGTGG
CAGCTGCCACAAGGTGAGAACAATAGGCCACCGTAGACCGGCAGCGACAATGGCTGCAAAGAAAT
GCGATAAGCCTGTGAAGGTGCGAACGTGGGGAGCGCGTGTGATGGGCCCATGCGGTACCGCCAGG
GTAGCCGTGCATCCGGGTACGGCTGGGCCACGTGAGGCGTGGAGGGATAGGATTGGCTGTGAGAC
AGATCGAGATATAGGATGGTGACATGAACAGATAGAGATAGGATGGTGACATGAACAGATCAAGA
AGTGGGATGTTTGTGAGAGAACAGGTCGAGAGATAGGATGTTTGT
Right flanking sequence: Indices 72183 -- 72682
CAGGATGGTTGTGAGAGTGAACAGATCGAAACGGGTTGGTTGTGAGACTGAGCAGATCAAGACGG
GTTGGTTGTGAGACTGAACAGATCCAGACGTTTTATGGTCAATTTGGGAATTTATTAATGGGCTT
ATGGAGTTTAAAATATTTTGGTGTGGCTATTCTATTTTCCGTGGGGTTAAACGGTTTGCAGACAC
ATCGGCCAACGGTCCACGCCCGATTCGAACCCGGGAACTGAAGCCACCAGCACGCTGGCGATCCG
AGAGGGTTTCGCACCGAGTACTTTATCCGAATATGCAACATGCAACAGGTTCCTGGGACAACGTG
TGGTAGTTTGAATCAATGTCAGGTGGTGATGGAGATGACTCATAAAGAAAGTCCATTACAAAACA
TGGCAGGACCAACCCAGATAGGCAGGCCAACAACCGTTCGCTAAAGTCTACTTGGCAAATGGGTA
CGGATTAGAGTTATTTACCTACGTGAAAAATGTGTCAAGCCTGCA
Found at i:72172 original size:44 final size:43
Alignment explanation
Indices: 72122--72211 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 43
72112 GGATGTTTGT
* * *
72122 GAGAGAACAGGTCGAGAGATAGGATGTTTGTGAGA-GAACAGATC
1 GAGAGAACAGATC--GAGACAGGATGGTTGTGAGAGGAACAGATC
72166 GAGAGAACAGATCGAGACAGGATGGTTGTGAGAGTGAACAGATC
1 GAGAGAACAGATCGAGACAGGATGGTTGTGAGAG-GAACAGATC
72210 GA
1 GA
72212 AACGGGTTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
42 18 0.44
44 23 0.56
ACGTcount: A:0.37, C:0.10, G:0.37, T:0.17
Consensus pattern (43 bp):
GAGAGAACAGATCGAGACAGGATGGTTGTGAGAGGAACAGATC
Left flanking sequence: Indices 71622 -- 72121
CGATAGGCAGCACCGCTATGGGGTGCTGCCACCTTTCTGAGCTCGCCTTGTTTGTCAGTCGTTAG
TAATCCTACCGATTTTCACATGTGGTCCGAGTCCCCGATCGATCAGTTTCAAATGCCGACAACTT
CCCCGGATCGCGAAATCCCGGTGGTTTCACATGCCGGGACCATTGTATCGGTGGTGATGAAACCG
GGCTGTATCGGGACGCGGTGCCTGTTTGTGGCAGCTGCCACAAGGTGAGAACAATAGGCCACCGT
AGACCGGCAGCGACAATGGCTGCAAAGAAATGCGATAAGCCTGTGAAGGTGCGAACGTGGGGAGC
GCGTGTGATGGGCCCATGCGGTACCGCCAGGGTAGCCGTGCATCCGGGTACGGCTGGGCCACGTG
AGGCGTGGAGGGATAGGATTGGCTGTGAGACAGATCGAGATATAGGATGGTGACATGAACAGATA
GAGATAGGATGGTGACATGAACAGATCAAGAAGTGGGATGTTTGT
Right flanking sequence: Indices 72212 -- 72711
AACGGGTTGGTTGTGAGACTGAGCAGATCAAGACGGGTTGGTTGTGAGACTGAACAGATCCAGAC
GTTTTATGGTCAATTTGGGAATTTATTAATGGGCTTATGGAGTTTAAAATATTTTGGTGTGGCTA
TTCTATTTTCCGTGGGGTTAAACGGTTTGCAGACACATCGGCCAACGGTCCACGCCCGATTCGAA
CCCGGGAACTGAAGCCACCAGCACGCTGGCGATCCGAGAGGGTTTCGCACCGAGTACTTTATCCG
AATATGCAACATGCAACAGGTTCCTGGGACAACGTGTGGTAGTTTGAATCAATGTCAGGTGGTGA
TGGAGATGACTCATAAAGAAAGTCCATTACAAAACATGGCAGGACCAACCCAGATAGGCAGGCCA
ACAACCGTTCGCTAAAGTCTACTTGGCAAATGGGTACGGATTAGAGTTATTTACCTACGTGAAAA
ATGTGTCAAGCCTGCATCTTATGTAATAACACTACACGACGCTCA
Found at i:72205 original size:31 final size:31
Alignment explanation
Indices: 72170--72277 Score: 153
Period size: 31 Copynumber: 3.5 Consensus size: 31
72160 CAGATCGAGA
* * *
72170 GAACAGATCGAGACAGGATGGTTGTGAGAGT
1 GAACAGATCGAGACGGGTTGGTTGTGAGACT
*
72201 GAACAGATCGAAACGGGTTGGTTGTGAGACT
1 GAACAGATCGAGACGGGTTGGTTGTGAGACT
* *
72232 GAGCAGATCAAGACGGGTTGGTTGTGAGACT
1 GAACAGATCGAGACGGGTTGGTTGTGAGACT
*
72263 GAACAGATCCAGACG
1 GAACAGATCGAGACG
72278 TTTTATGGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.31, C:0.14, G:0.36, T:0.19
Consensus pattern (31 bp):
GAACAGATCGAGACGGGTTGGTTGTGAGACT
Left flanking sequence: Indices 71670 -- 72169
TGTTTGTCAGTCGTTAGTAATCCTACCGATTTTCACATGTGGTCCGAGTCCCCGATCGATCAGTT
TCAAATGCCGACAACTTCCCCGGATCGCGAAATCCCGGTGGTTTCACATGCCGGGACCATTGTAT
CGGTGGTGATGAAACCGGGCTGTATCGGGACGCGGTGCCTGTTTGTGGCAGCTGCCACAAGGTGA
GAACAATAGGCCACCGTAGACCGGCAGCGACAATGGCTGCAAAGAAATGCGATAAGCCTGTGAAG
GTGCGAACGTGGGGAGCGCGTGTGATGGGCCCATGCGGTACCGCCAGGGTAGCCGTGCATCCGGG
TACGGCTGGGCCACGTGAGGCGTGGAGGGATAGGATTGGCTGTGAGACAGATCGAGATATAGGAT
GGTGACATGAACAGATAGAGATAGGATGGTGACATGAACAGATCAAGAAGTGGGATGTTTGTGAG
AGAACAGGTCGAGAGATAGGATGTTTGTGAGAGAACAGATCGAGA
Right flanking sequence: Indices 72278 -- 72777
TTTTATGGTCAATTTGGGAATTTATTAATGGGCTTATGGAGTTTAAAATATTTTGGTGTGGCTAT
TCTATTTTCCGTGGGGTTAAACGGTTTGCAGACACATCGGCCAACGGTCCACGCCCGATTCGAAC
CCGGGAACTGAAGCCACCAGCACGCTGGCGATCCGAGAGGGTTTCGCACCGAGTACTTTATCCGA
ATATGCAACATGCAACAGGTTCCTGGGACAACGTGTGGTAGTTTGAATCAATGTCAGGTGGTGAT
GGAGATGACTCATAAAGAAAGTCCATTACAAAACATGGCAGGACCAACCCAGATAGGCAGGCCAA
CAACCGTTCGCTAAAGTCTACTTGGCAAATGGGTACGGATTAGAGTTATTTACCTACGTGAAAAA
TGTGTCAAGCCTGCATCTTATGTAATAACACTACACGACGCTCAGTTTGTGTCAACCCCAGACTC
AACCACGTGCCACCCGTAACGGATTCGCACTACAGGCATCCTTTG
Found at i:77345 original size:24 final size:23
Alignment explanation
Indices: 77293--77356 Score: 62
Period size: 24 Copynumber: 2.8 Consensus size: 23
77283 GAGCCGAGCG
77293 GGAG-GAGA-AGGAGAAGAAGCA
1 GGAGAGAGAGAGGAGAAGAAGCA
* *
77314 GGAGGAGAGAGAGGAGACGAAGGCT
1 GGA-GAGAGAGAGGAGAAGAA-GCA
77339 GGAGAGA-AGAGCGAGAAG
1 GGAGAGAGAGAG-GAGAAG
77357 GATGAGAAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 3 0.09
22 1 0.03
23 8 0.23
24 18 0.51
25 5 0.14
ACGTcount: A:0.42, C:0.06, G:0.50, T:0.02
Consensus pattern (23 bp):
GGAGAGAGAGAGGAGAAGAAGCA
Left flanking sequence: Indices 76793 -- 77292
TACTACTTGGGCCAGCGCACCAAGAACTGGCTCCCCGTGGCGACGGAGCCCGAGTTCCGCGCCAC
CACCGAGTTTTTGGTGGCCAACTTCATCGAAATGAACAAGTTGTGGGTGCGTTTGCAGCACCAGG
GCCACCTGAGCGAGCGCGACCAGCGGTTGGCCGAGCGCGACCAGCTCAAAATCCTTGTTGGGCTG
CAGTTGGTGCGGATTTCCCAGGTGATCGACGAGTTCCAGGGGGACTCGTACCTGGCGATCGAGTA
CTACCGCGACCTGGTGTTCCCCATTGTGACGCTGCAGATTGTTGCGTGCCGCGACAGCTTGGCCC
AGAGCTACTTGGTTGATGTGTTGATCCAGATCTTTCCCGACGAGTTCCATTTTGCTACTTTGGAC
CAGTTTTTGGGGTTGATTTTGCAGGTGCACCCGAGTCTTACCAAGGGGGACTTGGTGAGCAGCCT
TGTGGAGCGTTTTGTGAAGTACCAGGACGAGAAGCGAGCCGAGCG
Right flanking sequence: Indices 77357 -- 77856
GATGAGAAGAATGAAAAGAATGAGAAGATAGAGAATGAGAAGGGAGAGAATGAGAAGGGAGAGAA
TGAGAAGGGAGAGAAGAATGAGGAGACAGAGAAGACCGAGAAGAATGAGAAGGTTGAGAAGGATG
AAAAGGTTGAGAAGGATGAGAAGGCTGATAAAGCTGAAGATAAGGATGAGGCTGAGAAGACTGAC
AAGACTCAGGCCGAGGAGACTGGCGAAAAGGAGACCGGGACTGATGAGACCACGGAAGCCACCAA
GGCTGACGCTGAAGACAAGCCCGAGTCTCAAGAGGTTGAACCCAAGCCTGAGTCTTTGGAAAGTG
AATCCAAGCCTGAGACCGCTGACCAGACAGCCAAGACTGCGTCTGAGCCCGCAGCCAAGGAGGTG
TCTCAGAAGGACGAAGCTAAGTCTAAGTCCAAGGACGAGGTCGAGTCTGAAGTCTCAGCTGAGCC
TAAAGACAAAGCCGAGCCCGAGGATTCCACCGAGACAGACCCCTC
