Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold19
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 504376
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 1 of 2
Found at i:18679 original size:3 final size:3
Alignment explanation
Indices: 18671--18835 Score: 102
Period size: 3 Copynumber: 55.0 Consensus size: 3
18661 CAACCAAAAA
* * * *
18671 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ACG ATA ATG ATG ATC A-C
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
* * * * * * * *
18718 ATCA ACG ACG ATG AAG ATG ATG AAG ATG ATA ATG ATG ATG AAG AAG
1 AT-G ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
* * * *
18764 AAG ATG ATG ATG AT- AGTG ATG ATG ATG GTA ATG ATG ACG ATG ATTG
1 ATG ATG ATG ATG ATG A-TG ATG ATG ATG ATG ATG ATG ATG ATG A-TG
* ** *
18810 -TA ATG ATG ACA ATG ATG ATG ACG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
18836 GTAAAAATAA
Statistics
Matches: 125, Mismatches: 31, Indels: 12
0.74 0.18 0.07
Matches are distributed among these distances:
2 4 0.03
3 117 0.94
4 4 0.03
ACGTcount: A:0.39, C:0.05, G:0.29, T:0.27
Consensus pattern (3 bp):
ATG
Left flanking sequence: Indices 18171 -- 18670
CACAGTTGCTCTGTCATTGCTAGCGCCAGCTCTGAAAAAGCCGAAGAACCCGTTCGAGAAAATGA
TCTTGCACAACGAGCTCCGCCGGTGGGCGGATATACTTGTGATCGCCCCGCTTCTGGCCAATTCG
TTAGCCAAAATTGCGAATGGTGTATGTGATAATCTTCTCACGCTGATTGTGCGCCTGTGGGGACC
AGTGACGACTAGTACGTCGGTTAAAAAACCGATAATGGTTGCACCGGCTATGAATACTTTCATGT
ACATGCATCCTATTACATCAAAGCAGGTCTCTACAATTCAGCTGAGCATTTTCGGTATCGAGGTG
CTCAAACCGATTGAGAAAGTTTTGGCTTGTGGTGATATCGGAATGGGGGGTATGAGAGAATGGCT
GGATATTGTCGACATAATGCGGCGTCGGATCACCGCTATAAAGGAAGAAAGGTTGGCGCTTGATG
GAGTAGAGGGTAACAGAAACGAAGATGATGCGGATCAACCAAAAA
Right flanking sequence: Indices 18836 -- 19335
GTAAAAATAACGATAACGGCGAGGGAAATGAGCTTATTGATTCAAACTCCAGCGACCGTGGCGAA
GCAATGGTTGAAGGTTCGCAGCTCAAATTCGATATTGGAGGCGAAGAAGAACGATTGGCGTCTCC
TGTTCCGCACACGCAAAACATTATATAGCATACATGGGATGGCAAGAGGTCAAATTGATTGGTTT
GTACCAATAGTAGTTGTATCATGAAAATTCCAGTCGCAATAGTGAGGATGTGAATTCCGAAATAG
ACAGGAAAGATGAATTCATGAAACGATTTTCTTATGAAAGCGAATTGGGTTACTCGCTGTCACTG
ATTTGTAAACTCTCAGGTCCTATAGAATACATGCGCCGTTGAGCTGGTCTGCACGAAATAGTGTG
GGATGACGTCACCCCGGAATTAATTCCCGATAAGTATGAGTTTCTCTTTGCTATTTATGTCATTT
CGAGAGCTTGGAAGATCGCGTTCACAGTCCATGCTGTGTGTTTCT
Found at i:21210 original size:24 final size:24
Alignment explanation
Indices: 21181--21246 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 24
21171 GCCGCTGTCT
21181 CCAACTCCACTGGTGGTGCCGCCA
1 CCAACTCCACTGGTGGTGCCGCCA
* * **
21205 CTAACTCTACTGGTGGT---GTTA
1 CCAACTCCACTGGTGGTGCCGCCA
21226 CCAACTCCACTGGTGGTGCCG
1 CCAACTCCACTGGTGGTGCCG
21247 GCAAGAACGG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 17 0.52
24 16 0.48
ACGTcount: A:0.17, C:0.33, G:0.26, T:0.24
Consensus pattern (24 bp):
CCAACTCCACTGGTGGTGCCGCCA
Left flanking sequence: Indices 20681 -- 21180
GGCGCATAGTCACGTCCAAACTCGACATCCAAATCGAGTTTGGCCCACGCAGTTACCTCCAATGT
GTGTGGGTTTATTAAACAGTAGCTAAAATTTTTGATTCCAATGTCAATACCCGCTACGGGACCCT
CGGAAATCCGTGTAGCGAGTTTGATTGCATCAGAAATAGCTTCAGCAGTTGCAGCTTTTGTCGAG
CGAGCTGGTACCCCAGCAAGGGCAGCCACCTGCTTCAACGTCGTCGCCCTTAGAGCATTCATTTC
ATGTATCAGCGAACGGGGCGAAGCAAGAGTAAGATCTGTTGTTGATGGGGTTTATTTTTTCGCTG
TGAGTAATTTCGTGTATTTCTTTTTTTTTATTTTTAAACGCGCAGCTGCAGCTCAGGCGCTCTTG
ACACAGCCCCCCATGTATATAAAAGGGCGTCTTTTCTTGCACTATTCATCACTAATCAAAAATGA
AGTTCGCCACTGTTTTGTTCGCTGCCTCCGCTCTCGCCGCTGTCT
Right flanking sequence: Indices 21247 -- 21746
GCAAGAACGGCTCCAACGGTTCTGGTGACAAGGAGGGTAACGCTGCTGCCACCGTCGGTGCTGGT
GTTGCTGGTGTTGTCGCCGCTGTTGGTGCCGCCCTTTTGATTTAAGAGTTCACTTTTCAGTGTTA
CTTTTAGATAAAGGTTCTGAGTGTACTATAGCAGGTTCTATTTAATTAATTAATATCACTAATAT
TCAATCGCTCATCAATTGTAGAGATTTCGATGCCTATGGAGTATTTTCGTTTCTGTTCGAATGTT
ACCCATTCTAGTTAAGGGTGAGGGCTCCTGAAAAATCTGTGCATGCATTATGCAAGTTTGTAGAA
TCGTTTCAAGAAGCAGCCCATGATGGATGGCTGTCTTTAATGCTAAGAGATCGGTAAAACCCATA
TTCGTCGTTAATTTCCCTTAGATTTGGTACGTTTTGGCGGGTAATAGTTAGTATAAAGGTACACA
AATGATATGATTGACGTACTTAAAATTCATTGAGACTCGTCACGC
Found at i:83571 original size:12 final size:12
Alignment explanation
Indices: 83554--83579 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83544 GAAATCATCA
83554 CTGCGGCCACTG
1 CTGCGGCCACTG
83566 CTGCGGCCACTG
1 CTGCGGCCACTG
83578 CT
1 CT
83580 CAAACCATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.42, G:0.31, T:0.19
Consensus pattern (12 bp):
CTGCGGCCACTG
Left flanking sequence: Indices 83054 -- 83553
TCGATGCTGACACGCTGATACTGACTACGGAAGCGCTGTTAGAGCTGGTGAAAGAGCGACGGTTT
GCTATTTCCAAGCTTTTCGCGCGGCGTCCTGGGGACTCGGATGACTCTGATATCGACGACGGCCT
GATCCGAGCTCTTGATGACGACAACAATCTGGTTGCGGTAGCACTGCTTCATGACGATGCGACCG
TAAAAGCCCCTCCACTCCCTCGTCGCCGTCGGGTCCTGGATTTGCTGGTTGTATCTGACTTTGGT
GTTTTGGTTGACAAAGATGGTCGCGTAGTCCGCAAAATCACATCAGACGATGAATTCGAACTGGC
AGGAGAGGAAGAAAATGATGACTACGACGACGGTTATGATGATGATGCTTTACTGCTGCTGGACT
CTGCATTCACTGATATTGACGCACTGCTGATGATGCTGCTGCTGATGCTCCCCGAACTGTTCATC
GATCTGGGTACTTTTGACTATAGCAAACTGCGAAAGAAATCATCA
Right flanking sequence: Indices 83580 -- 84079
CAAACCATTAAAAGAAAAACTGACCGTGCTGTTGCGCAAACTGACGCTAACGTTTGAGAAAATGA
CGCCTAATGACGCTTCCACTACTTCAGCACTATCGCACATGATACAAGCTAAATTAAAACCCACT
GGCCATCCGCACCCCCTCTCGTACTACGCTTTTGTTGGAGAAGGAGCGCTGGCGATGGTCACCGT
ATTTGTACCAGATCACGATCGCATAGAGGTGCAAGTAAACGTGAACGCAGCGATTGCTGATTGCA
TTGGCTATATCTTGTGGTCACTCGTACGTGCAGAGGTGCCTGTTTCTTTAATCAATCCAAATCAA
TGGCAATTAGAGCTTGTTGATGAAGATGGCGAAGATTATGGTACCTTCGGCTTGCTTAACCGGAC
TAGGATTTTTTCACTGTACAATAACCCACCATATGTTGCAATTAAGCAGGCGCTGGCCGTCGATG
CGGCAACTAATGAGACTACAACTCCCTTGGCAATGGAGTATAAGG
Found at i:88399 original size:42 final size:42
Alignment explanation
Indices: 88340--88429 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 42
88330 TGGCGCATCA
* *
88340 AAACTGTTCAATAGGAGGAATTGCAGGTATATGAACTATTCT
1 AAACTGTTCAATAGGAGGAATTGCAAGTATATGAACCATTCT
*
88382 AAACTGTTC-ATGGGGAGGAATTGCAAGTATATGAACCATTCT
1 AAACTGTTCAAT-AGGAGGAATTGCAAGTATATGAACCATTCT
*
88424 ACACTG
1 AAACTG
88430 CATAGAAGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (42 bp):
AAACTGTTCAATAGGAGGAATTGCAAGTATATGAACCATTCT
Left flanking sequence: Indices 87840 -- 88339
TGACTGGCTAACAATTGGTGATTTAGCTCGCTGAAGAGATTTCGGCGCCGTGGTTCAAAGTTTGC
CAAATTTGTCCGCGCGGGCTCTGGAACTGGGGGCAGGTTGGCAGTCGCCAGGATCAAAACTTGAG
GATTATCAAACTTCATACGAGGGTATGCAACGATAAACTCAAACTTCCAAGCAGCAATCCCGTTA
TAAGTAGTCATTTCGCTTACAATCGTATCATATATGCTGAAATGAGCGTTTGCATCATGGTCTCG
TCGATAAGTGGTGACGTGGTCCGCGGGTAGGATTGAGACATCTATGGAGATCAGCGAGTATTGTG
TTGTTGGGTCGGAGCAAGTAACATACCCCTGTACCACCTCATCGAAGAAACATATTCGCCGCAGA
CCGCTACCTATCGGAAGTACGATCTCGAGCGCCATAAGTTTCGCTCACGAAGTGTACGATCTGGT
TAGAAATTGGCGCGCAACGCGACTGATATCTCGCATGGCGCATCA
Right flanking sequence: Indices 88430 -- 88929
CATAGAAGCACATTTGGGTGAAATCCATCATGTATCGCTGCTACTGTTTTCGATCAATTTGAAAG
TTGGTGGAGCTCCAAAAGATGCGATAGTCCAACGCGAATGACTCTATAACGGGGAATAAGGTTCT
GGCCATATATTCCAAAACAGTGCACCCAGTTGTCAAATCGATAATGCAGATAGAAGCAAAAATAA
ATCGGAAATAGATTTTGGGGCTTGCCAGGAATCGAACCCGGGATCTCGTCCAATTTTAGCTCCCA
AAGGACGCGCCTTACCACTCGGCCACAAACCCAATGATACAAACTTTTTTTTGCACTTCAAGAGA
CTCCGCAAGTCTAAAATCCGTGAGGTATTCTAGGGAAATTTTGAGATTTAGAAAAGGGATCATAC
TTGAAACCTCTGAGAGGTTTGACTAAGCCTTACCACTGTGGCTTCGATGGATTAACGGTACCATA
AGGGCAAACCCTGTGTTTTTTATTTTTTATCAGATCTTACGTATC
Found at i:150489 original size:66 final size:66
Alignment explanation
Indices: 150397--150704 Score: 458
Period size: 66 Copynumber: 4.7 Consensus size: 66
150387 GTAAACTGAT
* * *
150397 CTCAGGCTCTGTCGGTTCAGGGGCAGGCACCTCGGGCAAACTGACCTCAGGCTCAGTAGGAGGAA
1 CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACTAACCTCAGGCTCAGTAGGAGGAA
150462 G
66 G
* *
150463 TTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCGGGCAAACTAACCTCAGGCTCAGTAGGAGGAA
1 CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACTAACCTCAGGCTCAGTAGGAGGAA
150528 G
66 G
* * ** *
150529 CTCAGGCTCAG-AGGAGCATGGAGCAGGCACCTCAGGCAAACTGACCTCAGGCTCAGTAGGAGGA
1 CTCAGGCTCTGTCGGTTCA-GGAGCAGGCACCTCAGGCAAACTAACCTCAGGCTCAGTAGGAGGA
150593 AG
65 AG
* * **
150595 CTCAGGCTCAG-AGGAGCATGGAGCAGGCACCTCAGGCAAACTAACCTCAGGCTCAGTAGGAGGA
1 CTCAGGCTCTGTCGGTTCA-GGAGCAGGCACCTCAGGCAAACTAACCTCAGGCTCAGTAGGAGGA
150659 AG
65 AG
150661 CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACTAA
1 CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACTAA
150705 TGTCCGGCTT
Statistics
Matches: 225, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
65 4 0.02
66 217 0.96
67 4 0.02
ACGTcount: A:0.26, C:0.27, G:0.32, T:0.15
Consensus pattern (66 bp):
CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACTAACCTCAGGCTCAGTAGGAGGAA
G
Left flanking sequence: Indices 149897 -- 150396
ACATGACCAAAGTCGTTAGAGATCGTGAGGTATTGGGTCCATTTCACTATTCGTGATCGCCACTG
CGGCAATGGTTGGTAAAGTTTACGAAGTGAAGGAAAAATTCATTAATTATAGTCCCTTTCCAAAA
TCACAAATTCAATTCGGCAAATTCAAAGGAGCGCAAAAGCAAGGGCTACAGCAACACCGGCAAAT
CCAACATTCTCTCTGAACCCGCAACCCTCCACAGGTGGTAGAGAGGGAACCATCAGCGAGTCAAA
CACTGATAAATCTGTGGTTACAGTCGTCTCAATTGTTTCAGCGGGTGGTTCCGTAGCACTTTCTT
CCGTTCCCACTGAAGGCTTTGTATTCGTTGTCTCAGGCGTGGAAACTTGCGGCGTGGAATTCAAC
GGAGGCACCACAGTAGGAACAGGCGAGGGGATTGGTTCAACAGTTGGTACAGGAGGCAAAGGAAT
GCTAGACATTCCAGGAGGTACCCCCGATGACTCAGGTAAACTGAT
Right flanking sequence: Indices 150705 -- 151204
TGTCCGGCTTAGTTGGGGGGAGCGTTTGCTCGGGAGTAGGAATCTCAACTGTAGGTACTTCTGGT
TCAACCCCGGAATGAAATGAACCAGCAGAGACGATAACAGCGAGAGAGATAAAGGTAGCAAACGA
GAAAATCATGTGGATGTATTGGCGATAATAGGTAAATGGAGCTTTATATATACCCTCACCCTGCT
ATTAGTCTCAAATATCCAACAAGGCTCTAGTTTCCTTAGTTCTCGGCCCATGTGTCGCGCAATGT
ATATCGCTGCATTGGTTCAACCCACTCCTCGAGGTGCTTCATTGACGGGTGTGCGAAAGCCGATG
AATGGCCTAAAAATAGCCAACCTCCAGTTTCCGTATGAGGTAGACAAATGCTAAACCCTCTATTT
TGAAACAATAATCCCGAACCTTAGGCAATATCAACTTCCTACAAATCATCAACCAAAAGCCTGCG
AAGGGAAGGTGCCGGGAATGGGTACTGACAGTTCTTGTGCCAGGC
Found at i:187006 original size:12 final size:12
Alignment explanation
Indices: 186989--187019 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
186979 CGCCCGCATT
186989 GTCCTTAACCTG
1 GTCCTTAACCTG
187001 GTCCTTAACCTG
1 GTCCTTAACCTG
187013 GTCCTTA
1 GTCCTTA
187020 GCCTCGTTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.35
Consensus pattern (12 bp):
GTCCTTAACCTG
Left flanking sequence: Indices 186489 -- 186988
CCGGCATTGACTTGTCCCGAGTTGTCGAAAGTAACTCGGGCACTCGATGCGCCTGCTAGTTTGAT
ATTTCAGCTAGTGTATCATGTATCATTTAATATTTACGTCTAGTTTTTGGACTCCGACTTCGGCT
GGGCCGCGGACGTGTCGTCGTCATCTTCATACAATTCGTCCTTGTAGTGGTCAGGGTGTCTCTTG
AAGCACAGTCTCATGGTTTCAAACTTTTTAATGCAGTCAATGCCCTTGGGCTCGGTTTCCAGGTA
CACGAAACACGAAAACGCTTCCTTGAACTCCTCACCGCAGGGACCATGGGCCATGCCACCAAGGC
AAGGGCAGTCCCAGTTGATTTCGCCGGTCTCGGGGTCGTAGGCTCCCTTCTGCTCAGCCTCTTCG
GTCTTGCCCTTGGCTTCGCCTGCGTCCTTAACCTTATCCTTCGCGTCGCTAGCCTTTTCCTTGGC
ATCTCCAGCAACCTCCTTGGCCTTATCCTTAGCGGCGCCCGCATT
Right flanking sequence: Indices 187020 -- 187519
GCCTCGTTCGCCTTGTCCTTGGCGTCACCAGCGACATCCTTCGCCTTCTCCTTAGCGTCACCCGC
AGCCTTCTTGGCATCACCAGCAACATTCTGAGCCTTGCCCTTCGCATCGCCGGCCATGTCCTCAG
CCTTGCCCTTGGCCTCGCCAACTGCCTTCTTCGCGTCTCCGGCAACGTCGCCAGCAGTCTTCTCC
GCCTTGCCCACGACATCACCTGCAGCCTTCTTAGCATCGTCCACCACGCCAGAAACCGCCTCCTC
GGTGGACTTCTTGCCAGTGATAACATCCTTACCAGCACCAACCACCGTGTCCGTCGCCTTACCCT
TGACATCCTCAACTGCCTTGGTGGCGGTCTCCTTGGCATCCCCTGCGGACTCTACCGCCTTGTGG
GCAGCAGGAACAGCCGCCTTAACAATGTCCTTGCCAAGCTCGACCGCGTCGTTGAGGGAGTCTTT
GGTGAAGTCAGCAGCACGCTTGTTGACAGCGTTGTACGCGCCAAT
Found at i:187073 original size:99 final size:100
Alignment explanation
Indices: 186897--187085 Score: 236
Period size: 99 Copynumber: 1.9 Consensus size: 100
186887 CTTGGCTTCG
* * * * * *
186897 CCTGCGTCCTTAACCTTATCCTTCGCGTCGCTAGCCTTTTCCTTGGCATCTCCAGCAACCTCCTT
1 CCTGCGTCCTTAACCTGATCCTTAGCCTCGCTAGCCTTGTCCTTGGCATCACCAGCAACATCCTT
* *
186962 GGCCTTATCCTTAGCGGCGCCCGCATTGTCCTTAA
66 CGCCTTATCCTTAGCGGCACCCGCATTGTCCTTAA
* * * * *
186997 CCTG-GTCCTTAACCTGGTCCTTAGCCTCGTTCGCCTTGTCCTTGGCGTCACCAGCGACATCCTT
1 CCTGCGTCCTTAACCTGATCCTTAGCCTCGCTAGCCTTGTCCTTGGCATCACCAGCAACATCCTT
* *
187061 CGCCTTCTCCTTAGCGTCACCCGCA
66 CGCCTTATCCTTAGCGGCACCCGCA
187086 GCCTTCTTGG
Statistics
Matches: 74, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
99 70 0.95
100 4 0.05
ACGTcount: A:0.12, C:0.39, G:0.18, T:0.31
Consensus pattern (100 bp):
CCTGCGTCCTTAACCTGATCCTTAGCCTCGCTAGCCTTGTCCTTGGCATCACCAGCAACATCCTT
CGCCTTATCCTTAGCGGCACCCGCATTGTCCTTAA
Left flanking sequence: Indices 186397 -- 186896
CGTGCTAGAGGTGTCTAGTAAGACCGACACTCTCAACGAACTTTTTGCCAGAGTCGCCCAGGTGG
GTTCGCGGGAACACGCGACGCGTCAAGCCGGCATTGACTTGTCCCGAGTTGTCGAAAGTAACTCG
GGCACTCGATGCGCCTGCTAGTTTGATATTTCAGCTAGTGTATCATGTATCATTTAATATTTACG
TCTAGTTTTTGGACTCCGACTTCGGCTGGGCCGCGGACGTGTCGTCGTCATCTTCATACAATTCG
TCCTTGTAGTGGTCAGGGTGTCTCTTGAAGCACAGTCTCATGGTTTCAAACTTTTTAATGCAGTC
AATGCCCTTGGGCTCGGTTTCCAGGTACACGAAACACGAAAACGCTTCCTTGAACTCCTCACCGC
AGGGACCATGGGCCATGCCACCAAGGCAAGGGCAGTCCCAGTTGATTTCGCCGGTCTCGGGGTCG
TAGGCTCCCTTCTGCTCAGCCTCTTCGGTCTTGCCCTTGGCTTCG
Right flanking sequence: Indices 187086 -- 187585
GCCTTCTTGGCATCACCAGCAACATTCTGAGCCTTGCCCTTCGCATCGCCGGCCATGTCCTCAGC
CTTGCCCTTGGCCTCGCCAACTGCCTTCTTCGCGTCTCCGGCAACGTCGCCAGCAGTCTTCTCCG
CCTTGCCCACGACATCACCTGCAGCCTTCTTAGCATCGTCCACCACGCCAGAAACCGCCTCCTCG
GTGGACTTCTTGCCAGTGATAACATCCTTACCAGCACCAACCACCGTGTCCGTCGCCTTACCCTT
GACATCCTCAACTGCCTTGGTGGCGGTCTCCTTGGCATCCCCTGCGGACTCTACCGCCTTGTGGG
CAGCAGGAACAGCCGCCTTAACAATGTCCTTGCCAAGCTCGACCGCGTCGTTGAGGGAGTCTTTG
GTGAAGTCAGCAGCACGCTTGTTGACAGCGTTGTACGCGCCAATCGAAGCGCCCACGACGTTGCT
CGAACCGTCAAAGGACTCAATGACATCGTTGATGGCACCCGAAGC
Found at i:189886 original size:15 final size:15
Alignment explanation
Indices: 189866--189898 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
189856 CCCGAGCTCC
189866 CCACCAAGCCCACCA
1 CCACCAAGCCCACCA
189881 CCACCAAGCCCACCA
1 CCACCAAGCCCACCA
189896 CCA
1 CCA
189899 ACATACCGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.61, G:0.06, T:0.00
Consensus pattern (15 bp):
CCACCAAGCCCACCA
Left flanking sequence: Indices 189366 -- 189865
CCCGGCTTGTTGGCGATGATTGAAATCACAACAACTAACGTCCAGGCGGACCTGGACTTATTCCA
GACGGTGGTGCGGTTTCTTTCCCATTTTATTGGCAAGTTGTTGTGCGGATGGGTGTGGGTGCTTG
GTCTTTTGATTGGCTCGTTAATCAGATCTACCTACAAGTGGGGTTACTTCACCTTTGCTGCCGTG
GGTCAGCTTGTAGGCATCATCCTTATTGGCTGGCGCATGTACCGCTCCTGGAGTGCTGTGGGCAC
CAGAGGTAAGGTTTGGTTGTGCAACTTGGTTATTCTTTTGTGGTTTGTGGTCTGGCTTCTCCAGA
CTATTGCTTGGGGTTGTTCTGAGGGTGGTAACCGCATCCAACCGACCTCAGAGGCCATCTGGTAC
GGTGTCAGCGACATTGTTGGCTTTGGTATCATTCCAATTCTTATGGCTTGGCTTTTATCTGGTGC
TATTGACGACGGCGTCTTCACCAAGTTCACTGCCGCCCGAGCTCC
Right flanking sequence: Indices 189899 -- 190398
ACATACCGAGAAGGTGAACGACAACGGGGTTGATGAGACTCCCCGTGCTTCTGGTGACACTGAGG
TACCAGTCGAGAACAGCGTTTAATTAATGTTTGATTTCTAATCTCGGATAGTTTTCGTATTTCGT
GAATTACTATGTACATGGTTTACTTTCTCACATCTCTGAAGTCCTTGATCTCATCAATTTCCTCG
ATGTCGGGCTCCAGCACATACTTCAGTGCCAATATCAAGGACACGACTGCGACTCCAATGCTACC
CACTCCGAGCCGGCGAATAGTACGCATTGTCTTCTGGGACTCCTCGGTTGTCTCGTCACCAATTT
TGCGGAAATGGGCATCGACCTCTTTGATCTTTGATTTCACACCACCGGTGGGCATCAGCTGGAAG
CGTTTACACACCAAAATCAGACCCCGGCGGATCATAGGGTTCATCATTGTGGCCTGCACTAAAAA
TTTGGGTGCGTCGATCGAGTATATGAAGTGCGTGAGACCAACGTT
Found at i:213612 original size:12 final size:12
Alignment explanation
Indices: 213595--213644 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
213585 AACCCGGCAC
213595 ACCCACCTACAA
1 ACCCACCTACAA
213607 ACCCACCCTAC-A
1 ACCCA-CCTACAA
**
213619 ACCCACCTACGC
1 ACCCACCTACAA
*
213631 ACCTACCTACAA
1 ACCCACCTACAA
213643 AC
1 AC
213645 TCATTGGTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 5 0.16
12 22 0.69
13 5 0.16
ACGTcount: A:0.36, C:0.52, G:0.02, T:0.10
Consensus pattern (12 bp):
ACCCACCTACAA
Left flanking sequence: Indices 213095 -- 213594
CGGGTGGGGGTGGTCGACACTGCCCGGTGGCTCGGGCTCGCGTGGGCGGTGGTCCGATGCAAGGT
TTGCTGTCCTGCGGGGTATGGTCGCAGTGAAACGGTCACAGCGTTTGTAACGCCTCTGATATCGC
GTGCCAACGCCGTATGCGCATCCCAATCCAGTAATTTTCTGTGGCCACCACCGGCACACTGGATC
TGGGGGGATCGAGCCATTGTCGCGTGCATGGATTGGCAGGGAGCCATTGACGCTCGGGCTAAAGG
AGCCCCGCTAAACCTAATGCCTCTGCGTGCGAACGCGTGTGCAACCCGTAGCGCAACCCTATGGC
CCAAACAAGTAGCCTGCGCGGTCAACCGTGGAAGGTTGCCAGCCAGTAAGAAACTTGCCAGTCCC
GGTGAAACAACCCGAAAGGTGAATCAGGACCAATCCGGCCAGCCTACTAGTGGTGACCACAACCC
CTAGCGTACCCATTTGCACCATCACCCTGCAAACCAACCCGGCAC
Right flanking sequence: Indices 213645 -- 214144
TCATTGGTCTCACATCCATTGGTCTCACCCATTGGTCTCATTGGTCTCACCCATTGGTCTCACCC
ATTGATCTCACCATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACCCATTGGTTCATTGGT
CTCATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACCCATTGGTTCATTGGTCTCACCCAT
TGACCCCTTCCCCCTTCGCACTGTTTGTCCCACGGGCGCAACCCGAGTCAACCAATAAACGCAGC
ACGTGACGAGTTTTTCCGGTGGGATGTGACGTTGTAGAAAGTGGGCGCCGCCGCCACCGCCACCC
ACCCCGTAGACCCGGCGACCACCGGCGGCTCCACCACCGCCACCGCCACGGGCACCGCCCGCCAC
CCCCACGTTCCATTGGCTCGTCACCGCCAGGTTCGCACCAGAAAAATAGAAAAATCCCTCCGCAA
AAGTGTCATCAATAGAGCGAGCGGGGCATATGAGTAACGAAGACA
Found at i:213678 original size:13 final size:13
Alignment explanation
Indices: 213646--213841 Score: 198
Period size: 13 Copynumber: 15.4 Consensus size: 13
213636 CCTACAAACT
213646 CATTGGTCTCACATC
1 CATTGGTCTCAC--C
213661 CATTGGTCTCACC
1 CATTGGTCTCACC
213674 CATTGGTCT----
1 CATTGGTCTCACC
213683 CATTGGTCTCACC
1 CATTGGTCTCACC
213696 CATTGGTCTCACC
1 CATTGGTCTCACC
*
213709 CATTGATCTCA-C
1 CATTGGTCTCACC
213721 CATTGGTCTCACC
1 CATTGGTCTCACC
*
213734 CATCGGTCTCACC
1 CATTGGTCTCACC
*
213747 CATTGTTCTCACC
1 CATTGGTCTCACC
*
213760 CATTGGT-TCATTGGTCT
1 CATTGGTCTCA-----CC
213777 CATTGGTCTCACC
1 CATTGGTCTCACC
*
213790 CATCGGTCTCACC
1 CATTGGTCTCACC
*
213803 CATTGTTCTCACC
1 CATTGGTCTCACC
213816 CATTGGT-T----
1 CATTGGTCTCACC
213824 CATTGGTCTCACC
1 CATTGGTCTCACC
213837 CATTG
1 CATTG
213842 ACCCCTTCCC
Statistics
Matches: 153, Mismatches: 12, Indels: 34
0.77 0.06 0.17
Matches are distributed among these distances:
8 7 0.05
9 10 0.07
12 15 0.10
13 98 0.64
15 12 0.08
17 8 0.05
18 3 0.02
ACGTcount: A:0.16, C:0.35, G:0.15, T:0.34
Consensus pattern (13 bp):
CATTGGTCTCACC
Left flanking sequence: Indices 213146 -- 213645
GTCCGATGCAAGGTTTGCTGTCCTGCGGGGTATGGTCGCAGTGAAACGGTCACAGCGTTTGTAAC
GCCTCTGATATCGCGTGCCAACGCCGTATGCGCATCCCAATCCAGTAATTTTCTGTGGCCACCAC
CGGCACACTGGATCTGGGGGGATCGAGCCATTGTCGCGTGCATGGATTGGCAGGGAGCCATTGAC
GCTCGGGCTAAAGGAGCCCCGCTAAACCTAATGCCTCTGCGTGCGAACGCGTGTGCAACCCGTAG
CGCAACCCTATGGCCCAAACAAGTAGCCTGCGCGGTCAACCGTGGAAGGTTGCCAGCCAGTAAGA
AACTTGCCAGTCCCGGTGAAACAACCCGAAAGGTGAATCAGGACCAATCCGGCCAGCCTACTAGT
GGTGACCACAACCCCTAGCGTACCCATTTGCACCATCACCCTGCAAACCAACCCGGCACACCCAC
CTACAAACCCACCCTACAACCCACCTACGCACCTACCTACAAACT
Right flanking sequence: Indices 213842 -- 214341
ACCCCTTCCCCCTTCGCACTGTTTGTCCCACGGGCGCAACCCGAGTCAACCAATAAACGCAGCAC
GTGACGAGTTTTTCCGGTGGGATGTGACGTTGTAGAAAGTGGGCGCCGCCGCCACCGCCACCCAC
CCCGTAGACCCGGCGACCACCGGCGGCTCCACCACCGCCACCGCCACGGGCACCGCCCGCCACCC
CCACGTTCCATTGGCTCGTCACCGCCAGGTTCGCACCAGAAAAATAGAAAAATCCCTCCGCAAAA
GTGTCATCAATAGAGCGAGCGGGGCATATGAGTAACGAAGACACGGGGAGTACCACCCCCGCCGC
CGCCCGCCCGGCTCCGCAGGAGGTGTTCAGTGGCGGCGCCACCACGTCGCAGCACGTGGACGCCC
ACGACGACGAGCACTTCGAAAACACCACCTTCAAGCTCAAACGCACCCGGTCGCTCGGGTTGTTG
GACGAGTTCATCGACCCGGACAAGCAGGCGGAGCGGATCGAGGAC
Found at i:213706 original size:35 final size:35
Alignment explanation
Indices: 213644--213757 Score: 156
Period size: 38 Copynumber: 3.1 Consensus size: 35
213634 TACCTACAAA
*
