sallet_2.scaffold.fasta.s131.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold19
Parameters: 2 7 7 80 10 50 500
Length:  504376

Tables:   1   2   

This is table  1  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18671--18835	3	55.0	3	74	7	102	38	5	29	26	1.79
21181--21246	21	2.9	24	73	13	75	16	33	25	24	1.96
83554--83579	12	2.2	12	100	0	52	7	42	30	19	1.79
88340--88429	42	2.1	42	87	4	128	34	14	22	28	1.93
150397--150704	66	4.7	66	92	1	458	25	26	32	15	1.95
186989--187019	12	2.6	12	100	0	62	16	32	16	35	1.91
186897--187085	99	1.9	100	82	1	236	12	39	17	30	1.87
189866--189898	15	2.2	15	100	0	66	33	60	6	0	1.21
213595--213644	12	4.2	12	80	10	57	36	52	2	10	1.47
213646--213841	13	15.4	13	76	17	198	15	34	15	34	1.89
213644--213757	38	3.1	35	86	9	156	16	35	14	33	1.89
213747--213834	30	3.1	30	71	18	105	14	31	15	37	1.89
213721--213834	56	2.0	56	100	0	228	14	34	15	35	1.89
215254--215284	3	10.3	3	92	0	53	32	29	38	0	1.57
215646--215675	12	2.5	12	94	0	51	3	26	46	23	1.68
216580--216608	14	2.0	15	93	6	51	20	58	20	0	1.39
219719--219743	12	2.1	12	100	0	50	8	24	44	24	1.80
220225--220270	18	2.6	18	85	0	65	28	63	2	6	1.31
221788--221868	33	2.4	34	89	6	119	25	19	30	23	1.98
221984--222026	10	4.4	10	77	16	54	60	2	37	0	1.10
225251--225280	12	2.5	12	94	0	51	6	23	56	13	1.60
249336--249363	8	3.5	8	100	0	56	39	50	10	0	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291072--291150	21	3.8	21	91	1	124	40	8	30	20	1.83
291143--291178	13	2.8	13	91	8	56	38	16	22	22	1.93
291329--291372	15	2.9	15	89	0	70	13	29	4	52	1.60
298139--298209	20	3.5	20	84	5	99	36	1	45	16	1.57
310036--310080	9	5.0	9	94	0	81	0	24	55	20	1.43
310168--310197	9	3.3	9	100	0	60	13	23	43	20	1.86
325468--325492	12	2.1	12	100	0	50	60	16	0	24	1.36
334792--334820	13	2.2	13	100	0	58	20	58	0	20	1.39
336988--337038	15	3.5	15	81	13	70	45	13	29	11	1.79
339698--339759	12	5.4	12	70	18	51	9	43	35	11	1.73
352916--352994	36	2.2	36	95	0	140	18	16	36	27	1.93
368726--368762	9	4.1	9	92	0	65	35	10	54	0	1.36
370509--370560	17	3.1	17	94	0	86	23	36	5	34	1.79
372809--372837	3	9.7	3	100	0	58	0	34	31	34	1.58
375124--375180	16	3.6	16	78	21	75	17	50	1	29	1.56
375123--375180	31	1.9	30	96	3	107	17	50	1	31	1.56
375191--375302	16	7.2	16	77	11	78	25	51	2	19	1.60
375232--375326	16	6.1	15	89	4	127	27	54	1	16	1.49
388880--388936	20	2.8	20	89	0	69	45	1	36	15	1.57
389112--389144	10	3.3	10	100	0	66	0	33	18	48	1.48
392955--392984	15	2.0	15	100	0	60	26	40	6	26	1.81
399686--399745	9	6.7	9	98	0	111	30	0	56	13	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399920--400005	45	1.9	44	88	2	127	23	24	20	31	1.98
400003--400111	16	6.6	16	82	5	128	22	23	14	39	1.91
400364--400391	13	2.2	13	100	0	56	14	57	21	7	1.61
400343--400401	29	2.0	30	86	3	84	22	52	18	6	1.68
400317--400401	17	5.4	17	73	18	85	22	50	18	8	1.73
401643--401703	21	2.9	22	90	7	90	11	50	32	4	1.60
401687--401736	21	2.4	21	96	0	91	20	42	34	4	1.70
401783--401843	18	3.4	18	93	0	104	29	47	22	0	1.52
403191--403241	23	2.2	23	100	0	102	21	54	23	0	1.44
405443--405513	18	3.9	18	87	3	88	22	16	36	23	1.94
405443--405500	18	3.2	18	90	4	89	22	15	37	24	1.93
405777--405821	21	2.2	21	92	4	74	11	15	44	28	1.81
405822--405977	21	7.4	21	71	14	83	14	18	39	27	1.90
405845--405949	42	2.5	42	83	7	124	11	20	40	27	1.86