Found at i:77363 original size:9 final size:9
Alignment explanation
Indices: 77351--77510 Score: 83
Period size: 9 Copynumber: 18.8 Consensus size: 9
77341 AGAGAAGAGC
77351 GAGAAGGAT
1 GAGAAGGAT
*
77360 GAGAAGAAT
1 GAGAAGGAT
* *
77369 GAAAAGAAT
1 GAGAAGGAT
77378 GAGAA-GAT
1 GAGAAGGAT
*
77386 -AG-AGAAT
1 GAGAAGGAT
77393 GAGAAGG--
1 GAGAAGGAT
*
77400 GAG-AGAAT
1 GAGAAGGAT
77408 GAGAAGG--
1 GAGAAGGAT
*
77415 GAG-AGAAT
1 GAGAAGGAT
77423 GAGAAGGGA-
1 GAGAA-GGAT
*
77432 GAGAAGAAT
1 GAGAAGGAT
* *
77441 GAGGA-GACA
1 GAGAAGGA-T
*
77450 GAGAA-GACC
1 GAGAAGGA-T
*
77459 GAGAAGAAT
1 GAGAAGGAT
*
77468 GAGAAGGTT
1 GAGAAGGAT
77477 GAGAAGGAT
1 GAGAAGGAT
* *
77486 GAAAAGGTT
1 GAGAAGGAT
77495 GAGAAGGAT
1 GAGAAGGAT
77504 GAGAAGG
1 GAGAAGG
77511 CTGATAAAGC
Statistics
Matches: 113, Mismatches: 25, Indels: 26
0.69 0.15 0.16
Matches are distributed among these distances:
6 5 0.04
7 10 0.09
8 13 0.12
9 82 0.73
10 3 0.03
ACGTcount: A:0.48, C:0.02, G:0.41, T:0.09
Consensus pattern (9 bp):
GAGAAGGAT
Left flanking sequence: Indices 76851 -- 77350
GCGCCACCACCGAGTTTTTGGTGGCCAACTTCATCGAAATGAACAAGTTGTGGGTGCGTTTGCAG
CACCAGGGCCACCTGAGCGAGCGCGACCAGCGGTTGGCCGAGCGCGACCAGCTCAAAATCCTTGT
TGGGCTGCAGTTGGTGCGGATTTCCCAGGTGATCGACGAGTTCCAGGGGGACTCGTACCTGGCGA
TCGAGTACTACCGCGACCTGGTGTTCCCCATTGTGACGCTGCAGATTGTTGCGTGCCGCGACAGC
TTGGCCCAGAGCTACTTGGTTGATGTGTTGATCCAGATCTTTCCCGACGAGTTCCATTTTGCTAC
TTTGGACCAGTTTTTGGGGTTGATTTTGCAGGTGCACCCGAGTCTTACCAAGGGGGACTTGGTGA
GCAGCCTTGTGGAGCGTTTTGTGAAGTACCAGGACGAGAAGCGAGCCGAGCGGGAGGAGAAGGAG
AAGAAGCAGGAGGAGAGAGAGGAGACGAAGGCTGGAGAGAAGAGC
Right flanking sequence: Indices 77511 -- 78010
CTGATAAAGCTGAAGATAAGGATGAGGCTGAGAAGACTGACAAGACTCAGGCCGAGGAGACTGGC
GAAAAGGAGACCGGGACTGATGAGACCACGGAAGCCACCAAGGCTGACGCTGAAGACAAGCCCGA
GTCTCAAGAGGTTGAACCCAAGCCTGAGTCTTTGGAAAGTGAATCCAAGCCTGAGACCGCTGACC
AGACAGCCAAGACTGCGTCTGAGCCCGCAGCCAAGGAGGTGTCTCAGAAGGACGAAGCTAAGTCT
AAGTCCAAGGACGAGGTCGAGTCTGAAGTCTCAGCTGAGCCTAAAGACAAAGCCGAGCCCGAGGA
TTCCACCGAGACAGACCCCTCTAAGCCTCACGACCCAACCCACGCCTCCACCGAGCTCAAAGACT
CGTCTGAGCTCAGCAACTCCCCCAAGCTCAGCAACTCGCCCAAGGACTCCTCCGAGCTCAGTGAC
CCGCCCAAACCCTCAGACCTTTCCCCCTCCGACCTCTCGCACGAC
Found at i:77391 original size:15 final size:15
Alignment explanation
Indices: 77373--77436 Score: 110
Period size: 15 Copynumber: 4.3 Consensus size: 15
77363 AAGAATGAAA
**
77373 AGAATGAGAAGATAG
1 AGAATGAGAAGGGAG
77388 AGAATGAGAAGGGAG
1 AGAATGAGAAGGGAG
77403 AGAATGAGAAGGGAG
1 AGAATGAGAAGGGAG
77418 AGAATGAGAAGGGAG
1 AGAATGAGAAGGGAG
77433 AGAA
1 AGAA
77437 GAATGAGGAG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 47 1.00
ACGTcount: A:0.50, C:0.00, G:0.42, T:0.08
Consensus pattern (15 bp):
AGAATGAGAAGGGAG
Left flanking sequence: Indices 76873 -- 77372
GGCCAACTTCATCGAAATGAACAAGTTGTGGGTGCGTTTGCAGCACCAGGGCCACCTGAGCGAGC
GCGACCAGCGGTTGGCCGAGCGCGACCAGCTCAAAATCCTTGTTGGGCTGCAGTTGGTGCGGATT
TCCCAGGTGATCGACGAGTTCCAGGGGGACTCGTACCTGGCGATCGAGTACTACCGCGACCTGGT
GTTCCCCATTGTGACGCTGCAGATTGTTGCGTGCCGCGACAGCTTGGCCCAGAGCTACTTGGTTG
ATGTGTTGATCCAGATCTTTCCCGACGAGTTCCATTTTGCTACTTTGGACCAGTTTTTGGGGTTG
ATTTTGCAGGTGCACCCGAGTCTTACCAAGGGGGACTTGGTGAGCAGCCTTGTGGAGCGTTTTGT
GAAGTACCAGGACGAGAAGCGAGCCGAGCGGGAGGAGAAGGAGAAGAAGCAGGAGGAGAGAGAGG
AGACGAAGGCTGGAGAGAAGAGCGAGAAGGATGAGAAGAATGAAA
Right flanking sequence: Indices 77437 -- 77936
GAATGAGGAGACAGAGAAGACCGAGAAGAATGAGAAGGTTGAGAAGGATGAAAAGGTTGAGAAGG
ATGAGAAGGCTGATAAAGCTGAAGATAAGGATGAGGCTGAGAAGACTGACAAGACTCAGGCCGAG
GAGACTGGCGAAAAGGAGACCGGGACTGATGAGACCACGGAAGCCACCAAGGCTGACGCTGAAGA
CAAGCCCGAGTCTCAAGAGGTTGAACCCAAGCCTGAGTCTTTGGAAAGTGAATCCAAGCCTGAGA
CCGCTGACCAGACAGCCAAGACTGCGTCTGAGCCCGCAGCCAAGGAGGTGTCTCAGAAGGACGAA
GCTAAGTCTAAGTCCAAGGACGAGGTCGAGTCTGAAGTCTCAGCTGAGCCTAAAGACAAAGCCGA
GCCCGAGGATTCCACCGAGACAGACCCCTCTAAGCCTCACGACCCAACCCACGCCTCCACCGAGC
TCAAAGACTCGTCTGAGCTCAGCAACTCCCCCAAGCTCAGCAACT
Found at i:77454 original size:15 final size:15
Alignment explanation
Indices: 77373--77473 Score: 93
Period size: 15 Copynumber: 6.7 Consensus size: 15
77363 AAGAATGAAA
*
77373 AGAATGAGAAGATAG
1 AGAATGAGAAGAGAG
*
77388 AGAATGAGAAGGGAG
1 AGAATGAGAAGAGAG
*
77403 AGAATGAGAAGGGAG
1 AGAATGAGAAGAGAG
*
77418 AGAATGAGAAGGGAG
1 AGAATGAGAAGAGAG
*
77433 AGAA-GA-ATGAG-G
1 AGAATGAGAAGAGAG
77445 AGACA-GAGAAGACCGAG
1 AGA-ATGAGAAGA--GAG
77462 AAGAATGAGAAG
1 -AGAATGAGAAG
77474 GTTGAGAAGG
Statistics
Matches: 74, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
12 4 0.05
13 6 0.08
14 5 0.07
15 47 0.64
16 1 0.01
17 2 0.03
18 9 0.12
ACGTcount: A:0.50, C:0.03, G:0.41, T:0.07
Consensus pattern (15 bp):
AGAATGAGAAGAGAG
Left flanking sequence: Indices 76873 -- 77372
GGCCAACTTCATCGAAATGAACAAGTTGTGGGTGCGTTTGCAGCACCAGGGCCACCTGAGCGAGC
GCGACCAGCGGTTGGCCGAGCGCGACCAGCTCAAAATCCTTGTTGGGCTGCAGTTGGTGCGGATT
TCCCAGGTGATCGACGAGTTCCAGGGGGACTCGTACCTGGCGATCGAGTACTACCGCGACCTGGT
GTTCCCCATTGTGACGCTGCAGATTGTTGCGTGCCGCGACAGCTTGGCCCAGAGCTACTTGGTTG
ATGTGTTGATCCAGATCTTTCCCGACGAGTTCCATTTTGCTACTTTGGACCAGTTTTTGGGGTTG
ATTTTGCAGGTGCACCCGAGTCTTACCAAGGGGGACTTGGTGAGCAGCCTTGTGGAGCGTTTTGT
GAAGTACCAGGACGAGAAGCGAGCCGAGCGGGAGGAGAAGGAGAAGAAGCAGGAGGAGAGAGAGG
AGACGAAGGCTGGAGAGAAGAGCGAGAAGGATGAGAAGAATGAAA
Right flanking sequence: Indices 77474 -- 77973
GTTGAGAAGGATGAAAAGGTTGAGAAGGATGAGAAGGCTGATAAAGCTGAAGATAAGGATGAGGC
TGAGAAGACTGACAAGACTCAGGCCGAGGAGACTGGCGAAAAGGAGACCGGGACTGATGAGACCA
CGGAAGCCACCAAGGCTGACGCTGAAGACAAGCCCGAGTCTCAAGAGGTTGAACCCAAGCCTGAG
TCTTTGGAAAGTGAATCCAAGCCTGAGACCGCTGACCAGACAGCCAAGACTGCGTCTGAGCCCGC
AGCCAAGGAGGTGTCTCAGAAGGACGAAGCTAAGTCTAAGTCCAAGGACGAGGTCGAGTCTGAAG
TCTCAGCTGAGCCTAAAGACAAAGCCGAGCCCGAGGATTCCACCGAGACAGACCCCTCTAAGCCT
CACGACCCAACCCACGCCTCCACCGAGCTCAAAGACTCGTCTGAGCTCAGCAACTCCCCCAAGCT
CAGCAACTCGCCCAAGGACTCCTCCGAGCTCAGTGACCCGCCCAA
Found at i:77919 original size:18 final size:18
Alignment explanation
Indices: 77907--77944 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
77897 GACTCGTCTG
*
77907 AGCTCAGCAACTCCCCCA
1 AGCTCAGCAACTCGCCCA
77925 AGCTCAGCAACTCGCCCA
1 AGCTCAGCAACTCGCCCA
77943 AG
1 AG
77945 GACTCCTCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.45, G:0.16, T:0.11
Consensus pattern (18 bp):