213644 CTCATTGGTCTCACATCCATTGGTCTCACCCATTGGT
1 CTCATTGGTCTCAC--CCATTGGTCTCACCCATTGAT
213681 CTCATTGGTCTCACCCATTGGTCTCACCCATTGAT
1 CTCATTGGTCTCACCCATTGGTCTCACCCATTGAT
* *
213716 CTCACCATTGGTCTCACCCATCGGTCTCACCCATTGTT
1 CT---CATTGGTCTCACCCATTGGTCTCACCCATTGAT
213754 CTCA
1 CTCA
213758 CCCATTGGTT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
35 24 0.34
37 14 0.20
38 33 0.46
ACGTcount: A:0.17, C:0.36, G:0.14, T:0.33
Consensus pattern (35 bp):
CTCATTGGTCTCACCCATTGGTCTCACCCATTGAT
Left flanking sequence: Indices 213144 -- 213643
TGGTCCGATGCAAGGTTTGCTGTCCTGCGGGGTATGGTCGCAGTGAAACGGTCACAGCGTTTGTA
ACGCCTCTGATATCGCGTGCCAACGCCGTATGCGCATCCCAATCCAGTAATTTTCTGTGGCCACC
ACCGGCACACTGGATCTGGGGGGATCGAGCCATTGTCGCGTGCATGGATTGGCAGGGAGCCATTG
ACGCTCGGGCTAAAGGAGCCCCGCTAAACCTAATGCCTCTGCGTGCGAACGCGTGTGCAACCCGT
AGCGCAACCCTATGGCCCAAACAAGTAGCCTGCGCGGTCAACCGTGGAAGGTTGCCAGCCAGTAA
GAAACTTGCCAGTCCCGGTGAAACAACCCGAAAGGTGAATCAGGACCAATCCGGCCAGCCTACTA
GTGGTGACCACAACCCCTAGCGTACCCATTTGCACCATCACCCTGCAAACCAACCCGGCACACCC
ACCTACAAACCCACCCTACAACCCACCTACGCACCTACCTACAAA
Right flanking sequence: Indices 213758 -- 214257
CCCATTGGTTCATTGGTCTCATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACCCATTGGT
TCATTGGTCTCACCCATTGACCCCTTCCCCCTTCGCACTGTTTGTCCCACGGGCGCAACCCGAGT
CAACCAATAAACGCAGCACGTGACGAGTTTTTCCGGTGGGATGTGACGTTGTAGAAAGTGGGCGC
CGCCGCCACCGCCACCCACCCCGTAGACCCGGCGACCACCGGCGGCTCCACCACCGCCACCGCCA
CGGGCACCGCCCGCCACCCCCACGTTCCATTGGCTCGTCACCGCCAGGTTCGCACCAGAAAAATA
GAAAAATCCCTCCGCAAAAGTGTCATCAATAGAGCGAGCGGGGCATATGAGTAACGAAGACACGG
GGAGTACCACCCCCGCCGCCGCCCGCCCGGCTCCGCAGGAGGTGTTCAGTGGCGGCGCCACCACG
TCGCAGCACGTGGACGCCCACGACGACGAGCACTTCGAAAACACC
Found at i:213787 original size:30 final size:30
Alignment explanation
Indices: 213747--213834 Score: 105
Period size: 30 Copynumber: 3.1 Consensus size: 30
213737 CGGTCTCACC
213747 CATTGTTCTCACCCATTGGTTCATTGGTCT
1 CATTGTTCTCACCCATTGGTTCATTGGTCT
* * *
213777 CATTGGTCTCACCCATCGGTCTCA-----CC
1 CATTGTTCTCACCCATTGGT-TCATTGGTCT
213803 CATTGTTCTCACCCATTGGTTCATTGGTCT
1 CATTGTTCTCACCCATTGGTTCATTGGTCT
213833 CA
1 CA
213835 CCCATTGACC
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
25 3 0.07
26 19 0.41
30 21 0.46
31 3 0.07
ACGTcount: A:0.15, C:0.32, G:0.16, T:0.38
Consensus pattern (30 bp):
CATTGTTCTCACCCATTGGTTCATTGGTCT
Left flanking sequence: Indices 213247 -- 213746
CCAATCCAGTAATTTTCTGTGGCCACCACCGGCACACTGGATCTGGGGGGATCGAGCCATTGTCG
CGTGCATGGATTGGCAGGGAGCCATTGACGCTCGGGCTAAAGGAGCCCCGCTAAACCTAATGCCT
CTGCGTGCGAACGCGTGTGCAACCCGTAGCGCAACCCTATGGCCCAAACAAGTAGCCTGCGCGGT
CAACCGTGGAAGGTTGCCAGCCAGTAAGAAACTTGCCAGTCCCGGTGAAACAACCCGAAAGGTGA
ATCAGGACCAATCCGGCCAGCCTACTAGTGGTGACCACAACCCCTAGCGTACCCATTTGCACCAT
CACCCTGCAAACCAACCCGGCACACCCACCTACAAACCCACCCTACAACCCACCTACGCACCTAC
CTACAAACTCATTGGTCTCACATCCATTGGTCTCACCCATTGGTCTCATTGGTCTCACCCATTGG
TCTCACCCATTGATCTCACCATTGGTCTCACCCATCGGTCTCACC
Right flanking sequence: Indices 213835 -- 214334
CCCATTGACCCCTTCCCCCTTCGCACTGTTTGTCCCACGGGCGCAACCCGAGTCAACCAATAAAC
GCAGCACGTGACGAGTTTTTCCGGTGGGATGTGACGTTGTAGAAAGTGGGCGCCGCCGCCACCGC
CACCCACCCCGTAGACCCGGCGACCACCGGCGGCTCCACCACCGCCACCGCCACGGGCACCGCCC
GCCACCCCCACGTTCCATTGGCTCGTCACCGCCAGGTTCGCACCAGAAAAATAGAAAAATCCCTC
CGCAAAAGTGTCATCAATAGAGCGAGCGGGGCATATGAGTAACGAAGACACGGGGAGTACCACCC
CCGCCGCCGCCCGCCCGGCTCCGCAGGAGGTGTTCAGTGGCGGCGCCACCACGTCGCAGCACGTG
GACGCCCACGACGACGAGCACTTCGAAAACACCACCTTCAAGCTCAAACGCACCCGGTCGCTCGG
GTTGTTGGACGAGTTCATCGACCCGGACAAGCAGGCGGAGCGGAT
Found at i:213802 original size:56 final size:56
Alignment explanation
Indices: 213721--213834 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
213711 TTGATCTCAC
213721 CATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACCCATTGGTTCATTGGTCT
1 CATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACCCATTGGTTCATTGGTCT
213777 CATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACCCATTGGTTCATTGGTCT
1 CATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACCCATTGGTTCATTGGTCT
213833 CA
1 CA
213835 CCCATTGACC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.15, C:0.34, G:0.16, T:0.35
Consensus pattern (56 bp):
CATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACCCATTGGTTCATTGGTCT
Left flanking sequence: Indices 213221 -- 213720
TCGCGTGCCAACGCCGTATGCGCATCCCAATCCAGTAATTTTCTGTGGCCACCACCGGCACACTG
GATCTGGGGGGATCGAGCCATTGTCGCGTGCATGGATTGGCAGGGAGCCATTGACGCTCGGGCTA
AAGGAGCCCCGCTAAACCTAATGCCTCTGCGTGCGAACGCGTGTGCAACCCGTAGCGCAACCCTA
TGGCCCAAACAAGTAGCCTGCGCGGTCAACCGTGGAAGGTTGCCAGCCAGTAAGAAACTTGCCAG
TCCCGGTGAAACAACCCGAAAGGTGAATCAGGACCAATCCGGCCAGCCTACTAGTGGTGACCACA
ACCCCTAGCGTACCCATTTGCACCATCACCCTGCAAACCAACCCGGCACACCCACCTACAAACCC
ACCCTACAACCCACCTACGCACCTACCTACAAACTCATTGGTCTCACATCCATTGGTCTCACCCA
TTGGTCTCATTGGTCTCACCCATTGGTCTCACCCATTGATCTCAC
Right flanking sequence: Indices 213835 -- 214334
CCCATTGACCCCTTCCCCCTTCGCACTGTTTGTCCCACGGGCGCAACCCGAGTCAACCAATAAAC
GCAGCACGTGACGAGTTTTTCCGGTGGGATGTGACGTTGTAGAAAGTGGGCGCCGCCGCCACCGC
CACCCACCCCGTAGACCCGGCGACCACCGGCGGCTCCACCACCGCCACCGCCACGGGCACCGCCC
GCCACCCCCACGTTCCATTGGCTCGTCACCGCCAGGTTCGCACCAGAAAAATAGAAAAATCCCTC
CGCAAAAGTGTCATCAATAGAGCGAGCGGGGCATATGAGTAACGAAGACACGGGGAGTACCACCC
CCGCCGCCGCCCGCCCGGCTCCGCAGGAGGTGTTCAGTGGCGGCGCCACCACGTCGCAGCACGTG
GACGCCCACGACGACGAGCACTTCGAAAACACCACCTTCAAGCTCAAACGCACCCGGTCGCTCGG
GTTGTTGGACGAGTTCATCGACCCGGACAAGCAGGCGGAGCGGAT
Found at i:215262 original size:3 final size:3
Alignment explanation
Indices: 215254--215284 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
215244 CTTGGACCTG
*
215254 GAC GAC GAC GAC GAC GAC GAC GAC GAG GAC G
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC G
215285 GCGGGTTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.29, G:0.39, T:0.00
Consensus pattern (3 bp):
GAC
Left flanking sequence: Indices 214754 -- 215253
GCCAGCGCACGGCGACGCTGAAGGTGGCGGGCGACATCCTGTTGCCGCGGCAGTCGCCCAAGGAG
CTCAAGCCCATCCTCAAGCGGCGCACCGCCGCCCAGCTGATCATCCTGCACTCCAACTTGCTCAA
GCTCGAGCTCGTCACCAACAAAATGTACCAGCAGCAGCGGCAGGAGTACCAGCAGCGGGTGGCGG
CGATGAAGAACGCGCCCAAGCCCGAGTTCTTTGACTACGACGCCATCCTGGGCCGCCTCAACAAA
CAGTACCACCAGGCGGCGGGCCCGCTGCTGAACTCGCTGCTCACGCGCATCCAGGAGCTACTAAA
CAAACCCAAGCCGCCGGCGGTGCCCGAGGCGCCGGCCGAGCCGCGGGCGCCGCTGGAGGCGCTGG
CGCCGCGGCACATCCGCTTCAACGAGCTGGTGGAACAGTGCCAGGCGGTGGACGGGTACCTGGAC
GACGAGTTCCGCGGGCCCGCCACCCAGGCGATCTACTTGGACCTG
Right flanking sequence: Indices 215285 -- 215784
GCGGGTTCTTTTTGTCGGTGCGGCCGCTGGGAGGCATGGTGGCCGGGGTGGGTCCTCCCTCCGAC
CTGGAGCTGGAGCGGCTGGAGGCCACCCTGGGGCTGCGGCGGCTGCTGGTGCAGACCATCCAGCG
GTTGGCGCCCACCACCATCAACTACGGGCTGCTGGAGGAGGAGCTGGACGACGACAACCCCTACA
CGCTGCTGATGAGCCACAACGCGCTGGAAAACCGCGGGTACGACTACTACTACGACTACAACCGG
GTCTACACCAACGACTTGGCCGGCGTCAAGACCCCCGAGGTGGTGGACATCCCCGAAAGCCTCAA
CTTGGAGTACGAGGACGAGGCGATGCCCCCGTTGGCGCTGCCGGTGGTGCTGCCGGTGGTGATGC
CCTCGCGCCCGGCGCCGCTACCGCAGGACCCGGACTCCGCCCTGGACTCCGACGACGGCCTTTCC
ATATCTGCGCCCAACTCGTCCAAGGACTTGGCGCAGCTGGTGTTT
Found at i:215663 original size:12 final size:12
Alignment explanation
Indices: 215646--215675 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
215636 CCCCGTTGGC
215646 GCTGCCGGTGGT
1 GCTGCCGGTGGT
215658 GCTGCCGGTGGT
1 GCTGCCGGTGGT
*
215670 GATGCC
1 GCTGCC
215676 CTCGCGCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.27, G:0.47, T:0.23
Consensus pattern (12 bp):
GCTGCCGGTGGT
Left flanking sequence: Indices 215146 -- 215645
CCGCGGCACATCCGCTTCAACGAGCTGGTGGAACAGTGCCAGGCGGTGGACGGGTACCTGGACGA
CGAGTTCCGCGGGCCCGCCACCCAGGCGATCTACTTGGACCTGGACGACGACGACGACGACGACG
ACGAGGACGGCGGGTTCTTTTTGTCGGTGCGGCCGCTGGGAGGCATGGTGGCCGGGGTGGGTCCT
CCCTCCGACCTGGAGCTGGAGCGGCTGGAGGCCACCCTGGGGCTGCGGCGGCTGCTGGTGCAGAC
CATCCAGCGGTTGGCGCCCACCACCATCAACTACGGGCTGCTGGAGGAGGAGCTGGACGACGACA
ACCCCTACACGCTGCTGATGAGCCACAACGCGCTGGAAAACCGCGGGTACGACTACTACTACGAC
TACAACCGGGTCTACACCAACGACTTGGCCGGCGTCAAGACCCCCGAGGTGGTGGACATCCCCGA
AAGCCTCAACTTGGAGTACGAGGACGAGGCGATGCCCCCGTTGGC
Right flanking sequence: Indices 215676 -- 216175
CTCGCGCCCGGCGCCGCTACCGCAGGACCCGGACTCCGCCCTGGACTCCGACGACGGCCTTTCCA
TATCTGCGCCCAACTCGTCCAAGGACTTGGCGCAGCTGGTGTTTGGAATGACGTCACACTTCCCC
GACACCGCGCCGCACCCGGTGGAGGCGCCGGTGGCGCTGATCAACCCCAACTCGCTGACGGCGCT
GCTCTCGAAGCAGCCGCGCTCGCTGGGGCTGTTGGCGGCGTCGTTCTTTGGCGACGGCGAGCCCC
CACGCTCGCAGTTGCTGTCGTTGTTCTTGGGAGACACCGCGCCCCCGTCGCCGCCGTCGGTGCCG
ATGCCGCCGCACGCAGGCCTCCCGCGGCAGAAACTGGGGTTCTTGTTTGACCTGGAGCTGGATCT
GGACGAATAGATGCATATATAGACCATTAACGAAGCGAAGACCACATCGGCATGCCGACACCGGC
AACGGTGCCTGTGCGCCCGTTGTCGTAAGCGAGCCACAATGCACC
Found at i:216602 original size:14 final size:15
Alignment explanation
Indices: 216580--216608 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
216570 CTACCCGCGA
216580 GCCACGCCAGCCACC
1 GCCACGCCAGCCACC
216595 GCCA-GCCAGCCACC
1 GCCACGCCAGCCACC
216609 CCGTAGCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.59, G:0.21, T:0.00
Consensus pattern (15 bp):
GCCACGCCAGCCACC
Left flanking sequence: Indices 216080 -- 216579
ATATATAGACCATTAACGAAGCGAAGACCACATCGGCATGCCGACACCGGCAACGGTGCCTGTGC
GCCCGTTGTCGTAAGCGAGCCACAATGCACCGCCAGGGGAACAATGCGCGTAGGAGCCTTGGCGT
TCCAGGTGGTTCCGAGGGGGGACACCGTAAGCGGCGTAAGCGGTGGCTTAACCACCAGCACAGTT
GGCGACCGCTGCCCGGCCCGGCAGAAAATGTCTGCGGAGCACCCCAGTGTCCGACATCTGACGAT
ATCACCAGATGCTCCCCACCGCCGCGTGACTCGTATAACCACCCGCAAAACGCGGCAGGGCGAGG
CGAGAGCGGGGAACCGCACCGCGGCAGCGATGGTACGGGCCAGCGTCGTGGCCACGGTGGCAGTC
CGCAGTGGTCCGCGCCCGCTCCGCCCGCTGGCTGGCCGCCGGCGCCCGCTGGCATTGTGTCACCG
CCAATTGTGGGGTCACCCCGGACGCGGCGCCGCCACTACCCGCGA
Right flanking sequence: Indices 216609 -- 217108
CCGTAGCCACCCGGGCGGCCGCGGGCCCGTAACTGTCGGCCGCCGCACCTGCCCCTTACGCCGAC
GGTTGGCCGCTGACTCCGGTAGCCTCGCGGAGTGCGCATAGTCATCGCGCCTGTTTTTCCCGATC
CTCCCCACCTCAGTGCCGACACGAGATGAACGAGGAGCCCCCCGCGCTGGGCGAGCCCATTGGCA
AGCAGAAGCGCACCAACGTCGCGTGTATCCGGTGCCGGCTGCGGCACATCCGGTGTCCCGGCGGA
GATCCGTGTAAGAAGTGCTCGTTGGCCCGTGCCAAGTGCGAGTACGTGGAAGGGGAAAAGAAGAT
CGTGGTGCTGATGAAGTACCTCCTGCGGCTCCACGACGACATTGCCCGGCTCAAGAAGGAGAACG
CCGGGTTGCGCCACCAGTTGCAGGAGCTGCCGCAGCACACCACCCCCGGGGCACCGGCAAAGCCC
GAGCCGCCCGAGGTGATCGACCCCCACCAGGGCGAGGTCATCACC
Found at i:219736 original size:12 final size:12
Alignment explanation
Indices: 219719--219743 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
219709 CGGTTTCGAG
219719 GGAGCTGGTCTC
1 GGAGCTGGTCTC
219731 GGAGCTGGTCTC
1 GGAGCTGGTCTC
219743 G
1 G
219744 TCTTTGGCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.44, T:0.24
Consensus pattern (12 bp):
GGAGCTGGTCTC
Left flanking sequence: Indices 219219 -- 219718
CTGTTGCAGCTGCTGCTGTTTGTATTGGTTGATTTTCATCTTGAGGTACTGCACGGCCTCGGGGT
ACAACTCCTGGAGCTTGTTGTACAACGGCGTCAACTCTTGCATGTCGGGCGGCGGCAGGATGATC
AAGGGGAACTTGACTTTGTTGCCCGAGTTGGGGTCGCCGTGGTACCGGTCGTGTATGTACAGCAA
CACCCCCAAGTTGCAGTGGATCCGCCGGGTGTACTGCTGGTACTGCTCCATCATTTGCTGGCGGT
CGGGCGCCTGCATCTGCGAGAGCGCTTTGGGATTTAGCAACACGTTGTTGTACACCTGGAGCGCC
TTCTTGATCAACTGGGTGTTGATGAGAAGCAAGCACGTGGTGCGTTCTCGGTCGATCTCCAACTC
CGACTTCATGGTGGTGGTATTTGTTTTTCAGTCGCAGTTTCAGGTGGTGACCTGCGTGGAGAACA
ACAGGCTAGGATACACGGCGCAAGCAATTGGGAGACGGTTTCGAG
Right flanking sequence: Indices 219744 -- 220243
TCTTTGGCGGGTGGTGTTTGGGTGGTGCTGGGTGGTGTTGGCCGTGCAACCGTGGCAATGCCTGT
GGCGAACACGGGTACGATGCAAGAGAAGAGCCCGCAGGAATGTGGAGAATGAGCGGGGCTCGCTT
ACGGCGGTGACAGGCGAGACACGGTAGGCTATTTCGGGAGAGTATGCGTTTGGAGGCACAGGTGA
TGGGCGCCGTCAAAGGTGCGTTGCAGGTGGGACGATAATTTGACGCGTGCCAAGGCGGTAGACGG
GGCTGTAGACACCCTGGGTGCGTGCTGTTGGGACCAGTGGCTCCTCACTTTTACTGCTATTTGTT
CAATTTCTGCAAAAATCGTAGTTTTGGCGTGGCGATCGACAACGCAACCTCCAGATCCTGGGGTA
TCAGACTCTGGATGTAGTAGGCGCTCGCGATGGCTGCGATAGCGCTCCCTTATCGTATTCTCCTC
CAAATAAGGTATGCCTACACCACAAACACCACACCCACCTCACCC
Found at i:220246 original size:18 final size:18
Alignment explanation
Indices: 220225--220270 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
220215 ACACCACAAA
220225 CACCACACCCACCTCACC
1 CACCACACCCACCTCACC
*
220243 CACCACGCCCACCTCACC
1 CACCACACCCACCTCACC
* *
220261 TACAACACCC
1 CACCACACCC
220271 CTCCATACCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.28, C:0.63, G:0.02, T:0.07
Consensus pattern (18 bp):
CACCACACCCACCTCACC
Left flanking sequence: Indices 219725 -- 220224
GGTCTCGGAGCTGGTCTCGTCTTTGGCGGGTGGTGTTTGGGTGGTGCTGGGTGGTGTTGGCCGTG
CAACCGTGGCAATGCCTGTGGCGAACACGGGTACGATGCAAGAGAAGAGCCCGCAGGAATGTGGA
GAATGAGCGGGGCTCGCTTACGGCGGTGACAGGCGAGACACGGTAGGCTATTTCGGGAGAGTATG
CGTTTGGAGGCACAGGTGATGGGCGCCGTCAAAGGTGCGTTGCAGGTGGGACGATAATTTGACGC
GTGCCAAGGCGGTAGACGGGGCTGTAGACACCCTGGGTGCGTGCTGTTGGGACCAGTGGCTCCTC
ACTTTTACTGCTATTTGTTCAATTTCTGCAAAAATCGTAGTTTTGGCGTGGCGATCGACAACGCA
ACCTCCAGATCCTGGGGTATCAGACTCTGGATGTAGTAGGCGCTCGCGATGGCTGCGATAGCGCT
CCCTTATCGTATTCTCCTCCAAATAAGGTATGCCTACACCACAAA
Right flanking sequence: Indices 220271 -- 220770
CTCCATACCACCCCTCCACCCACACCCTACGCCTCCTACTCACCACGCCCTGGACCGCCACCGCC
CGCCGCAGCCGCCACGGCCCGCTCCGCAACACCCCTCCCCTATTTGTGCGAAATCGCGCCCTGCA
CAAGCACCGCAATTTATTGACACCACACCATGGACGAGAACTACGACGTAATTGTATTGGGCACC
GGGCTCACCGAATGCATCCTCCTGGGTCTTCTCTCGGTGGACGGCAAGAAGGTGCTCCACATCGA
CCGGCAGGACTTCTACGGCGGCGAGCTGGCGTCGCTCAACCTCTCGCAGTTGTACCTGAAGTTCA
AGCCACTGGGCCAGAAGCCGGAGTTGTCGGGCCGCGACCGCGACTGGTGTGTCGACTTGATTCCC
AAGTTCTTGATGGCCAACGGCGAATTGACCAACATCCTTGTCCACACCAACGTCACCCGCTACAT
CGAGTTCAAACAGATCGGGGGGCTGTACGTGTACCGCGGGGGCAA
Found at i:221837 original size:33 final size:34
Alignment explanation
Indices: 221788--221868 Score: 119
Period size: 33 Copynumber: 2.4 Consensus size: 34
221778 GAACAACCCG
*
221788 GGATGTAGTCGATAGAGTCTAAGGGACAA-CCCTCT
1 GGATGTAGTC--TAGAGTCTAAGGGACAACCCCGCT
221823 GGATGTAGTCTAGAGTCTAAGGGACAACCCCGCT
1 GGATGTAGTCTAGAGTCTAAGGGACAACCCCGCT
*
221857 GGGTGTAGTCTA
1 GGATGTAGTCTA
221869 TAGAGTGCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
33 17 0.40
34 16 0.37
35 10 0.23
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (34 bp):
GGATGTAGTCTAGAGTCTAAGGGACAACCCCGCT
Left flanking sequence: Indices 221288 -- 221787
CCCGACCGGGTGCAGAAGACGGGCCAGCGGGTGATCCGCGCCATGTGTATCCTCGACCACCCGGT
GCCCAACACCCACGAGTTGGACCTGGTGCAGATCATCATCCCCCAGAACCAGGTGGGGCGCAAGA
ACGACATCTACATCGCCGCGGTGTCGCTGGTGCACTGTGTGGTGCCCAAGGGGTACTACCTTGCG
ATTGTCCTGACCATCATCGAGACCGACACTCCCCACGTGGAGTTGGAGCCCGCGTTCAAGCTCTT
GGGCCCGCGTGTCGACACGTTGATGGGGATTGCCGACTTGTACGAGCCCAAGGACGACGGCACCA
AGCTGGGGATCTACTTGCTGAAGCTGTACGACGCCACCTCGCACTTTGAGTCCACTACCGACGAC
GTCAAGGACTTGTACTTCCGCATCACGGGATCGCCGTTGGTGTTGAAGCAGCGCCCCACCGAGGA
GGAGGAGTTGAACGCGTCGTAACTGTGTATCCAATGAACAACCCG
Right flanking sequence: Indices 221869 -- 222368
TAGAGTGCTAAAGGACGTGAACAACCCGTTGCGGGATGTAGTCTATAGAGTGCTAAAGGACGAGA
CCGGTATTGGTGAATGATTTGGTCCTGTATGCGAGTTGATTAATCACGTGGAGAGAAAGAGAGAG
AAACAGAGAAAAGGAAGAGAAAGAGAGAAAGAATGGGAATAGAGGGAAGAAGGAAGAAAAAAGAG
TGAGGAATAAGTACTAAAGTAAGATCATGTGTAGTGGGATTGAAATATGAGTTATTGGTAGATAT
CCACCGTACACTATCCATACTACCCAGCACGCTGCGAAATGTAGTCTATGGTAGGGACGCGCCCT
GTTTGTATTAGCTGCTACTTCTTGGTGCGCTTCGACTTCCACCAGTCAAAGTCGATCAACGCCTG
CATGCACCCCCACTCGGTGATTTTGTTTTGCAACCACACCAAGTTGACGGGCTTGGTCAAGTAGT
CGTTGCACCCGGCCATCAACGCGTTCTGCCGGTCCACCAGCGAGT
Found at i:221999 original size:10 final size:10
Alignment explanation
Indices: 221984--222026 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
221974 TAATCACGTG
221984 GAGAGAAAGA
1 GAGAGAAAGA
*
221994 GAGAGAAACA
1 GAGAGAAAGA
222004 GAGA-AAAG-
1 GAGAGAAAGA
222012 GAAGAGAAAGA
1 G-AGAGAAAGA
222023 GAGA
1 GAGA
222027 AAGAATGGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 1 0.04
9 6 0.21
10 20 0.71
11 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.37, T:0.00
Consensus pattern (10 bp):
GAGAGAAAGA
Left flanking sequence: Indices 221484 -- 221983
TTGTCCTGACCATCATCGAGACCGACACTCCCCACGTGGAGTTGGAGCCCGCGTTCAAGCTCTTG
GGCCCGCGTGTCGACACGTTGATGGGGATTGCCGACTTGTACGAGCCCAAGGACGACGGCACCAA
GCTGGGGATCTACTTGCTGAAGCTGTACGACGCCACCTCGCACTTTGAGTCCACTACCGACGACG
TCAAGGACTTGTACTTCCGCATCACGGGATCGCCGTTGGTGTTGAAGCAGCGCCCCACCGAGGAG
GAGGAGTTGAACGCGTCGTAACTGTGTATCCAATGAACAACCCGGGATGTAGTCGATAGAGTCTA
AGGGACAACCCTCTGGATGTAGTCTAGAGTCTAAGGGACAACCCCGCTGGGTGTAGTCTATAGAG
TGCTAAAGGACGTGAACAACCCGTTGCGGGATGTAGTCTATAGAGTGCTAAAGGACGAGACCGGT
ATTGGTGAATGATTTGGTCCTGTATGCGAGTTGATTAATCACGTG
Right flanking sequence: Indices 222027 -- 222526
AAGAATGGGAATAGAGGGAAGAAGGAAGAAAAAAGAGTGAGGAATAAGTACTAAAGTAAGATCAT
GTGTAGTGGGATTGAAATATGAGTTATTGGTAGATATCCACCGTACACTATCCATACTACCCAGC
ACGCTGCGAAATGTAGTCTATGGTAGGGACGCGCCCTGTTTGTATTAGCTGCTACTTCTTGGTGC
GCTTCGACTTCCACCAGTCAAAGTCGATCAACGCCTGCATGCACCCCCACTCGGTGATTTTGTTT
TGCAACCACACCAAGTTGACGGGCTTGGTCAAGTAGTCGTTGCACCCGGCCATCAACGCGTTCTG
CCGGTCCACCAGCGAGTTCAGCAGCGCCGTGAGCGCGACGATGATCACCGGCGCCCGGAACAAGT
TGAGGTCCAACCGCTCCTCGGGCTTCACCGGCGACTTGTGACTGTGCCACTCCTGGGCAAACACC
CCGATGCGGTTGATGCGCTCCAACCGCCGGATCTCCTTGGTGGCC
Found at i:225268 original size:12 final size:12
Alignment explanation
Indices: 225251--225280 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
225241 GGGACGCGGG
225251 GGGCTGGGACGC
1 GGGCTGGGACGC
*
225263 GGGCTGGGACTC
1 GGGCTGGGACGC
225275 GGGCTG
1 GGGCTG
225281 CTCGGGCTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.57, T:0.13
Consensus pattern (12 bp):
GGGCTGGGACGC
Left flanking sequence: Indices 224751 -- 225250
CTCGTACATTATCTCCAGGATATCAAATAAAAAAACGTATAAACAGAAATTTAAGGGCTAACGTT
AGCACCGTAGGAACCTTGAACGTTACCGGCAGGCAGGTAGGAGCAGCCAACCCACTGGCCGTTGC
AGGCGCTGGCACATCCGACACCGGTGGAACCCTTCCAGATAACCTGAGAGTGGTGGTTAAAGCTG
CCATCCAAGCTCTCGGAACACCAGGCGTCAACAACTTCCTTGGGGCCACCGTAGCCCCACGCGAG
GTTCTCACCGTACTTGCCACCAGAGTGAACCAAGTTGGGAGAGCAAACACGGTTACCGTAGTCGG
CAATGTACTTGGCAGCAGCAGCATCCCAGGTGAAGGGGGCGGCGCCGTGGCGGGCTCTGTAACTG
TTTTGGGTGTCCAAGATCTGCTTTTCCCAGGAGGAGAGGTTGCCGTCATCAGTAGAAGGAGCGGA
AGAGGGGGCGGGGGCAGTGCTGGGCTCGGGAGCCTGGGACGCGGG
Right flanking sequence: Indices 225281 -- 225780
CTCGGGCTGGGCCAGGTCGGTCTGGATAGGAGCCGCGACCTTGTTGTTGTCAGCAGCGATAGTGG
CAATAGCGAGGGGAATGCCGTTCTTGTCGACACGGTCGCCGTTGGGGTTAACGTAGACGGTCACG
GCAGCGTCCTGAGTCTTCTGTTCGTTACCGTTCTTGTAGACGTACTCGACCAGGGTGACGTAGAC
CGTAGCGGCTTGGGCAGCGGTGGCAAGCGCGAGGGCAGCGGCAAAAGTGAATTTCATAATGAGTG
ACTTGGGGTAAGGTTCTCCAATTTCGGTGAGGCGGATAACAGGTTTTTTATATCATTGTGCCATC
TGCCATGTTTGGAATTGACCGCACAGGTTTGGGAAAATAATATCTGCACGAATTTGCCCATTACG
GGTTATTGACAAAAGGATGCGGGCGCGACTGAGCCTTCAATCCTGTGAGGCGCCGAAGCGCGTCG
GTCGCGACACAGAATGTAAACCAAGAAATAAAGAAGCTAGGCAAG
Found at i:249349 original size:8 final size:8
Alignment explanation
Indices: 249336--249363 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
249326 CACGGAACGT
249336 CAACACCG
1 CAACACCG
249344 CAACACCG
1 CAACACCG
249352 CAACACCG
1 CAACACCG
249360 CAAC
1 CAAC
249364 CACCACGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.50, G:0.11, T:0.00
Consensus pattern (8 bp):
CAACACCG
Left flanking sequence: Indices 248836 -- 249335
GGAGCCGCACCTTGACGGTGTCGAACGGCTGGCCCACCAACACCTGGGCGATGCCACCGACGGTG
CCACCGAGCAAGTCCTTGACCACTTGCATGTTGTCCTGCGTGTACGGAGGCTCCTCCAATTCCAC
TGTCATGATTACTGTCGCTTGGAGATGGCTCTTTACTTCCGAGATCCCGCCTATATAAATTTTCG
CCGCGCCTGCGTGCATACAGATGTAGAGCTTAATTCTGACTCTGAAAAGTGGGGACACACCCGGG
ATTTTCCAGGAGAGGCGGCATTGCGCGGAGACGGTTGCGACGGTCGCGGAGCGCGGTGGGGCCAC
GCTCGCCAAAACCCACGCCACCGGCCACAAACACCGGTGGGGGCACTGTAGACTCTCGTCATCAC
CACCGCCCCTCGCCAGCCCGCCCTCGCGTGTCCATCGTGCATATTTTAGATCCGGGTTTAGGCGA