406318--406352	18	1.9	18	94	0	61	0	34	28	37	1.58
406320--406379	18	3.3	18	83	4	59	6	36	18	38	1.77
406509--406586	15	5.2	14	77	11	50	14	43	23	19	1.87
408031--408086	13	4.3	13	79	0	67	23	3	53	19	1.60
408031--408086	26	2.2	26	86	0	76	23	3	53	19	1.60
408133--408287	8	19.4	8	74	7	66	9	5	43	41	1.58
408135--408194	16	3.8	16	91	4	86	11	0	41	46	1.40
409513--409556	15	3.1	14	84	9	63	9	45	6	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409516--409647	13	10.1	13	80	3	86	13	47	3	34	1.61
409561--409635	25	3.0	24	78	9	69	17	49	2	30	1.60
411349--411395	18	2.6	18	89	0	67	4	0	63	31	1.13
414364--414424	15	4.1	15	95	0	95	24	18	37	19	1.94
416225--416270	24	1.9	24	100	0	92	13	30	26	30	1.93
417136--417185	23	2.2	23	92	0	82	8	42	0	50	1.32
420268--420387	15	8.1	15	79	8	102	15	6	51	26	1.67
420296--420382	30	3.0	30	85	9	119	9	5	58	26	1.51
420268--420382	61	1.9	57	82	6	140	13	6	53	26	1.65
425322--425403	38	2.1	40	95	4	150	21	14	43	19	1.87
426759--426794	14	2.6	14	90	0	54	5	11	38	44	1.63
430638--430755	24	5.2	24	76	12	104	21	27	16	33	1.95
430671--430709	18	2.2	18	90	0	60	25	17	20	35	1.95
430638--431056	60	6.5	60	80	12	370	21	29	17	31	1.96
430721--431087	36	10.9	36	73	14	280	20	30	17	31	1.96
430757--430816	24	2.5	24	91	0	93	21	31	16	30	1.96
430721--431087	96	3.7	96	84	8	473	20	30	17	31	1.96
430788--431087	72	4.3	72	80	10	320	20	29	18	31	1.96
430961--431020	24	2.5	24	80	0	66	23	26	18	31	1.97
430721--431087	168	2.2	165	83	6	445	20	30	17	31	1.96
431173--431460	75	3.8	75	83	0	315	23	23	34	17	1.96
431176--431460	150	1.9	150	83	0	372	24	23	34	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432827--432885	23	2.5	23	91	2	91	15	45	16	22	1.84
439756--439868	15	7.7	15	89	5	121	23	26	25	24	2.00
439762--439868	30	3.7	30	83	9	134	22	27	26	24	2.00
442952--442985	9	3.8	9	88	0	50	5	32	23	38	1.79
444800--444851	23	2.4	21	70	14	52	25	61	0	13	1.32
445457--445492	15	2.3	15	95	4	63	13	22	44	19	1.86
446333--446394	15	3.9	15	72	12	52	20	32	25	20	1.98
446324--446421	9	11.6	9	75	12	82	21	28	27	22	1.99
446324--446415	33	2.8	33	88	0	139	21	28	27	22	1.99
446501--446525	12	2.1	12	100	0	50	16	24	52	8	1.70
447009--447057	19	2.5	20	90	6	82	20	0	20	59	1.38
447244--447286	16	2.7	16	85	10	61	9	62	2	25	1.37
461443--461492	26	1.9	26	91	0	82	24	0	50	26	1.50
461439--461492	13	4.2	13	82	0	63	22	0	51	25	1.48
461443--461505	26	2.4	26	86	0	81	22	3	49	25	1.65
461456--461509	13	4.2	13	82	0	54	20	7	46	25	1.77
461656--461697	18	2.3	18	100	0	84	52	38	0	9	1.34
465633--465678	15	3.7	12	81	18	58	17	2	56	23	1.52
466604--466628	13	1.9	13	100	0	50	28	32	24	16	1.96
466871--466914	20	2.3	19	88	4	61	9	50	2	38	1.47
466900--466945	16	2.9	16	93	3	76	10	47	2	39	1.51
466989--467041	22	2.5	22	87	3	72	41	45	1	11	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470096--470145	18	2.8	18	96	3	93	20	6	52	22	1.68
470195--470232	20	1.9	20	88	0	58	28	15	28	26	1.96
473125--473162	15	2.5	15	95	0	67	15	39	13	31	1.86
477651--477734	13	6.8	12	80	11	82	11	44	1	42	1.49
477634--477728	26	3.7	25	80	17	106	15	42	1	41	1.54
477732--477780	7	7.6	7	84	11	61	0	65	0	34	0.93
478304--478360	16	3.6	16	90	2	89	12	14	42	31	1.82
478390--478421	13	2.5	13	100	0	64	0	9	50	40	1.35
478910--478938	14	2.1	14	100	0	58	6	55	0	37	1.27
479548--479643	12	8.5	12	78	13	96	38	34	19	7	1.80

Tables:   1   2