AGCTCAGCAACTCGCCCA
Left flanking sequence: Indices 77407 -- 77906
TGAGAAGGGAGAGAATGAGAAGGGAGAGAAGAATGAGGAGACAGAGAAGACCGAGAAGAATGAGA
AGGTTGAGAAGGATGAAAAGGTTGAGAAGGATGAGAAGGCTGATAAAGCTGAAGATAAGGATGAG
GCTGAGAAGACTGACAAGACTCAGGCCGAGGAGACTGGCGAAAAGGAGACCGGGACTGATGAGAC
CACGGAAGCCACCAAGGCTGACGCTGAAGACAAGCCCGAGTCTCAAGAGGTTGAACCCAAGCCTG
AGTCTTTGGAAAGTGAATCCAAGCCTGAGACCGCTGACCAGACAGCCAAGACTGCGTCTGAGCCC
GCAGCCAAGGAGGTGTCTCAGAAGGACGAAGCTAAGTCTAAGTCCAAGGACGAGGTCGAGTCTGA
AGTCTCAGCTGAGCCTAAAGACAAAGCCGAGCCCGAGGATTCCACCGAGACAGACCCCTCTAAGC
CTCACGACCCAACCCACGCCTCCACCGAGCTCAAAGACTCGTCTG
Right flanking sequence: Indices 77945 -- 78444
GACTCCTCCGAGCTCAGTGACCCGCCCAAACCCTCAGACCTTTCCCCCTCCGACCTCTCGCACGA
CCTCTCGCAACTCACCCTCACCGCAGACCTCTCCGACCAGCTCTTCGACGTGTTCTGGGACTTCT
ACCAGCAGCTCTACCAGCTGGACCCCGAGATGCCGGCGCTGGAACACCTGCGCATCCTCGGGCTG
ATCATCCAGGTGGCGTTGGCCTTCGACGTGGACGCCAAGCACCACGCAGCCAACTTGAACAAGGT
GTACGAGTTCGCGGCCCGCCACTTGCTGGCGGCCCAGAGCGTCGAGTTGCTCGTGGCCCCGCTCC
AGGTGACGCCGCTGGTGGCAGCCTTGGCCGAGATGACCTTCCAGTACGCGCTCTTCGAGCAGTTG
GACCCCCCGCACCAGAAACGGGTGGCGGTGGCGGTGGCGGAGAAGGTGATCGCGCTCGGCGAGCC
GTTGGCGTCCACCGCGCTCCTCGACGCGGTGTTCCAGTACTTGGG
Found at i:80804 original size:22 final size:21
Alignment explanation
Indices: 80776--80839 Score: 94
Period size: 20 Copynumber: 3.0 Consensus size: 21
80766 GACATGATTG
80776 GAGAATGAAGCTAGAGGTAAGC
1 GAGAATGAAGCTAG-GGTAAGC
*
80798 GAGAATGAAGCTGGGGTAA-C
1 GAGAATGAAGCTAGGGTAAGC
*
80818 GAGAATGAAACTAGGGTAAGC
1 GAGAATGAAGCTAGGGTAAGC
80839 G
1 G
80840 GTATAAATAG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 18 0.47
21 7 0.18
22 13 0.34
ACGTcount: A:0.39, C:0.09, G:0.38, T:0.14
Consensus pattern (21 bp):
GAGAATGAAGCTAGGGTAAGC
Left flanking sequence: Indices 80276 -- 80775
GTGCAATAAAACACCGACGTCGCGAGCTTCGTAGCGCAACGTACTGCAATTGAGCACACAGGCCA
CGTTGGGACCGTAGAAAGCACCAACCACCCCGGTGCTCTGAGACACCAACAGTATCCCAGACATC
GCGAGAACCACAGTCCAACGTTCGGAGTCCAGGCAGACCGCCAAAGGCTGGCCTTGGTACGTGTA
TCTCAAGGTGTGTTCGGGGTAGAATGACGTGAAGAGCTCAACGAAGAAGCGGAACTTCCAACGTT
TCTGGTCATCGAAGGATTCGTCTGGGACCTGTGGGGAGCACTCTTCAAAATTGAAAGTCCATCCG
TCGGAAATGGGAAGGTCTTGGAGGTTGGGAATGTTTGTGTTCGAAGCAGGCTTGGTAGGGAGCGT
GTTGAAATCGTGGCTTTCTCTAGGAAGAAACTGGGCCGGGTGTACCTCATTCTCTTTTCTGGGGA
CGGCACGGTAGGGTTGGCCGAGGCGACGGTTGGCGGACATGATTG
Right flanking sequence: Indices 80840 -- 81339
GTATAAATAGTAGTGCTAGGAGCCACGCTGTGCAAAAATATGCCAGGAAACTGGAGGGCAGCATA
GCTCAACTAAAGCTGTGCTTTGCAGCAGATCACTTAGGAAACCACAATACAGTAGAGTAACCACT
AGGGCAACCCCCAAGGCAATCACAAGGCAACCACTAGGACAACCACCAGGGCAACTGGGTAGCAA
CCACTTGGTAGCAACCACTAGGCCTGGGTTCCATTGGGATCCGGAGAGTAGTACCGTGACTCGCT
GGTTAGTGAAATGTCAGTCCCACGATGTTGACGTTCTTGACGAGTTGCCAGGACCACGTCGTGGG
TGTTTGACCGCATGTGTATCCCTCCTGGACCCAGCTACAAATACGAGTGTCGTTAGTTTTTCAAT
TTACCGGGCTCAACTCGCTGACATTTTCTCCTCGTTCCTTATTTTGCAGCCACTCGTACCTCATG
CGGACACTACCACCAACAAAGGCGTTGTGCATTACACGGCAGGAG
Found at i:81024 original size:12 final size:12
Alignment explanation
Indices: 80963--81024 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
80953 ACAGTAGAGT
*
80963 AACCACTAGGGC
1 AACCACCAGGGC
* *
80975 AACCCCCAAGGC
1 AACCACCAGGGC
* *
80987 AATCA-CAAGGC
1 AACCACCAGGGC
* *
80998 AACCACTAGGAC
1 AACCACCAGGGC
81010 AACCACCAGGGC
1 AACCACCAGGGC
81022 AAC
1 AAC
81025 TGGGTAGCAA
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
11 10 0.26
12 28 0.74
ACGTcount: A:0.39, C:0.37, G:0.19, T:0.05
Consensus pattern (12 bp):
AACCACCAGGGC
Left flanking sequence: Indices 80463 -- 80962
TACGTGTATCTCAAGGTGTGTTCGGGGTAGAATGACGTGAAGAGCTCAACGAAGAAGCGGAACTT
CCAACGTTTCTGGTCATCGAAGGATTCGTCTGGGACCTGTGGGGAGCACTCTTCAAAATTGAAAG
TCCATCCGTCGGAAATGGGAAGGTCTTGGAGGTTGGGAATGTTTGTGTTCGAAGCAGGCTTGGTA
GGGAGCGTGTTGAAATCGTGGCTTTCTCTAGGAAGAAACTGGGCCGGGTGTACCTCATTCTCTTT
TCTGGGGACGGCACGGTAGGGTTGGCCGAGGCGACGGTTGGCGGACATGATTGGAGAATGAAGCT
AGAGGTAAGCGAGAATGAAGCTGGGGTAACGAGAATGAAACTAGGGTAAGCGGTATAAATAGTAG
TGCTAGGAGCCACGCTGTGCAAAAATATGCCAGGAAACTGGAGGGCAGCATAGCTCAACTAAAGC
TGTGCTTTGCAGCAGATCACTTAGGAAACCACAATACAGTAGAGT
Right flanking sequence: Indices 81025 -- 81524
TGGGTAGCAACCACTTGGTAGCAACCACTAGGCCTGGGTTCCATTGGGATCCGGAGAGTAGTACC
GTGACTCGCTGGTTAGTGAAATGTCAGTCCCACGATGTTGACGTTCTTGACGAGTTGCCAGGACC
ACGTCGTGGGTGTTTGACCGCATGTGTATCCCTCCTGGACCCAGCTACAAATACGAGTGTCGTTA
GTTTTTCAATTTACCGGGCTCAACTCGCTGACATTTTCTCCTCGTTCCTTATTTTGCAGCCACTC
GTACCTCATGCGGACACTACCACCAACAAAGGCGTTGTGCATTACACGGCAGGAGATCCGTGGAA
CTGAAAAGACACCCGTACAGCGGCGACATGCTCCGGGGGTTATAGTGCATCGCCAGCTGAAATCT
GCGCGCAGCCAAACCACTCCGATGAGCATCGCCCTACGTAGCAATTGACATCCCAGAGCCCTACC
CACACTCACACACTAACCACTCGCTGAACTCTACTCGCTAACTCT
Found at i:81046 original size:14 final size:14
Alignment explanation
Indices: 81027--81053 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81017 AGGGCAACTG
81027 GGTAGCAACCACTT
1 GGTAGCAACCACTT
81041 GGTAGCAACCACT
1 GGTAGCAACCACT
81054 AGGCCTGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (14 bp):
GGTAGCAACCACTT
Left flanking sequence: Indices 80527 -- 81026
TCCAACGTTTCTGGTCATCGAAGGATTCGTCTGGGACCTGTGGGGAGCACTCTTCAAAATTGAAA
GTCCATCCGTCGGAAATGGGAAGGTCTTGGAGGTTGGGAATGTTTGTGTTCGAAGCAGGCTTGGT
AGGGAGCGTGTTGAAATCGTGGCTTTCTCTAGGAAGAAACTGGGCCGGGTGTACCTCATTCTCTT
TTCTGGGGACGGCACGGTAGGGTTGGCCGAGGCGACGGTTGGCGGACATGATTGGAGAATGAAGC
TAGAGGTAAGCGAGAATGAAGCTGGGGTAACGAGAATGAAACTAGGGTAAGCGGTATAAATAGTA
GTGCTAGGAGCCACGCTGTGCAAAAATATGCCAGGAAACTGGAGGGCAGCATAGCTCAACTAAAG
CTGTGCTTTGCAGCAGATCACTTAGGAAACCACAATACAGTAGAGTAACCACTAGGGCAACCCCC
AAGGCAATCACAAGGCAACCACTAGGACAACCACCAGGGCAACTG
Right flanking sequence: Indices 81054 -- 81553
AGGCCTGGGTTCCATTGGGATCCGGAGAGTAGTACCGTGACTCGCTGGTTAGTGAAATGTCAGTC
CCACGATGTTGACGTTCTTGACGAGTTGCCAGGACCACGTCGTGGGTGTTTGACCGCATGTGTAT
CCCTCCTGGACCCAGCTACAAATACGAGTGTCGTTAGTTTTTCAATTTACCGGGCTCAACTCGCT
GACATTTTCTCCTCGTTCCTTATTTTGCAGCCACTCGTACCTCATGCGGACACTACCACCAACAA
AGGCGTTGTGCATTACACGGCAGGAGATCCGTGGAACTGAAAAGACACCCGTACAGCGGCGACAT
GCTCCGGGGGTTATAGTGCATCGCCAGCTGAAATCTGCGCGCAGCCAAACCACTCCGATGAGCAT
CGCCCTACGTAGCAATTGACATCCCAGAGCCCTACCCACACTCACACACTAACCACTCGCTGAAC
TCTACTCGCTAACTCTACCTCTAAACTCGAGCTCTCGCCCCGTGC
Found at i:81524 original size:13 final size:14
Alignment explanation