GCCGTAGCAGGCAGACAACTGCAAGCGATGGCGGTCACGGAACGT
Right flanking sequence: Indices 249364 -- 249863
CACCACGGAGCGTGCGCTTATGTATTCGTAAGAACTGAAATGCTAGATTAATGAGACTGGTCCGC
CGCCTGCTGGGCCTGGGCCTGGGCCTGCTGGGCCATGATCAACCCGTCAAACGGGTTCTGGCCGT
TCTTGGCGTAGTACTGGCCCAGGTGGTGCGGTGCCAGGTTCACCGCGAGCCCCGGCGAGAGCATG
GGCGACTCGAGGTTGGGCTTGATCGCCAGCGCCGACGCCCCCAACGTAGCCACCAACGGGGTGCG
CGGCGCCGCCGAGAAGATGGTGGACACCGACGGGATCAGCTGGAGCGGCGGGTGGGTGGTTTCGA
TCCCCTTGTACGACGACACCTCCAAGAGAATGGTGACGTCCTTGGTGGTCTTGGTCAAGTTGGAC
ATCAGCGACCGCACCTCGTTGAGGATGGGCAAGTCTTGCATGATCCCCTTGACATGCATAAACGT
TTGCACAATCAGCTTGAGGAACAAGTTGGTGTCGTCCCAGAACGC
Found at i:291096 original size:21 final size:21
Alignment explanation
Indices: 291072--291150 Score: 124
Period size: 21 Copynumber: 3.8 Consensus size: 21
291062 AGAGAACAAT
291072 GAGTGAAGAACTAGAGTACTA
1 GAGTGAAGAACTAGAGTACTA
*
291093 GAGTGAAGAACTAGAGTATTA
1 GAGTGAAGAACTAGAGTACTA
*
291114 GAGTGAAGAACTAGAGTACTC
1 GAGTGAAGAACTAGAGTACTA
*
291135 GAGT-AGGAACTAGAGT
1 GAGTGAAGAACTAGAGT
291151 CATAGACTAG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
20 11 0.20
21 43 0.80
ACGTcount: A:0.41, C:0.09, G:0.30, T:0.20
Consensus pattern (21 bp):
GAGTGAAGAACTAGAGTACTA
Left flanking sequence: Indices 290572 -- 291071
ATCGACGGCACGGTGGTGCCGCTGAACGCCGCTGCCATCGGCGAGGTGCCCCACCAGGAGATCTT
CCAGGTGGTGCGGACAATGGACCCCGCGGACATGAAGCAGTTCATGTACCACGTCCACAAGCACG
AGCGCGACGGGTGGAAGGTGGTGGGGCTGCGCCGGCTCGACAACCACTCGCAGGTGTTGATCTTG
GCCCGGGACCCCACGGGGGCCCGTAAGCCGCGCGGGTGGGCCAACGGGATCAAGAACGCCTTTGC
CGTGGCTGGGGCCGGTTTCTTGGCCATGGTGGGGTTGAACTTTGCGTTGAAGGAGGAGCACGCAG
CGGTGCCGCCTCCGGTGGTTGCACCGGTGCCGGAGGTGGCTCCCGAGCACACTGTGCCTGTTGAG
CAGCCTGCTGAGCCGCAGCCGCTTTCGTTGGTGTCGCGTCTCTTGTGGGACCACCCGACGAAGTA
GGACAGGACGTACATTGATTAGAAAGCATAAATAAAGAGAACAAT
Right flanking sequence: Indices 291151 -- 291650
CATAGACTAGAGTACTAGACTAGAGTACCAGAATCAGTGTAGAACTAGAGTGTAGAACGAGTGGA
GAACTGAATGCATAATGAAGTGTAGAGCTGGAGGATGTTTATGGGGTTAAGAGCACTTGATAGAT
TCAATACACCATTACTTCGCCAGATTCTTCAATTCGAGTGGGTATTTACTTCTTCTAGTCTATCT
TCTCCTAGTCTATCTTCTTCTATTCTACATCTTCCTCTATATCCCCGTCTTTATCAATCGCGTCT
ACGCGCATCGAAAGTTTCGCAGCCATCACACCATGCTTCCGATCAAGTCGACACTATCGCGGGTC
GGGCGCACGGCACGACACATAGAGCTGCTACAGAAGAATGCAGCGCCGCCTCCACAACCCCGTGC
CGCGACTCCGCTCCCACCGAAGCCGCCGGTGCCCAAGGCCGAGCTCAAAAAGTGGCGGCGCCATC
TAGACCACTATCAGACCAAGGTGTACCGCGACTTCTTGACCCCGC
Found at i:291161 original size:13 final size:13
Alignment explanation
Indices: 291143--291178 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
291133 TCGAGTAGGA
291143 ACTAGAGT-CATAG
1 ACTAGAGTAC-TAG
291156 ACTAGAGTACTAG
1 ACTAGAGTACTAG
291169 ACTAGAGTAC
1 ACTAGAGTAC
291179 CAGAATCAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 21 0.95
14 1 0.05
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (13 bp):
ACTAGAGTACTAG
Left flanking sequence: Indices 290643 -- 291142
GGTGCGGACAATGGACCCCGCGGACATGAAGCAGTTCATGTACCACGTCCACAAGCACGAGCGCG
ACGGGTGGAAGGTGGTGGGGCTGCGCCGGCTCGACAACCACTCGCAGGTGTTGATCTTGGCCCGG
GACCCCACGGGGGCCCGTAAGCCGCGCGGGTGGGCCAACGGGATCAAGAACGCCTTTGCCGTGGC
TGGGGCCGGTTTCTTGGCCATGGTGGGGTTGAACTTTGCGTTGAAGGAGGAGCACGCAGCGGTGC
CGCCTCCGGTGGTTGCACCGGTGCCGGAGGTGGCTCCCGAGCACACTGTGCCTGTTGAGCAGCCT
GCTGAGCCGCAGCCGCTTTCGTTGGTGTCGCGTCTCTTGTGGGACCACCCGACGAAGTAGGACAG
GACGTACATTGATTAGAAAGCATAAATAAAGAGAACAATGAGTGAAGAACTAGAGTACTAGAGTG
AAGAACTAGAGTATTAGAGTGAAGAACTAGAGTACTCGAGTAGGA
Right flanking sequence: Indices 291179 -- 291678
CAGAATCAGTGTAGAACTAGAGTGTAGAACGAGTGGAGAACTGAATGCATAATGAAGTGTAGAGC
TGGAGGATGTTTATGGGGTTAAGAGCACTTGATAGATTCAATACACCATTACTTCGCCAGATTCT
TCAATTCGAGTGGGTATTTACTTCTTCTAGTCTATCTTCTCCTAGTCTATCTTCTTCTATTCTAC
ATCTTCCTCTATATCCCCGTCTTTATCAATCGCGTCTACGCGCATCGAAAGTTTCGCAGCCATCA
CACCATGCTTCCGATCAAGTCGACACTATCGCGGGTCGGGCGCACGGCACGACACATAGAGCTGC
TACAGAAGAATGCAGCGCCGCCTCCACAACCCCGTGCCGCGACTCCGCTCCCACCGAAGCCGCCG
GTGCCCAAGGCCGAGCTCAAAAAGTGGCGGCGCCATCTAGACCACTATCAGACCAAGGTGTACCG
CGACTTCTTGACCCCGCTCGGAATGGACAACCTCAAGGTGTTCAA
Found at i:291372 original size:15 final size:15
Alignment explanation
Indices: 291329--291372 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
291319 TGGGTATTTA
291329 CTTCTTCTAGTCTAT
1 CTTCTTCTAGTCTAT
*
291344 CTTCTCCTAGTCTAT
1 CTTCTTCTAGTCTAT
*
291359 CTTCTTCTATTCTA
1 CTTCTTCTAGTCTA
291373 CATCTTCCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.14, C:0.30, G:0.05, T:0.52
Consensus pattern (15 bp):
CTTCTTCTAGTCTAT
Left flanking sequence: Indices 290829 -- 291328
TGCCGTGGCTGGGGCCGGTTTCTTGGCCATGGTGGGGTTGAACTTTGCGTTGAAGGAGGAGCACG
CAGCGGTGCCGCCTCCGGTGGTTGCACCGGTGCCGGAGGTGGCTCCCGAGCACACTGTGCCTGTT
GAGCAGCCTGCTGAGCCGCAGCCGCTTTCGTTGGTGTCGCGTCTCTTGTGGGACCACCCGACGAA
GTAGGACAGGACGTACATTGATTAGAAAGCATAAATAAAGAGAACAATGAGTGAAGAACTAGAGT
ACTAGAGTGAAGAACTAGAGTATTAGAGTGAAGAACTAGAGTACTCGAGTAGGAACTAGAGTCAT
AGACTAGAGTACTAGACTAGAGTACCAGAATCAGTGTAGAACTAGAGTGTAGAACGAGTGGAGAA
CTGAATGCATAATGAAGTGTAGAGCTGGAGGATGTTTATGGGGTTAAGAGCACTTGATAGATTCA
ATACACCATTACTTCGCCAGATTCTTCAATTCGAGTGGGTATTTA
Right flanking sequence: Indices 291373 -- 291872
CATCTTCCTCTATATCCCCGTCTTTATCAATCGCGTCTACGCGCATCGAAAGTTTCGCAGCCATC
ACACCATGCTTCCGATCAAGTCGACACTATCGCGGGTCGGGCGCACGGCACGACACATAGAGCTG
CTACAGAAGAATGCAGCGCCGCCTCCACAACCCCGTGCCGCGACTCCGCTCCCACCGAAGCCGCC
GGTGCCCAAGGCCGAGCTCAAAAAGTGGCGGCGCCATCTAGACCACTATCAGACCAAGGTGTACC
GCGACTTCTTGACCCCGCTCGGAATGGACAACCTCAAGGTGTTCAACGACCCCGAGCCGTTCGAC
GCGGTGTCTGCGCACGCCAAGTGGCGGCGGCTGGCGGACCCCTCGCCCAAACAGCAGTTCCACAA
CTACTTGGAGGAAAAGACCAAGTTCGAGCAGATGGCGCTGATGCTCATCGACAGCTTCCCCAACG
ACCTCAAGAACGTCGACTCGCCCGCGCGGTTGGCCCGCACGTTTG
Found at i:298197 original size:20 final size:20
Alignment explanation
Indices: 298139--298209 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
298129 ATGATAAGGT
298139 GAGG-TGATGGGAGATGAAA
1 GAGGATGATGGGAGATGAAA
* *
298158 GAGAATGACGTGGAGATGAAA
1 GAGGATGATG-GGAGATGAAA
*
298179 GAGGATGATGGGAGTTGAAA
1 GAGGATGATGGGAGATGAAA
298199 GAGGATGATGG
1 GAGGATGATGG
298210 TAAATGATCA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.07
20 24 0.53
21 18 0.40
ACGTcount: A:0.37, C:0.01, G:0.45, T:0.17
Consensus pattern (20 bp):
GAGGATGATGGGAGATGAAA
Left flanking sequence: Indices 297639 -- 298138
GTGAGGTAATCAATCATGATGCCAAATTTGACGTATTTGTTGCAGCCGGTGTCGGGGTTCGGGGT
GAGTCCCTGGCGATACATCTCGATCATCGGCGCAAACACGTCCGTCCAGTACTCGGCCTCGAAGT
TGACCCGGTCACACCGCATGTCTAGCTGGGCACACACCTTTTTGACGTCGTTCCAGTCGTCCTCG
GTGCAGCGGGCGGTTTGCGACCAGTTGGCCATATAGATGCCTCGTACGTTGCGGTACCGCTGGCG
ACAGAGCGCTGCGGCGACCGACGAGTCTACCCCCGAGCTCATCGCTACCACCACCTCGTCGTCGG
GACCGGGCTCGCTCTGGGTGTACACGGCCGGGTCCACGGGGTTGGTGAGTGTGAGCGACTTGGCA
AGCTTATCGGCCAAAGAAGAGCCATGTCGCCGTAGATTTAGTGGCACCCCGAGACGTGATCTGAG
CATTCGGTTACTAACGGTTTTTTCGTGCGGCTCAGATGATAAGGT
Right flanking sequence: Indices 298210 -- 298709
TAAATGATCACAACAATACTGTTTCGGAGCGGAGTGTGTGACGTGGGAAGACACTGAAAGTAGCG
TAGCAATCAGCATCAGAGAACAGCTGATTGTCCTTTGGCGTACACTCAAGGTCAAGAGCCTTGAA
AGCATGCTAGATCCGCTGGAACTACACTTATCCCGCTGGGCCGCTCACAGTGGCCGTGTTTCATC
TCTCGCATCGGCCTTCCCCCACACCGGAGGCGATCTCGGAGTTCGGAGTGCACTGAGCGCGATCT
ACACCGAACTGGCCACCACCAACAATAGCGGGGCGTCTAAATACCCCACACAAACCACCAGTAAG
CCACTCTTCTCTCTTCTCACCACCTAAAACTCGTTTTCGCCGTCCTCGTATCCGCTTCCGGCCCC
GTCCGCAGACTCGGGACCCGTGGTGAAACTGACTCCGACCAACGGTTCTCCCCGCCGTAAAGCGG
CATCCTCTTTCCCACACCCATCTCCACCCACCTGCTCCCCAAACG
Found at i:310050 original size:9 final size:9
Alignment explanation
Indices: 310036--310080 Score: 81
Period size: 9 Copynumber: 5.0 Consensus size: 9
310026 TGTGCCTCCT
310036 CGTGGTGGC
1 CGTGGTGGC
310045 CGTGGTGGC
1 CGTGGTGGC
*
310054 CGTGGCGGC
1 CGTGGTGGC
310063 CGTGGTGGC
1 CGTGGTGGC
310072 CGTGGTGGC
1 CGTGGTGGC
310081 TTCAGAGGCG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.00, C:0.24, G:0.56, T:0.20
Consensus pattern (9 bp):
CGTGGTGGC
Left flanking sequence: Indices 309536 -- 310035
GTGCCTCGTCGCACAAGGTGTTTGTGCGCCCCATCGGCTTCAACACCCGCTACGAGGACTTGGAG
GACCACTTTGGCTCCGTTGGCAAGATCGCCAACATCCAGCTCATGCGTGGCTACGGGTTTGTCAC
GTTCGAGACTGCCGACGAGGTGGCCGCTGCGGTGGAGAAGTTGCACGACTCCGAGCTCATGGGCG
AGCGGTTGGTGGTTGAGGCTGCCCAGCCCCCCAAGGAGGACAACCGGGGCAAGTTCCGGGCTAAG
GTGAGCAACATTGCCAGCGGCACCGCGTGGCAGGACTTCAAGGACTTTGTCCGTGACAAGACCGG
GTCCGACCCCTCTTTCGTCAAGGTGTACCGTGACTTTGACTCTGGTGAGCACCTTGGTGCCATCG
AGTTTGCTTCCCAGGACGAGCTTGACCGTGCTCTCCCCATTATTGACGGCAGCGAGTTCAACGGC
ACCACCATCACTGCTGTTGTGGACGACTCTCCCTATGTGCCTCCT
Right flanking sequence: Indices 310081 -- 310580
TTCAGAGGCGACCGTCGTGGTGGTTTCCGTGGTGGTCGCGGCGGTGGTGACCGGGGCTTTGACAG
ACGTGGTGGCTTCCGTGGCGGCGACCGTGGTGACCGTGGTGACCGTGGTGACTACCCTCCCAGAG
ACCGCTACCGTTCCGGCGACCGTGACGGTGGCGACTACGGGTACGACAATGGCTCGAGAGGCTAC
GACCGGGACAGATCGCCTACTAGATATTAAGCGGGCATAACCTATTTGTATGATTACTTGGAACA
AAAAACTACCATTATTGTAAGGGGATTGTGCAACGTGGATGCCCAGTATATAGTGGGGTGCCAAG
GCACCCGTCGTAGGCCGTAGCAGTGGCGTGGTGCCACAAGTGGAAACGACCAGTGGTGTGTCTGA
GAGTGGTTGCTACTTTAGTTGAGTGTTTTCTCTATTCACTTCTATTTCTGTCTTATATTGCAGTA
GCCATGAGGCGCGAGGAAATATCCCTGTGTGCATGTCAGTGGTCT
Found at i:310180 original size:9 final size:9
Alignment explanation
Indices: 310168--310197 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
310158 CCGTGGCGGC
310168 GACCGTGGT
1 GACCGTGGT
310177 GACCGTGGT
1 GACCGTGGT
310186 GACCGTGGT
1 GACCGTGGT
310195 GAC
1 GAC
310198 TACCCTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.13, C:0.23, G:0.43, T:0.20
Consensus pattern (9 bp):
GACCGTGGT
Left flanking sequence: Indices 309668 -- 310167
TCGAGACTGCCGACGAGGTGGCCGCTGCGGTGGAGAAGTTGCACGACTCCGAGCTCATGGGCGAG
CGGTTGGTGGTTGAGGCTGCCCAGCCCCCCAAGGAGGACAACCGGGGCAAGTTCCGGGCTAAGGT
GAGCAACATTGCCAGCGGCACCGCGTGGCAGGACTTCAAGGACTTTGTCCGTGACAAGACCGGGT
CCGACCCCTCTTTCGTCAAGGTGTACCGTGACTTTGACTCTGGTGAGCACCTTGGTGCCATCGAG
TTTGCTTCCCAGGACGAGCTTGACCGTGCTCTCCCCATTATTGACGGCAGCGAGTTCAACGGCAC
CACCATCACTGCTGTTGTGGACGACTCTCCCTATGTGCCTCCTCGTGGTGGCCGTGGTGGCCGTG
GCGGCCGTGGTGGCCGTGGTGGCTTCAGAGGCGACCGTCGTGGTGGTTTCCGTGGTGGTCGCGGC
GGTGGTGACCGGGGCTTTGACAGACGTGGTGGCTTCCGTGGCGGC
Right flanking sequence: Indices 310198 -- 310697
TACCCTCCCAGAGACCGCTACCGTTCCGGCGACCGTGACGGTGGCGACTACGGGTACGACAATGG
CTCGAGAGGCTACGACCGGGACAGATCGCCTACTAGATATTAAGCGGGCATAACCTATTTGTATG
ATTACTTGGAACAAAAAACTACCATTATTGTAAGGGGATTGTGCAACGTGGATGCCCAGTATATA
GTGGGGTGCCAAGGCACCCGTCGTAGGCCGTAGCAGTGGCGTGGTGCCACAAGTGGAAACGACCA
GTGGTGTGTCTGAGAGTGGTTGCTACTTTAGTTGAGTGTTTTCTCTATTCACTTCTATTTCTGTC
TTATATTGCAGTAGCCATGAGGCGCGAGGAAATATCCCTGTGTGCATGTCAGTGGTCTCGTACGG
GCTGCACCCGCTTCAGCAGATCAAGGTGTTTGCGTACGATCCGGCGGTGACCAAGCTGGTGATCT
TTATTCACGGCGGGGCCTGGCGCGACCCAAACAACACCTACGACG
Found at i:325485 original size:12 final size:12
Alignment explanation
Indices: 325468--325492 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
325458 TTCTTGAAAC
325468 ACATCAATAAAT
1 ACATCAATAAAT
325480 ACATCAATAAAT
1 ACATCAATAAAT
325492 A
1 A
325493 GAGTTGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
ACATCAATAAAT
Left flanking sequence: Indices 324968 -- 325467
GTCACTTGCCCTTCTGCAAGACTATGACTTTGGCTCAGTTGAACCCCATGTACCACATCAAGGGC
AAGAAGAAGTTTGAGTTGAGCGAGAAGGAAAGGGAAGAGTTGTTCGCCCGGGTTAAGGAGCAGGA
TCTCGCAGCTGGACAGGATGACTCGACCCCCATTACCGATACGGCCGCCCCTGAGGAGAAAGTGC
AAGATCTTCAAGAAGTTAAAAAGGTCTCGACCACATCGCTTTCTTCAGTCCTGGCTGCCCACGTG
CAAAGCAAGTAGTTGCTTCTACCTCCGTTACCACATTTTATTGTTTGTTTGATTTTTCATTTCGT
TTACTTGTCATAGAGGGGGCCGAGTTGTCAGGGTTTGGATCGACACACACACACACACATTTTTG
ATATATTCAAACCCCGGTGGCTCGGCTTTTTTTGTGACTTAGGATATAGGGATATTAATAAACGG
GATTCTCATTACTACAGTTGATTTGAATAGATAACTTCTTGAAAC
Right flanking sequence: Indices 325493 -- 325992
GAGTTGGAAATAAATCACTTCTTCACGTTACCAACGATCTCGATGATCTGCTGCACAACCTGGGG
GTTGGACAAGGTCGAGATGTCACCCAACTGGTCGGACTCGCCGGCCAAAACCTTTCTCAAGATTC
TTCTCATGATCTTACCGGATCTGGTCTTGGGAAGGTCGTCAACCAACAAGATCATCTTGGGGGCG
GCGAAAGGACCAATCTCCTTTCTGACAGTCAACACCAACTCCTTCTTGATGGCGTCAAGGTCCTC
CTCGGGGATGTCCTTGTTCTTGAGCGACACGTAAGCAGCGACGGCCTGACCGGTCAAGTCGTCAG
CGTAACCAACAACAGCGGACTCACCAACCAACTCGTGCTCGATGAGGGCAGCCTCAATCTCAGCA
GTGGACAAACGGTGACCAGAGACGTTGACGACATCGTCGACACGGCCGAGAATCCAGAAGAAACC
GTCCTTGTCACGGGCAGCACCGTCACCGGAGAAGTAGTAGCCGGG
Found at i:334808 original size:13 final size:13
Alignment explanation
Indices: 334792--334820 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
334782 GTTCTCCGTG
334792 CCCAATCTCCATC
1 CCCAATCTCCATC
334805 CCCAATCTCCATC
1 CCCAATCTCCATC
334818 CCC
1 CCC
334821 TCTTCAGACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (13 bp):
CCCAATCTCCATC
Left flanking sequence: Indices 334292 -- 334791
ACCTCTTTCCGGTGGAGCATCGTGCGGTCGTAGATCAGAAACCCCGTGATCTTGAACTCGTAGGG
ACAAGTCAGACAGTAGAACTTGTTCTGACCGTCGTCCCCAGGAGCTATGAGCAACATGTTGCTGC
AGTTGGGGCAGAAGGAAAGCATGGGCCACGGGTGTCACTGGGGTGCATCATCGTTATCATCGCGT
GAAAAATCGAGCCGCACGGAGGTCGGGGACGGGTTTCGGGAACAAGCGAGGTGACGAGGAAGGTG
GGGCGAGTGAGAAGACTGTTTAGTGATTTGCTACGATTGGGTTTTCCAGCTAGCTTGTGTCTGTT
TTAAGCGTGTTTGTGAGCCTGTCTCTGTGCGGCTGATCTAGGCCATCAAAGGTGTGCTTAGCCCG
ATCTGGTGACAATCGACCGAACTCAAACTTGGGGAGTAAAACAACTAGTCTGGTTAGCCTGTGTG
AACACTCTAGATCGATTCAAACCTACCCTTTCCCAGTTCTCCGTG
Right flanking sequence: Indices 334821 -- 335320
TCTTCAGACGCGCGATCGCCTGCATCACCTCTACTCAACCACAGACAATGGAGAGCACCAATTCT
CCACGACGGAAACCCGACGCGTCTCCATCCAAGCGCGGGCCCGTCGGGTTGCTTCTGCCCCAGAA
AAGGGGGCCGGGTCGCCAGGGCCGGTGGCTATCGGCAAGCCCGAGGCTCGAACGGTCGTCCTCCG
TGGGTGAGGAGTGGCCTCCGCGACACTTCGAAGAGGAGGTGGTGGCGGAGCAGCCTCTGCCCAGC
AAGCGGCGCAAACGCCGGGCGGTGGAGCCCGAGGAAGTGGTGGAGGTCGAGACCGTCACCACGAA
GCGCGGCCGCCAGGTGAAAAAGACCAAGGTGGTGGACTCGGGCAGCGACGACGACGACGACTTCG
ACCAGAGCCACGACACCGACGCGGAGGAGGAGGAGGAGGAGGAAGAGGGTGATGACATAGAAGAA
GACGACGACGATGATGACGATGTCGTTCTCGACGAGCCCGAAGAG
Found at i:337021 original size:13 final size:15
Alignment explanation
Indices: 336988--337038 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
336978 CAACGATCCT
336988 AGACAAAGGTCTAAGG
1 AGAC-AAGGTCTAAGG
337004 AGACAAGGTCT-A-G
1 AGACAAGGTCTAAGG
*
337017 AGACAAAGTCTAAGG
1 AGACAAGGTCTAAGG
337032 AGACAAG
1 AGACAAG
337039 ACTTAGGGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 11 0.35
14 2 0.06
15 14 0.45
16 4 0.13
ACGTcount: A:0.45, C:0.14, G:0.29, T:0.12
Consensus pattern (15 bp):
AGACAAGGTCTAAGG
Left flanking sequence: Indices 336488 -- 336987
AACTGGTTGTGGCACAACGTCACCACCTACGAGCCGTACCTGGTGGAGTTGCTGTTCCGCGACGT
GGTCACGTTGGGCCACTCAAAGACGTTTGGCGGCGGGCTGGGTGCCAAGTACGTGCTCAAGTCGC
TTTCGCCGCTGGCCCGCGGTGTCTACAAAATAGCCGTGGAGCGCCAGTTGGCGATCATGGCGGAC
AAGGGGGCCAAGACCGGGGCGCTCAAGTGCTCGATGGCGTTTTCCGACCTCTTTGCCGAGTGTCT
GGCCCAGATGGTGGTGTCGTCGCAGCTCCAGTTCCGCACGTTGCTCAAGGAGTTCCTTGACCACA
AGATGCTCAAGTTGGTCACCGACAAGCTGGGTGACGAGCGCATCTACATTCCCTACACCATAGGC
GAGATCCAGAAGCTCCAGCTGGAGACCGCGTAGTATTAGCATTGCCGCCAAGTCGGCTGCCCTGT
GGGCGTACATAATAATAGAACAATAAGATTAACGTCAACGATCCT
Right flanking sequence: Indices 337039 -- 337538
ACTTAGGGAAACAAAGGGTGCGCGAGTTCGCACAAGTGTTCTGGTGGCACTAACTATACACTAGT
AGTCGTGCGATCTGCGCGTAGGTTGCGATCGGTCGTTTGGCCAACCGACCTTCGCTCGAGTACAC
CTGCCTGAAACACGAGACGGTATCGAGTTGCTCCAGATTAGGCGGCCCTCCCGAGCCACGAAACA
AGCAATCCCACACGCCGTCAACGCGGTCTACAAAGCCCCAGCACGCTCCCTATCCCCCATCCAAA
GAGGCGCAGGCTCCCCCTTGGGCAGGGTCTGCGTGCGCATGCATTGGACGCGGGGCACTGGTTGG
TTGCCACATGCGGCCGCCGATCAACGCCAATTGGCGCGGTCACCGGTAGCAAGCGTTTGGCGGCG
CCGCCACCACCCTTCGTAGCCACCCCCGCCGTCTCGTGGCACCCGTATCCGGTGCCTGATCGTTT
CTCGCCTATATGCAACATTACCAAACCCGAGATTGACAGCGCGGC
Found at i:339713 original size:12 final size:12
Alignment explanation
Indices: 339698--339759 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
339688 GCCGCAGACG
339698 CAGCCGGTGGCC
1 CAGCCGGTGGCC
*
339710 CAGCC-GTTGCC
1 CAGCCGGTGGCC
339721 GCAGCCGGTGG--
1 -CAGCCGGTGGCC
*
339732 C-TCCGGTGGCC
1 CAGCCGGTGGCC
* *
339743 CAGCCCGTAGCC
1 CAGCCGGTGGCC
339755 CAGCC
1 CAGCC
339760 ACAGCCGCCC
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
9 7 0.18
10 1 0.03
11 6 0.15
12 22 0.56
13 3 0.08
ACGTcount: A:0.10, C:0.44, G:0.35, T:0.11
Consensus pattern (12 bp):
CAGCCGGTGGCC
Left flanking sequence: Indices 339198 -- 339697
ACTTTGTCGACCCAGCAGCCCTGGCGCGCCAGCACTCGCACCCGAGCTCGGAAGGGTCTCGAACG
CCGCCCGACGGGCCCAGCCGCAAGTCGCTGGCGCTGGACAAACGCGGCGGCGAGTACAGCAACAA
GGAGGCGTGGGAGCTGCGTACGCACCTGGCCAACCTCACCGACGAGGCCGGCAAGCTCGCGGACG
ACATCTTTGCCGGACCGCTGCTGAGCCACCACCTGATGAAGTCGGTGGGGTCGCAGTACGACGCG
GTGGAGGAGCTGGACGAGTTTGAGTTCGAGTCGGCAGTGGTGCTGCGGTACCCGGACGTGCCCGA
CCTCAAGGACCTGCCGGCGGCCCCGGCGCTGACGTCGCCGCCCAGGCTGCCCGAGCCCGCGTTGC
CCATCCATTCGCATGTCCCGCCGCAACTGGCGCTTCCCCCGTTGCCCAACGTGCAACAGCCCGTC
CCCCAGCATCCCAAGAACAAGCCGCCGCCGCCGGTGCCGCAGACG
Right flanking sequence: Indices 339760 -- 340259
ACAGCCGCCCCAGCCGCCGCTGCAGCCGTTGACAGTGCCGCAGCCGGTGGCCATCCCGCAAATGG
CGCCGCCGCAGGTGTCGGCCGCCACCCAGGTGTCGCCGCGGTCGAACAACCCGTTCCCGTTCACC
CCGTCGTCGCAGCCGTCGCAGCCGCCGGCGGTGGTCCCGTACGACGTGGCGTCCGCGTCGCCGGC
GGTGCCCACGGAGCGCCCGCAGCGGAGCTCGCTGGCCAAGAAGAGCGCCAACCCGTGGGGCGAGT
ACCAGCGGCCCAACCTGGTGCTGAGGATGAAGCTGAGCCTGCTGGCGCAGGAGCTGCTGCCGATG
TTTGCCGGGATGGCGCAGGTGGACGAGCAGAACCTCATCGACTTGGACTTGGGCGACGCGGTGCC
GCTGAGCCAGCGTGCCAAGCGGTCCAGCGACGAGGGGTCCGACCTCGAGACCACCAAGAGCCGCG
AGAACCATACCAAGCTCAAGCCGAAGCGGTTGCTGTCGATCCCCG
Found at i:352957 original size:36 final size:36
Alignment explanation
Indices: 352916--352994 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
352906 AATGGGGTCT
*
352916 ATGGCGATTGGTTTGTTCTGGTCCGGCAAAGACGGC
1 ATGGCGATTGGTTTGTTCTGGTCAGGCAAAGACGGC
*
352952 ATGGCGATTGGTTTGTTCTGGTCAGGCAAAGATGGC
1 ATGGCGATTGGTTTGTTCTGGTCAGGCAAAGACGGC
352988 ATGGCGA
1 ATGGCGA
352995 CGGGTTCAGC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.19, C:0.16, G:0.37, T:0.28
Consensus pattern (36 bp):
ATGGCGATTGGTTTGTTCTGGTCAGGCAAAGACGGC
Left flanking sequence: Indices 352416 -- 352915
ACAACATGATCCGTCGCGGGCATGGTAGCCGTGCCAAGTGCTGTAACACCTTGTTCGTCGGCAGT
TTGAGCCGGTGGCCCTCGTCGCAGACCACCATGTCGATGGGACAGCCCTGGAGCTGCTCGAAATA
GCCAGGGATCTTCTCGTAGTTGACCACAAGCACCTGGTACACGTTGAGGCGGCCAAAGCTGACGA
TTTGCAGGTGCTGGCTGCCGTCGGTGACTGAGAGCACCAGGACCCGGGGGCCGAGCCACTTCTTG
AACTCGGCCACCCAGTTGGACACGAGCGTCACCGGACAAACTACCACGATTTTGGATACCTCCCG
GGTTTGTTTGAGGAGGGTCCACACAAGGGTGATAACTTGGAGGGTCTTGCCGAGACCCATCTCGT
CTGCGAGCAAACAGCCCCGCCCCGCGTCACGGAACCCCATCACCGCCTCGTACATGAACCGGACG
CCCTCCACCTGGTGCGGGCGCAATTTGTTGGCCAAAATGGGGTCT
Right flanking sequence: Indices 352995 -- 353494
CGGGTTCAGCGGGTGCCGGCAGGGGTTCCAGCACCGTCTCTGGTTGCGAGGGGACAAAAAGCTCT
GGCTCTGGTTCCACGACCTCAGGGGCCTTTGGAGCCACAGCGGGCGCGGAGTCAACCAAAACTAC
GTCGTCGTCGTCTATCTCAAACTCGTAGCCCCCTATAGCCACCACCCCCCTGAGGAGGTCCTCCT
TTGCTTGCTGGAACTGCTTGCGAGACATCACGTGGCCGTCGCTGCCTTTGAGCACCACCACCACC
AGCTCGCCCAGCTTCGTTGCGATGACGGACCCGTCTCCCTCCCACGTCTTGTTCTTCTTGTTGCT
CTTTTTGCGCCACTGGACCGCAAACCGCTGGCCCTCCTCAGACGATGGTGGGGTGGGTGCGGTTA
CCGGGGCTGGAGCGGGTACCACCACTGGCAGCGGACGAGGAGCGGTTCTCACCAACCCCACACGG
CGTCTGACGGGCCCAGGAGCCCGTTTAGCGACCTTGGCAACTTCA
Found at i:368741 original size:9 final size:9
Alignment explanation
Indices: 368726--368762 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
368716 TGAGGACTTG
368726 GAGGGCGAA
1 GAGGGCGAA
*
368735 GAAGGCGAA
1 GAGGGCGAA
368744 GAGGGCGAA
1 GAGGGCGAA
368753 GAGGGCGAA
1 GAGGGCGAA
368762 G
1 G
368763 GATCCGACGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.35, C:0.11, G:0.54, T:0.00
Consensus pattern (9 bp):
GAGGGCGAA