Indices: 81498--81526 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
81488 CACACTAACC
81498 ACTCGCTGAACTCT
1 ACTCGCTGAACTCT
81512 ACTCGCT-AACTCT
1 ACTCGCTGAACTCT
81525 AC
1 AC
81527 CTCTAAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.24, C:0.38, G:0.10, T:0.28
Consensus pattern (14 bp):
ACTCGCTGAACTCT
Left flanking sequence: Indices 80998 -- 81497
AACCACTAGGACAACCACCAGGGCAACTGGGTAGCAACCACTTGGTAGCAACCACTAGGCCTGGG
TTCCATTGGGATCCGGAGAGTAGTACCGTGACTCGCTGGTTAGTGAAATGTCAGTCCCACGATGT
TGACGTTCTTGACGAGTTGCCAGGACCACGTCGTGGGTGTTTGACCGCATGTGTATCCCTCCTGG
ACCCAGCTACAAATACGAGTGTCGTTAGTTTTTCAATTTACCGGGCTCAACTCGCTGACATTTTC
TCCTCGTTCCTTATTTTGCAGCCACTCGTACCTCATGCGGACACTACCACCAACAAAGGCGTTGT
GCATTACACGGCAGGAGATCCGTGGAACTGAAAAGACACCCGTACAGCGGCGACATGCTCCGGGG
GTTATAGTGCATCGCCAGCTGAAATCTGCGCGCAGCCAAACCACTCCGATGAGCATCGCCCTACG
TAGCAATTGACATCCCAGAGCCCTACCCACACTCACACACTAACC
Right flanking sequence: Indices 81527 -- 82026
CTCTAAACTCGAGCTCTCGCCCCGTGCCCCAACCGCGAAAGCTCGGTATTGCACCGTACCTCGAT
CGCTTCGTATGTCTTTAAAGTTTTCCATGCCCATCATGCGTTTGTGGCCCCATCGTGCACTGCAT
CGGTCACCGAGCCAATGCAAACCCGCGAATTACAACGTGTAGTGTCGGCGGCACGGCTGGCCCCT
CTCTCAGGGGAATTAGCACTGCTGACCGCGGTCCCTTGTCCAAACGTTCCATGCGTCCTGTCACC
GTTGACAGCTCGTATTTGGCTCGGAATTCGCAATTTGGTCCTCGCGCCGTGCCACCGCCCACAAA
GCCCGCCGACCCTCCGGCGAGGACGCACGTCCGATAGCCCGGCACTTCCCCGGATATTTGCGACG
CGTACGTCCATTATTGACGCACCGTGCCCTGCGGTTCCCGATAGAGACATGGGTTAGGAGCCGGG
ACTCCACCAGCTCCACAGCAACCAAACCTTACGGGGGTGTTGGCG
Found at i:85037 original size:12 final size:12
Alignment explanation
Indices: 85020--85044 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85010 AACCAATATC
85020 TCTGATAGCTAT
1 TCTGATAGCTAT
85032 TCTGATAGCTAT
1 TCTGATAGCTAT
85044 T
1 T
85045 TCGGCTATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (12 bp):
TCTGATAGCTAT
Left flanking sequence: Indices 84520 -- 85019
ACTTGTTGTACCCCGTTGGCTTCCTTTTGGGGACTCCCCGTGGCGAGATCTTGAAGGTGACCAAG
CTTATTGCCACCAAGTTCATCCAGAACGAGTTTGTGGCCTACGACTTGTTGTTGCACGACGACGA
GTTCAAGGGGTTGTCTGCCCGGTCGTTGTTGCTTGCGACCTTTGCCTGCTGTGGGTTCGCCAACT
TTGGCTCCATGGGTATCACCTTGGGTGTCTTGAACACCATTTCCAAGGGCCGTGGGCTGGACATT
GCTTCCGGTATTGGGTCTGCGCTTATTACCGGTGGTATTGCCACGTTGATGGCGGCTGCCGTTGC
CGGTATGGTTATCCACGACTTGGATGGCTACGTTATGACTCAAGGGTAATTCTCGGTTCACTTAA
TATAGAATATGGTTTACAAGAGTAGGAGTTCCGGGGCGATGGCACTTTCTCTGATGGCTTAGGGT
AATCTGGCTGTCTACTCCAGATTTCTTGGCTTATCAACCAATATC
Right flanking sequence: Indices 85045 -- 85544
TCGGCTATCTCTAATCAGTATCCGTGAGATTAGATGAGTCTATCTAATCTCTGTAATCTCTCAAG
TAGAAGGGTAGGGATCACGTGATGTAAAAAGAGTCTTGGGTCGGTAAGTCAATTGGTAAAGTCAG
GTCAAGTCAATTGGCAATTGGGTAGAACCGCGTAAAACACCCACCAGCCAGGCTACTCTACCAGT
ATTCTGTGAACTGTCACCGTGTAGGTAAACAACTTTAAACAGAGTCGTTTTCGAAGTCAGGAACG
GCTTAGAATCACCTTCCGTGTTTTTCACTCTCTACTCCATTTCCACATAACGCACGCGTGCGGCT
CCCCTTCCAACACCCCAGGGATGTCCACGCCCAGCCTGAGCTTGGCCAAGTATGCCTTCAACATC
TACGGCAACATCCATCCCCACGACCCGCTGCCGCCGCTGGCTCGGCCACGCAACCCGGGGCTCCA
CTTCCACTGCGAGCGCGAGGTGACGTCGCTCTCGCAAATCTCCCG
Found at i:88738 original size:21 final size:21
Alignment explanation
Indices: 88713--88795 Score: 157
Period size: 21 Copynumber: 4.0 Consensus size: 21
88703 AAAGATAGAT
88713 ATGAGCCATAGGCTGGATGAA
1 ATGAGCCATAGGCTGGATGAA
88734 ATGAGCCATAGGCTGGATGAA
1 ATGAGCCATAGGCTGGATGAA
88755 ATGAGCCATAGGCTGGATGAA
1 ATGAGCCATAGGCTGGATGAA
*
88776 ATGAGCCATAGGCTGAATGA
1 ATGAGCCATAGGCTGGATGA
88796 TAGATATGAG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 61 1.00
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (21 bp):
ATGAGCCATAGGCTGGATGAA
Left flanking sequence: Indices 88213 -- 88712
GTGGTGGCGGCGTCGCTCGTGCTTCTCTTCTACCCGGTATTCCCCGCGGCGATCCGCCGGGACGA
GGCCCTCAACATCCTTGCGCTCTACGTGGAGCAGCTCCGGCGCCACACCCTCTTTGTCGAGGCGC
TGTATGTGGTGAAGCTCGCCCCGCCCGAGTTGGCGGAGTCGCTCGCCAAGGTGATGCCCCACGAC
ACCAGTCTCCGGTTCTTTTGCGAGCACTGCGGGAAGGTGTTGATCAACGAGCGGCTGAAGGCGCG
GGTGAACGAGGGCGCCCCCGTGGACTTTGGGTTCTGGTACTGTGACGCGTGCTCGCGGCGCCAGC
TGAACTGTATTTACTGTTGCGAGCCGTGTAAGGGGATGGCGGTGGTGGTGTCGTTGAAGTGCGGG
CACCGCGGGCACCCACGGTGTGTGAAGGAGTGGTTTGTCACCGGGGGGAACGTGGACTGTCCCGG
GGGCTGCGACTTTGCGGTGGCATAGAAGCATAGTAAAAGATAGAT
Right flanking sequence: Indices 88796 -- 89295
TAGATATGAGCATAGTCTAGAAGAAGGATAGATATGAAGCATAGTTATAGCATGATAGATGAAGC
ATAGGAAATGATAGATATGAGCATAGTTTAGTAGAGTAAGAGATATGAAGCATGGTCTGGTTGAA
TGATACAGTGGATGGAATGTAACTGTTACGTTGAACATACGAGCATGATCGCCGTATTATATGGG
CAATTGTTAGTTCGATTATAATTGAGGTGTTCGAATACAATTGAGGTTATTAGAATACAATTGAG
GTTATTCGGTTCCAATTGAGTTATGCGTACGTATGGGCTGAGCATTGTGCCATCCAATTGGCAGA
GTGTCTTCGCTTCGAGTGGGCTCCAGGCTTTACGTTTATTAAAAAGCAATTGAGCCATCTGATTT
TGACAGCGACTATTGTATTCTGAACCGTTGTCTCAGCACGGACGCGTGTTTACGTGATATTTCGG
AACATCCGCATTGGGCTCGTACCGAAAAACTCCGCAGGATGCCCG
Found at i:89024 original size:19 final size:19
Alignment explanation
Indices: 89000--89057 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
88990 GCAATTGTTA
* *
89000 GTTCGATTATAATTGAGGT
1 GTTCGAATACAATTGAGGT
89019 GTTCGAATACAATTGAGGTT
1 GTTCGAATACAATTGAGG-T
* *
89039 ATTAGAATACAATTGAGGT
1 GTTCGAATACAATTGAGGT
89058 TATTCGGTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (19 bp):
GTTCGAATACAATTGAGGT
Left flanking sequence: Indices 88500 -- 88999
TGGGTTCTGGTACTGTGACGCGTGCTCGCGGCGCCAGCTGAACTGTATTTACTGTTGCGAGCCGT
GTAAGGGGATGGCGGTGGTGGTGTCGTTGAAGTGCGGGCACCGCGGGCACCCACGGTGTGTGAAG
GAGTGGTTTGTCACCGGGGGGAACGTGGACTGTCCCGGGGGCTGCGACTTTGCGGTGGCATAGAA
GCATAGTAAAAGATAGATATGAGCCATAGGCTGGATGAAATGAGCCATAGGCTGGATGAAATGAG
CCATAGGCTGGATGAAATGAGCCATAGGCTGAATGATAGATATGAGCATAGTCTAGAAGAAGGAT
AGATATGAAGCATAGTTATAGCATGATAGATGAAGCATAGGAAATGATAGATATGAGCATAGTTT
AGTAGAGTAAGAGATATGAAGCATGGTCTGGTTGAATGATACAGTGGATGGAATGTAACTGTTAC
GTTGAACATACGAGCATGATCGCCGTATTATATGGGCAATTGTTA
Right flanking sequence: Indices 89058 -- 89557
TATTCGGTTCCAATTGAGTTATGCGTACGTATGGGCTGAGCATTGTGCCATCCAATTGGCAGAGT
GTCTTCGCTTCGAGTGGGCTCCAGGCTTTACGTTTATTAAAAAGCAATTGAGCCATCTGATTTTG
ACAGCGACTATTGTATTCTGAACCGTTGTCTCAGCACGGACGCGTGTTTACGTGATATTTCGGAA
CATCCGCATTGGGCTCGTACCGAAAAACTCCGCAGGATGCCCGATCATTACGTAGGGGTGCGTCG
TTGTGCCTAACGGTACTACCATCGACCCTACCCCATGATCCGGCGGGTCTCCAGCAACACCTGGT
CCCTCGAAAGATTTTTTCTCTCCAAAACTACTTTTTTGTGACGATTCCCACGTTCTCTCACATTA