Left flanking sequence: Indices 368226 -- 368725
CCGGCGACGACAACGACGACGCCGAGCCCCAGATGGAGGAGTTTGAGTTTGACCACGACCGGTAC
CGCGAGGACGAGGTCGAGTTTGCCGAGGACTCCGACCTCGAGGACTTTGTGCTGGTGGCCCAGCG
GCTCCAGGGCACCGGCAAGCGGCGCTACGACTTGAACAAGCTCATCTACGAGCCCACGGTGTCTC
CCGCGGACGTCATCAGCCGGTGGCGGGGCGACGAGGTCGAGGGCGAGGAAGAGGACATCGAGGAG
GACGACGACACCTTTTTCAAGCAGAAGCAGCAGGCGGACGCCGCCAAGTTGGCGGCCAACACCGA
GTTCCCCAGCGTGGAAATGTTGCGCGAGATGTTTGACGCCACCAACGACGACGCCGAGTACGAGC
TGGGGTACCAGTTCTTGAAGCTGCGGTTCCTCGTGGCCCCGAAGATGACCGACGAGGAGGCCAAG
GCCAAGGGCGACGACGAGGAGGTGTACGGCGACTTTGAGGACTTG
Right flanking sequence: Indices 368763 -- 369262
GATCCGACGATGGCGAGGACGAGGCCATGGACTCTGCTGACAAAAAGGACGACTTTGTCGACTTT
GAGCAGGAGGAGATCAAGGACGAGTTGGCCGAGCCCGTGCTGACCGAGGAGGCCCGCAAGCTCAA
CGCCGAGAAGAAGGCCAAGCTCAAGCTCCAGTTCGAGGACGAGGAGGACCGCGAGTTTGGCGCCG
AGGACTTTGAGAACGACACCGAGACGTGGTACGAGATGCAGAAGAACAAGATGGCCAAGCAGTTG
GACATCAACAAGGCGGAGTACGAGTCGATGGACCCCGCGGCCCGGCTCAAGATCGAAGGCTACCG
CGCTGGCTCCTACGTCAAGCTCGTGTTCCGCAACGTCCCATGCGAGTTCATCGAGAACATGTCTC
CCGAGTACCCCGTGATCGTCGGGGGGTTGTTGCCCACCGAGCTGCGGTTTGGCATCATGAACGCG
CGGATCCGGCGCCACCGGTGGCACAAGAAGATCCTCAAGTCCCAG
Found at i:370558 original size:17 final size:17
Alignment explanation
Indices: 370509--370560 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 17
370499 CACAGATTGA
* *
370509 CTTTAATTGCACACCCT
1 CTTTAACTGCACACCTT
370526 CTTTAACTGCACACCTT
1 CTTTAACTGCACACCTT
370543 CTTTAACTGCACACCTT
1 CTTTAACTGCACACCTT
370560 C
1 C
370561 ACTTATTGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.23, C:0.37, G:0.06, T:0.35
Consensus pattern (17 bp):
CTTTAACTGCACACCTT
Left flanking sequence: Indices 370009 -- 370508
GCAGTCCTACATGAACAAGCGGGCGGTGGTGTTGACCCAGGAGGAGAAGAAGGAGCGCGACTTGT
TGAACAAGATTGCCATGGTGCGCAAGGAGAAGGAGCAGAAGCGCAAGGCCAAGAACGACGCCAAG
TTCAAGGACAAGTTGAAGCTGTTGGCCAAGGAGGAGGAGATCAAGAAGGACAAGGACCGCGAGCG
CAAGAAGGCGTACTTCCAGAAGGAGGCCCGCAAGGCGGGCGGTGGCGAAGCCGGCCCCCCTCCCA
AGCGGTCGAGAAGATAATTATAGAATACACAAAGAAGAGGGTAGAGATTATGGAAGGGGCTTGGA
ACGAGTTGCTCTAAGCATAAATCGATCGGTTTGAGCCTGCTTCAAAACTGAGCATTAAGAGTCGA
TTGGTGTAAGCTTAGCATCAGTCGTTGCGACTGATTGTAGAGTGCGAGCGTGGCACAAGACAGGC
AAGACCACAGGTTAAGTCATTGTAAGCTGAGTCGACACAGATTGA
Right flanking sequence: Indices 370561 -- 371060
ACTTATTGCTCATCCTCTTGCTTCTGATTTACTCGGTGCTTCAGTTTCGGTTTGCAGCACTGGCC
TGTCGCAAATTACCGCATTCGGCCACCATTAACTTCTTCACACCAACACCCCATTTTACCCTACT
TCACTAATGTTCATTCGTTAAATAATTTACAACCGGTACTCGATCATCCGCTCGCCCGCCTTGAC
CACCTCGTCGTCGGGCCACACAAGCTTCATCACATCCAAAAACTCCTGGGCATAGTGCATCTGGA
TGCCGTACTTGTCGCGGTAAAAGTCCTCCACCTCGGTCATGGTGAACACCGGGGTGTCGTTGTCG
TGGAGCAACGCGTTGGTGGTGGCGGTCAGCGGCTCGTGGCCCTCCTCCTCGAGGTCGCGCAAGTA
CTCCTCAATCAAGTCCTTGCGGTTGTCGCGCGGGACAATCATCCGCTTGATGTGCCCGTTCAAGT
GGGCCCCCATCAACTTCTCCTTGACGCCGCCAATCGGCAACACCA
Found at i:372817 original size:3 final size:3
Alignment explanation
Indices: 372809--372837 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
372799 GGCGCGGAGC
372809 TCG TCG TCG TCG TCG TCG TCG TCG TCG TC
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TC
372838 CTCGCGCGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.31, T:0.34
Consensus pattern (3 bp):
TCG
Left flanking sequence: Indices 372309 -- 372808
GCTCGCCGTGGCCGTCGGCCTGGGTGGCCAGGTCCTCGAGCAGGGTGCGAGCCTGCTTCTTCACC
ATCAGCGTCTCGTCGGCGTTGGCAATGACAATCAGCAGCTCGTGGTCGGCGTCGGGCGCGGGCGC
GGGCTGCTGCGACGGCGCCTGGGCACGGCGGTCGGCGTTGATGCCCAACAACTTGAGCACCACGA
GGTACTGGATCAACCGCTTCTTGACGTGCTCCAACCCGTAGTGGTCGTCGTCCAACTGCAGCTTG
GCCACCTTGAGGTCGATCTCCTTGTTCAGGCGGAACTTGGTCACGTAGTGGTCCCAGGGAATGTC
CATGACAATCTCCAAGTAGTTGCGGATCACGTGGAAGTCCAGGTTGCCGCCGCCGGGGGTGTTGG
CGCTCAGCTTGATGCGCTTGTAGTCCTTGACAATGAGCCGCTTCAGCTCCGCCAGCAACCCGCGG
AGCTGCGGCAACCGCTGCTTGATAAACGTGGTGATGGCGCGGAGC
Right flanking sequence: Indices 372838 -- 373337
CTCGCGCGTCGCCAGCGGCTTGGGCTGGTAGCCGGGCTTCAACCCCGACCCGGCCGCGCGGGCGG
GCGCGCGCTTGTTTGTCATGCCCTCGAGCACCAACCGGATCAGCTTGAGCTGGTTGGCCACCACC
GTGGCCTTCTGGATGTTGGACGCCTCGGTGTTGAACCAGTGGTTGACGTAGGCGTTGTTGGCCAG
CAACTGGACAAACACCTGCTGCAAGCGGCCCACCATCGCCAGCAACTCCAGCACGCGGGCCGCGG
GCTTGGCGAGCTGCAAAAACGCCAACTTTTCGTGGTTGGGGAACGGCAACACCCCGCACGTCAAG
TCCAACAACCGCAAAAACGCCTTGGGGTCAATCACGTAGTTGGGGTTGTTGCCCAGGTACTGGCT
GTAGAGCTTCTGCAACAGCGCAAACGCCTTGCTGAAGTCCTTGTTGCCCACCAACTGGAGGTACA
ACGCGTTGGCCACCGGGTTGAGGGTCAACAAGTCCAGCGGCGCCA
Found at i:375145 original size:16 final size:16
Alignment explanation
Indices: 375124--375180 Score: 75
Period size: 16 Copynumber: 3.6 Consensus size: 16
375114 TCTCTCATTT
375124 CCTTCACCCTACTATC
1 CCTTCACCCTACTATC
375140 CCTTCACCCT-C-AGT-
1 CCTTCACCCTACTA-TC
375154 CCTTCAACCCTACTATC
1 CCTTC-ACCCTACTATC
375171 CCTTCACCCT
1 CCTTCACCCT
375181 TGGTCCCTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 6 0.17
15 7 0.19
16 17 0.47
17 6 0.17
ACGTcount: A:0.18, C:0.51, G:0.02, T:0.30
Consensus pattern (16 bp):
CCTTCACCCTACTATC
Left flanking sequence: Indices 374624 -- 375123
TGCCACGATTACGTCACTGGTGCGTGCGAGGATGCAAGCATGCGAGGCTGATCTGGAATAAGGTT
GGGAGTGTGGATGGAGTGGGAAGGGTGTGGGAAGGTAGGGGAGTAATGGGGAGTGGTAGGGGAAT
AGGTGTGAAGAGAGAGGTGTAGGGTGTTGAGGAGATGGACAGGGTTGGTAAGAGGGAGTTGTGGA
GAGTAGGTCTTGAGTAAGTCGCAGTAGTACACTGGGCATGTGAGCTGACGCAATGAGTAGAGTAG
TTGAAAAGTGAACTGAGAGTAGAACTGGCTTTTAGGCTGCTATTAGCCGTTCATCCCAGATGCGA
TAAGACTGTGTTGACTTTTGGTCGATTTTCCAGTTTCTCTGAAATTTCATAATTGGAAAGTTTCC
AGTGGTTGCTTAGCGACCGTACACCCTACCAGGCCATAAACACCCTACCAGGAACACCCTACGGC
CCCTTCACTTGCTGTCTTTTGTGCTACAAGTCTCTTCTCTCATTT
Right flanking sequence: Indices 375181 -- 375680
TGGTCCCTATACCCTAAATTCCTCCACCCTATAGTCCTCCAACCAATAGTCCTCCACCCTACCAA
TCATCCACCCTACCAATCCCCCACCCTACCAGTCCTCCACCCTACCAATCTCCACCCAACCAATC
TCCACCCAACCAATCTTTCACCTCACCAGCCCTTCACTCTGCCCCTCACCCTACGATTCTCCACC
ATTCCTTCCTGTCCTCATCCATTAGACTTACTATATACATGTCACTGCTTGGTCTGCTTCTCAAG
CACGTCCTTCAAGTTCACCTGGCCCGTGCCCCGCGCCAACGGCTTGGGCTGCGAGTCGCTCTTCT
TCCACCCAATCATGAAAATCACATTCACCGTCGCCGGCAACGTGGTGACCCCGTCGTGCACCTCG
CCGTGCAACAGCTTATAGATCTCGTTGGCCGCCAACAACACCTCGCGCGGCAAGAACAGCTCGCG
GGTGTTGACGGCGTTCTGCTCGCCCATCAACTGGAGATCCTCCAT
Found at i:375166 original size:31 final size:30
Alignment explanation
Indices: 375123--375180 Score: 107
Period size: 31 Copynumber: 1.9 Consensus size: 30
375113 TTCTCTCATT
375123 TCCTTCACCCTACTATCCCTTCACCCTCAG
1 TCCTTCACCCTACTATCCCTTCACCCTCAG
375153 TCCTTCAACCCTACTATCCCTTCACCCT
1 TCCTTC-ACCCTACTATCCCTTCACCCT
375181 TGGTCCCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 6 0.22
31 21 0.78
ACGTcount: A:0.17, C:0.50, G:0.02, T:0.31
Consensus pattern (30 bp):
TCCTTCACCCTACTATCCCTTCACCCTCAG
Left flanking sequence: Indices 374623 -- 375122
ATGCCACGATTACGTCACTGGTGCGTGCGAGGATGCAAGCATGCGAGGCTGATCTGGAATAAGGT
TGGGAGTGTGGATGGAGTGGGAAGGGTGTGGGAAGGTAGGGGAGTAATGGGGAGTGGTAGGGGAA
TAGGTGTGAAGAGAGAGGTGTAGGGTGTTGAGGAGATGGACAGGGTTGGTAAGAGGGAGTTGTGG
AGAGTAGGTCTTGAGTAAGTCGCAGTAGTACACTGGGCATGTGAGCTGACGCAATGAGTAGAGTA
GTTGAAAAGTGAACTGAGAGTAGAACTGGCTTTTAGGCTGCTATTAGCCGTTCATCCCAGATGCG
ATAAGACTGTGTTGACTTTTGGTCGATTTTCCAGTTTCTCTGAAATTTCATAATTGGAAAGTTTC
CAGTGGTTGCTTAGCGACCGTACACCCTACCAGGCCATAAACACCCTACCAGGAACACCCTACGG
CCCCTTCACTTGCTGTCTTTTGTGCTACAAGTCTCTTCTCTCATT
Right flanking sequence: Indices 375181 -- 375680
TGGTCCCTATACCCTAAATTCCTCCACCCTATAGTCCTCCAACCAATAGTCCTCCACCCTACCAA
TCATCCACCCTACCAATCCCCCACCCTACCAGTCCTCCACCCTACCAATCTCCACCCAACCAATC
TCCACCCAACCAATCTTTCACCTCACCAGCCCTTCACTCTGCCCCTCACCCTACGATTCTCCACC
ATTCCTTCCTGTCCTCATCCATTAGACTTACTATATACATGTCACTGCTTGGTCTGCTTCTCAAG
CACGTCCTTCAAGTTCACCTGGCCCGTGCCCCGCGCCAACGGCTTGGGCTGCGAGTCGCTCTTCT
TCCACCCAATCATGAAAATCACATTCACCGTCGCCGGCAACGTGGTGACCCCGTCGTGCACCTCG
CCGTGCAACAGCTTATAGATCTCGTTGGCCGCCAACAACACCTCGCGCGGCAAGAACAGCTCGCG
GGTGTTGACGGCGTTCTGCTCGCCCATCAACTGGAGATCCTCCAT
Found at i:375209 original size:15 final size:16
Alignment explanation
Indices: 375191--375302 Score: 78
Period size: 16 Copynumber: 7.2 Consensus size: 16
375181 TGGTCCCTAT
*
375191 ACCCTA-AATTCCTCC
1 ACCCTACAAGTCCTCC
*
375206 ACCCTA-TAGTCCTCC
1 ACCCTACAAGTCCTCC
*
375221 AACC-A-ATAGTCCTCC
1 ACCCTACA-AGTCCTCC
*
375236 ACCCTACCAA-TCATCC
1 ACCCTA-CAAGTCCTCC
*
375252 ACCCTACCAA-TCCCCC
1 ACCCTA-CAAGTCCTCC
*
375268 ACCCTACCAGTCCTCC
1 ACCCTACAAGTCCTCC
375284 ACCCTACCAA-T-CTCC
1 ACCCTA-CAAGTCCTCC
375299 ACCC
1 ACCC
375303 AACCAATCTC
Statistics
Matches: 80, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
14 1 0.01
15 37 0.46
16 38 0.47
17 3 0.04
18 1 0.01
ACGTcount: A:0.26, C:0.52, G:0.03, T:0.20
Consensus pattern (16 bp):
ACCCTACAAGTCCTCC
Left flanking sequence: Indices 374691 -- 375190
GAGTGTGGATGGAGTGGGAAGGGTGTGGGAAGGTAGGGGAGTAATGGGGAGTGGTAGGGGAATAG
GTGTGAAGAGAGAGGTGTAGGGTGTTGAGGAGATGGACAGGGTTGGTAAGAGGGAGTTGTGGAGA
GTAGGTCTTGAGTAAGTCGCAGTAGTACACTGGGCATGTGAGCTGACGCAATGAGTAGAGTAGTT
GAAAAGTGAACTGAGAGTAGAACTGGCTTTTAGGCTGCTATTAGCCGTTCATCCCAGATGCGATA
AGACTGTGTTGACTTTTGGTCGATTTTCCAGTTTCTCTGAAATTTCATAATTGGAAAGTTTCCAG
TGGTTGCTTAGCGACCGTACACCCTACCAGGCCATAAACACCCTACCAGGAACACCCTACGGCCC
CTTCACTTGCTGTCTTTTGTGCTACAAGTCTCTTCTCTCATTTCCTTCACCCTACTATCCCTTCA
CCCTCAGTCCTTCAACCCTACTATCCCTTCACCCTTGGTCCCTAT
Right flanking sequence: Indices 375303 -- 375802
AACCAATCTCCACCCAACCAATCTTTCACCTCACCAGCCCTTCACTCTGCCCCTCACCCTACGAT
TCTCCACCATTCCTTCCTGTCCTCATCCATTAGACTTACTATATACATGTCACTGCTTGGTCTGC
TTCTCAAGCACGTCCTTCAAGTTCACCTGGCCCGTGCCCCGCGCCAACGGCTTGGGCTGCGAGTC
GCTCTTCTTCCACCCAATCATGAAAATCACATTCACCGTCGCCGGCAACGTGGTGACCCCGTCGT
GCACCTCGCCGTGCAACAGCTTATAGATCTCGTTGGCCGCCAACAACACCTCGCGCGGCAAGAAC
AGCTCGCGGGTGTTGACGGCGTTCTGCTCGCCCATCAACTGGAGATCCTCCATCACCGCCACAAT
GTCGGGGTAGCCGCCAATGACAATCTCCTCCTGGTCGATGGTCAACATCGAAAACCCGGCCCGGT
TGAGCAACGAGCCAATGTCGTTCAAGTGGACCAACGGACTCACCC
Found at i:375307 original size:15 final size:15
Alignment explanation
Indices: 375232--375326 Score: 127
Period size: 16 Copynumber: 6.1 Consensus size: 15
375222 ACCAATAGTC
375232 CTCCACCCTACCAAT
1 CTCCACCCTACCAAT
375247 CATCCACCCTACCAAT
1 C-TCCACCCTACCAAT
* *
375263 CCCCCACCCTACCAGT
1 -CTCCACCCTACCAAT
375279 CCTCCACCCTACCAAT
1 -CTCCACCCTACCAAT
*
375295 CTCCACCCAACCAAT
1 CTCCACCCTACCAAT
*
375310 CTCCACCCAACCAAT
1 CTCCACCCTACCAAT
375325 CT
1 CT
375327 TTCACCTCAC
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
15 32 0.44
16 40 0.55
17 1 0.01
ACGTcount: A:0.27, C:0.55, G:0.01, T:0.17
Consensus pattern (15 bp):
CTCCACCCTACCAAT
Left flanking sequence: Indices 374732 -- 375231
TAATGGGGAGTGGTAGGGGAATAGGTGTGAAGAGAGAGGTGTAGGGTGTTGAGGAGATGGACAGG
GTTGGTAAGAGGGAGTTGTGGAGAGTAGGTCTTGAGTAAGTCGCAGTAGTACACTGGGCATGTGA
GCTGACGCAATGAGTAGAGTAGTTGAAAAGTGAACTGAGAGTAGAACTGGCTTTTAGGCTGCTAT
TAGCCGTTCATCCCAGATGCGATAAGACTGTGTTGACTTTTGGTCGATTTTCCAGTTTCTCTGAA
ATTTCATAATTGGAAAGTTTCCAGTGGTTGCTTAGCGACCGTACACCCTACCAGGCCATAAACAC
CCTACCAGGAACACCCTACGGCCCCTTCACTTGCTGTCTTTTGTGCTACAAGTCTCTTCTCTCAT
TTCCTTCACCCTACTATCCCTTCACCCTCAGTCCTTCAACCCTACTATCCCTTCACCCTTGGTCC
CTATACCCTAAATTCCTCCACCCTATAGTCCTCCAACCAATAGTC
Right flanking sequence: Indices 375327 -- 375826
TTCACCTCACCAGCCCTTCACTCTGCCCCTCACCCTACGATTCTCCACCATTCCTTCCTGTCCTC
ATCCATTAGACTTACTATATACATGTCACTGCTTGGTCTGCTTCTCAAGCACGTCCTTCAAGTTC
ACCTGGCCCGTGCCCCGCGCCAACGGCTTGGGCTGCGAGTCGCTCTTCTTCCACCCAATCATGAA
AATCACATTCACCGTCGCCGGCAACGTGGTGACCCCGTCGTGCACCTCGCCGTGCAACAGCTTAT
AGATCTCGTTGGCCGCCAACAACACCTCGCGCGGCAAGAACAGCTCGCGGGTGTTGACGGCGTTC
TGCTCGCCCATCAACTGGAGATCCTCCATCACCGCCACAATGTCGGGGTAGCCGCCAATGACAAT
CTCCTCCTGGTCGATGGTCAACATCGAAAACCCGGCCCGGTTGAGCAACGAGCCAATGTCGTTCA
AGTGGACCAACGGACTCACCCGCGCGGCCATGCCCCCGCGCCGCT
Found at i:388905 original size:20 final size:20
Alignment explanation
Indices: 388880--388936 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
388870 ATGGGTAAAA
*
388880 GAAAGAGTAGGGATAATTAC
1 GAAAGAGTAGGGATAAATAC
* *
388900 GAAAGAGTAGGGGTAAATAT
1 GAAAGAGTAGGGATAAATAC
* *
388920 GAAAGAGGAGGGGTAAA
1 GAAAGAGTAGGGATAAA
388937 ACTCAAATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.46, C:0.02, G:0.37, T:0.16
Consensus pattern (20 bp):
GAAAGAGTAGGGATAAATAC
Left flanking sequence: Indices 388380 -- 388879
GGTTTTTGGTGGCTGCTACGGGCTACGTCGATTCTACTGGGCCTGATCCGGATCCCCAGGTGGTG
ACCAATTGTGGGGAACTCGCGCTTAGTCGCGTTTCGCATGCAGGTCAACGGCTGATCTGAGTCGT
CCCGGGAACCGCCTGCGGCTGCCGTGAGGTTCGTCGGGTACGCCGGCGGATGGCGTCATCTGGCG
GCGGGGGGAGGGGTGGCGACTGCCGTGGTGCTTGGTGGATGCGGTGGTTGTCGCGCGGTGCCCGC
TCCCCTGTTCCGCGCTAACCTTGGCCAGTGGCGGACGAACGGAACTAGCCCGATGATGTAGTGTG
ATATGCTACCACGATAAACAGTCCCAATCCAGCGAATTCCGGCGGCAACCGCGCGCCCGCCGAGT
TTGACACGCCCAACTAGGCTTTTTCGGCGGGTTGATGGCAGGCAGCGTGCATAAAGTCGGTGTTA
CCGGAAAGAGAACGGAAAGAGAACGACTAAAGGGTATGGGTAAAA
Right flanking sequence: Indices 388937 -- 389436
ACTCAAATAGAAAAGAAGGTGGATTACATTACTGACTTGGCCTTGCCATATCTCAAAGCACTATC
TGTGGAGACTATCAAGACTGTAGCCACGCCGGCCTCTCATGGCAGTAGTTGTGCAATTAACACCG
AAAGACCCAATATAGACCCAGTACCGGCCAATGCAACATCGCACTCCTTGTTTGCCCTTGTTTGC
CCTTGTTTGCCCTCGCTAAGCGCGACCACTTTAGGAAACCTTGCGACCACGATAAATGTCTGGCA
AAAATCGGGGGCTCAAGAGCCAACAATGGCCGCGATCTTCTGTATCCGGTAATTACACCCGCCCC
AGGGAACCTTCCGCCCCCCGATCTCGCTTCGCTCGGTTGCACGATCACCCTAAACCCTGGTTGTG
TGTCCAGCCACAATGGTGGCGTGCACACTACCGGTGCCAAATGCTTCTCGAGCCCCGTGTCAGGG
GCTCAATGGTCATTGTTGTGCGGTCTTGGCAGTCGGACAAGATCA
Found at i:389127 original size:10 final size:10
Alignment explanation
Indices: 389112--389144 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
389102 ACATCGCACT
389112 CCTTGTTTGC
1 CCTTGTTTGC
389122 CCTTGTTTGC
1 CCTTGTTTGC
389132 CCTTGTTTGC
1 CCTTGTTTGC
389142 CCT
1 CCT
389145 CGCTAAGCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.00, C:0.33, G:0.18, T:0.48
Consensus pattern (10 bp):
CCTTGTTTGC
Left flanking sequence: Indices 388612 -- 389111
GATGCGGTGGTTGTCGCGCGGTGCCCGCTCCCCTGTTCCGCGCTAACCTTGGCCAGTGGCGGACG
AACGGAACTAGCCCGATGATGTAGTGTGATATGCTACCACGATAAACAGTCCCAATCCAGCGAAT
TCCGGCGGCAACCGCGCGCCCGCCGAGTTTGACACGCCCAACTAGGCTTTTTCGGCGGGTTGATG
GCAGGCAGCGTGCATAAAGTCGGTGTTACCGGAAAGAGAACGGAAAGAGAACGACTAAAGGGTAT
GGGTAAAAGAAAGAGTAGGGATAATTACGAAAGAGTAGGGGTAAATATGAAAGAGGAGGGGTAAA
ACTCAAATAGAAAAGAAGGTGGATTACATTACTGACTTGGCCTTGCCATATCTCAAAGCACTATC
TGTGGAGACTATCAAGACTGTAGCCACGCCGGCCTCTCATGGCAGTAGTTGTGCAATTAACACCG
AAAGACCCAATATAGACCCAGTACCGGCCAATGCAACATCGCACT
Right flanking sequence: Indices 389145 -- 389644
CGCTAAGCGCGACCACTTTAGGAAACCTTGCGACCACGATAAATGTCTGGCAAAAATCGGGGGCT
CAAGAGCCAACAATGGCCGCGATCTTCTGTATCCGGTAATTACACCCGCCCCAGGGAACCTTCCG
CCCCCCGATCTCGCTTCGCTCGGTTGCACGATCACCCTAAACCCTGGTTGTGTGTCCAGCCACAA
TGGTGGCGTGCACACTACCGGTGCCAAATGCTTCTCGAGCCCCGTGTCAGGGGCTCAATGGTCAT
TGTTGTGCGGTCTTGGCAGTCGGACAAGATCACGGAGTGGCGTCCACAGCGCCCACCCAGTCGTC
CCACGCACGCTCCCTACGTTCGTTGCCATTGTTCGGGGTGCCTTGATCACCCCACTCGTTAGGCA
AATATTATTTCGCTCGCTCCGTATCTCCACACGGCTCTCGAGGCAAGCCAACCCGACGACACCAC
CCGGAGCAGAGCACGGAGCTCGCCAATTGCGGGGTAACCGTGGCC
Found at i:392975 original size:15 final size:15
Alignment explanation
Indices: 392955--392984 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
392945 CATGCAATTG
392955 CCGCAATCACTTTCA
1 CCGCAATCACTTTCA
392970 CCGCAATCACTTTCA
1 CCGCAATCACTTTCA
392985 AAAGTTGCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.07, T:0.27
Consensus pattern (15 bp):
CCGCAATCACTTTCA
Left flanking sequence: Indices 392455 -- 392954
CTCTGGGGCCCCCGGACCGCCTGCTTGGTTGCTTGTTTGTCTGCATATGGCGTTGCCAGTCGCCC
TGCCGATAAGAATCCGGGGAAAAATATCTGATCTGACGGGGCTCCGGTATTGGCCTATGGGCTGA
TCAGCCGTGTGGACAGCAGCCCCTGGGAGTGGTTGAGCCGATAGCTTATCTAGTAGGTGATCTGA
GTCCGCGGGTGGGGGGCCACGGAGTGGTTGTGGGGACTCCCTATGCACTGGCAGCACGCCGTGTG
CAGTAACCAAGCCCGGTCGCCAAGCCGTAAACGGCCCACCCCAGACGTGTCACGTTGTGTGGGGA
GCGATGGAGCGTGTGAAACGTAGCTACTAAGTCCGATGGGGTCCGGATCCGTTGCCAGGGGCGCC
CCGTGGCCGCAAACCATTGGTCCACTCGTAAAACAATCGAGATGAGGAAAAAAGCTCGGAGTTTA
GCGAGGTCCCCGAGACTCCCACGAGACCCTTGTTCCATGCAATTG
Right flanking sequence: Indices 392985 -- 393484
AAAGTTGCGACCTCGGCAAATGGGCCGTTTGACTCTTCGGGCGAGCGTTGGCACGCCTCGCGGCT
GCATGATCCCGCAGGTTCTATAATGCTAGTGTATTAAACCTTTAACTCCGTTCTATAAATCAATC
CTTAGTCATGTTTTTCGTGGTCGTGTCCACCCGTGGCGCCGTTGTGCCCGCGCACCACGAGGTCC
TCGGGGTCCACCGGCGCCGTCAGGGCGTTGGACGAGTCAATGGCCACGTGATGCACCTGGGACTC
GTAGGGCTTGATCTCGCCCGTTTCGTCCACAGAAGGTATGTCAGCGTGCATCGAGTGGTCTTCCG
AGTAAGGATACTCGCCGGCGGTCGGGCCCCACGCCAAAAAGTCCCGGCGCACCTCAATGTAGTCG
TATGCAAACTCCCCGATCTGGGCCTCGTCGATACCGGCCTCCTCGCCGTCGTAGTCAATACGCAA
CTGCAACCCGGGGATCTTGTTGATGGCGAAGGCAAGCAAGAGCGT
Found at i:399700 original size:9 final size:9
Alignment explanation
Indices: 399686--399745 Score: 111
Period size: 9 Copynumber: 6.7 Consensus size: 9
399676 GTGAGGGGGT
399686 GTGGAGAAG
1 GTGGAGAAG
399695 GTGGAGAAG
1 GTGGAGAAG
399704 GTGGAGAAG
1 GTGGAGAAG
399713 GTGGAGAAG
1 GTGGAGAAG
399722 GTGGAGAAG
1 GTGGAGAAG
*
399731 GTGGAGATG
1 GTGGAGAAG
399740 GTGGAG
1 GTGGAG
399746 GGAGAAGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.13
Consensus pattern (9 bp):
GTGGAGAAG
Left flanking sequence: Indices 399186 -- 399685
TTGAACGACCAGAAGCTGTGTTTGATTTTGGGCCGCGGCTACCAGTTTGCCACTGCGTTGGAGGG
GGCGTTGAAGATCAAGGAGATTTCGTACATGCACTCGGAGGGTGTGTTGGCGGGCGAGTTGAAGC
ACGGTGTGTTGGCGTTGGTGGACGACAAGTTGCCCATCATTGCCTTTGCCACGCGCGACTCGTTG
TTCCCCAAGACGATGTCTGCCATTGAGCAGGTGACTGCGCGTGACGGGCGGCCGATTGTTGTGTG
CAACAAGGGCGACCTGATCACCCAGAACGACAAGATCTTTGCCACGTTGGAGGTGCCCGAGACCG
TGGACTGTTTGCAGGGGTTGTTGAACGTGATTCCCATGCAGTTGATGCTGTACTGGTTGGCGGTG
AACCGTGGTGAGGATGTGGATTTCCCGAGAAACTTGGCCAAGTCGGTGACGGTGGAGTAAGGGTT
TAATGATAATGTATTAAATAAATGAAATAGAGAGTGTGAGGGGGT
Right flanking sequence: Indices 399746 -- 400245
GGAGAAGTTTGCCTGGTGGGTATACGAGTGGGTTGAAGATAGTAGGTGGTGTCAGGCGGGTGTGT
GCGCTAGGTTCGTGGGGTACTGATAGAGTACTTAGCCGTTACTATTGATGAATCATTGAACCATT
ACTTTGGAACTAGTCTTCGGCTAAGTAGCCATTCTTTGGCTGTGTAACCAAACCTGGTTTGATGA
GTATTCCCAAGCCGCTGTGTCACTAACTAAACCTTGGTTAGTTGAGTTTTCCCAAGCCGCTGTGT
AACCATTTCTTGCTTATAATCATTCTGGCTTGTAACCATTTTGGCTTGTAACCATTATGGCTTGT
AACCATTCTGGCTTCTAACCACATCCTGGCTTGTAACCATTACGTTATGCTAACATCATTAGCCA
AAATAGATTTCTAGGGTATTTTAATCGCTATTGCAACTGCATTCCTTGGCCCTGACAATTCCTTG
GCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCCTCTCTT
Found at i:399993 original size:45 final size:44
Alignment explanation
Indices: 399920--400005 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 44
399910 TTTGGCTGTG
*
399920 TAACCAAACCTGGTTTGATGAGTATTCCCAAGCCGCTGTGTCAC
1 TAACCAAACCTGGTTAGATGAGTATTCCCAAGCCGCTGTGTCAC
* * *
399964 TAACTAAACCTTGGTTAGTTGAGTTTTCCCAAGCCGCTGTGT
1 TAACCAAACC-TGGTTAGATGAGTATTCCCAAGCCGCTGTGT
400006 AACCATTTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 9 0.24
45 28 0.76
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.31
Consensus pattern (44 bp):
TAACCAAACCTGGTTAGATGAGTATTCCCAAGCCGCTGTGTCAC
Left flanking sequence: Indices 399420 -- 399919
CGTGACGGGCGGCCGATTGTTGTGTGCAACAAGGGCGACCTGATCACCCAGAACGACAAGATCTT
TGCCACGTTGGAGGTGCCCGAGACCGTGGACTGTTTGCAGGGGTTGTTGAACGTGATTCCCATGC
AGTTGATGCTGTACTGGTTGGCGGTGAACCGTGGTGAGGATGTGGATTTCCCGAGAAACTTGGCC
AAGTCGGTGACGGTGGAGTAAGGGTTTAATGATAATGTATTAAATAAATGAAATAGAGAGTGTGA
GGGGGTGTGGAGAAGGTGGAGAAGGTGGAGAAGGTGGAGAAGGTGGAGAAGGTGGAGATGGTGGA
GGGAGAAGTTTGCCTGGTGGGTATACGAGTGGGTTGAAGATAGTAGGTGGTGTCAGGCGGGTGTG
TGCGCTAGGTTCGTGGGGTACTGATAGAGTACTTAGCCGTTACTATTGATGAATCATTGAACCAT
TACTTTGGAACTAGTCTTCGGCTAAGTAGCCATTCTTTGGCTGTG
Right flanking sequence: Indices 400006 -- 400505