GAGAATATTCGCTCGCATGGGCCCTGTCTCGGACACGTCCCAAAGGGGACAACGTGCGAAAAGGT
GGACCAATACAGCTAGATCCGAGACCAATTCCCTTACGGTGGCGT
Found at i:89075 original size:20 final size:20
Alignment explanation
Indices: 89010--89061 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
89000 GTTCGATTAT
* *
89010 AATTGAGG-TGTTCGAATAC
1 AATTGAGGTTATTAGAATAC
89029 AATTGAGGTTATTAGAATAC
1 AATTGAGGTTATTAGAATAC
89049 AATTGAGGTTATT
1 AATTGAGGTTATT
89062 CGGTTCCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 8 0.27
20 22 0.73
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.37
Consensus pattern (20 bp):
AATTGAGGTTATTAGAATAC
Left flanking sequence: Indices 88510 -- 89009
TACTGTGACGCGTGCTCGCGGCGCCAGCTGAACTGTATTTACTGTTGCGAGCCGTGTAAGGGGAT
GGCGGTGGTGGTGTCGTTGAAGTGCGGGCACCGCGGGCACCCACGGTGTGTGAAGGAGTGGTTTG
TCACCGGGGGGAACGTGGACTGTCCCGGGGGCTGCGACTTTGCGGTGGCATAGAAGCATAGTAAA
AGATAGATATGAGCCATAGGCTGGATGAAATGAGCCATAGGCTGGATGAAATGAGCCATAGGCTG
GATGAAATGAGCCATAGGCTGAATGATAGATATGAGCATAGTCTAGAAGAAGGATAGATATGAAG
CATAGTTATAGCATGATAGATGAAGCATAGGAAATGATAGATATGAGCATAGTTTAGTAGAGTAA
GAGATATGAAGCATGGTCTGGTTGAATGATACAGTGGATGGAATGTAACTGTTACGTTGAACATA
CGAGCATGATCGCCGTATTATATGGGCAATTGTTAGTTCGATTAT
Right flanking sequence: Indices 89062 -- 89561
CGGTTCCAATTGAGTTATGCGTACGTATGGGCTGAGCATTGTGCCATCCAATTGGCAGAGTGTCT
TCGCTTCGAGTGGGCTCCAGGCTTTACGTTTATTAAAAAGCAATTGAGCCATCTGATTTTGACAG
CGACTATTGTATTCTGAACCGTTGTCTCAGCACGGACGCGTGTTTACGTGATATTTCGGAACATC
CGCATTGGGCTCGTACCGAAAAACTCCGCAGGATGCCCGATCATTACGTAGGGGTGCGTCGTTGT
GCCTAACGGTACTACCATCGACCCTACCCCATGATCCGGCGGGTCTCCAGCAACACCTGGTCCCT
CGAAAGATTTTTTCTCTCCAAAACTACTTTTTTGTGACGATTCCCACGTTCTCTCACATTAGAGA
ATATTCGCTCGCATGGGCCCTGTCTCGGACACGTCCCAAAGGGGACAACGTGCGAAAAGGTGGAC
CAATACAGCTAGATCCGAGACCAATTCCCTTACGGTGGCGTCCTA
Found at i:91482 original size:23 final size:21
Alignment explanation
Indices: 91456--91508 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 21
91446 GCACTTACAG
91456 ACCACCACTCCCCACATCTACCA
1 ACCACCACTCCCCAC--CTACCA
*
91479 ACCACCACT--CCACCTACTA
1 ACCACCACTCCCCACCTACCA
91498 ACCACCACTCC
1 ACCACCACTCC
91509 ATCTACCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 14 0.52
21 4 0.15
23 9 0.33
ACGTcount: A:0.30, C:0.57, G:0.00, T:0.13
Consensus pattern (21 bp):
ACCACCACTCCCCACCTACCA
Left flanking sequence: Indices 90956 -- 91455
TGTGATACATCACAATCACCATGAAGTTCGTTTCCATCATTGCCGCCTTGACCGCCACCACTCTT
GCCGAGAACGTCGTCCAGTCGTACGTTCTCAAGGAGGGCGAAGTTGCCTACAAGGCCCAGAACGA
CAAGGGCGAGACCGCCATCGTTATTGTGTCCGCTGCTGAGGACCAGGACGGCGACAAGGCCAAGC
GCTGGTCTTGGTTGGACTGGAGAATGTTCGAGCCCATCACTAAGTAAAGAGCTAGCTAATAAATA
CGGCATTGCCAACTATGACTGTAGACGGGTTGGAGTGATTGGATTCATTCCAGTACACCAAGCAC
AAGAAAGCCATGGTTTACGCCCATAAAGTACAAGAAAACCATAGTTTCACCCGTGTAGACAAACG
TTTCAATGGCCTGAAAAGAAATCAGGCTCTGTTAAAATGGAATCAAGCTCTGAACTACTGAAATA
CCAGTCCGCCAAACACCCACCAACTACCACCCCGCGCACTTACAG
Right flanking sequence: Indices 91509 -- 92008
ATCTACCATTCAAATTAATCGTAAATTACGCTTACAATTTTACACATTAAGATTAGTACAACAAC
GAGGCACCCACGGCAACGAAACCAGCGACAATGGCGGCGTAGGACATCGACAAACCGGCAGCACC
GTTGTCCTTACCGTCCTTGCCGTCCTTGCCGTCCTTGCCGTCACCAGACTCGGTGGAAGAGTCAG
ACTGGATGGAGTCGGCGTCGTCCTGCGAAACGCCCAGCTTGTTACCAGACTTGGCCAGCGAAGAA
GAGGTGGCCACGTCCTTGCCCTTGCAGGCAAACTTGTCACCCTTGACAATCCCGTCCGAGTTCAA
CTTCTTGAAGTCCTCGCACTTCAAGTCACCGTCCTCCGAGAGCAAAGTGAAGCCACCAGCCACTC
TCTTCAACTCGGGGAACGAACCGTTGTTGAACGAACCGTTGATGTTGACGGAACCGCCAATCTGG
GTCAAGTTGGGGAAACCACCAAAGTCCTCAAGCTTGTCGTTGTCA
Found at i:91495 original size:19 final size:19
Alignment explanation
Indices: 91473--91516 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
91463 CTCCCCACAT
91473 CTACCAACCACCACTCCAC
1 CTACCAACCACCACTCCAC
* *
91492 CTACTAACCACCACTCCAT
1 CTACCAACCACCACTCCAC
91511 CTACCA
1 CTACCA
91517 TTCAAATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (19 bp):
CTACCAACCACCACTCCAC
Left flanking sequence: Indices 90973 -- 91472
ACCATGAAGTTCGTTTCCATCATTGCCGCCTTGACCGCCACCACTCTTGCCGAGAACGTCGTCCA
GTCGTACGTTCTCAAGGAGGGCGAAGTTGCCTACAAGGCCCAGAACGACAAGGGCGAGACCGCCA
TCGTTATTGTGTCCGCTGCTGAGGACCAGGACGGCGACAAGGCCAAGCGCTGGTCTTGGTTGGAC
TGGAGAATGTTCGAGCCCATCACTAAGTAAAGAGCTAGCTAATAAATACGGCATTGCCAACTATG
ACTGTAGACGGGTTGGAGTGATTGGATTCATTCCAGTACACCAAGCACAAGAAAGCCATGGTTTA
CGCCCATAAAGTACAAGAAAACCATAGTTTCACCCGTGTAGACAAACGTTTCAATGGCCTGAAAA
GAAATCAGGCTCTGTTAAAATGGAATCAAGCTCTGAACTACTGAAATACCAGTCCGCCAAACACC
CACCAACTACCACCCCGCGCACTTACAGACCACCACTCCCCACAT
Right flanking sequence: Indices 91517 -- 92016
TTCAAATTAATCGTAAATTACGCTTACAATTTTACACATTAAGATTAGTACAACAACGAGGCACC
CACGGCAACGAAACCAGCGACAATGGCGGCGTAGGACATCGACAAACCGGCAGCACCGTTGTCCT
TACCGTCCTTGCCGTCCTTGCCGTCCTTGCCGTCACCAGACTCGGTGGAAGAGTCAGACTGGATG
GAGTCGGCGTCGTCCTGCGAAACGCCCAGCTTGTTACCAGACTTGGCCAGCGAAGAAGAGGTGGC
CACGTCCTTGCCCTTGCAGGCAAACTTGTCACCCTTGACAATCCCGTCCGAGTTCAACTTCTTGA
AGTCCTCGCACTTCAAGTCACCGTCCTCCGAGAGCAAAGTGAAGCCACCAGCCACTCTCTTCAAC
TCGGGGAACGAACCGTTGTTGAACGAACCGTTGATGTTGACGGAACCGCCAATCTGGGTCAAGTT
GGGGAAACCACCAAAGTCCTCAAGCTTGTCGTTGTCACCAATGTT
Found at i:91654 original size:9 final size:9
Alignment explanation
Indices: 91642--91680 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
91632 CAGCACCGTT
*
91642 GTCCTTACC
1 GTCCTTGCC
91651 GTCCTTGCC
1 GTCCTTGCC
91660 GTCCTTGCC
1 GTCCTTGCC
91669 GTCCTTGCC
1 GTCCTTGCC
91678 GTC
1 GTC
91681 ACCAGACTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.03, C:0.44, G:0.21, T:0.33
Consensus pattern (9 bp):
GTCCTTGCC
Left flanking sequence: Indices 91142 -- 91641
AGGCCAAGCGCTGGTCTTGGTTGGACTGGAGAATGTTCGAGCCCATCACTAAGTAAAGAGCTAGC
TAATAAATACGGCATTGCCAACTATGACTGTAGACGGGTTGGAGTGATTGGATTCATTCCAGTAC
ACCAAGCACAAGAAAGCCATGGTTTACGCCCATAAAGTACAAGAAAACCATAGTTTCACCCGTGT
AGACAAACGTTTCAATGGCCTGAAAAGAAATCAGGCTCTGTTAAAATGGAATCAAGCTCTGAACT
ACTGAAATACCAGTCCGCCAAACACCCACCAACTACCACCCCGCGCACTTACAGACCACCACTCC
CCACATCTACCAACCACCACTCCACCTACTAACCACCACTCCATCTACCATTCAAATTAATCGTA
AATTACGCTTACAATTTTACACATTAAGATTAGTACAACAACGAGGCACCCACGGCAACGAAACC
AGCGACAATGGCGGCGTAGGACATCGACAAACCGGCAGCACCGTT
Right flanking sequence: Indices 91681 -- 92180
ACCAGACTCGGTGGAAGAGTCAGACTGGATGGAGTCGGCGTCGTCCTGCGAAACGCCCAGCTTGT
TACCAGACTTGGCCAGCGAAGAAGAGGTGGCCACGTCCTTGCCCTTGCAGGCAAACTTGTCACCC
TTGACAATCCCGTCCGAGTTCAACTTCTTGAAGTCCTCGCACTTCAAGTCACCGTCCTCCGAGAG
CAAAGTGAAGCCACCAGCCACTCTCTTCAACTCGGGGAACGAACCGTTGTTGAACGAACCGTTGA
TGTTGACGGAACCGCCAATCTGGGTCAAGTTGGGGAAACCACCAAAGTCCTCAAGCTTGTCGTTG
TCACCAATGTTCAACGCACCGCCAATCGAGCCCAAGAGGGGGAAGTCGAGCCCGTCCAACTCGTC
GTTCTTCAGCAACTCAAGCGAGTTCTTGACCGACGACAACTGGGGGAAGTCGACGTCCTTGACCG
AGGTCTCGGTGATGGCCAAAGTGCCGTTGACCGAGGTCAAGTTCT
Found at i:92878 original size:13 final size:13
Alignment explanation
Indices: 92860--92890 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
92850 GACGGGGAGT
92860 AGAGTCACGGTGA
1 AGAGTCACGGTGA
92873 AGAGTCACGGTGA
1 AGAGTCACGGTGA
92886 AGAGT
1 AGAGT
92891 GAAGATGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.13, G:0.39, T:0.16
Consensus pattern (13 bp):
AGAGTCACGGTGA
Left flanking sequence: Indices 92360 -- 92859
AACACGTTGATGCCCTCGAGCGACGACAAACCGGTGTCGGAGATGATCACCTTGTCGGCGGTGGT
CAAGCCAGAGGACAAGTCCACCTTCGAAAGAGCGGGAAGCGCGTTCAACTGGAGCGAGCCCACAG
TGGAAAGCTTGGCCACGTTGATGTTGGACAAGATGGTACCGTTGAGGACAATGAAGTCCTTGGAC
ACAACCTGCAAGTCGGGGGCGTTGATGTTCTTGGCCTGGGGCACGTTCTCGATGTCCAAGTTACC
GTAGATGGCCTGGACACCGGTCAACTCGATGTTGTCCAACTTGTCGCCCTTGATGGTGACGTCAC
CGACCGCGGTGGCACACGCAGCCACCAGCTGCACCTGCTCGGAGGCGGTGGCGGTGAACTTGTCG
AACGAACAAGCGGAGGCCACCGACGAGGGGGCGGCGGTAGCGGCAATCAAAGTGGAGTCTGGAAG
TTAGTATGGAATATAGGAATTACGTGGCTGGATGAGACGGGGAGT
Right flanking sequence: Indices 92891 -- 93390
GAAGATGAGTAGGGTGTGTGAATGGTTGGACTGTGAAGATGGATTGGATGGTCGGATTGATGGTT
GTAGCGATGATTTTTGCAATGATTTGCAATAATATGCAATGATTTGCAATGATTGGCGTTAACTT
TTCAATGGTTTTTGCAATCATTTTTGCGACCATTGCAATCATTTGCAATCATTTGTAATCATATT
TGCCACGATGGTGATTGGTGGAGTGGGGCCCTCATTGGTACCGGTCATCGCTGGATTTCCACAAA
TCCCGCATTGGCGATTCTCGGCTCTGACGGCTACTCCGCCCGTTCCGTTTCTTTTCGTGCGTCGC
ATTTCAGGCGTATTTGTTTACCTTGTTTGTTTGTTTGTTTTGGTCCATGTCGGCTATTTCCCCCC
TGTTTCAGGTCCTGGGTTCGAATCTCGGGAGATGAATCTCGCGCGTCATCTGCTTTCCCGTTTGG
GTAAGCCAGCCAATCACATCTCCATAAACGGGGGAAAATCTCGGA
Found at i:92983 original size:10 final size:10
Alignment explanation
Indices: 92968--93009 Score: 66
Period size: 10 Copynumber: 4.2 Consensus size: 10
92958 AGCGATGATT
92968 TTTGCAATGA
1 TTTGCAATGA
*
92978 TTTGCAATAA
1 TTTGCAATGA
*
92988 TATGCAATGA
1 TTTGCAATGA
92998 TTTGCAATGA
1 TTTGCAATGA
93008 TT
1 TT
93010 GGCGTTAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (10 bp):
TTTGCAATGA
Left flanking sequence: Indices 92468 -- 92967
TTCAACTGGAGCGAGCCCACAGTGGAAAGCTTGGCCACGTTGATGTTGGACAAGATGGTACCGTT
GAGGACAATGAAGTCCTTGGACACAACCTGCAAGTCGGGGGCGTTGATGTTCTTGGCCTGGGGCA
CGTTCTCGATGTCCAAGTTACCGTAGATGGCCTGGACACCGGTCAACTCGATGTTGTCCAACTTG
TCGCCCTTGATGGTGACGTCACCGACCGCGGTGGCACACGCAGCCACCAGCTGCACCTGCTCGGA
GGCGGTGGCGGTGAACTTGTCGAACGAACAAGCGGAGGCCACCGACGAGGGGGCGGCGGTAGCGG
CAATCAAAGTGGAGTCTGGAAGTTAGTATGGAATATAGGAATTACGTGGCTGGATGAGACGGGGA
GTAGAGTCACGGTGAAGAGTCACGGTGAAGAGTGAAGATGAGTAGGGTGTGTGAATGGTTGGACT
GTGAAGATGGATTGGATGGTCGGATTGATGGTTGTAGCGATGATT
Right flanking sequence: Indices 93010 -- 93509
GGCGTTAACTTTTCAATGGTTTTTGCAATCATTTTTGCGACCATTGCAATCATTTGCAATCATTT
GTAATCATATTTGCCACGATGGTGATTGGTGGAGTGGGGCCCTCATTGGTACCGGTCATCGCTGG
ATTTCCACAAATCCCGCATTGGCGATTCTCGGCTCTGACGGCTACTCCGCCCGTTCCGTTTCTTT
TCGTGCGTCGCATTTCAGGCGTATTTGTTTACCTTGTTTGTTTGTTTGTTTTGGTCCATGTCGGC
TATTTCCCCCCTGTTTCAGGTCCTGGGTTCGAATCTCGGGAGATGAATCTCGCGCGTCATCTGCT
TTCCCGTTTGGGTAAGCCAGCCAATCACATCTCCATAAACGGGGGAAAATCTCGGAAACGTTCGG
AACGCGCACGACAGACGCCCACCAAACACCACAAACACGACAAACACCGCCAACAAACCACCATC
AAACCACCAAAAATCACATCACTGCGCCCTCTCTTCCCTCTTTTC
Found at i:93068 original size:10 final size:10
Alignment explanation
Indices: 93031--93082 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
93021 TTCAATGGTT
93031 TTTGCAATCA
1 TTTGCAATCA
* *
93041 TTTTTGCGACCA
1 --TTTGCAATCA
93053 -TTGCAATCA
1 TTTGCAATCA
93062 TTTGCAATCA
1 TTTGCAATCA
*
93072 TTTGTAATCA
1 TTTGCAATCA
93082 T
1 T
93083 ATTTGCCACG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 7 0.21
10 19 0.56
12 8 0.24
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (10 bp):
TTTGCAATCA
Left flanking sequence: Indices 92531 -- 93030
TTGAGGACAATGAAGTCCTTGGACACAACCTGCAAGTCGGGGGCGTTGATGTTCTTGGCCTGGGG
CACGTTCTCGATGTCCAAGTTACCGTAGATGGCCTGGACACCGGTCAACTCGATGTTGTCCAACT
TGTCGCCCTTGATGGTGACGTCACCGACCGCGGTGGCACACGCAGCCACCAGCTGCACCTGCTCG
GAGGCGGTGGCGGTGAACTTGTCGAACGAACAAGCGGAGGCCACCGACGAGGGGGCGGCGGTAGC
GGCAATCAAAGTGGAGTCTGGAAGTTAGTATGGAATATAGGAATTACGTGGCTGGATGAGACGGG
GAGTAGAGTCACGGTGAAGAGTCACGGTGAAGAGTGAAGATGAGTAGGGTGTGTGAATGGTTGGA
CTGTGAAGATGGATTGGATGGTCGGATTGATGGTTGTAGCGATGATTTTTGCAATGATTTGCAAT
AATATGCAATGATTTGCAATGATTGGCGTTAACTTTTCAATGGTT
Right flanking sequence: Indices 93083 -- 93582
ATTTGCCACGATGGTGATTGGTGGAGTGGGGCCCTCATTGGTACCGGTCATCGCTGGATTTCCAC
AAATCCCGCATTGGCGATTCTCGGCTCTGACGGCTACTCCGCCCGTTCCGTTTCTTTTCGTGCGT
CGCATTTCAGGCGTATTTGTTTACCTTGTTTGTTTGTTTGTTTTGGTCCATGTCGGCTATTTCCC
CCCTGTTTCAGGTCCTGGGTTCGAATCTCGGGAGATGAATCTCGCGCGTCATCTGCTTTCCCGTT
TGGGTAAGCCAGCCAATCACATCTCCATAAACGGGGGAAAATCTCGGAAACGTTCGGAACGCGCA
CGACAGACGCCCACCAAACACCACAAACACGACAAACACCGCCAACAAACCACCATCAAACCACC
AAAAATCACATCACTGCGCCCTCTCTTCCCTCTTTTCTTTTGTCCCAATCACCGAATTGCGAGCC
CGCCTCCGGTTTTGATCGTTTAGCCGGTTGCGAGCCCCGTTCAGG
Found at i:93647 original size:16 final size:16
Alignment explanation
Indices: 93625--93661 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
93615 CCATCCAGGC
*
93625 CACACAGACACCCACA
1 CACACAGACACACACA
*
93641 GACACAGACACACACA
1 CACACAGACACACACA
93657 CACAC
1 CACAC
93662 CACCCAGACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.46, G:0.08, T:0.00
Consensus pattern (16 bp):
CACACAGACACACACA
Left flanking sequence: Indices 93125 -- 93624
ACCGGTCATCGCTGGATTTCCACAAATCCCGCATTGGCGATTCTCGGCTCTGACGGCTACTCCGC
CCGTTCCGTTTCTTTTCGTGCGTCGCATTTCAGGCGTATTTGTTTACCTTGTTTGTTTGTTTGTT
TTGGTCCATGTCGGCTATTTCCCCCCTGTTTCAGGTCCTGGGTTCGAATCTCGGGAGATGAATCT
CGCGCGTCATCTGCTTTCCCGTTTGGGTAAGCCAGCCAATCACATCTCCATAAACGGGGGAAAAT
CTCGGAAACGTTCGGAACGCGCACGACAGACGCCCACCAAACACCACAAACACGACAAACACCGC
CAACAAACCACCATCAAACCACCAAAAATCACATCACTGCGCCCTCTCTTCCCTCTTTTCTTTTG
TCCCAATCACCGAATTGCGAGCCCGCCTCCGGTTTTGATCGTTTAGCCGGTTGCGAGCCCCGTTC