AACCATTTCTTGCTTATAATCATTCTGGCTTGTAACCATTTTGGCTTGTAACCATTATGGCTTGT
AACCATTCTGGCTTCTAACCACATCCTGGCTTGTAACCATTACGTTATGCTAACATCATTAGCCA
AAATAGATTTCTAGGGTATTTTAATCGCTATTGCAACTGCATTCCTTGGCCCTGACAATTCCTTG
GCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCCTCTCTTGTTCCCACGCGGTCCACCTG
AAATTTGGTTGTATGGGAGAAACACGCGTGGGTCACACGAGGCCACCCATTCGTGACGCCAACCC
ACCCGTCGCTAACCCACCCATGACGCCAAACCACCGTGACGCCCACCCGTGACGCCCACCCACCC
GTGACGTACTCGTGACCTCCCCACGCACGCACCCGTAACCCACTCTTTTGCCACTACGGTCTATT
GGCCCATGTCCCGCATAAAATTACCACATTAAAACCCACCCACAC
Found at i:400036 original size:16 final size:16
Alignment explanation
Indices: 400003--400111 Score: 128
Period size: 16 Copynumber: 6.6 Consensus size: 16
399993 CAAGCCGCTG
*
400003 TGTAACCATTTCTTGCT
1 TGTAACCA-TTCTGGCT
* *
400020 TATAATCATTCTGGCT
1 TGTAACCATTCTGGCT
*
400036 TGTAACCATTTTGGCT
1 TGTAACCATTCTGGCT
*
400052 TGTAACCATTATGGCT
1 TGTAACCATTCTGGCT
400068 TGTAACCATTCTGGCT
1 TGTAACCATTCTGGCT
* *
400084 TCTAACCACATCCTGGCT
1 TGTAA-C-CATTCTGGCT
400102 TGTAACCATT
1 TGTAACCATT
400112 ACGTTATGCT
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
16 57 0.73
17 8 0.10
18 13 0.17
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (16 bp):
TGTAACCATTCTGGCT
Left flanking sequence: Indices 399503 -- 400002
CGAGACCGTGGACTGTTTGCAGGGGTTGTTGAACGTGATTCCCATGCAGTTGATGCTGTACTGGT
TGGCGGTGAACCGTGGTGAGGATGTGGATTTCCCGAGAAACTTGGCCAAGTCGGTGACGGTGGAG
TAAGGGTTTAATGATAATGTATTAAATAAATGAAATAGAGAGTGTGAGGGGGTGTGGAGAAGGTG
GAGAAGGTGGAGAAGGTGGAGAAGGTGGAGAAGGTGGAGATGGTGGAGGGAGAAGTTTGCCTGGT
GGGTATACGAGTGGGTTGAAGATAGTAGGTGGTGTCAGGCGGGTGTGTGCGCTAGGTTCGTGGGG
TACTGATAGAGTACTTAGCCGTTACTATTGATGAATCATTGAACCATTACTTTGGAACTAGTCTT
CGGCTAAGTAGCCATTCTTTGGCTGTGTAACCAAACCTGGTTTGATGAGTATTCCCAAGCCGCTG
TGTCACTAACTAAACCTTGGTTAGTTGAGTTTTCCCAAGCCGCTG
Right flanking sequence: Indices 400112 -- 400611
ACGTTATGCTAACATCATTAGCCAAAATAGATTTCTAGGGTATTTTAATCGCTATTGCAACTGCA
TTCCTTGGCCCTGACAATTCCTTGGCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCCTC
TCTTGTTCCCACGCGGTCCACCTGAAATTTGGTTGTATGGGAGAAACACGCGTGGGTCACACGAG
GCCACCCATTCGTGACGCCAACCCACCCGTCGCTAACCCACCCATGACGCCAAACCACCGTGACG
CCCACCCGTGACGCCCACCCACCCGTGACGTACTCGTGACCTCCCCACGCACGCACCCGTAACCC
ACTCTTTTGCCACTACGGTCTATTGGCCCATGTCCCGCATAAAATTACCACATTAAAACCCACCC
ACACTTCTCCACCTTCTCCACCACTCTCCACTACACCCCCTCCACCCCTTCCCCTCGTCAGCCTA
ACAAATATGATATTAAATAAATACTACAACTACTTGCGGTCAAAG
Found at i:400382 original size:13 final size:13
Alignment explanation
Indices: 400364--400391 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
400354 CGCCAAACCA
400364 CCGTGACGCCCAC
1 CCGTGACGCCCAC
400377 CCGTGACGCCCAC
1 CCGTGACGCCCAC
400390 CC
1 CC
400392 ACCCGTGACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.57, G:0.21, T:0.07
Consensus pattern (13 bp):
CCGTGACGCCCAC
Left flanking sequence: Indices 399864 -- 400363
CATTGAACCATTACTTTGGAACTAGTCTTCGGCTAAGTAGCCATTCTTTGGCTGTGTAACCAAAC
CTGGTTTGATGAGTATTCCCAAGCCGCTGTGTCACTAACTAAACCTTGGTTAGTTGAGTTTTCCC
AAGCCGCTGTGTAACCATTTCTTGCTTATAATCATTCTGGCTTGTAACCATTTTGGCTTGTAACC
ATTATGGCTTGTAACCATTCTGGCTTCTAACCACATCCTGGCTTGTAACCATTACGTTATGCTAA
CATCATTAGCCAAAATAGATTTCTAGGGTATTTTAATCGCTATTGCAACTGCATTCCTTGGCCCT
GACAATTCCTTGGCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCCTCTCTTGTTCCCAC
GCGGTCCACCTGAAATTTGGTTGTATGGGAGAAACACGCGTGGGTCACACGAGGCCACCCATTCG
TGACGCCAACCCACCCGTCGCTAACCCACCCATGACGCCAAACCA
Right flanking sequence: Indices 400392 -- 400891
ACCCGTGACGTACTCGTGACCTCCCCACGCACGCACCCGTAACCCACTCTTTTGCCACTACGGTC
TATTGGCCCATGTCCCGCATAAAATTACCACATTAAAACCCACCCACACTTCTCCACCTTCTCCA
CCACTCTCCACTACACCCCCTCCACCCCTTCCCCTCGTCAGCCTAACAAATATGATATTAAATAA
ATACTACAACTACTTGCGGTCAAAGTAGTCCGACCCGCCAAAGTACGCCACGCTCCAGTCGTACA
CCCGGTCGCCAATCCGCAAGTACTGGTTGGTGTAGTCGCGAACCGTCTCGTTCTCGATCTTCTCG
GTGGCAGGCATGAGCCCCGTGTTGCGCTTGACGCCCGCAAGGAACGCCAGAACCAAAACCAAGTC
AAAGCCAATGTGGGCCGCCTTGGTGATAGTACCCATGGTGATGCCGCCCTCACGAGTTTTTCCAT
GCGTTTTGTAGCGGGACCCGTGGCCTGTGTGCAGGCGGTCGTCAT
Found at i:400385 original size:29 final size:30
Alignment explanation
Indices: 400343--400401 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
400333 CCGTCGCTAA
400343 CCCACCCATGACGCCAAACCA-CCGTGACG
1 CCCACCCATGACGCCAAACCACCCGTGACG
* * *
400372 CCCACCCGTGACGCCCACCCACCCGTGACG
1 CCCACCCATGACGCCAAACCACCCGTGACG
400402 TACTCGTGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.22, C:0.53, G:0.19, T:0.07
Consensus pattern (30 bp):
CCCACCCATGACGCCAAACCACCCGTGACG
Left flanking sequence: Indices 399843 -- 400342
TAGCCGTTACTATTGATGAATCATTGAACCATTACTTTGGAACTAGTCTTCGGCTAAGTAGCCAT
TCTTTGGCTGTGTAACCAAACCTGGTTTGATGAGTATTCCCAAGCCGCTGTGTCACTAACTAAAC
CTTGGTTAGTTGAGTTTTCCCAAGCCGCTGTGTAACCATTTCTTGCTTATAATCATTCTGGCTTG
TAACCATTTTGGCTTGTAACCATTATGGCTTGTAACCATTCTGGCTTCTAACCACATCCTGGCTT
GTAACCATTACGTTATGCTAACATCATTAGCCAAAATAGATTTCTAGGGTATTTTAATCGCTATT
GCAACTGCATTCCTTGGCCCTGACAATTCCTTGGCTTAACCAAACCCCGGCCTGTAACCGCTCCT
ATCCCCCTCTCTTGTTCCCACGCGGTCCACCTGAAATTTGGTTGTATGGGAGAAACACGCGTGGG
TCACACGAGGCCACCCATTCGTGACGCCAACCCACCCGTCGCTAA
Right flanking sequence: Indices 400402 -- 400901
TACTCGTGACCTCCCCACGCACGCACCCGTAACCCACTCTTTTGCCACTACGGTCTATTGGCCCA
TGTCCCGCATAAAATTACCACATTAAAACCCACCCACACTTCTCCACCTTCTCCACCACTCTCCA
CTACACCCCCTCCACCCCTTCCCCTCGTCAGCCTAACAAATATGATATTAAATAAATACTACAAC
TACTTGCGGTCAAAGTAGTCCGACCCGCCAAAGTACGCCACGCTCCAGTCGTACACCCGGTCGCC
AATCCGCAAGTACTGGTTGGTGTAGTCGCGAACCGTCTCGTTCTCGATCTTCTCGGTGGCAGGCA
TGAGCCCCGTGTTGCGCTTGACGCCCGCAAGGAACGCCAGAACCAAAACCAAGTCAAAGCCAATG
TGGGCCGCCTTGGTGATAGTACCCATGGTGATGCCGCCCTCACGAGTTTTTCCATGCGTTTTGTA
GCGGGACCCGTGGCCTGTGTGCAGGCGGTCGTCATGCGCGACATC
Found at i:400394 original size:17 final size:17
Alignment explanation
Indices: 400317--400401 Score: 85
Period size: 17 Copynumber: 5.4 Consensus size: 17
400307 GCCACCCATT
400317 CGTGACGCCAACCCACC
1 CGTGACGCCAACCCACC
*
400334 CGT--CGCTAACCCACC
1 CGTGACGCCAACCCACC
* *
400349 CATGACGCCAAACCA-C
1 CGTGACGCCAACCCACC
400365 CGTGACG----CCCACC
1 CGTGACGCCAACCCACC
*
400378 CGTGACGCCCACCCACC
1 CGTGACGCCAACCCACC
400395 CGTGACG
1 CGTGACG
400402 TACTCGTGAC
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
12 3 0.05
13 8 0.15
15 13 0.24
16 7 0.13
17 24 0.44
ACGTcount: A:0.22, C:0.51, G:0.19, T:0.08
Consensus pattern (17 bp):
CGTGACGCCAACCCACC
Left flanking sequence: Indices 399817 -- 400316
GGTTCGTGGGGTACTGATAGAGTACTTAGCCGTTACTATTGATGAATCATTGAACCATTACTTTG
GAACTAGTCTTCGGCTAAGTAGCCATTCTTTGGCTGTGTAACCAAACCTGGTTTGATGAGTATTC
CCAAGCCGCTGTGTCACTAACTAAACCTTGGTTAGTTGAGTTTTCCCAAGCCGCTGTGTAACCAT
TTCTTGCTTATAATCATTCTGGCTTGTAACCATTTTGGCTTGTAACCATTATGGCTTGTAACCAT
TCTGGCTTCTAACCACATCCTGGCTTGTAACCATTACGTTATGCTAACATCATTAGCCAAAATAG
ATTTCTAGGGTATTTTAATCGCTATTGCAACTGCATTCCTTGGCCCTGACAATTCCTTGGCTTAA
CCAAACCCCGGCCTGTAACCGCTCCTATCCCCCTCTCTTGTTCCCACGCGGTCCACCTGAAATTT
GGTTGTATGGGAGAAACACGCGTGGGTCACACGAGGCCACCCATT
Right flanking sequence: Indices 400402 -- 400901
TACTCGTGACCTCCCCACGCACGCACCCGTAACCCACTCTTTTGCCACTACGGTCTATTGGCCCA
TGTCCCGCATAAAATTACCACATTAAAACCCACCCACACTTCTCCACCTTCTCCACCACTCTCCA
CTACACCCCCTCCACCCCTTCCCCTCGTCAGCCTAACAAATATGATATTAAATAAATACTACAAC
TACTTGCGGTCAAAGTAGTCCGACCCGCCAAAGTACGCCACGCTCCAGTCGTACACCCGGTCGCC
AATCCGCAAGTACTGGTTGGTGTAGTCGCGAACCGTCTCGTTCTCGATCTTCTCGGTGGCAGGCA
TGAGCCCCGTGTTGCGCTTGACGCCCGCAAGGAACGCCAGAACCAAAACCAAGTCAAAGCCAATG
TGGGCCGCCTTGGTGATAGTACCCATGGTGATGCCGCCCTCACGAGTTTTTCCATGCGTTTTGTA
GCGGGACCCGTGGCCTGTGTGCAGGCGGTCGTCATGCGCGACATC
Found at i:401677 original size:21 final size:22
Alignment explanation
Indices: 401643--401703 Score: 90
Period size: 21 Copynumber: 2.9 Consensus size: 22
401633 CGACCGCCCG
*
401643 CGGGCCCTGCTGGCGCACCCAC
1 CGGGCCCAGCTGGCGCACCCAC
401665 CGGGCCC-GCTGGCGCACCCAC
1 CGGGCCCAGCTGGCGCACCCAC
*
401686 C-GGCCCAGCAGGCGCACC
1 CGGGCCCAGCTGGCGCACC
401704 GTCAGGCCCA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
20 5 0.14
21 25 0.68
22 7 0.19
ACGTcount: A:0.11, C:0.51, G:0.33, T:0.05
Consensus pattern (22 bp):
CGGGCCCAGCTGGCGCACCCAC
Left flanking sequence: Indices 401143 -- 401642
AAGACTGAGGACCCCAGCCCTAGGTTTCGCCGTGGCCTCTCTACGGGCTTCTACTTCCCCCTGGT
GTTGGCTCGCCTGCCGGCGTGCCTTACCTAATGCGCGCCACCAGAACAAAATTTTCTTACGGTTC
AGAGGAGCAGCGATACACATGTCGGACAGATACCGCCCCACAGGCCCTCGAGGCAGTCGCGACTA
CAACCTGGAGCCGCGTGGCGACCGGCGGGTGCCGCGGGGCGACTCGTACCGCGACTCGTACCAGC
CGGTGCGCGACCGTGCCGACCGTCGCGACCGCCACGACGGGCCCAGCAGCTACGACAACTACCGG
CGCCAGCGCGACGAGCCGGACCGGGACAGAGACTCGTGGGAGTCCCGGGGACCGCGCGAGCCCTA
CCGCCGCCGCGGCGAGCGCGACCAGTACCGCCCGTACGACCGCGACGTGCCCAGTGGCGACAAGC
GGCGGGCTCCGCCCCTGGGCCCGGCAGCGAAGCGGCGACCGCCCG
Right flanking sequence: Indices 401704 -- 402203
GTCAGGCCCAGCAGGAGCACCGTCAGGCCCAGCTGCCATCCGCGCGCCACCCCCGGGTCCCAAGG
CCGCACCCAGCGGGCCCAAGGCCACCACCGGACCCAAAGCCACCACCGGACCCAAGGCCACCAGC
GGACCCAAGGTCCCGCCCAAGCCCACCGCCCGCCCGCCCAAACGCGCGCCGCGCAAGTTGGCGCC
GCACCAGCTCTACCTGGTGCAAACTAGCATGCCCGAGATCTACAAACGCACCCAGCAGGTGGGCG
AGGGCACCTACGGCAAGGTGTACAAGGCAGTGAACCAGGTGACCCACGAGTTTGTGGCGCTCAAG
CGGTTGCGGCTCGAGCTGGAGCGCGAGGGGTTCCCCATCACCGCCATCCGCGAGATCAAGCTCTT
GCAGCTGTTCGACCACCCCAACATCGTGCTGTTGTACGAGATGATGGTGGAGCACCACCAGGTGT
ACATGATTTTCGACTACTGCGACCACGACTTGATGGGCCTCTTGC
Found at i:401711 original size:21 final size:21
Alignment explanation
Indices: 401687--401736 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
401677 CGCACCCACC
*
401687 GGCCCAGCAGGCGCACCGTCA
1 GGCCCAGCAGGAGCACCGTCA
401708 GGCCCAGCAGGAGCACCGTCA
1 GGCCCAGCAGGAGCACCGTCA
401729 GGCCCAGC
1 GGCCCAGC
401737 TGCCATCCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.20, C:0.42, G:0.34, T:0.04
Consensus pattern (21 bp):
GGCCCAGCAGGAGCACCGTCA
Left flanking sequence: Indices 401187 -- 401686
GGGCTTCTACTTCCCCCTGGTGTTGGCTCGCCTGCCGGCGTGCCTTACCTAATGCGCGCCACCAG
AACAAAATTTTCTTACGGTTCAGAGGAGCAGCGATACACATGTCGGACAGATACCGCCCCACAGG
CCCTCGAGGCAGTCGCGACTACAACCTGGAGCCGCGTGGCGACCGGCGGGTGCCGCGGGGCGACT
CGTACCGCGACTCGTACCAGCCGGTGCGCGACCGTGCCGACCGTCGCGACCGCCACGACGGGCCC
AGCAGCTACGACAACTACCGGCGCCAGCGCGACGAGCCGGACCGGGACAGAGACTCGTGGGAGTC
CCGGGGACCGCGCGAGCCCTACCGCCGCCGCGGCGAGCGCGACCAGTACCGCCCGTACGACCGCG
ACGTGCCCAGTGGCGACAAGCGGCGGGCTCCGCCCCTGGGCCCGGCAGCGAAGCGGCGACCGCCC
GCGGGCCCTGCTGGCGCACCCACCGGGCCCGCTGGCGCACCCACC
Right flanking sequence: Indices 401737 -- 402236
TGCCATCCGCGCGCCACCCCCGGGTCCCAAGGCCGCACCCAGCGGGCCCAAGGCCACCACCGGAC
CCAAAGCCACCACCGGACCCAAGGCCACCAGCGGACCCAAGGTCCCGCCCAAGCCCACCGCCCGC
CCGCCCAAACGCGCGCCGCGCAAGTTGGCGCCGCACCAGCTCTACCTGGTGCAAACTAGCATGCC
CGAGATCTACAAACGCACCCAGCAGGTGGGCGAGGGCACCTACGGCAAGGTGTACAAGGCAGTGA
ACCAGGTGACCCACGAGTTTGTGGCGCTCAAGCGGTTGCGGCTCGAGCTGGAGCGCGAGGGGTTC
CCCATCACCGCCATCCGCGAGATCAAGCTCTTGCAGCTGTTCGACCACCCCAACATCGTGCTGTT
GTACGAGATGATGGTGGAGCACCACCAGGTGTACATGATTTTCGACTACTGCGACCACGACTTGA
TGGGCCTCTTGCTGCACCCCGAGATCGAGTTGGAGGAGAGCCACC
Found at i:401810 original size:18 final size:18
Alignment explanation
Indices: 401783--401843 Score: 104
Period size: 18 Copynumber: 3.4 Consensus size: 18
401773 ACCCAGCGGG
401783 CCCAAGGCCACCACCGGA
1 CCCAAGGCCACCACCGGA
*
401801 CCCAAAGCCACCACCGGA
1 CCCAAGGCCACCACCGGA
*
401819 CCCAAGGCCACCAGCGGA
1 CCCAAGGCCACCACCGGA
401837 CCCAAGG
1 CCCAAGG
401844 TCCCGCCCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.30, C:0.48, G:0.23, T:0.00
Consensus pattern (18 bp):
CCCAAGGCCACCACCGGA
Left flanking sequence: Indices 401283 -- 401782
CGATACACATGTCGGACAGATACCGCCCCACAGGCCCTCGAGGCAGTCGCGACTACAACCTGGAG
CCGCGTGGCGACCGGCGGGTGCCGCGGGGCGACTCGTACCGCGACTCGTACCAGCCGGTGCGCGA
CCGTGCCGACCGTCGCGACCGCCACGACGGGCCCAGCAGCTACGACAACTACCGGCGCCAGCGCG
ACGAGCCGGACCGGGACAGAGACTCGTGGGAGTCCCGGGGACCGCGCGAGCCCTACCGCCGCCGC
GGCGAGCGCGACCAGTACCGCCCGTACGACCGCGACGTGCCCAGTGGCGACAAGCGGCGGGCTCC
GCCCCTGGGCCCGGCAGCGAAGCGGCGACCGCCCGCGGGCCCTGCTGGCGCACCCACCGGGCCCG
CTGGCGCACCCACCGGCCCAGCAGGCGCACCGTCAGGCCCAGCAGGAGCACCGTCAGGCCCAGCT
GCCATCCGCGCGCCACCCCCGGGTCCCAAGGCCGCACCCAGCGGG
Right flanking sequence: Indices 401844 -- 402343
TCCCGCCCAAGCCCACCGCCCGCCCGCCCAAACGCGCGCCGCGCAAGTTGGCGCCGCACCAGCTC
TACCTGGTGCAAACTAGCATGCCCGAGATCTACAAACGCACCCAGCAGGTGGGCGAGGGCACCTA
CGGCAAGGTGTACAAGGCAGTGAACCAGGTGACCCACGAGTTTGTGGCGCTCAAGCGGTTGCGGC
TCGAGCTGGAGCGCGAGGGGTTCCCCATCACCGCCATCCGCGAGATCAAGCTCTTGCAGCTGTTC
GACCACCCCAACATCGTGCTGTTGTACGAGATGATGGTGGAGCACCACCAGGTGTACATGATTTT
CGACTACTGCGACCACGACTTGATGGGCCTCTTGCTGCACCCCGAGATCGAGTTGGAGGAGAGCC
ACCGCAAGTTTTTGTTCCGCCAGTTGATGGAGGGACTCAACTACCTACACAAAAAACGGGTGATC
CACCGCGACATCAAGGGGCTGAACATCTTGCTCGACGCGCTGGGC
Found at i:403218 original size:23 final size:23
Alignment explanation
Indices: 403191--403241 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
403181 CCACCGCGAG
403191 CCACCACGCCAGCCGGGCCCGAA
1 CCACCACGCCAGCCGGGCCCGAA
403214 CCACCACGCCAGCCGGGCCCGAA
1 CCACCACGCCAGCCGGGCCCGAA
403237 CCACC
1 CCACC
403242 CCTGAGGCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.22, C:0.55, G:0.24, T:0.00
Consensus pattern (23 bp):
CCACCACGCCAGCCGGGCCCGAA
Left flanking sequence: Indices 402691 -- 403190
GCTCTACGAGCAGATGATGACCCCAGGCTCGTTTGCGTTGGCCAAGCAGTTGTTGGAGATGAACC
CCGCGAAACGCATCACCGCCGCCGAGGCGTTGGCGCACCCGTGGTTTGCCGACGAGCCCGAGCCG
GCGCCGCTCACGTTTTTGAAGGACGTCCAGGGCGAGTGGCACGAGTTTGAGCTGAAAAAACGCCG
CCGCAAGGAGAAAAAACGCTTGGAGGACGAGGCCCGCGCCCGCAAGCACGACGACACCACCGCCA
CCACCACCCCGGCACCGCCCACGGCGCCGGCTCCCGACAAACTGGCGCCCAACTCCACCAGCATG
TCGGTGGGGCTGCCGCTCACCATGGTCTAATGTAGTTATGAATACACGAAGTTTGCATAAATTTG
CAGCCATTGCGAGCCCGCGGAGGCCACGCTGCACCCGTGTCTGTCACGAAGACGCCAATCATGGT
AAAAAATAACCGACGACGTTTCACGTTGGTGCGAGCCACCGCGAG
Right flanking sequence: Indices 403242 -- 403741
CCTGAGGCCCGCTGTGGGGTCAGGGGCCGCGGGGTGGTGCCTTACGTGTGCAGCAGGGTCAGGCG
AACGCGACGGCAAAATAGAAGACGCGATCAATTGTCGGCAATTTTCCACCGGTGTCGACAATTGG
CCGGCGCGTGATAACCGAGTGCCAGCGAAGCCACCCGAAGCCACCCGAGGTTCGCTACCGGGTGT
TCACGCGGCAACGGCTAATTTTAGCTTGCGGGTTTTGCGAGATATAATTCCGCGGCCGCCCAGGG
TTCGTGGGCTAATGACTGCGCCGGCGGCAATGCCGCAGGAGCCGGCCCGACCAGTGGCCAACTCC
GCCAGGCCGCCCGTCGACCCACCGGGCTTAGTAATTGCTGCATGGTCACAGGTGCCGTGACCACC
GCGTCGAGCAGGTGTAGCAACCTGGTGACGGACAAGCAACTATACTGACGAAACAAGCTGACGTA
GAGCCGAAAAGGCAGATAGAGTAATCAAAGAATCGCCAATCAAAC
Found at i:405466 original size:18 final size:18
Alignment explanation
Indices: 405443--405513 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
405433 ATCAACTGGT
405443 ACGGAGCCAACTGGTGTG
1 ACGGAGCCAACTGGTGTG
* *
405461 ACGGAGCTAATTTGGTGTG
1 ACGGAGCCAA-CTGGTGTG
* *
405480 ACGGAGCTAATTGGTGTG
1 ACGGAGCCAACTGGTGTG
*
405498 ACGTAGCCAACTGGTG
1 ACGGAGCCAACTGGTG
405514 CAAACTGTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
18 30 0.64
19 17 0.36
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.24
Consensus pattern (18 bp):
ACGGAGCCAACTGGTGTG
Left flanking sequence: Indices 404943 -- 405442
CCGACAAGCTCAAGTACCTGCCGTTGGAGAACCACTTCCCCGACTACACCGGGGGCGACAACATC
AACAAGGCCGCCAAGTACATTTTGTGGCGGTTCACCCAGCAGAACCGCCTGGGACTCAACATCTA
CCCGCACGTCACCCAGGCCACCGACACCTCCAACATCCAGCTAGTGTTTGCCGCCGTCAAGGAGA
CGATTTTGGAGAACTCCCTCAAGGACTCCGGGCTTCTTTGAGGCTCTTGCATGCTAATTTATTCA
GTTCCGTCCGCGCGCCGGCCGCGGGTCGCTTATGCCGCCGGGCCGGTGCCCGAGTATTTAACCGT
AACCTTTGGGGCCCTGAGCCCGCCGGTGTCCGGGCCGCCCCCGCTAATCAGTAGTTGTATACCAA
TGTACGCTCTAGAGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGGTACCAGTGGGTATG
AGGTGGTGCGAATTGGTAGAATTACTGGTGACGCAATCAACTGGT
Right flanking sequence: Indices 405514 -- 406013
CAAACTGTCGAGCCAACTGGTTCGAACAGAGCCAAGAGTAGCCTCAACTGGTACAAATAGCCAAT
TGGTTCGCGGAAAATGCTTGATACAAAGTCTAAATACATCACAGGAAATAGTCATCTACTAGACA
ATATCTTTTATGGTACCCTTATAGAGCTGTATGTACATACCAAGTGGTGCGGTCAATCGTGCCTG
TGTATTCAGAGCCTATGTATCTATAAGTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTT
AGGGGGAGAGGTTTCTCTGGGCTTGGGAGAGCTTTCTCTGGGCTGGGAAGGCTTGGGAGAAGATT
CTTTAGGAGGCTTGGGCGTGGATTCCTGGGGCTTGGATGTGGATTCCTGAGGCTTGGGAGACGAT
TCCCTGGGCTTGGACGGGGCTTCTCTGGGCTTGGGAGACGATTCCTTAGGCTTCGAAGACTCCTG
AGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGGG
Found at i:405478 original size:19 final size:18
Alignment explanation
Indices: 405443--405500 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
405433 ATCAACTGGT
* *
405443 ACGGAGCCAACTGGTGTG
1 ACGGAGCTAATTGGTGTG
405461 ACGGAGCTAATTTGGTGTG
1 ACGGAGCTAA-TTGGTGTG
405480 ACGGAGCTAATTGGTGTG
1 ACGGAGCTAATTGGTGTG
405498 ACG
1 ACG
405501 TAGCCAACTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 20 0.54
19 17 0.46
ACGTcount: A:0.22, C:0.16, G:0.38, T:0.24
Consensus pattern (18 bp):
ACGGAGCTAATTGGTGTG
Left flanking sequence: Indices 404943 -- 405442
CCGACAAGCTCAAGTACCTGCCGTTGGAGAACCACTTCCCCGACTACACCGGGGGCGACAACATC
AACAAGGCCGCCAAGTACATTTTGTGGCGGTTCACCCAGCAGAACCGCCTGGGACTCAACATCTA
CCCGCACGTCACCCAGGCCACCGACACCTCCAACATCCAGCTAGTGTTTGCCGCCGTCAAGGAGA
CGATTTTGGAGAACTCCCTCAAGGACTCCGGGCTTCTTTGAGGCTCTTGCATGCTAATTTATTCA
GTTCCGTCCGCGCGCCGGCCGCGGGTCGCTTATGCCGCCGGGCCGGTGCCCGAGTATTTAACCGT
AACCTTTGGGGCCCTGAGCCCGCCGGTGTCCGGGCCGCCCCCGCTAATCAGTAGTTGTATACCAA
TGTACGCTCTAGAGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGGTACCAGTGGGTATG
AGGTGGTGCGAATTGGTAGAATTACTGGTGACGCAATCAACTGGT
Right flanking sequence: Indices 405501 -- 406000
TAGCCAACTGGTGCAAACTGTCGAGCCAACTGGTTCGAACAGAGCCAAGAGTAGCCTCAACTGGT
ACAAATAGCCAATTGGTTCGCGGAAAATGCTTGATACAAAGTCTAAATACATCACAGGAAATAGT
CATCTACTAGACAATATCTTTTATGGTACCCTTATAGAGCTGTATGTACATACCAAGTGGTGCGG
TCAATCGTGCCTGTGTATTCAGAGCCTATGTATCTATAAGTTGTATGATTACTCGGAAGCCGCAG
GGGCCGAGGGCTTAGGGGGAGAGGTTTCTCTGGGCTTGGGAGAGCTTTCTCTGGGCTGGGAAGGC
TTGGGAGAAGATTCTTTAGGAGGCTTGGGCGTGGATTCCTGGGGCTTGGATGTGGATTCCTGAGG
CTTGGGAGACGATTCCCTGGGCTTGGACGGGGCTTCTCTGGGCTTGGGAGACGATTCCTTAGGCT
TCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAG
Found at i:405827 original size:20 final size:21
Alignment explanation
Indices: 405777--405821 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
405767 AGGGCTTAGG
*
405777 GGGAGAGGTTTCTCTGGGCTT
1 GGGAGAGCTTTCTCTGGGCTT
405798 GGGAGAGCTTTCTCTGGGC-T
1 GGGAGAGCTTTCTCTGGGCTT
405818 GGGA
1 GGGA
405822 AGGCTTGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.11, C:0.16, G:0.44, T:0.29
Consensus pattern (21 bp):
GGGAGAGCTTTCTCTGGGCTT
Left flanking sequence: Indices 405277 -- 405776
GGCCCTGAGCCCGCCGGTGTCCGGGCCGCCCCCGCTAATCAGTAGTTGTATACCAATGTACGCTC
TAGAGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGGTACCAGTGGGTATGAGGTGGTGC
GAATTGGTAGAATTACTGGTGACGCAATCAACTGGTACGGAGCCAACTGGTGTGACGGAGCTAAT
TTGGTGTGACGGAGCTAATTGGTGTGACGTAGCCAACTGGTGCAAACTGTCGAGCCAACTGGTTC
GAACAGAGCCAAGAGTAGCCTCAACTGGTACAAATAGCCAATTGGTTCGCGGAAAATGCTTGATA
CAAAGTCTAAATACATCACAGGAAATAGTCATCTACTAGACAATATCTTTTATGGTACCCTTATA
GAGCTGTATGTACATACCAAGTGGTGCGGTCAATCGTGCCTGTGTATTCAGAGCCTATGTATCTA
TAAGTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTTAGG
Right flanking sequence: Indices 405822 -- 406321
AGGCTTGGGAGAAGATTCTTTAGGAGGCTTGGGCGTGGATTCCTGGGGCTTGGATGTGGATTCCT
GAGGCTTGGGAGACGATTCCCTGGGCTTGGACGGGGCTTCTCTGGGCTTGGGAGACGATTCCTTA
GGCTTCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGGGAGG
CGTGGAGCCCTTCGGAGATGATCCCTTGGGAGAGGCTCCCTTGGGCGACGAGCTTCTGGGCACCG
TCTCCCCATTGGCATCCGCCTTGCCGCCAGCGCACTCGCCCTTCTCGCCCTTCTCGCCGTGGTCG
TGCTTGGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGCGCCCGGTTCTTGCC
GCCCCGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGGCTTCTTGGCCTTGT
CGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGGGGCT
Found at i:405904 original size:21 final size:21
Alignment explanation
Indices: 405822--405977 Score: 83
Period size: 21 Copynumber: 7.4 Consensus size: 21
405812 TGGGCTGGGA
* *
405822 AGGCTTGGGAGAAGATTCTTTAGG
1 AGGCTTGGGAGAGGATTC-CT--G
* *
405846 AGGCTTGGGCGTGGATTCCTG
1 AGGCTTGGGAGAGGATTCCTG
* *
405867 GGGCTT-GGATGTGGATTCCTG
1 AGGCTTGGGA-GAGGATTCCTG
*
405888 AGGCTTGGGAGACGATTCCCTG
1 AGGCTTGGGAGAGGATT-CCTG
* *
405910 -GGCTT-GGACGGGGCTTCTCTG
1 AGGCTTGGGA-GAGGATTC-CTG
* *
405931 -GGCTTGGGAGACGATTCCTT
1 AGGCTTGGGAGAGGATTCCTG
* *
405951 AGGCTT-CGA-A-GACTCCTG
1 AGGCTTGGGAGAGGATTCCTG
405969 AGGCTTGGG
1 AGGCTTGGG
405978 CGAAGCGGCC
Statistics
Matches: 104, Mismatches: 20, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
18 12 0.12
19 2 0.02
20 10 0.10
21 54 0.52
22 10 0.10
23 1 0.01
24 15 0.14
ACGTcount: A:0.15, C:0.19, G:0.39, T:0.28
Consensus pattern (21 bp):
AGGCTTGGGAGAGGATTCCTG
Left flanking sequence: Indices 405322 -- 405821
TTGTATACCAATGTACGCTCTAGAGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGGTAC
CAGTGGGTATGAGGTGGTGCGAATTGGTAGAATTACTGGTGACGCAATCAACTGGTACGGAGCCA
ACTGGTGTGACGGAGCTAATTTGGTGTGACGGAGCTAATTGGTGTGACGTAGCCAACTGGTGCAA
ACTGTCGAGCCAACTGGTTCGAACAGAGCCAAGAGTAGCCTCAACTGGTACAAATAGCCAATTGG
TTCGCGGAAAATGCTTGATACAAAGTCTAAATACATCACAGGAAATAGTCATCTACTAGACAATA
TCTTTTATGGTACCCTTATAGAGCTGTATGTACATACCAAGTGGTGCGGTCAATCGTGCCTGTGT
ATTCAGAGCCTATGTATCTATAAGTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTTAGG
GGGAGAGGTTTCTCTGGGCTTGGGAGAGCTTTCTCTGGGCTGGGA
Right flanking sequence: Indices 405978 -- 406477
CGAAGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGGGAGGCGTGGAGCCCTTCGGAGATGATCCCT
TGGGAGAGGCTCCCTTGGGCGACGAGCTTCTGGGCACCGTCTCCCCATTGGCATCCGCCTTGCCG
CCAGCGCACTCGCCCTTCTCGCCCTTCTCGCCGTGGTCGTGCTTGGGCCGGTAGGTGATGTGGGC
AAACGAGCCGTCGCGGTTGCGCAGCGCCCGGTTCTTGCCGCCCCGCGACCGAGGCTTGCGCGAGG
CCTCGTCGTCCTTGGGCTTTTCGGGCTTCTTGGCCTTGTCGTCGCGCGGCTTGTCGCTCTTGCGC
TTGCGAGGCTCGCGGGGCTCCTTGGGTTCTCTCGGCTCCTTGGGCTCTCTAGACTCCTTAGCTTC
TCTAGCCTCCTTCGCGTCCTTGCCTTCGTCGCCCTCCTTCTCCTTGGGCTCGCGACCCTTGCCTT
CGCGCCGAGAGTCCTTTCGGCCCTTGGTCTTGTCACGCTTCTCGC
Found at i:405905 original size:42 final size:42
Alignment explanation
Indices: 405845--405949 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
405835 GATTCTTTAG
* ** * *
405845 GAGGCTTGGGCGTGGATTCCTGGGGCTTGGATGTGGATTC-CT
1 GAGGCTTGGGAGACGATTCCT-GGGCTTGGACGGGGATTCTCT
*
405887 GAGGCTTGGGAGACGATTCCCTGGGCTTGGACGGGGCTTCTCT
1 GAGGCTTGGGAGACGATT-CCTGGGCTTGGACGGGGATTCTCT
405930 G-GGCTTGGGAGACGATTCCT
1 GAGGCTTGGGAGACGATTCCT
405950 TAGGCTTCGA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
41 3 0.05
42 46 0.84
43 6 0.11
ACGTcount: A:0.11, C:0.20, G:0.41, T:0.28
Consensus pattern (42 bp):
GAGGCTTGGGAGACGATTCCTGGGCTTGGACGGGGATTCTCT
Left flanking sequence: Indices 405345 -- 405844
AGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGGTACCAGTGGGTATGAGGTGGTGCGAA
TTGGTAGAATTACTGGTGACGCAATCAACTGGTACGGAGCCAACTGGTGTGACGGAGCTAATTTG
GTGTGACGGAGCTAATTGGTGTGACGTAGCCAACTGGTGCAAACTGTCGAGCCAACTGGTTCGAA
CAGAGCCAAGAGTAGCCTCAACTGGTACAAATAGCCAATTGGTTCGCGGAAAATGCTTGATACAA
AGTCTAAATACATCACAGGAAATAGTCATCTACTAGACAATATCTTTTATGGTACCCTTATAGAG
CTGTATGTACATACCAAGTGGTGCGGTCAATCGTGCCTGTGTATTCAGAGCCTATGTATCTATAA
GTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTTAGGGGGAGAGGTTTCTCTGGGCTTGG
GAGAGCTTTCTCTGGGCTGGGAAGGCTTGGGAGAAGATTCTTTAG
Right flanking sequence: Indices 405950 -- 406449
TAGGCTTCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGGGA
GGCGTGGAGCCCTTCGGAGATGATCCCTTGGGAGAGGCTCCCTTGGGCGACGAGCTTCTGGGCAC
CGTCTCCCCATTGGCATCCGCCTTGCCGCCAGCGCACTCGCCCTTCTCGCCCTTCTCGCCGTGGT
CGTGCTTGGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGCGCCCGGTTCTTG
CCGCCCCGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGGCTTCTTGGCCTT
GTCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGGGGCTCCTTGGGTTCTCTCGGCT
CCTTGGGCTCTCTAGACTCCTTAGCTTCTCTAGCCTCCTTCGCGTCCTTGCCTTCGTCGCCCTCC
TTCTCCTTGGGCTCGCGACCCTTGCCTTCGCGCCGAGAGTCCTTT
Found at i:406341 original size:18 final size:18
Alignment explanation
Indices: 406318--406352 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
406308 AGGCTCGCGG
*
406318 GGCTCCTTGGGTTCTCTC
1 GGCTCCTTGGGCTCTCTC
406336 GGCTCCTTGGGCTCTCT
1 GGCTCCTTGGGCTCTCT
406353 AGACTCCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.34, G:0.29, T:0.37
Consensus pattern (18 bp):
GGCTCCTTGGGCTCTCTC
Left flanking sequence: Indices 405818 -- 406317
GGGAAGGCTTGGGAGAAGATTCTTTAGGAGGCTTGGGCGTGGATTCCTGGGGCTTGGATGTGGAT
TCCTGAGGCTTGGGAGACGATTCCCTGGGCTTGGACGGGGCTTCTCTGGGCTTGGGAGACGATTC
CTTAGGCTTCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGG
GAGGCGTGGAGCCCTTCGGAGATGATCCCTTGGGAGAGGCTCCCTTGGGCGACGAGCTTCTGGGC
ACCGTCTCCCCATTGGCATCCGCCTTGCCGCCAGCGCACTCGCCCTTCTCGCCCTTCTCGCCGTG
GTCGTGCTTGGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGCGCCCGGTTCT
TGCCGCCCCGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGGCTTCTTGGCC
TTGTCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGG
Right flanking sequence: Indices 406353 -- 406852
AGACTCCTTAGCTTCTCTAGCCTCCTTCGCGTCCTTGCCTTCGTCGCCCTCCTTCTCCTTGGGCT
CGCGACCCTTGCCTTCGCGCCGAGAGTCCTTTCGGCCCTTGGTCTTGTCACGCTTCTCGCGAGGT
TCCCGAGGCTCACGAGACTCTCTAGGCTCACGCTCACGAGACTCACGCTCCCTGGGCTCGCGCTC
CTTGGGCTCACGCTCTCGCGACTCACGCTCACGAGACTCTCTCGGCTCCCGAGCCTCCCGAGTGT
CGCGCTCACGCGGCTCCTTCTTGTCTCTGCGGCCCTCCTTCTCCTTGGGCTCCTTCTGGTCCCGC
CCGCCACGCTTGCGTGCCTCGCGCTCGCGCGGCTTGCGCTCCTTGTCGTCCTTGTCCTTGCGCCC
ACCGCGCTTCTTGCTCCGCTCGCGGCTCTGCTGGCGCATGATGTTGTTGAGCTCGGCCTTGAAGT
CCGGCCGGTCCTCACCCTCCAGGGGCGGCACCACGGCCTCGGTCG
Found at i:406359 original size:18 final size:18
Alignment explanation
Indices: 406320--406379 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
406310 GCTCGCGGGG
* * *
406320 CTCCTTGGGTTCTCTCGG
1 CTCCTTGGGCTCTCTAGA
406338 CTCCTTGGGCTCTCTAGA
1 CTCCTTGGGCTCTCTAGA
* *
406356 CTCCTT-AGCTTCTCTAGC
1 CTCCTTGGGC-TCTCTAGA
406374 CTCCTT
1 CTCCTT
406380 CGCGTCCTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
17 2 0.06
18 34 0.94
ACGTcount: A:0.07, C:0.37, G:0.18, T:0.38
Consensus pattern (18 bp):
CTCCTTGGGCTCTCTAGA
Left flanking sequence: Indices 405820 -- 406319
GAAGGCTTGGGAGAAGATTCTTTAGGAGGCTTGGGCGTGGATTCCTGGGGCTTGGATGTGGATTC
CTGAGGCTTGGGAGACGATTCCCTGGGCTTGGACGGGGCTTCTCTGGGCTTGGGAGACGATTCCT
TAGGCTTCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGGGA
GGCGTGGAGCCCTTCGGAGATGATCCCTTGGGAGAGGCTCCCTTGGGCGACGAGCTTCTGGGCAC
CGTCTCCCCATTGGCATCCGCCTTGCCGCCAGCGCACTCGCCCTTCTCGCCCTTCTCGCCGTGGT
CGTGCTTGGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGCGCCCGGTTCTTG
CCGCCCCGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGGCTTCTTGGCCTT
GTCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGGGG
Right flanking sequence: Indices 406380 -- 406879
CGCGTCCTTGCCTTCGTCGCCCTCCTTCTCCTTGGGCTCGCGACCCTTGCCTTCGCGCCGAGAGT
CCTTTCGGCCCTTGGTCTTGTCACGCTTCTCGCGAGGTTCCCGAGGCTCACGAGACTCTCTAGGC
TCACGCTCACGAGACTCACGCTCCCTGGGCTCGCGCTCCTTGGGCTCACGCTCTCGCGACTCACG
CTCACGAGACTCTCTCGGCTCCCGAGCCTCCCGAGTGTCGCGCTCACGCGGCTCCTTCTTGTCTC
TGCGGCCCTCCTTCTCCTTGGGCTCCTTCTGGTCCCGCCCGCCACGCTTGCGTGCCTCGCGCTCG
CGCGGCTTGCGCTCCTTGTCGTCCTTGTCCTTGCGCCCACCGCGCTTCTTGCTCCGCTCGCGGCT
CTGCTGGCGCATGATGTTGTTGAGCTCGGCCTTGAAGTCCGGCCGGTCCTCACCCTCCAGGGGCG
GCACCACGGCCTCGGTCGTAGCCTCGGCCGCCACGGGGGTCGCCT
Found at i:406529 original size:15 final size:14
Alignment explanation
Indices: 406509--406586 Score: 50
Period size: 15 Copynumber: 5.2 Consensus size: 14
406499 ACTCTCTAGG
406509 CTCACGCTCACGAGA
1 CTCACGCTCACG-GA
* *
406524 CTCACGCTCCCTGGG
1 CTCACGCTCAC-GGA
* *
406539 CTCGCGCTC-CTTGGG
1 CTCACGCTCAC--GGA
*
406554 CTCACGCTCTCGCGA
1 CTCACGCTCACG-GA
406569 CTCACGCTCACGAGA
1 CTCACGCTCACG-GA
406584 CTC
1 CTC
406587 TCTCGGCTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
14 2 0.04
15 48 0.92
16 2 0.04
ACGTcount: A:0.14, C:0.44, G:0.23, T:0.19
Consensus pattern (14 bp):
CTCACGCTCACGGA
Left flanking sequence: Indices 406009 -- 406508
CTGGGAGGCGTGGAGCCCTTCGGAGATGATCCCTTGGGAGAGGCTCCCTTGGGCGACGAGCTTCT
GGGCACCGTCTCCCCATTGGCATCCGCCTTGCCGCCAGCGCACTCGCCCTTCTCGCCCTTCTCGC
CGTGGTCGTGCTTGGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGCGCCCGG
TTCTTGCCGCCCCGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGGCTTCTT
GGCCTTGTCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGGGGCTCCTTGGGTTCTC
TCGGCTCCTTGGGCTCTCTAGACTCCTTAGCTTCTCTAGCCTCCTTCGCGTCCTTGCCTTCGTCG
CCCTCCTTCTCCTTGGGCTCGCGACCCTTGCCTTCGCGCCGAGAGTCCTTTCGGCCCTTGGTCTT
GTCACGCTTCTCGCGAGGTTCCCGAGGCTCACGAGACTCTCTAGG
Right flanking sequence: Indices 406587 -- 407086
TCTCGGCTCCCGAGCCTCCCGAGTGTCGCGCTCACGCGGCTCCTTCTTGTCTCTGCGGCCCTCCT
TCTCCTTGGGCTCCTTCTGGTCCCGCCCGCCACGCTTGCGTGCCTCGCGCTCGCGCGGCTTGCGC
TCCTTGTCGTCCTTGTCCTTGCGCCCACCGCGCTTCTTGCTCCGCTCGCGGCTCTGCTGGCGCAT
GATGTTGTTGAGCTCGGCCTTGAAGTCCGGCCGGTCCTCACCCTCCAGGGGCGGCACCACGGCCT
CGGTCGTAGCCTCGGCCGCCACGGGGGTCGCCTCTTGCTGCTGGTCCACTGCGGGCTCGGCCACG
GGAGCGGGTTCTTCGTCGCGCGGCTCGTCGTGGCCGTCGTGGTCGTCGCTCTCCGGTGCCACCGG
CTCCGGTTGCGGCTCCTGCGACGGCGTCTTCTTCTTGAGCACCGTCGGCGGCTTCAGTTTCTTCG
CGTTGCGCTTGGCGTCGTCGTGGCCGTTGGCCTCGGGCTTTTTCG
Found at i:408086 original size:13 final size:13
Alignment explanation
Indices: 408031--408086 Score: 67
Period size: 13 Copynumber: 4.3 Consensus size: 13
408021 CTGAGTGGGG
408031 GGTGGTGGAAAGT
1 GGTGGTGGAAAGT
** * *
408044 CATGGTGGAAGGC
1 GGTGGTGGAAAGT
408057 GGTGGTGGAAAGT
1 GGTGGTGGAAAGT
*
408070 GGTGGTGGAAAGA
1 GGTGGTGGAAAGT
408083 GGTG
1 GGTG
408087 CTGGTGGGAG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.23, C:0.04, G:0.54, T:0.20
Consensus pattern (13 bp):
GGTGGTGGAAAGT
Left flanking sequence: Indices 407531 -- 408030
CTTCCTTCTCCAACCGGTCCAACTCTTGCTGGTGGTCGCTGTTGAAGGCCATGGTGGACTGGAAG
TCGTGGAAGTCGGCGGCGTCGATGTTGACGCGCTTGCCCGGGCGGTAGTAGGCGTCGAACCACTT
CTGGACCTTTTGGTAGTCGGAGTCGCCCGTCAACTCGACAAACGCCACCTTGCGGACGATGCCCA
GGGTGAGCGGGTTGGAGTGCGGGTCGAACACCACCTTTGTCTTGGCCACGGGGGTGTAGCGCAGC
TTGAAGAGGTCCTCGATGAACGAGTTGTCTGCTGTTAGCGGCAAGTTGGTGACCTTGACGATGTA
GGGCGGGCCCGAGCCGCCGCGCGGCATCAGGTGGCTGTGGCCGTAGCCGCTGGAGAAGGCGCTGC
TGCGGTAGCCGCCGGAGCTGCCGCCTATGGGCACCGAGATCAGCGCCATGTCGACCTCGGCGTCT
GCCCAGGAGCCTCCGTCGAACGCTAGGGGTTAGTACTGAGTGGGG
Right flanking sequence: Indices 408087 -- 408586
CTGGTGGGAGAATGGTAAGTTCGTGTGGTGGGTTGGTAGATTGGCCGGTTTGGTGGTTTGATGGT
TTGGTGGGTTGATGATTTGGTAGGTTGATGATTTGGTAGGTTGGTAGGTTGGTGGGTCGGTGGTC
TGGTGGTCTGGTAGTCTGGTAGTCTGGTAATTTGGTGATCTTGTAGTCTGGTGGCTTGGTGGTTT
GGTGGTGTGGATTTGGGGAACATTTGGGTGTTCAACGTGGTTCTGCGTGGTTGGGCCTAATTCTG
AGTGGATCACCATACTTCTGAGTAGTTCATCATGGTTCCTCGTGGTCCTCTGTGGTAATAGGATA
GCAGACTGAAATCATCATTGTGGTCACTCTGGTGGTCATCAACCGTGGTTTGTGTTTCGTCCTCG
GGGTAGGCCGTCTGGGTCCATCTGGGGTCCTCGAGCGTTGGCTGCTCACACTTGTGGTCCTTGGT
GTCCCTTGTATCCATCTCTCTTCATCTCTTCATTGTTCTCTTCGT
Found at i:408086 original size:26 final size:26
Alignment explanation
Indices: 408031--408086 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
408021 CTGAGTGGGG
* *
408031 GGTGGTGGAAAGTCATGGTGGAAGGC
1 GGTGGTGGAAAGTCATGGTGGAAAGA
**
408057 GGTGGTGGAAAGTGGTGGTGGAAAGA
1 GGTGGTGGAAAGTCATGGTGGAAAGA
408083 GGTG
1 GGTG
408087 CTGGTGGGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.04, G:0.54, T:0.20
Consensus pattern (26 bp):
GGTGGTGGAAAGTCATGGTGGAAAGA
Left flanking sequence: Indices 407531 -- 408030
CTTCCTTCTCCAACCGGTCCAACTCTTGCTGGTGGTCGCTGTTGAAGGCCATGGTGGACTGGAAG
TCGTGGAAGTCGGCGGCGTCGATGTTGACGCGCTTGCCCGGGCGGTAGTAGGCGTCGAACCACTT
CTGGACCTTTTGGTAGTCGGAGTCGCCCGTCAACTCGACAAACGCCACCTTGCGGACGATGCCCA
GGGTGAGCGGGTTGGAGTGCGGGTCGAACACCACCTTTGTCTTGGCCACGGGGGTGTAGCGCAGC
TTGAAGAGGTCCTCGATGAACGAGTTGTCTGCTGTTAGCGGCAAGTTGGTGACCTTGACGATGTA
GGGCGGGCCCGAGCCGCCGCGCGGCATCAGGTGGCTGTGGCCGTAGCCGCTGGAGAAGGCGCTGC
TGCGGTAGCCGCCGGAGCTGCCGCCTATGGGCACCGAGATCAGCGCCATGTCGACCTCGGCGTCT
GCCCAGGAGCCTCCGTCGAACGCTAGGGGTTAGTACTGAGTGGGG
Right flanking sequence: Indices 408087 -- 408586
CTGGTGGGAGAATGGTAAGTTCGTGTGGTGGGTTGGTAGATTGGCCGGTTTGGTGGTTTGATGGT
TTGGTGGGTTGATGATTTGGTAGGTTGATGATTTGGTAGGTTGGTAGGTTGGTGGGTCGGTGGTC
TGGTGGTCTGGTAGTCTGGTAGTCTGGTAATTTGGTGATCTTGTAGTCTGGTGGCTTGGTGGTTT
GGTGGTGTGGATTTGGGGAACATTTGGGTGTTCAACGTGGTTCTGCGTGGTTGGGCCTAATTCTG
AGTGGATCACCATACTTCTGAGTAGTTCATCATGGTTCCTCGTGGTCCTCTGTGGTAATAGGATA
GCAGACTGAAATCATCATTGTGGTCACTCTGGTGGTCATCAACCGTGGTTTGTGTTTCGTCCTCG
GGGTAGGCCGTCTGGGTCCATCTGGGGTCCTCGAGCGTTGGCTGCTCACACTTGTGGTCCTTGGT
GTCCCTTGTATCCATCTCTCTTCATCTCTTCATTGTTCTCTTCGT
Found at i:408144 original size:8 final size:8
Alignment explanation
Indices: 408133--408287 Score: 66
Period size: 8 Copynumber: 19.4 Consensus size: 8
408123 TAGATTGGCC
408133 GGTTTGGT
1 GGTTTGGT
*
408141 GGTTTGAT
1 GGTTTGGT
408149 GGTTTGGT
1 GGTTTGGT
* *
408157 GGGTTGAT
1 GGTTTGGT
*
408165 GATTTGGT
1 GGTTTGGT
*
408173 AGG-TTGAT
1 -GGTTTGGT
*
408181 GATTTGGT
1 GGTTTGGT
408189 AGG-TTGGT
1 -GGTTTGGT
408197 AGG-TTGGT
1 -GGTTTGGT
* *
408205 GGGTCGGT
1 GGTTTGGT
*
408213 GGTCTGGT
1 GGTTTGGT
*
408221 GGTCTGGT
1 GGTTTGGT
* *
408229 AGTCTGGT
1 GGTTTGGT
* *
408237 AGTCTGGT
1 GGTTTGGT
**
408245 AATTTGGT
1 GGTTTGGT
*
408253 GATCTT-GT
1 GGT-TTGGT
* *
408261 AGTCTGGT
1 GGTTTGGT
*
408269 GGCTTGGT
1 GGTTTGGT
408277 GGTTTGGT
1 GGTTTGGT
408285 GGT
1 GGT
408288 GTGGATTTGG
Statistics
Matches: 114, Mismatches: 27, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
7 4 0.04
8 106 0.93
9 4 0.04
ACGTcount: A:0.09, C:0.05, G:0.44, T:0.42
Consensus pattern (8 bp):
GGTTTGGT
Left flanking sequence: Indices 407633 -- 408132
CCGGGCGGTAGTAGGCGTCGAACCACTTCTGGACCTTTTGGTAGTCGGAGTCGCCCGTCAACTCG
ACAAACGCCACCTTGCGGACGATGCCCAGGGTGAGCGGGTTGGAGTGCGGGTCGAACACCACCTT
TGTCTTGGCCACGGGGGTGTAGCGCAGCTTGAAGAGGTCCTCGATGAACGAGTTGTCTGCTGTTA
GCGGCAAGTTGGTGACCTTGACGATGTAGGGCGGGCCCGAGCCGCCGCGCGGCATCAGGTGGCTG
TGGCCGTAGCCGCTGGAGAAGGCGCTGCTGCGGTAGCCGCCGGAGCTGCCGCCTATGGGCACCGA
GATCAGCGCCATGTCGACCTCGGCGTCTGCCCAGGAGCCTCCGTCGAACGCTAGGGGTTAGTACT
GAGTGGGGGGTGGTGGAAAGTCATGGTGGAAGGCGGTGGTGGAAAGTGGTGGTGGAAAGAGGTGC
TGGTGGGAGAATGGTAAGTTCGTGTGGTGGGTTGGTAGATTGGCC
Right flanking sequence: Indices 408288 -- 408787
GTGGATTTGGGGAACATTTGGGTGTTCAACGTGGTTCTGCGTGGTTGGGCCTAATTCTGAGTGGA
TCACCATACTTCTGAGTAGTTCATCATGGTTCCTCGTGGTCCTCTGTGGTAATAGGATAGCAGAC
TGAAATCATCATTGTGGTCACTCTGGTGGTCATCAACCGTGGTTTGTGTTTCGTCCTCGGGGTAG
GCCGTCTGGGTCCATCTGGGGTCCTCGAGCGTTGGCTGCTCACACTTGTGGTCCTTGGTGTCCCT
TGTATCCATCTCTCTTCATCTCTTCATTGTTCTCTTCGTATCGGGTTCCTTTCCATTTGCCTTCT
TTGCCTTCTTTCTCTTGTCTTCCTCGTGCTGGATCCGGTACTTACTGTCGTCCTTGAAGAACTCT
AACAAGCTCATTTTCTTCTTGTTGCCTGGCGGGTTAGTATGTGCCATGTCGGGTTCCGCTGCTTG
GGCGGTGGAGGCCGACTTACTCATGGTTGTTGGTGTTCAGGAGCT
Found at i:408194 original size:16 final size:16
Alignment explanation
Indices: 408135--408194 Score: 86
Period size: 16 Copynumber: 3.8 Consensus size: 16
408125 GATTGGCCGG
*
408135 TTTGGT-GGTTTGATGG
1 TTTGGTAGG-TTGATGA
*
408151 TTTGGTGGGTTGATGA
1 TTTGGTAGGTTGATGA
408167 TTTGGTAGGTTGATGA
1 TTTGGTAGGTTGATGA
408183 TTTGGTAGGTTG
1 TTTGGTAGGTTG
408195 GTAGGTTGGT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
16 39 0.95
17 2 0.05
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.47
Consensus pattern (16 bp):
TTTGGTAGGTTGATGA
Left flanking sequence: Indices 407635 -- 408134
GGGCGGTAGTAGGCGTCGAACCACTTCTGGACCTTTTGGTAGTCGGAGTCGCCCGTCAACTCGAC
AAACGCCACCTTGCGGACGATGCCCAGGGTGAGCGGGTTGGAGTGCGGGTCGAACACCACCTTTG
TCTTGGCCACGGGGGTGTAGCGCAGCTTGAAGAGGTCCTCGATGAACGAGTTGTCTGCTGTTAGC
GGCAAGTTGGTGACCTTGACGATGTAGGGCGGGCCCGAGCCGCCGCGCGGCATCAGGTGGCTGTG
GCCGTAGCCGCTGGAGAAGGCGCTGCTGCGGTAGCCGCCGGAGCTGCCGCCTATGGGCACCGAGA
TCAGCGCCATGTCGACCTCGGCGTCTGCCCAGGAGCCTCCGTCGAACGCTAGGGGTTAGTACTGA
GTGGGGGGTGGTGGAAAGTCATGGTGGAAGGCGGTGGTGGAAAGTGGTGGTGGAAAGAGGTGCTG
GTGGGAGAATGGTAAGTTCGTGTGGTGGGTTGGTAGATTGGCCGG
Right flanking sequence: Indices 408195 -- 408694
GTAGGTTGGTGGGTCGGTGGTCTGGTGGTCTGGTAGTCTGGTAGTCTGGTAATTTGGTGATCTTG
TAGTCTGGTGGCTTGGTGGTTTGGTGGTGTGGATTTGGGGAACATTTGGGTGTTCAACGTGGTTC
TGCGTGGTTGGGCCTAATTCTGAGTGGATCACCATACTTCTGAGTAGTTCATCATGGTTCCTCGT
GGTCCTCTGTGGTAATAGGATAGCAGACTGAAATCATCATTGTGGTCACTCTGGTGGTCATCAAC
CGTGGTTTGTGTTTCGTCCTCGGGGTAGGCCGTCTGGGTCCATCTGGGGTCCTCGAGCGTTGGCT
GCTCACACTTGTGGTCCTTGGTGTCCCTTGTATCCATCTCTCTTCATCTCTTCATTGTTCTCTTC
GTATCGGGTTCCTTTCCATTTGCCTTCTTTGCCTTCTTTCTCTTGTCTTCCTCGTGCTGGATCCG
GTACTTACTGTCGTCCTTGAAGAACTCTAACAAGCTCATTTTCTT
Found at i:409534 original size:15 final size:14
Alignment explanation
Indices: 409513--409556 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
409503 CATATACACT
409513 TTCTCCCCGTCTAC
1 TTCTCCCCGTCTAC
*
409527 TGTCTCCCCATCTAC
1 T-TCTCCCCGTCTAC
409542 TT-TCCCCGTCTAC
1 TTCTCCCCGTCTAC
409555 TT
1 TT
409557 TCCTCATCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 12 0.44
14 2 0.07
15 13 0.48
ACGTcount: A:0.09, C:0.45, G:0.07, T:0.39
Consensus pattern (14 bp):
TTCTCCCCGTCTAC
Left flanking sequence: Indices 409013 -- 409512
CCAATTAGGTGAGTGCCCCCACTTTCGTACATGCCACGAAATAGTAGAAGAAAACTGGCGGTGAG
CGGGGCTGGAGAAACTGGGTAAAAGTTGCATGCTCCGTGCCGTCTTTGCTCGCATGGGCAATAAC
TCCGCGTGTTTGTGCCCCCCCACGATGACGCCATACGGCGTTCCCCTCTTTGTGCGCGTCGGGCC
CAGGTGTTGACGTCAGCAGACCCGCCAGGGGGCTCATCAGAGGCTCATTAGAGTGGGTTGGTTGA
GGGAACCGGGTGTGGAGGTTGTGAATAGGCATCAGGCTAACAGATGTGGTGAACCCATTTGTTTC
TAGTGTCTAGCTGCTTTTAGTTTGGTTTGGATTCAGATCAGTAGCTATCACATTCTGTGCTCACG
GGCTCAATTCACGACCAGTTGCTTCACACGAGTGGACTTTTCAGCGGTATATTTACGAGTCAACG
CTACCACCCGTTGACAAAATCAATACCCACCAACTCATATACACT
Right flanking sequence: Indices 409557 -- 410056
TCCTCATCCACTTTCCCCATCCACTCTCCCATCCACTCTCCCGATCTACTCTCTACATCTACTGT
CTCCATCCACTCTCCCCATCTTCTTTTCTCCTTCTCTCTCCACACCCACTCTCATATCTCGTTAT
TCATTTACTCTTTTTTACGTAGTGTCAAAGTCGTCGTAGGTGGTGCGCCAGTCCTTCCAGAACCC
CTTAAAGAACTTCACACCCAACCCCACGTCCTTGGACCCAAGCATCGCCCGGATCAGGTGCATCG
ACAACTGGGGAATCCCCAAGTCGATGGTGCGCGCCCCCGTGGCAGACGAGATGTACGGCCCAATG
GTTCCTCCCGAAGGAGTCCCGTTGCGGATCTGGAAGTACTGCAACTCGTCGCCGTTGTCGCGCGC
CAACTGCTCCAACAACGCCACCCCGGGCCCGTCGGTGGCCATGTTGCCGTTGGGGTCCAACAGCA
ACGTCAACCCCTTGTTGGGCACCGGCTTGTGGCCCTCCAAGTAGT
Found at i:409553 original size:13 final size:13
Alignment explanation
Indices: 409516--409647 Score: 86
Period size: 13 Copynumber: 10.1 Consensus size: 13
409506 ATACACTTTC
*
409516 TCCCCGTCTACTGT
1 TCCCCATCTACT-T
409530 CTCCCCATCTACTT
1 -TCCCCATCTACTT
*
409544 TCCCCGTCTACTT
1 TCCCCATCTACTT
* *
409557 TCCTCATCCACTT
1 TCCCCATCTACTT
* *
409570 TCCCCATCCACTC
1 TCCCCATCTACTT
* *
409583 T-CCCATCCACTC
1 TCCCCATCTACTT
* *
409595 TCCCGATCTACTC
1 TCCCCATCTACTT
** *
409608 TCTACATCTACTG
1 TCCCCATCTACTT
* * *
409621 TCTCCATCCACTC
1 TCCCCATCTACTT
*
409634 TCCCCATCTTCTT
1 TCCCCATCTACTT
409647 T
1 T
409648 TCTCCTTCTC
Statistics
Matches: 96, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
12 12 0.12
13 72 0.75
14 1 0.01
15 11 0.11
ACGTcount: A:0.14, C:0.48, G:0.04, T:0.35
Consensus pattern (13 bp):
TCCCCATCTACTT
Left flanking sequence: Indices 409016 -- 409515
ATTAGGTGAGTGCCCCCACTTTCGTACATGCCACGAAATAGTAGAAGAAAACTGGCGGTGAGCGG