AGGGGAACTCGTCAAGGTGGGAGCCCGCCAGCTGGCCATCCAGGC
Right flanking sequence: Indices 93662 -- 94161
CACCCAGACACACAAAACACTCGCCATTCTCAGTCCAAACCGCGGACACGCAGGCGGTTGCATCA
GGTGATCCCGGCGACACCCGGCCAGGGTCCCGTCGGTCAACGGGAAGCCACGGGCAGCCCCCTGC
GAGGGCTGCGGGGAGTATACTCACTGTTAGCGGCGGTGGCGGCACCGGTCACGGCGGCCACGGCA
ATGGCTTTCTTCAATTGCATCGTAGGGGTATATGGGGAAACAGCGAAAATGCCGCTGTTAAATTT
ATCACACAATACCCGTGTGCCTGCACACAGCCGGGAGCAAACTATAAGCAGATAATTTTAAACCA
TGCACTGGGCTGTGGTGGCGGGGAAGGCGGGTATCGGGGAAAAAGCGGGCGAAACGGTGATCTCG
GGTCGCCAGGGGCCCGTGGCAACCGCCCGGTGCGGTGTGAACCGGTTTTTTCACGGCTTTTCCCT
GGAAGAGGCCCGGTTTGCCCAGCCCCAGTGGTGCGTTTCCCGATG
Found at i:94478 original size:14 final size:14
Alignment explanation
Indices: 94459--94485 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
94449 GGACGTAGGG
94459 CGGACGTAGAGCCA
1 CGGACGTAGAGCCA
94473 CGGACGTAGAGCC
1 CGGACGTAGAGCC
94486 CGTGGAGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.30, G:0.37, T:0.07
Consensus pattern (14 bp):
CGGACGTAGAGCCA
Left flanking sequence: Indices 93959 -- 94458
CAAACTATAAGCAGATAATTTTAAACCATGCACTGGGCTGTGGTGGCGGGGAAGGCGGGTATCGG
GGAAAAAGCGGGCGAAACGGTGATCTCGGGTCGCCAGGGGCCCGTGGCAACCGCCCGGTGCGGTG
TGAACCGGTTTTTTCACGGCTTTTCCCTGGAAGAGGCCCGGTTTGCCCAGCCCCAGTGGTGCGTT
TCCCGATGAAACCATGCATGTCAATAAACAAATCTCCGTATTTGGTAACCGCACCAGCGGACAAT
TGGCGAAAGGAGCCCGAGGGCCAGGACGGCATGCGCCCTGTGCAGCCAGCCATGTGGTGTGACAT
AAGGGTTTTGGAGCGTCAGGCGATCCGATCCTGTGATAGTGGCGGGGAGGGGCCGGGGATGGGCC
GGATCTATTTTGGGAGGGGTCGGGCAAGGCGGGACACTACCTGGTGAACTCCTGTGCGGGAGGGG
TAGCGAGGCTGACGGCATGGCTAACACCGAGCTACGGACGTAGGG
Right flanking sequence: Indices 94486 -- 94985
CGTGGAGTTTGGGGCACGGTTGGGGATGGGGGTGGTGGTGGGCCCGGTTGAGCTTGGACGGTTGC
GAGCATCGGCCCGGTTGAGCACTGGACGGTTGCGAGCGTGGGTTTTTCACTGGCAGCCCTGGAGT
AGCCCTGTGGGGGCCGTCTACTGCCGAGCCAGCGGGTCTCCGAAACAGCACTGGTCCTCAGACGG
CGCTAATGGCCGGGTTGTTGCCGGATTACACCCGTTCCGGCCGCGGGCCCCTTTGTTGTCTCTTC
TATTTTCTGCCGTCAGTTTTTCCGACCGTCATTTCTGAATCGGTGCTGCCCCGGTGCTTTTGCCG
TTGTTCGCCCACCGGGCCATTGTCTCTGCTGGCCACGCACTTCGCTCGAGTTGTCACTTGTCCTG
TGTGCCTTCTTCTCTGGCGTGTGCATTCTTCTCGTGACCTGTGCCTTCTTCTCGTAGCGGGTGCC
TCTTCTCCACCTGCCCTCTCCTCCATGATCTGCCCCTTATGACTA
Found at i:94567 original size:32 final size:33
Alignment explanation
Indices: 94526--94587 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
94516 GGTGGTGGTG
*
94526 GGCCCGGTTGAGC-TTGGACGGTTGCGAGCATC
1 GGCCCGGTTGAGCACTGGACGGTTGCGAGCATC
94558 GGCCCGGTTGAGCACTGGACGGTTGCGAGC
1 GGCCCGGTTGAGCACTGGACGGTTGCGAGC
94588 GTGGGTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.13, C:0.26, G:0.42, T:0.19
Consensus pattern (33 bp):
GGCCCGGTTGAGCACTGGACGGTTGCGAGCATC
Left flanking sequence: Indices 94026 -- 94525
AAAAAGCGGGCGAAACGGTGATCTCGGGTCGCCAGGGGCCCGTGGCAACCGCCCGGTGCGGTGTG
AACCGGTTTTTTCACGGCTTTTCCCTGGAAGAGGCCCGGTTTGCCCAGCCCCAGTGGTGCGTTTC
CCGATGAAACCATGCATGTCAATAAACAAATCTCCGTATTTGGTAACCGCACCAGCGGACAATTG
GCGAAAGGAGCCCGAGGGCCAGGACGGCATGCGCCCTGTGCAGCCAGCCATGTGGTGTGACATAA
GGGTTTTGGAGCGTCAGGCGATCCGATCCTGTGATAGTGGCGGGGAGGGGCCGGGGATGGGCCGG
ATCTATTTTGGGAGGGGTCGGGCAAGGCGGGACACTACCTGGTGAACTCCTGTGCGGGAGGGGTA
GCGAGGCTGACGGCATGGCTAACACCGAGCTACGGACGTAGGGCGGACGTAGAGCCACGGACGTA
GAGCCCGTGGAGTTTGGGGCACGGTTGGGGATGGGGGTGGTGGTG
Right flanking sequence: Indices 94588 -- 95087
GTGGGTTTTTCACTGGCAGCCCTGGAGTAGCCCTGTGGGGGCCGTCTACTGCCGAGCCAGCGGGT
CTCCGAAACAGCACTGGTCCTCAGACGGCGCTAATGGCCGGGTTGTTGCCGGATTACACCCGTTC
CGGCCGCGGGCCCCTTTGTTGTCTCTTCTATTTTCTGCCGTCAGTTTTTCCGACCGTCATTTCTG
AATCGGTGCTGCCCCGGTGCTTTTGCCGTTGTTCGCCCACCGGGCCATTGTCTCTGCTGGCCACG
CACTTCGCTCGAGTTGTCACTTGTCCTGTGTGCCTTCTTCTCTGGCGTGTGCATTCTTCTCGTGA
CCTGTGCCTTCTTCTCGTAGCGGGTGCCTCTTCTCCACCTGCCCTCTCCTCCATGATCTGCCCCT
TATGACTATGGACTCAGCCATGACTCGCCATGGCGCCACAATGGCATCGGCACGGAGTCTGTCAC
CCCTATCAACCTCGGATCCGACCCTGCCACCTGGACCACCTAAAA
Found at i:94899 original size:19 final size:20
Alignment explanation
Indices: 94875--94947 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
94865 CACTTGTCCT
94875 GTGTGCCTTCTTCTC-TGGC
1 GTGTGCCTTCTTCTCGTGGC
* *
94894 GTGTGCATTCTTCTCGTGAC
1 GTGTGCCTTCTTCTCGTGGC
* *
94914 CTGTGCCTTCTTCTCGTAGC
1 GTGTGCCTTCTTCTCGTGGC
*
94934 GGGTGCC-TCTTCTC
1 GTGTGCCTTCTTCTC
94948 CACCTGCCCT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
19 21 0.47
20 24 0.53
ACGTcount: A:0.04, C:0.32, G:0.25, T:0.40
Consensus pattern (20 bp):
GTGTGCCTTCTTCTCGTGGC
Left flanking sequence: Indices 94375 -- 94874
AGGCGGGACACTACCTGGTGAACTCCTGTGCGGGAGGGGTAGCGAGGCTGACGGCATGGCTAACA
CCGAGCTACGGACGTAGGGCGGACGTAGAGCCACGGACGTAGAGCCCGTGGAGTTTGGGGCACGG
TTGGGGATGGGGGTGGTGGTGGGCCCGGTTGAGCTTGGACGGTTGCGAGCATCGGCCCGGTTGAG
CACTGGACGGTTGCGAGCGTGGGTTTTTCACTGGCAGCCCTGGAGTAGCCCTGTGGGGGCCGTCT
ACTGCCGAGCCAGCGGGTCTCCGAAACAGCACTGGTCCTCAGACGGCGCTAATGGCCGGGTTGTT
GCCGGATTACACCCGTTCCGGCCGCGGGCCCCTTTGTTGTCTCTTCTATTTTCTGCCGTCAGTTT
TTCCGACCGTCATTTCTGAATCGGTGCTGCCCCGGTGCTTTTGCCGTTGTTCGCCCACCGGGCCA
TTGTCTCTGCTGGCCACGCACTTCGCTCGAGTTGTCACTTGTCCT
Right flanking sequence: Indices 94948 -- 95447
CACCTGCCCTCTCCTCCATGATCTGCCCCTTATGACTATGGACTCAGCCATGACTCGCCATGGCG
CCACAATGGCATCGGCACGGAGTCTGTCACCCCTATCAACCTCGGATCCGACCCTGCCACCTGGA
CCACCTAAAATAAACCCTATATACCTCTAGCTACACCTACCACTCACCTACTACCACCACCTACT
ACACCACGTAGCACCCCGGCGCACCTCCTCCGTCGCTCTCCTCCCAACCTCTCCTCGCATCGCTC
CTCCTCGTAACCGTCGCACCGTCGGGCACCGGAGAACCCCCGCCGCCGCCGAAGTAAAACACAAA
CACTAAGCCAAGCCCGGGTATCGCCGGAACACCTGGGACTCCGAAAGTGAGCCGACCCACCCCCC
AGAGCCCGGTCACGCCGCCGCTGCACCGTCGCCACCCCACACAACAATGGCGGTGCCCGCCGTCC
GCTTCGTACATCACCCAAGTTTTTTCGCCGGTGCACTGGCACCGG
Found at i:95140 original size:13 final size:13
Alignment explanation
Indices: 95114--95149 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
95104 CTAGCTACAC
95114 CTACCACTCACCTA
1 CTACCAC-CACCTA
95128 CTACCACCACCTA
1 CTACCACCACCTA
95141 CTA-CACCAC
1 CTACCACCAC
95150 GTAGCACCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 6 0.27
13 9 0.41
14 7 0.32
ACGTcount: A:0.31, C:0.53, G:0.00, T:0.17
Consensus pattern (13 bp):
CTACCACCACCTA
Left flanking sequence: Indices 94614 -- 95113
GTAGCCCTGTGGGGGCCGTCTACTGCCGAGCCAGCGGGTCTCCGAAACAGCACTGGTCCTCAGAC
GGCGCTAATGGCCGGGTTGTTGCCGGATTACACCCGTTCCGGCCGCGGGCCCCTTTGTTGTCTCT
TCTATTTTCTGCCGTCAGTTTTTCCGACCGTCATTTCTGAATCGGTGCTGCCCCGGTGCTTTTGC
CGTTGTTCGCCCACCGGGCCATTGTCTCTGCTGGCCACGCACTTCGCTCGAGTTGTCACTTGTCC
TGTGTGCCTTCTTCTCTGGCGTGTGCATTCTTCTCGTGACCTGTGCCTTCTTCTCGTAGCGGGTG
CCTCTTCTCCACCTGCCCTCTCCTCCATGATCTGCCCCTTATGACTATGGACTCAGCCATGACTC
GCCATGGCGCCACAATGGCATCGGCACGGAGTCTGTCACCCCTATCAACCTCGGATCCGACCCTG
CCACCTGGACCACCTAAAATAAACCCTATATACCTCTAGCTACAC
Right flanking sequence: Indices 95150 -- 95649
GTAGCACCCCGGCGCACCTCCTCCGTCGCTCTCCTCCCAACCTCTCCTCGCATCGCTCCTCCTCG
TAACCGTCGCACCGTCGGGCACCGGAGAACCCCCGCCGCCGCCGAAGTAAAACACAAACACTAAG
CCAAGCCCGGGTATCGCCGGAACACCTGGGACTCCGAAAGTGAGCCGACCCACCCCCCAGAGCCC
GGTCACGCCGCCGCTGCACCGTCGCCACCCCACACAACAATGGCGGTGCCCGCCGTCCGCTTCGT
ACATCACCCAAGTTTTTTCGCCGGTGCACTGGCACCGGGCACCACTTAGGAGCACATCGCACACG
GAGTCGACGAAGTTGGCCCCGGAAACCGGCATTCCCTGCGCCTGACGATGAGTGTCTCCAAACCC
AAGCCGCTCAAGGTGTTTGGCCGCACCCACTACGCGTGTCTGCGCTGCAAAATGGCCAAGATCCG
CTGTCTGGGCGAGAAGCCGTCGTGCCTGAACTGTGTGCTGGTGCA
Found at i:95951 original size:25 final size:21
Alignment explanation
Indices: 95900--95991 Score: 145
Period size: 21 Copynumber: 4.5 Consensus size: 21
95890 CTCTTCGCTT
95900 GGCCCTCCCTCCTCGCTTTCA
1 GGCCCTCCCTCCTCGCTTTCA
95921 GGCCCTCCCTCCTCGCTTTCA
1 GGCCCTCCCTCCTCGCTTTCA
*
95942 GGCCCTCCCTCCTCAC-TT--
1 GGCCCTCCCTCCTCGCTTTCA
*
95960 GGCCCTCCCTCCTCGCTTTCG
1 GGCCCTCCCTCCTCGCTTTCA
95981 GGCCCTCCCTC
1 GGCCCTCCCTC
95992 TCTCACGGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
18 15 0.23
19 2 0.03
20 2 0.03
21 47 0.71
ACGTcount: A:0.03, C:0.54, G:0.15, T:0.27
Consensus pattern (21 bp):
GGCCCTCCCTCCTCGCTTTCA
Left flanking sequence: Indices 95400 -- 95899
TCCGCTTCGTACATCACCCAAGTTTTTTCGCCGGTGCACTGGCACCGGGCACCACTTAGGAGCAC
ATCGCACACGGAGTCGACGAAGTTGGCCCCGGAAACCGGCATTCCCTGCGCCTGACGATGAGTGT
CTCCAAACCCAAGCCGCTCAAGGTGTTTGGCCGCACCCACTACGCGTGTCTGCGCTGCAAAATGG
CCAAGATCCGCTGTCTGGGCGAGAAGCCGTCGTGCCTGAACTGTGTGCTGGTGCACAAGGGCGAC
CAGTGTGTGTACCCGCTGAAGGACCGCAAGGTGGTGTTTATGGAGCTGGATCTCAACAAGTTGCA
CCAGCGGGTGCAGCAGTTGGAGGCGCAATTGGCGGTGGCCCGAGGCGACGCTGACGAGCCCGAGG
GGTTGGCGATGTCGCCGTCGGCGATGTCCCCGGGGGTGTCGCTCACCCCGACGCTTACCCCGACG
CCGTCGGTGCCGGGGGTGGCCGGGGGCATGCCAACCTCTTCGCTT
Right flanking sequence: Indices 95992 -- 96491
TCTCACGGTGGCCCCCGCTGCTCTCTCCGCCGCTGCCCCCACCACCCTCGCGACCGCCCCCACTG
TCGCCCCCACGGCCCTCTCCGCCCCCCTCTCCACCCCCACGGCCACCACCACCACCCCCGAGCTC
GACGTGTACACCACCCTCGTGGCCGCGTGCCGCCAGCTCCTACCGCCCAAGGAGCTCGCGATGGA
CATGGTGCGCGCCGTGTACATCGCCTACGGGCAGGAGTTCTACCTCACCGAGTGGGAGTGGGCCG
CCGCCGCCTACGACTACGTGGCCGCCGCGGTCCACCAGCAGCCGCTCCCGCCGCCACCAGCGATT
CTTCCGCCCCTGGCCGCGTGCCAGCTGGGCCCCGAGCTCGTCCAGCTGGTGGGCGCCTACCTCTT
GGCGCTCATCGCCTTCGGACAGCAATTACTGCATCGGGCAGTGCTCCCGGAGAACCAGTACCCGG
GGCTCGACTTGTACTTGTTGGCCGAGCACATGCTCCGGGTCAACA
Found at i:95964 original size:39 final size:41
Alignment explanation
Indices: 95900--95997 Score: 146
Period size: 39 Copynumber: 2.4 Consensus size: 41
95890 CTCTTCGCTT
*
95900 GGCCCTCCCTCCTCGCTTTCAGGCCCTCCCTCCTCGCTTTCA
1 GGCCCTCCCTCCTCACTTT-AGGCCCTCCCTCCTCGCTTTCA
*
95942 GGCCCTCCCTCCTCAC-TT-GGCCCTCCCTCCTCGCTTTCG
1 GGCCCTCCCTCCTCACTTTAGGCCCTCCCTCCTCGCTTTCA
95981 GGCCCTCCCTCTCTCAC
1 GGCCCTCCCTC-CTCAC
95998 GGTGGCCCCC
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
39 31 0.58
40 5 0.09
41 2 0.04
42 15 0.28
ACGTcount: A:0.04, C:0.54, G:0.14, T:0.28
Consensus pattern (41 bp):
GGCCCTCCCTCCTCACTTTAGGCCCTCCCTCCTCGCTTTCA
Left flanking sequence: Indices 95400 -- 95899
TCCGCTTCGTACATCACCCAAGTTTTTTCGCCGGTGCACTGGCACCGGGCACCACTTAGGAGCAC
ATCGCACACGGAGTCGACGAAGTTGGCCCCGGAAACCGGCATTCCCTGCGCCTGACGATGAGTGT
CTCCAAACCCAAGCCGCTCAAGGTGTTTGGCCGCACCCACTACGCGTGTCTGCGCTGCAAAATGG
CCAAGATCCGCTGTCTGGGCGAGAAGCCGTCGTGCCTGAACTGTGTGCTGGTGCACAAGGGCGAC
CAGTGTGTGTACCCGCTGAAGGACCGCAAGGTGGTGTTTATGGAGCTGGATCTCAACAAGTTGCA
CCAGCGGGTGCAGCAGTTGGAGGCGCAATTGGCGGTGGCCCGAGGCGACGCTGACGAGCCCGAGG
GGTTGGCGATGTCGCCGTCGGCGATGTCCCCGGGGGTGTCGCTCACCCCGACGCTTACCCCGACG
CCGTCGGTGCCGGGGGTGGCCGGGGGCATGCCAACCTCTTCGCTT
Right flanking sequence: Indices 95998 -- 96497
GGTGGCCCCCGCTGCTCTCTCCGCCGCTGCCCCCACCACCCTCGCGACCGCCCCCACTGTCGCCC
CCACGGCCCTCTCCGCCCCCCTCTCCACCCCCACGGCCACCACCACCACCCCCGAGCTCGACGTG
TACACCACCCTCGTGGCCGCGTGCCGCCAGCTCCTACCGCCCAAGGAGCTCGCGATGGACATGGT
GCGCGCCGTGTACATCGCCTACGGGCAGGAGTTCTACCTCACCGAGTGGGAGTGGGCCGCCGCCG
CCTACGACTACGTGGCCGCCGCGGTCCACCAGCAGCCGCTCCCGCCGCCACCAGCGATTCTTCCG
CCCCTGGCCGCGTGCCAGCTGGGCCCCGAGCTCGTCCAGCTGGTGGGCGCCTACCTCTTGGCGCT
CATCGCCTTCGGACAGCAATTACTGCATCGGGCAGTGCTCCCGGAGAACCAGTACCCGGGGCTCG
ACTTGTACTTGTTGGCCGAGCACATGCTCCGGGTCAACACCGAGC
Found at i:97881 original size:17 final size:18
Alignment explanation
Indices: 97855--97894 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
97845 GTGGGGGAGG
*
97855 GGTGGTGAGTG-TTAGGT
1 GGTGGCGAGTGCTTAGGT
97872 GGTGGCGAGTGCTTAGGT
1 GGTGGCGAGTGCTTAGGT
97890 GGTGG
1 GGTGG
97895 TTGGGTGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.10, C:0.05, G:0.55, T:0.30
Consensus pattern (18 bp):
GGTGGCGAGTGCTTAGGT
Left flanking sequence: Indices 97355 -- 97854
TGGCAGGCGCTCCTGGTGATGGCGATGGCGGCCGTCAACGGGTGTCGCTTCCGCCAGTGGCACAA
GGGGATGGCGTTGTTGCAGTGGATGGCGTCGTGCGGGAACGTGCACGCCATCACCTGTGTGAGCC
GGGTGGCCTCCACGCGGCACATGTTGCTCGAGCGGTTGCAGGTGGACGTGGAGCCGCCCGCGGGG
TCCGGGTACACCGGGTTGGACCCGTACTTGGGGTACTTGCCGCCCATGGCCATCGACGCGGACCC
GGGCGACTTTGGGTGGCTGGTGGACAACATCCCCGCCAACTCGCAGGCGGCGGCGGCGGTGTTGA
CGGAGATCTTGGAGTTGGATTGATTTTTCTGTATATACGGCCCAAACGGGATTTGGGCAATAAAA
GGATATGGTATGCGCGTTTACGAGGTGGTTGCAAAACGGTTGCAAACGACTGAGAGGAGAAAGAC
CCTGCATGAGCGAAGTTGGTAATAACGGGCGGAGTGTGGGGGAGG
Right flanking sequence: Indices 97895 -- 98394
TTGGGTGGGTTTGTGGCCAAGAATGTGGCTGCCATGCGGGTGTATACGAGTGGGAGCACCGCAGA
GCTTATCGGAGCTAGCGAGCTGGTTTTAATTGCTTTGGATTGGCGGTTATGAATACGTTGGGTTA
TGAATCCGGTTATGAATCAAGGGCGGTTGCGAATCAGGGGCGGTTATGATAGTCGAGATTGCTTA
CAGTGGAATGACGTAATAGCAATGGCACAGCTGTGGCTGACTTTGAGAGACCAGCGGCGAAAGCC
GCTTCTTGATGTAATTATATTCCTTTAGGGATACAATTAATCCCATGTTCATCTTGCCAACTCCT
CCATGGGCCACAACTTCGTTAATTTTTTTTCATTTATTTGTGACAATTTTGGGATCTCCAAAACG
AAACCCTAAGAACGAATTCTCCCCCTATGTAATACCACTAACTAGCTACGTAAAGGGATAATTTA
CTTTCTATTATATTCCGACTATTTTTGTGTATTGACATTGAATAT
Done.