GGCTGGAGAAACTGGGTAAAAGTTGCATGCTCCGTGCCGTCTTTGCTCGCATGGGCAATAACTCC
GCGTGTTTGTGCCCCCCCACGATGACGCCATACGGCGTTCCCCTCTTTGTGCGCGTCGGGCCCAG
GTGTTGACGTCAGCAGACCCGCCAGGGGGCTCATCAGAGGCTCATTAGAGTGGGTTGGTTGAGGG
AACCGGGTGTGGAGGTTGTGAATAGGCATCAGGCTAACAGATGTGGTGAACCCATTTGTTTCTAG
TGTCTAGCTGCTTTTAGTTTGGTTTGGATTCAGATCAGTAGCTATCACATTCTGTGCTCACGGGC
TCAATTCACGACCAGTTGCTTCACACGAGTGGACTTTTCAGCGGTATATTTACGAGTCAACGCTA
CCACCCGTTGACAAAATCAATACCCACCAACTCATATACACTTTC
Right flanking sequence: Indices 409648 -- 410147
TCTCCTTCTCTCTCCACACCCACTCTCATATCTCGTTATTCATTTACTCTTTTTTACGTAGTGTC
AAAGTCGTCGTAGGTGGTGCGCCAGTCCTTCCAGAACCCCTTAAAGAACTTCACACCCAACCCCA
CGTCCTTGGACCCAAGCATCGCCCGGATCAGGTGCATCGACAACTGGGGAATCCCCAAGTCGATG
GTGCGCGCCCCCGTGGCAGACGAGATGTACGGCCCAATGGTTCCTCCCGAAGGAGTCCCGTTGCG
GATCTGGAAGTACTGCAACTCGTCGCCGTTGTCGCGCGCCAACTGCTCCAACAACGCCACCCCGG
GCCCGTCGGTGGCCATGTTGCCGTTGGGGTCCAACAGCAACGTCAACCCCTTGTTGGGCACCGGC
TTGTGGCCCTCCAAGTAGTTGCCGGAGAAGTTGGGGTTGACCAAGTGGATCACGTCCGCGGAAAG
GAAAATCAGGTTGGCGTACGCCACCCGCAACGCCTCCTCCACGGG
Found at i:409633 original size:26 final size:24
Alignment explanation
Indices: 409561--409635 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
409551 CTACTTTCCT
* *
409561 CATCCACTTTCCCCATCCACTCTCC
1 CATCCACTCT-CCCATCCACTCTCA
*
409586 CATCCACTCTCCCGATCTACTCTCTA
1 CATCCACTCTCCC-ATCCACTCTC-A
* *
409612 CATCTACTGTCTCCATCCACTCTC
1 CATCCACTCTC-CCATCCACTCTC
409636 CCCATCTTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
24 3 0.07
25 18 0.44
26 18 0.44
27 2 0.05
ACGTcount: A:0.17, C:0.49, G:0.03, T:0.31
Consensus pattern (24 bp):
CATCCACTCTCCCATCCACTCTCA
Left flanking sequence: Indices 409061 -- 409560
AGAAAACTGGCGGTGAGCGGGGCTGGAGAAACTGGGTAAAAGTTGCATGCTCCGTGCCGTCTTTG
CTCGCATGGGCAATAACTCCGCGTGTTTGTGCCCCCCCACGATGACGCCATACGGCGTTCCCCTC
TTTGTGCGCGTCGGGCCCAGGTGTTGACGTCAGCAGACCCGCCAGGGGGCTCATCAGAGGCTCAT
TAGAGTGGGTTGGTTGAGGGAACCGGGTGTGGAGGTTGTGAATAGGCATCAGGCTAACAGATGTG
GTGAACCCATTTGTTTCTAGTGTCTAGCTGCTTTTAGTTTGGTTTGGATTCAGATCAGTAGCTAT
CACATTCTGTGCTCACGGGCTCAATTCACGACCAGTTGCTTCACACGAGTGGACTTTTCAGCGGT
ATATTTACGAGTCAACGCTACCACCCGTTGACAAAATCAATACCCACCAACTCATATACACTTTC
TCCCCGTCTACTGTCTCCCCATCTACTTTCCCCGTCTACTTTCCT
Right flanking sequence: Indices 409636 -- 410135
CCCATCTTCTTTTCTCCTTCTCTCTCCACACCCACTCTCATATCTCGTTATTCATTTACTCTTTT
TTACGTAGTGTCAAAGTCGTCGTAGGTGGTGCGCCAGTCCTTCCAGAACCCCTTAAAGAACTTCA
CACCCAACCCCACGTCCTTGGACCCAAGCATCGCCCGGATCAGGTGCATCGACAACTGGGGAATC
CCCAAGTCGATGGTGCGCGCCCCCGTGGCAGACGAGATGTACGGCCCAATGGTTCCTCCCGAAGG
AGTCCCGTTGCGGATCTGGAAGTACTGCAACTCGTCGCCGTTGTCGCGCGCCAACTGCTCCAACA
ACGCCACCCCGGGCCCGTCGGTGGCCATGTTGCCGTTGGGGTCCAACAGCAACGTCAACCCCTTG
TTGGGCACCGGCTTGTGGCCCTCCAAGTAGTTGCCGGAGAAGTTGGGGTTGACCAAGTGGATCAC
GTCCGCGGAAAGGAAAATCAGGTTGGCGTACGCCACCCGCAACGC
Found at i:411393 original size:18 final size:18
Alignment explanation
Indices: 411349--411395 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
411339 GTGGAGGGGT
*
411349 GGTGTGGTAGGGTGGAGG
1 GGTGTGGTTGGGTGGAGG
**
411367 GGTGTGGTTGGGTGGTTG
1 GGTGTGGTTGGGTGGAGG
411385 GGTGTGGTTGG
1 GGTGTGGTTGG
411396 TATGTTATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.04, C:0.00, G:0.64, T:0.32
Consensus pattern (18 bp):
GGTGTGGTTGGGTGGAGG
Left flanking sequence: Indices 410849 -- 411348
TGGCGCCTACACCGCGCGCCGGGGACCACTCCTTGCCCACCACGAACGCGGCGAGCGACGTACCA
CTGCGGATGGTGAAGTACTTGCCCGCCTTGACGTCCCACTGGTCCTTCTCGTCCACGTACTTGAA
GCCCTTGGCACGCAATTGCGAGGCAAAGTGGTCCACCACGTGATAGATGGTGGGGTTTTTGGCGG
TGAAATCGACGTAGCGGTCTGCGTACTGGCGGTACCACTTGTCGTCGTAGGTCTGGATGGTGGGG
GTGGTTCCCTGGCGTTGGAGGGCCAATTGCGTGAGAAACTCCTGGAAGCCGTTGGCGGGGGTGGC
GTCCGGAGCGGACTCCAACTCCAAGTAGAGCTGGCGGATCTTTTCTTCCAAGTCGGAGGGGAGCA
GCATGGTGTGGAGATTGCCCGTGCGTCTGACTTAAATGGTTATCGGCTGTGTGCAGGGGAGCCGT
ACGGCACGGGGTTTGCGGAGTGGAAGGTGGATAAGGTGGAGGGGT
Right flanking sequence: Indices 411396 -- 411895
TATGTTATGGGTGTGTAATAGAGTGGTGTGAGAAGGTGTTTTTGCAATAGGGTCTAGATTATGTG
AAATGTTCAGTGGCTGGTACTGTGGTGTATTTCGGTTAGGTGAGATTGGCGGAATATGACTCAAT
GGGAAGAAGATAGATTGGCTAATACGTTGGGAGCTATGTGAGTCAGCATGAGTGGTGGGAAAAGG
TAGAAAGAGTGTTGAAGTGAGAAGTGTGTGCAAGTGATGTTTAGAAGCGTGGTATCTAGATAGAG
TTAAGAGTTGGCCACACAGATAATATTCGAAGAATAGCACTCAAAGTTTAGGGACTAGATGACTA
GCATCTGTAATAGTAGTGTCTAGAGTTACGGTTTTTGAACGGATAAACAAGACTGGTCTCGAAAT
GTTAGCATCCAGATGAGTATTCAATCGAATATTATCCAGAGTAATGATAACTAGGTCATAGCATC
ACCCTTACCCCATGGTTATTCCTACCACTGGTCTCCCAACTCTAT
Found at i:414384 original size:15 final size:15
Alignment explanation
Indices: 414364--414424 Score: 95
Period size: 15 Copynumber: 4.1 Consensus size: 15
414354 TGGTCGGGGT
*
414364 GTGAGGTACCAATGG
1 GTGAGCTACCAATGG
*
414379 GTGAGGTACCAATGG
1 GTGAGCTACCAATGG
414394 GTGAGCTACCAATGG
1 GTGAGCTACCAATGG
*
414409 GTGAGCTACCCATGG
1 GTGAGCTACCAATGG
414424 G
1 G
414425 GTTTTGTGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.25, C:0.18, G:0.38, T:0.20
Consensus pattern (15 bp):
GTGAGCTACCAATGG
Left flanking sequence: Indices 413864 -- 414363
ACCCAGGCCCACCACTCGTTGGCAGAGCACTTCTGCGGCAGCACTAACGCCCAGAGCGTGAGACA
GCATCCGCTCAAGTAGCAATACATCGGGAACGGATCGCGGTGCGGTTGGCGAACCTCGAGCACCA
AGAACAAGAAGGAGATGGCAAACACCACCGAGGACGCGATCCTGGTGTAGAAGTCTGGTTCCTCG
TCTTCGTCGGCGTTGTACAACGGCAAAACGGTTTTCTCGTCCATGATGTCGGCGGTGTATGTGTG
ATATATGTGAGAACAGAATGACCTCGTCCGATCTCTTAACTGTTTAAGTATAGGGCGTTTTGGTG
CATGCGCGCAGCTGCTGGCGAGAAGCCTGCATCGCGCTGAGCAAGGCAGACGCGCGGGCTGCGCA
ACCAAAGCACAGGTCGCGGGGAATAGCTTAATCAGCGGCCGGTGTTGCTTGAGGGTGGGCTAATT
TGTGAAATGCTTGGTAGTGGGGCAGGAGGTACGCGTGGTCGGGGT
Right flanking sequence: Indices 414425 -- 414924
GTTTTGTGATGTGGCTCATCAGGTGGTTGGGTATGCACTGGAAGTGTGGTTGCATGCAACATCGG
CGTGTAGTAGCCCATGCCTAAGAGGCATCGAACACAGGGCGAAACTCCGTGCGTTTTTGCCATAG
TGGTAGCGTACTCGTGGTTGGGGGTCGGGAACCAATGGCGTTAGGTAACGTGTCTCATGTAGTTG
TCTGGGTATCACCGGAAGAATGGTCCCATGCTTCATCGGCCTGTGATAACCTAGCCTCCGAGAAA
ATCGAAGCGAAACTCCGTGCGTATTCGCCATTGTAGAGCTTAGTCGTTAGGACGCGTAGCACACA
ACTTTCCCATCGTTCATCTCCAAAACTTTCCCTATCATTCCACTTCCCCCTTGGTTATCTAGTAC
CATTTATTACCCTATTAACGTGTCGTTCGCCATGGCCACCTGGGCCACTGGCAGGGCCATTCCGT
CGACACACGCCCGATATAGTAACCTACACAATAAAAGCAAAAACA
Found at i:416252 original size:24 final size:24
Alignment explanation
Indices: 416225--416270 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
416215 AACGCCAATG
416225 GGTCGAAGCCTTGTTGCCCATTCC
1 GGTCGAAGCCTTGTTGCCCATTCC
416249 GGTCGAAGCCTTGTTGCCCATT
1 GGTCGAAGCCTTGTTGCCCATT
416271 GAGGTTGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.30, G:0.26, T:0.30
Consensus pattern (24 bp):
GGTCGAAGCCTTGTTGCCCATTCC
Left flanking sequence: Indices 415725 -- 416224
ATGTCACAAAAAGGGCAGTGCCCGCATAAAGGGCCCCGGGACTTGCTTCCGCATCAATTACGTGG
CCGTCAGGGTGGACTCCGAGTGTCAGTTAGCTCAATTGCAGGCTTTAGATGTCACAATGCACGTT
TGCGACTGTAAGCGTATTACCCCTGGACTCCGTGTTTGACCCAGCAAACCTACCCTGCAACCAGA
TTTCTTTTACGTATACGAGGTAGAAAACACAGGTAGAACCCCAGGTAGAACGACGTCATCTACAG
CACATTGAGGAGTCACGAGAGTCTCCCTTGCTTGCATGAAAGTGTCGTGGCTTGTTTAGCCAATT
AACCTTCTCTCCCCTCCTTTCCCTACCTTATCTTTTCCGGCCCCTGCGTGTCCAGACGGCTGCGC
ACCCCCGTGGGGCCGAAGTTTGCCATAATGGAAAAAGTTGCTGGACCAGGTGGTTCTTGCTGAAC
CAGGTAATAATCAAGCACGTTGCAAGCAGACATTAAACGCCAATG
Right flanking sequence: Indices 416271 -- 416770
GAGGTTGCCTTCCACGTATGTCTAGATGGAGCTGGTGCATAAACAATAGGTCGTCTGTGGAGAAG
ATGGTGGTCCGGGGCTCCCGGATCCGTGTACCCCCCACTAGCAACCTTATTTGCACAATAGCACT
GAGATTCAGCCGTAGTTTGCTGGGGGTCTCCTATCCTGTTTGGGACGCCGCTACTTGCCCGCAAG
CCTATTTGGTCCTTAGCACAGAAGCCCTGGACGCTGCATGCCCGAAATAGGTACGGTAATAATAG
ATTGCAAGCATCTCAGCCATACTTGTCGGAGATATGGAGACAATGAGGGGAAGAGCGCGTCGAGA
TGAAATGTTGGTTAGCCGCGGGTCACAGTGCGTTTTGTGTATGGGGCTGTTCCATACTCCTTGCA
ACAAACGTTTCTGCTCTTTACAACGCACTATGCAACGTCTCTACAACGCTGATGCTCTTTGCAAC
GCCAACGTTACAACGGCTTTGTGCCTCTCGCCAAACCCGGTGGAC
Found at i:417166 original size:23 final size:23
Alignment explanation
Indices: 417136--417185 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
417126 ACCTCAAACA
*
417136 CTTTTTTATCTTCTCTCCCCACC
1 CTTTTTTACCTTCTCTCCCCACC
*
417159 CTTTTTTACCTTCTCTCTCCACC
1 CTTTTTTACCTTCTCTCCCCACC
417182 CTTT
1 CTTT
417186 CTTTCCGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.08, C:0.42, G:0.00, T:0.50
Consensus pattern (23 bp):
CTTTTTTACCTTCTCTCCCCACC
Left flanking sequence: Indices 416636 -- 417135
ATGGGGCTGTTCCATACTCCTTGCAACAAACGTTTCTGCTCTTTACAACGCACTATGCAACGTCT
CTACAACGCTGATGCTCTTTGCAACGCCAACGTTACAACGGCTTTGTGCCTCTCGCCAAACCCGG
TGGACCCCGGATCTACGGTGTTCTATTTCGTACCCCCGGGGGATACGCCGGTTACGATTGCACGA
GCCTCGTATTGCACAATGGAACACAGACCAAACTCTAGTATAATTGAATCGCGAGGGTGGCCTGC
AGTAGAACGTTCGCCAACTGTTATCGTCGTATGTTCTCTTGGGTCATACGAGGAAGAGAACGTCT
CACCATCAAATGTCCTACACTAGGTTCGTCTAGCATGGAGAGAATATCCACAGACGACCGAAGTA
GCCATCTGACACCAGACCATCGAAACCACGCTTCCAACCGACCCAATTCTATCCTGAACACAACC
CAACCAGTCATCTCAAAACAACAATGCCCCCACCAACCTCAAACA
Right flanking sequence: Indices 417186 -- 417685
CTTTCCGTTCCCACGTCTCCCTCCCTACCGCGCTCCGCCACCCCTGCACACAGCCGATCATAAAT
AGCATCATAGCCACGACGCGAGTATGGCGATGCCAATAGGGGTGTACCCCGAGGTGGCCCTCTAT
CTGACGCTGTCGACGGTCCGCAAGCCCACCAAGAAACGGGTGGTGCGCCCGGCCAACACCACCAC
CTACATTTTCCATGACCTTCTCGCGGTTAAGTACTTCCAGCTGGAGTTTGCCGACGAGTTCTGTG
TCATGGAGGACACCCAGGTGTGTGGCTTGGACATCTACCTCGTGGAGCAGTGGGTGGTGGACCGC
AAGATAGGCACTGTGGTGGCCGCGTACACCGGTAACGTCGAGAGCCGGGTCCGGGCCATCAAATT
CACTGTGGAACAGAAGGAGGCCCGGTGCTACCCGGTCAAGTTCCAGGAGTACTTGAACGAGTTGG
CCGTCAACCACGCACGCATCAAAACCATGGAGGAGCCCCCCGTGC
Found at i:420287 original size:15 final size:15
Alignment explanation
Indices: 420268--420387 Score: 102
Period size: 15 Copynumber: 8.1 Consensus size: 15
420258 AGATGATTAA
*
420268 TGGATGGCTGGAATA
1 TGGATGGCTGGAATG
* *
420283 TGGATGACTCGAAGTG
1 TGGATGGCTGGAA-TG
**
420299 TGGATGGCTGGGGTG
1 TGGATGGCTGGAATG
**
420314 TGGATGGCTGGGGTG
1 TGGATGGCTGGAATG
**
420329 TGGATGGCTGGGGTG
1 TGGATGGCTGGAATG
420344 TGGATGGCTGGAA-G
1 TGGATGGCTGGAATG
* *
420358 T-G-TGGGTGGAGTG
1 TGGATGGCTGGAATG
420371 TGGATGGCTGGGAATG
1 TGGATGGCT-GGAATG
420387 T
1 T
420388 ATGTTGGTGG
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
12 7 0.08
13 3 0.03
14 3 0.03
15 58 0.67
16 16 0.18
ACGTcount: A:0.15, C:0.07, G:0.52, T:0.27
Consensus pattern (15 bp):
TGGATGGCTGGAATG
Left flanking sequence: Indices 419768 -- 420267
CGGTGGTGATGACGGTGTACAACGCCGTTGCCTACGTGTTCCAGGCGGTGCACTTTGACCGGGCC
AACATGAACTTGGACCGGATCCGCAAGCTGTGGATCATGTTGGATCCCAACCGCACGTTGATCAC
GCGGGCGTACTCGCTCATGGGCAAGCGGCCGTCGCGCAACCTGGTGGCGCTGGCGGAGAGCAAGG
ACCGGTTTGAGGACGCGGACATTATGGACGACGACCCGATGGCGGGGACGTTTGGCGCGAGCTCG
CCCGAGCCCGAGACGGACACCGTGGTGACGGACTCGCCCAGCCAGGTGACCGACGAGGACGACCC
GTTGTACAAGGGGGACTTTGAGGAGGACACGCTAGACGATACTAGAGACTATTAATTGCATATAT
TAGAGGAAGGTTGTAGGAACCGGTGAATGAATGTGGGTGTGTGGTAGTGAATGTGGTTGGAAGGT
GGTTGGTGGTTTGTGGGGGTGTGGGTGGTTGATGTAGATGATTAA
Right flanking sequence: Indices 420388 -- 420887
ATGTTGGTGGAAGTGAATGGCCGATGGTTGATCCATGGCTGTTAAGTTTGGCAGACAAAAAGGTG
GTGTCTTACCGTCCACGCCGTCTAGTGCCTCTAAGCCAAGACTATTATCATGGCAACAACCACAA
CAACCCCTACCATGCCTGACCCAGAACCATAACTTCGTGATACCTCATGGCTCTGCTAGTTCAAC
AAGATCCACCTCAATATCATTATGAATCACGTCCTCCGGCAGGAGCGTTCGCTCCAACAGGAACG
TAGGCGAGTTGGTAGCCGCCAGCGGCCACGACCCGTCCGAGCCAAGCAGAATCGTCGGACTGGGG
ATGCTACTCATGCTCATGGGCCGGTCAAGCGGCAACATGATCAGATCGCGCTTGGACCGCGTCCG
CACCTGGGGCGTCTGCTGGATGGGCGGAAGCTCGGGTTCCTGCTGCTCAATCAGCTTGAAAATCG
TGTTCATGTCGCGGATGAGCTGGTTCACCTCCTCCTGGTACAGCC
Found at i:420332 original size:30 final size:30
Alignment explanation
Indices: 420296--420382 Score: 119
Period size: 30 Copynumber: 3.0 Consensus size: 30
420286 ATGACTCGAA
420296 GTGTGGATGGCTGGGGTGTGGATGGCTGGG
1 GTGTGGATGGCTGGGGTGTGGATGGCTGGG
*
420326 GTGTGGATGGCTGGGGTGTGGATGGCTGGAA
1 GTGTGGATGGCTGGGGTGTGGATGGCTGG-G
*
420357 GTGT-G--GG-TGGAGTGTGGATGGCTGGG
1 GTGTGGATGGCTGGGGTGTGGATGGCTGGG
420383 AATGTATGTT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
27 17 0.32
28 2 0.04
30 30 0.57
31 4 0.08
ACGTcount: A:0.09, C:0.06, G:0.59, T:0.26
Consensus pattern (30 bp):
GTGTGGATGGCTGGGGTGTGGATGGCTGGG
Left flanking sequence: Indices 419796 -- 420295
TGCCTACGTGTTCCAGGCGGTGCACTTTGACCGGGCCAACATGAACTTGGACCGGATCCGCAAGC
TGTGGATCATGTTGGATCCCAACCGCACGTTGATCACGCGGGCGTACTCGCTCATGGGCAAGCGG
CCGTCGCGCAACCTGGTGGCGCTGGCGGAGAGCAAGGACCGGTTTGAGGACGCGGACATTATGGA
CGACGACCCGATGGCGGGGACGTTTGGCGCGAGCTCGCCCGAGCCCGAGACGGACACCGTGGTGA
CGGACTCGCCCAGCCAGGTGACCGACGAGGACGACCCGTTGTACAAGGGGGACTTTGAGGAGGAC
ACGCTAGACGATACTAGAGACTATTAATTGCATATATTAGAGGAAGGTTGTAGGAACCGGTGAAT
GAATGTGGGTGTGTGGTAGTGAATGTGGTTGGAAGGTGGTTGGTGGTTTGTGGGGGTGTGGGTGG
TTGATGTAGATGATTAATGGATGGCTGGAATATGGATGACTCGAA
Right flanking sequence: Indices 420383 -- 420882
AATGTATGTTGGTGGAAGTGAATGGCCGATGGTTGATCCATGGCTGTTAAGTTTGGCAGACAAAA
AGGTGGTGTCTTACCGTCCACGCCGTCTAGTGCCTCTAAGCCAAGACTATTATCATGGCAACAAC
CACAACAACCCCTACCATGCCTGACCCAGAACCATAACTTCGTGATACCTCATGGCTCTGCTAGT
TCAACAAGATCCACCTCAATATCATTATGAATCACGTCCTCCGGCAGGAGCGTTCGCTCCAACAG
GAACGTAGGCGAGTTGGTAGCCGCCAGCGGCCACGACCCGTCCGAGCCAAGCAGAATCGTCGGAC
TGGGGATGCTACTCATGCTCATGGGCCGGTCAAGCGGCAACATGATCAGATCGCGCTTGGACCGC
GTCCGCACCTGGGGCGTCTGCTGGATGGGCGGAAGCTCGGGTTCCTGCTGCTCAATCAGCTTGAA
AATCGTGTTCATGTCGCGGATGAGCTGGTTCACCTCCTCCTGGTA
Found at i:420333 original size:61 final size:57
Alignment explanation
Indices: 420268--420382 Score: 140
Period size: 61 Copynumber: 1.9 Consensus size: 57
420258 AGATGATTAA
*
420268 TGGATGGCTGGAATATGGATGACTCGAAGTGTGGATGGCTGGGGTGTGGATGGCTGGGGTG
1 TGGATGGCTGGAATATGGATGACTCGAAGTGT-G--GG-TGGAGTGTGGATGGCTGGGGTG
** * * *
420329 TGGATGGCTGGGGTGTGGATGGCTGGAAGTGTGGGTGGAGTGTGGATGGCTGGG
1 TGGATGGCTGGAATATGGATGACTCGAAGTGTGGGTGGAGTGTGGATGGCTGGG
420383 AATGTATGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
57 18 0.38
58 2 0.04
60 1 0.02
61 27 0.56
ACGTcount: A:0.14, C:0.07, G:0.53, T:0.26
Consensus pattern (57 bp):
TGGATGGCTGGAATATGGATGACTCGAAGTGTGGGTGGAGTGTGGATGGCTGGGGTG
Left flanking sequence: Indices 419768 -- 420267
CGGTGGTGATGACGGTGTACAACGCCGTTGCCTACGTGTTCCAGGCGGTGCACTTTGACCGGGCC
AACATGAACTTGGACCGGATCCGCAAGCTGTGGATCATGTTGGATCCCAACCGCACGTTGATCAC
GCGGGCGTACTCGCTCATGGGCAAGCGGCCGTCGCGCAACCTGGTGGCGCTGGCGGAGAGCAAGG
ACCGGTTTGAGGACGCGGACATTATGGACGACGACCCGATGGCGGGGACGTTTGGCGCGAGCTCG
CCCGAGCCCGAGACGGACACCGTGGTGACGGACTCGCCCAGCCAGGTGACCGACGAGGACGACCC
GTTGTACAAGGGGGACTTTGAGGAGGACACGCTAGACGATACTAGAGACTATTAATTGCATATAT
TAGAGGAAGGTTGTAGGAACCGGTGAATGAATGTGGGTGTGTGGTAGTGAATGTGGTTGGAAGGT
GGTTGGTGGTTTGTGGGGGTGTGGGTGGTTGATGTAGATGATTAA
Right flanking sequence: Indices 420383 -- 420882
AATGTATGTTGGTGGAAGTGAATGGCCGATGGTTGATCCATGGCTGTTAAGTTTGGCAGACAAAA
AGGTGGTGTCTTACCGTCCACGCCGTCTAGTGCCTCTAAGCCAAGACTATTATCATGGCAACAAC
CACAACAACCCCTACCATGCCTGACCCAGAACCATAACTTCGTGATACCTCATGGCTCTGCTAGT
TCAACAAGATCCACCTCAATATCATTATGAATCACGTCCTCCGGCAGGAGCGTTCGCTCCAACAG
GAACGTAGGCGAGTTGGTAGCCGCCAGCGGCCACGACCCGTCCGAGCCAAGCAGAATCGTCGGAC
TGGGGATGCTACTCATGCTCATGGGCCGGTCAAGCGGCAACATGATCAGATCGCGCTTGGACCGC
GTCCGCACCTGGGGCGTCTGCTGGATGGGCGGAAGCTCGGGTTCCTGCTGCTCAATCAGCTTGAA
AATCGTGTTCATGTCGCGGATGAGCTGGTTCACCTCCTCCTGGTA
Found at i:425375 original size:38 final size:40
Alignment explanation
Indices: 425322--425403 Score: 150
Period size: 38 Copynumber: 2.1 Consensus size: 40
425312 GTAGGGAATT
425322 GGGGTGTGGGAGTGACGCAATCAGATAAGCTCGGTTAG-C
1 GGGGTGTGGGAGTGACGCAATCAGATAAGCTCGGTTAGTC
425361 GGGG-GTGGGAGTGACGCAATCAGATAAGCTCGGTTAGTC
1 GGGGTGTGGGAGTGACGCAATCAGATAAGCTCGGTTAGTC
425400 GGGG
1 GGGG
425404 AGGGAGGCAC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 33 0.79
39 9 0.21
ACGTcount: A:0.22, C:0.15, G:0.44, T:0.20
Consensus pattern (40 bp):
GGGGTGTGGGAGTGACGCAATCAGATAAGCTCGGTTAGTC
Left flanking sequence: Indices 424822 -- 425321
CGGTAATGAAGTGTGTTGGGGACACCTGTGCTGTGTCTGGGTTCTGGGAGGTGGTCAATGGCGTG
CCGGAGCTTCTCCCGTCCGATAATGATGCCATGCTCAGGATCAGGTACTACAGCCGCACCATGTG
GATGTTCCTTAGCAATGGGCGCCAATTTATCAAGGCCTACAACATAAGACTCGATAACACTACAG
TGACGTATACAGTGGACGGGTCGCGTATACACTTCGGGTTTGTGTCCAGCGAAGGTCGGGTGCAC
CAGTTTATTGTCGAGGCAGAGAACCGGTTTCTCGCCTCCGAGGTATACGAGAGCATGATTGAGTA
CATGCAGGTGCCCAATGGGTTGGACGACACTGCCAAACAGGGGCCACTGGCTGTGTGTGCTGGGG
AACACGCCACGGTGAAGCAGATCGCCTCGGCTAAAATTATTGGATAGGGAATAAAGGTTTTGATT
AGCACAACACGACGCAATGTCGCGGGGTAAGTGGGGTAGGGAATT
Right flanking sequence: Indices 425404 -- 425903
AGGGAGGCACGACATCCAGCCTGATTTTTAATTGTGAGCTTAATCGGGCATTCCACAACCCCTGT
TTGTTTGCAGACTATCAATTGCGGGCTCTTCCCTACGTCGTATACCCTTATAGCTCAGCCTACAC
TCACTTCCACTTTTCATTATCCATTATAATACATCTAGCACTGCTAGTTAGGCGCCGTAGCCCTT
TGCAATAAGAATCTTTTCGATGTCCAACCAAAAATCACGCACAATCGCCTTGTCACGGAACCGTT
TGTCGCCACGGTCAACCTTGATGTCGTGGACGTTCCACGTAGCGAGCGCCAGCGGGGTCGGGTCA
CCCGAGTACCCCAAGTAGAACCCGGGGTAGTGCTGGAAAAGCTGCTCGGGTTTCAGGTACTTGTA
CTTGGCAAACTGCCATGCCTGACCGGTGGTGAAAATGGCAATCACCCGGTCCCAGTACTCGGGTT
TGGTGAACAAGTCGACGTTGTCCACCACCATGATCTGGTGGCCCG
Found at i:426797 original size:13 final size:14
Alignment explanation
Indices: 426759--426794 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
426749 GAGTAATTGT
*
426759 AGTGTTGTTTGGCC
1 AGTGTTGTTGGGCC
426773 AGTGTTGTTGGGCC
1 AGTGTTGTTGGGCC
*
426787 TGTGTTGT
1 AGTGTTGT
426795 GGGTTTGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.06, C:0.11, G:0.39, T:0.44
Consensus pattern (14 bp):
AGTGTTGTTGGGCC
Left flanking sequence: Indices 426259 -- 426758
GCCCTTGGTCTCAGCTTGCTCCTCACCCTGGATAAACGTACACGTCTCCAGGTTCCCCGCCAACC
ACGTCAGAAGCTCGGTCTTGACAAGGAACTTGAAGTCGGGAATGCCCTTCTCAGCACACTGGTTA
CGGTAGTCCACAATCAGCAGCTTGTCGTGTAGCCACGCAAAGATCACCGCCCGCAACAGCTGGGG
CTTGTCTTCGTTGTAGAAGTTGGTTGTTTGATCGAGCAGGTGCTTCTTGCCACCAAACTCAGCGT
CGGTGGCGTCCTGGATCTCGCATGCCGCGCCGTCCTTGGAGAACGTGATGCTGCCCCCCTTGGTG
GTCACGTCGCGGAGGTCGTGAAGCACCGTCATGTTGTGGTCGCGGTGGTGCAGAGGTTGCAGTGA
AAAATAGCCGCACTGGTGAAAAGTGACGGCTGGGATGAGAGGACGTGGGTGGGACGAACTGTGGG
GATGAAGACCTTCGGGTGGGAAGTGGTCGAGTCGAGAGTAATTGT
Right flanking sequence: Indices 426795 -- 427294
GGGTTTGGCTGGGGACGTTTGTGGTTCGTGCCAATGGAAAAACGTTATCCAGCTGAAGAAGTATC
GTGGAGTTCAAACAAACGGCGGAGAGAAAAGTTTGGATGAGTATAACCAATGAAAGCAAAACCTT
TGTCCAAAGAATTCATCTCTTACCCTCCTCCTTGGACCTGCTACTGCTCTCTCATATTCGAAATT
TGGAACACACACATCACCGTAGAGCCAAAACTAACAAGAGCACGTTCAGGTTAGAACGGGAACCC
CTCTTTCCAGCGTTTCCGTCTACAATCACACCTCTCTATCTACTATCAAACCTCTTCATCATTTT
TGTACACGTTCCTCACACCCGTCGACCTACCCACCGGCACATTTGTGCGCATCTGCACATCACCT
CACCATGCTTTCCCCCGAAGTGCTCAAACAGGTAGAGCCCGTGGTGGCCTCCTTGAAGCGACAGC
AGATCGAGGCAGGCAAGGCCACGGCGGTGGCTGTGGCCCAGCTCC
Found at i:430674 original size:24 final size:24
Alignment explanation
Indices: 430638--430755 Score: 104
Period size: 24 Copynumber: 5.2 Consensus size: 24
430628 TTGCGGTGGA
* *
430638 AGTCTTCCACTTGTACTTAGTCAC
1 AGTCTTCCACTTGTAATCAGTCAC
* *
430662 AGTCTTCCCCTTGTAATCAGTGAC
1 AGTCTTCCACTTGTAATCAGTCAC
* *
430686 AG---T---CTTGTGATCAGTAAC
1 AGTCTTCCACTTGTAATCAGTCAC
430704 AGTCTTCCACTTGTAATCAGTCAC
1 AGTCTTCCACTTGTAATCAGTCAC
* * * *
430728 AGTCGTCCCCTTGTTATCGGTCAC
1 AGTCTTCCACTTGTAATCAGTCAC
430752 AGTC
1 AGTC
430756 GCAGTCACAG
Statistics
Matches: 76, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
18 15 0.20
21 2 0.03
24 59 0.78
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (24 bp):
AGTCTTCCACTTGTAATCAGTCAC
Left flanking sequence: Indices 430138 -- 430637
CGTGAGGAAATGGGGAGACTGCAAAGTGGCGGAAGGAGTGGGCAATTGCGTTTGTGGTGGGTGGG
GTTGAGAATTGGAAGTTGAATGGGTCTGTTGATGCTGTGGTTGCCACGTGGGGTGGGTGGAGTGG
TTGCAAATCTCAACTACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGA
TTGCTCTGGCTCTATGTAGGACACGGGATAGGGTACGTGGTAGTTACAGTCACGGGGCACTTCCA
TCCCTTGATAGTTTTGGAGACCGTTCTCGTACAGGTGGGACAGGTATTGGGCAAGGTGCTGGTGA
CCGTGCCCTTTGGACAGCCGCAGGTACCGGGAACGCGGACAGTTTTAGTGTGCTTACAGGTGAAC
TTCGACGGGCACGGAATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAAC
AGTGGGAAGCGCCGGACACGTCCTACAGGGCAAAGTTGCGGTGGA
Right flanking sequence: Indices 430756 -- 431255
GCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGT
CACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAG
TCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCT
GTCACAGTCGCAGTTACAGTCTTCCACTTGTAATCAGTCACAGTAGTCCCCTTGTTATCAGTGAC
AGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTACT
CAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACA
GTGTTTGGGCAGGGCGTGTAGGCAGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTT
TGGGTTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGA
Found at i:430692 original size:18 final size:18
Alignment explanation
Indices: 430671--430709 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
430661 CAGTCTTCCC
*
430671 CTTGTAATCAGTGACAGT
1 CTTGTAATCAGTAACAGT
*
430689 CTTGTGATCAGTAACAGT
1 CTTGTAATCAGTAACAGT
430707 CTT
1 CTT
430710 CCACTTGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (18 bp):
CTTGTAATCAGTAACAGT
Left flanking sequence: Indices 430171 -- 430670
AGGAGTGGGCAATTGCGTTTGTGGTGGGTGGGGTTGAGAATTGGAAGTTGAATGGGTCTGTTGAT
GCTGTGGTTGCCACGTGGGGTGGGTGGAGTGGTTGCAAATCTCAACTACGTGGGAAACATTCAAT
TACTACAAAAAGGCTACTGGCAAAAGAACAGATTGCTCTGGCTCTATGTAGGACACGGGATAGGG
TACGTGGTAGTTACAGTCACGGGGCACTTCCATCCCTTGATAGTTTTGGAGACCGTTCTCGTACA
GGTGGGACAGGTATTGGGCAAGGTGCTGGTGACCGTGCCCTTTGGACAGCCGCAGGTACCGGGAA
CGCGGACAGTTTTAGTGTGCTTACAGGTGAACTTCGACGGGCACGGAATAGTTGACGTTCGTGTG
ATGGGACAGGGACATGGGTGTGGCACGGTAACAGTGGGAAGCGCCGGACACGTCCTACAGGGCAA
AGTTGCGGTGGAAGTCTTCCACTTGTACTTAGTCACAGTCTTCCC
Right flanking sequence: Indices 430710 -- 431209
CCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCGGTCACAGTCGCAGTCACAGTCTTCCACT
TGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAA
TCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCC
CTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTTACAG
TCTTCCACTTGTAATCAGTCACAGTAGTCCCCTTGTTATCAGTGACAGTCGCAGTCACAGTCTTC
CATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTACTCAGTCACCGCTGTGGGGCA
GATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTTTGGGCAGGGCGTGT
AGGCAGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCT
Found at i:430775 original size:60 final size:60
Alignment explanation
Indices: 430638--431056 Score: 370
Period size: 60 Copynumber: 6.5 Consensus size: 60
430628 TTGCGGTGGA
* * * * *
430638 AGTCTTCCACTTGTACTTAGTCACAGTCTTCCCCTTGTAATCAGTGACAGTCTTGTGATCAGTAA
1 AGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTAATCAGTCACAGTC----G--CAGTCA
430703 C
60 C
* *
430704 AGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCGGTCACAGTCGCAGTCAC
1 AGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTAATCAGTCACAGTCGCAGTCAC
*
430764 AGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCAC
1 AGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTAATCAGTCACAGTCGCAGTCAC
* * * *
430824 AGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCG
1 AGTCTTCCACTTGTAATCAGTCACA------GTC---GTC--CC-CTTGTAATCAGTCACAGTCG
430889 CAGTCAC
54 CAGTCAC
* * * *
430896 AGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCG
1 AGTCTTCCACTTGTAATCAGT--C---A-CAGT--C-GTC--CC-CTTGTAATCAGTCACAGTCG
*
430961 CAGTTAC
54 CAGTCAC
* * *
430968 AGTCTTCCACTTGTAATCAGTCACAGTAGTCCCCTTGTTATCAGTGACAGTCGCAGTCAC
1 AGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTAATCAGTCACAGTCGCAGTCAC
* *
431028 AGTCTTCCATTTGTAATCTGTCACAGTCG
1 AGTCTTCCACTTGTAATCAGTCACAGTCG
431057 CAGTCTTAGT
Statistics
Matches: 306, Mismatches: 27, Indels: 46
0.81 0.07 0.12
Matches are distributed among these distances:
60 136 0.44
61 2 0.01
62 1 0.00
63 3 0.01
66 53 0.17
67 1 0.00
69 3 0.01
70 1 0.00
71 2 0.01
72 99 0.32
74 2 0.01
77 1 0.00
78 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (60 bp):
AGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTAATCAGTCACAGTCGCAGTCAC
Left flanking sequence: Indices 430138 -- 430637
CGTGAGGAAATGGGGAGACTGCAAAGTGGCGGAAGGAGTGGGCAATTGCGTTTGTGGTGGGTGGG
GTTGAGAATTGGAAGTTGAATGGGTCTGTTGATGCTGTGGTTGCCACGTGGGGTGGGTGGAGTGG
TTGCAAATCTCAACTACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGA
TTGCTCTGGCTCTATGTAGGACACGGGATAGGGTACGTGGTAGTTACAGTCACGGGGCACTTCCA
TCCCTTGATAGTTTTGGAGACCGTTCTCGTACAGGTGGGACAGGTATTGGGCAAGGTGCTGGTGA
CCGTGCCCTTTGGACAGCCGCAGGTACCGGGAACGCGGACAGTTTTAGTGTGCTTACAGGTGAAC
TTCGACGGGCACGGAATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAAC
AGTGGGAAGCGCCGGACACGTCCTACAGGGCAAAGTTGCGGTGGA
Right flanking sequence: Indices 431057 -- 431556
CAGTCTTAGTCTTCCACTTGTACTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTG
ACACGACACTTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCAGGTCCGGTAGATGTGGG
AGACACACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGG
TAGACGTAGGAGAGACGCACAGGGTCCACTGCTTCGGGTTGCCAGTGCATATGGGCAACAGCAGT
GTGGGGCCAGTAGATGTGGGAGAGATACACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATAGG
CAACAGCAGAGTGGGTCCGGTCGAAGTTGGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGG
TACAAATAGGCAACTGCGATGTAGCATTGGTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATA
AGGAACACAGTAAACTTGGTCATGTCACTGGGCTACCCGTCCCCT
Found at i:430777 original size:36 final size:36
Alignment explanation
Indices: 430721--431087 Score: 280
Period size: 36 Copynumber: 10.9 Consensus size: 36
430711 CACTTGTAAT
* * * *
430721 CAGTCACAGTCGTCCCCTTGTTATCGGTCACAGTCG
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
430757 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGT--
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
* ** * * * * *
430791 C-GTCCCCTTGTT--A-TCAGTCA-CAGTCGCAGTCA
1 CAGTCACAGTCTTCCACT-TGTAATCAGTCACAGTCG
*
430823 CAGTC---GTC--CC-CTTGTAATCTGTCACAGTCG
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
* ** *
430853 CGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCG
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
* * * *
430889 CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAG
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
*
430925 CAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCG
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
*
430961 CAGTTACAGTCTTCCACTTGTAATCAGT--CA----
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
* *
430991 CAGT---AGTC--CC-CTTGTTATCAGTGACAGTCG
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
* *
431021 CAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCG
1 CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
** *
431057 CAGTCTTAGTCTTCCACTTGTACTCAGTCAC
1 CAGTCACAGTCTTCCACTTGTAATCAGTCAC
431088 CGCTGTGGGG
Statistics
Matches: 261, Mismatches: 44, Indels: 52
0.73 0.12 0.15
Matches are distributed among these distances:
24 11 0.04
25 2 0.01
26 2 0.01
27 4 0.02
29 3 0.01
30 33 0.13
31 4 0.02
32 1 0.00
33 17 0.07
34 3 0.01
35 4 0.02
36 177 0.68
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.31
Consensus pattern (36 bp):
CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
Left flanking sequence: Indices 430221 -- 430720
AATGGGTCTGTTGATGCTGTGGTTGCCACGTGGGGTGGGTGGAGTGGTTGCAAATCTCAACTACG
TGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGATTGCTCTGGCTCTATGTA
GGACACGGGATAGGGTACGTGGTAGTTACAGTCACGGGGCACTTCCATCCCTTGATAGTTTTGGA
GACCGTTCTCGTACAGGTGGGACAGGTATTGGGCAAGGTGCTGGTGACCGTGCCCTTTGGACAGC
CGCAGGTACCGGGAACGCGGACAGTTTTAGTGTGCTTACAGGTGAACTTCGACGGGCACGGAATA
GTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACAGTGGGAAGCGCCGGACA
CGTCCTACAGGGCAAAGTTGCGGTGGAAGTCTTCCACTTGTACTTAGTCACAGTCTTCCCCTTGT
AATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAAT
Right flanking sequence: Indices 431088 -- 431587
CGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTTTG
GGCAGGGCGTGTAGGCAGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTG
CCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGAGAGACGCACAGGGTCCACTG
CTTCGGGTTGCCAGTGCATATGGGCAACAGCAGTGTGGGGCCAGTAGATGTGGGAGAGATACACA
GCGTCCACTGCTTCGGGTTGCCCGTACAGATAGGCAACAGCAGAGTGGGTCCGGTCGAAGTTGGA
GACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACTGCGATGTAGCATTGGT
GGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTTGGTCATGTCACTGG
GCTACCCGTCCCCTCCCTCTAATTTATATTTTTATCCCAGCCCTC
Found at i:430789 original size:24 final size:24
Alignment explanation
Indices: 430757--430816 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
430747 GTCACAGTCG
*
430757 CAGTCACAGTCTTCCACTTGTAAT
1 CAGTCACAGTCGTCCACTTGTAAT
* *
430781 CAGTCACAGTCGTCCCCTTGTTAT
1 CAGTCACAGTCGTCCACTTGTAAT
430805 CAGTCACAGTCG
1 CAGTCACAGTCG
430817 CAGTCACAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.30
Consensus pattern (24 bp):
CAGTCACAGTCGTCCACTTGTAAT
Left flanking sequence: Indices 430257 -- 430756
GGGTGGAGTGGTTGCAAATCTCAACTACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGC
AAAAGAACAGATTGCTCTGGCTCTATGTAGGACACGGGATAGGGTACGTGGTAGTTACAGTCACG
GGGCACTTCCATCCCTTGATAGTTTTGGAGACCGTTCTCGTACAGGTGGGACAGGTATTGGGCAA
GGTGCTGGTGACCGTGCCCTTTGGACAGCCGCAGGTACCGGGAACGCGGACAGTTTTAGTGTGCT
TACAGGTGAACTTCGACGGGCACGGAATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGT
GGCACGGTAACAGTGGGAAGCGCCGGACACGTCCTACAGGGCAAAGTTGCGGTGGAAGTCTTCCA
CTTGTACTTAGTCACAGTCTTCCCCTTGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCC
ACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCGGTCACAGTCG
Right flanking sequence: Indices 430817 -- 431316
CAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTC
ACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTA
ATCTGTCACAGTCGCAGTTACAGTCTTCCACTTGTAATCAGTCACAGTAGTCCCCTTGTTATCAG
TGACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTG
TACTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTAT
GACAGTGTTTGGGCAGGGCGTGTAGGCAGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACT
GCTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGAGAGACGCAC
AGGGTCCACTGCTTCGGGTTGCCAGTGCATATGGGCAACAGCAGT
Found at i:430848 original size:96 final size:96
Alignment explanation
Indices: 430721--431087 Score: 473
Period size: 96 Copynumber: 3.7 Consensus size: 96
430711 CACTTGTAAT
* * *
430721 CAGTCACAGTCGTCCCCTTGTTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTC
1 CAGTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTC
430786 ACAGTCGTCCCCTTGTTATCAGTCACAGTCG
66 ACAGTCGTCCCCTTGTTATCAGTCACAGTCG
* * **
430817 CAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTC
1 CAGTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCAC------T-TGT-
*
430882 ACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAG
58 A-A-T--CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCG
* *
430925 CAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTTACAGTCTTCCACTTGTAATCAGTC
1 CAGTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTC
* *
430990 ACAGTAGTCCCCTTGTTATCAGTGACAGTCG
66 ACAGTCGTCCCCTTGTTATCAGTCACAGTCG
* * ** *
431021 CAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTACTCAGTC
1 CAGTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTC
431086 AC
66 AC
431088 CGCTGTGGGG
Statistics
Matches: 239, Mismatches: 20, Indels: 24
0.84 0.07 0.08
Matches are distributed among these distances:
96 143 0.60
98 1 0.00
99 1 0.00
100 1 0.00
101 3 0.01
102 2 0.01
103 3 0.01
104 1 0.00
105 1 0.00
106 1 0.00
108 82 0.34
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.31
Consensus pattern (96 bp):
CAGTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTC
ACAGTCGTCCCCTTGTTATCAGTCACAGTCG
Left flanking sequence: Indices 430221 -- 430720
AATGGGTCTGTTGATGCTGTGGTTGCCACGTGGGGTGGGTGGAGTGGTTGCAAATCTCAACTACG
TGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGATTGCTCTGGCTCTATGTA
GGACACGGGATAGGGTACGTGGTAGTTACAGTCACGGGGCACTTCCATCCCTTGATAGTTTTGGA
GACCGTTCTCGTACAGGTGGGACAGGTATTGGGCAAGGTGCTGGTGACCGTGCCCTTTGGACAGC
CGCAGGTACCGGGAACGCGGACAGTTTTAGTGTGCTTACAGGTGAACTTCGACGGGCACGGAATA
GTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACAGTGGGAAGCGCCGGACA
CGTCCTACAGGGCAAAGTTGCGGTGGAAGTCTTCCACTTGTACTTAGTCACAGTCTTCCCCTTGT
AATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAAT
Right flanking sequence: Indices 431088 -- 431587
CGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTTTG
GGCAGGGCGTGTAGGCAGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTG
CCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGAGAGACGCACAGGGTCCACTG
CTTCGGGTTGCCAGTGCATATGGGCAACAGCAGTGTGGGGCCAGTAGATGTGGGAGAGATACACA
GCGTCCACTGCTTCGGGTTGCCCGTACAGATAGGCAACAGCAGAGTGGGTCCGGTCGAAGTTGGA
GACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACTGCGATGTAGCATTGGT
GGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTTGGTCATGTCACTGG
GCTACCCGTCCCCTCCCTCTAATTTATATTTTTATCCCAGCCCTC
Found at i:430873 original size:72 final size:72
Alignment explanation
Indices: 430788--431087 Score: 320
Period size: 72 Copynumber: 4.3 Consensus size: 72
430778 AATCAGTCAC
* * * *
430788 AGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCG
1 AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
*
430853 CGGTCTT
66 CAGTCTT
* * * * *
430860 AGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAG
1 AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
**
430925 CAGTCAC
66 CAGTCTT
* * * *
430932 AGTCTTCCACTTGTAATCTGTCACAGTCGCAGTTACAGTCTTCCACTTGTAATCAGT--CA----
1 AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
430991 CAG---T
66 CAGTCTT
* * * *
430995 AGTC--CC-CTTGTTATCAGTGACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCG
1 AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
431057 CAGTCTT
66 CAGTCTT
431064 AGTCTTCCACTTG-TACTCAGTCAC
1 AGTCTTCCACTTGTTA-TCAGTCAC
431088 CGCTGTGGGG
Statistics
Matches: 193, Mismatches: 22, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
60 42 0.22
61 2 0.01
62 2 0.01
63 4 0.02
66 6 0.03
69 5 0.03
70 2 0.01
71 4 0.02
72 126 0.65
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.32
Consensus pattern (72 bp):
AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
CAGTCTT
Left flanking sequence: Indices 430288 -- 430787
GGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGATTGCTCTGGCTCTATGTAGG
ACACGGGATAGGGTACGTGGTAGTTACAGTCACGGGGCACTTCCATCCCTTGATAGTTTTGGAGA
CCGTTCTCGTACAGGTGGGACAGGTATTGGGCAAGGTGCTGGTGACCGTGCCCTTTGGACAGCCG
CAGGTACCGGGAACGCGGACAGTTTTAGTGTGCTTACAGGTGAACTTCGACGGGCACGGAATAGT
TGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACAGTGGGAAGCGCCGGACACG
TCCTACAGGGCAAAGTTGCGGTGGAAGTCTTCCACTTGTACTTAGTCACAGTCTTCCCCTTGTAA
TCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTT
ATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCAC
Right flanking sequence: Indices 431088 -- 431587
CGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTTTG
GGCAGGGCGTGTAGGCAGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTG
CCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGAGAGACGCACAGGGTCCACTG
CTTCGGGTTGCCAGTGCATATGGGCAACAGCAGTGTGGGGCCAGTAGATGTGGGAGAGATACACA
GCGTCCACTGCTTCGGGTTGCCCGTACAGATAGGCAACAGCAGAGTGGGTCCGGTCGAAGTTGGA
GACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACTGCGATGTAGCATTGGT
GGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTTGGTCATGTCACTGG
GCTACCCGTCCCCTCCCTCTAATTTATATTTTTATCCCAGCCCTC
Found at i:430993 original size:24 final size:24
Alignment explanation
Indices: 430961--431020 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
430951 GTCACAGTCG
* *
430961 CAGTTACAGTCTTCCACTTGTAAT
1 CAGTCACAGTCGTCCACTTGTAAT
* * *
430985 CAGTCACAGTAGTCCCCTTGTTAT
1 CAGTCACAGTCGTCCACTTGTAAT
*
431009 CAGTGACAGTCG
1 CAGTCACAGTCG
431021 CAGTCACAGT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (24 bp):
CAGTCACAGTCGTCCACTTGTAAT
Left flanking sequence: Indices 430461 -- 430960
GACCGTGCCCTTTGGACAGCCGCAGGTACCGGGAACGCGGACAGTTTTAGTGTGCTTACAGGTGA
ACTTCGACGGGCACGGAATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTA
ACAGTGGGAAGCGCCGGACACGTCCTACAGGGCAAAGTTGCGGTGGAAGTCTTCCACTTGTACTT
AGTCACAGTCTTCCCCTTGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAAT
CAGTCACAGTCGTCCCCTTGTTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTC
ACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGT
CGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAG
TCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCG
Right flanking sequence: Indices 431021 -- 431520
CAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTACTCAGTC
ACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTT
TGGGCAGGGCGTGTAGGCAGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGT
TGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGAGAGACGCACAGGGTCCAC
TGCTTCGGGTTGCCAGTGCATATGGGCAACAGCAGTGTGGGGCCAGTAGATGTGGGAGAGATACA
CAGCGTCCACTGCTTCGGGTTGCCCGTACAGATAGGCAACAGCAGAGTGGGTCCGGTCGAAGTTG
GAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACTGCGATGTAGCATTG
GTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACA
Found at i:431002 original size:168 final size:165
Alignment explanation
Indices: 430721--431087 Score: 445
Period size: 168 Copynumber: 2.2 Consensus size: 165
430711 CACTTGTAAT
* *
430721 CAGTCACAGTCGTCCCCTTGTTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTC
1 CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCAGTC
* * * *
430786 ACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGT
66 ACAGTCG---CCTAGTTATCAGTCACAGTAGCAGTCACAGTAGTCCCCTTGTAATCAGTCACAGT
* **
430851 CGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCG
128 CGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCG
*
430889 CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTC
1 CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCAGTC
* * * *
430954 ACAGTCG-C-AGTTA-CAGTCTTCCACTTGTAATCAGTCACAGTAGTCCCCTTGTTATCAGTGAC
66 ACAGTCGCCTAGTTATCAG---T-CAC-AGT-AGCAGTCACAGTAGTCCCCTTGTAATCAGTCAC
*
431016 AGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCG
125 AGTCGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCG
** * *
431057 CAGTCTTAGTCTTCCACTTG-TACTCAGTCAC
1 CAGTCACAGTCGTCCCCTTGTTA-TCAGTCAC
431088 CGCTGTGGGG
Statistics
Matches: 173, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
162 3 0.02
163 4 0.02
164 1 0.01
165 1 0.01
166 3 0.02
167 4 0.02
168 157 0.91
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.31
Consensus pattern (165 bp):
CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCAGTC
ACAGTCGCCTAGTTATCAGTCACAGTAGCAGTCACAGTAGTCCCCTTGTAATCAGTCACAGTCGC
AGTCACAGTCTTCCACTTGTAATCTGTCACAGTCG
Left flanking sequence: Indices 430221 -- 430720
AATGGGTCTGTTGATGCTGTGGTTGCCACGTGGGGTGGGTGGAGTGGTTGCAAATCTCAACTACG
TGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGATTGCTCTGGCTCTATGTA
GGACACGGGATAGGGTACGTGGTAGTTACAGTCACGGGGCACTTCCATCCCTTGATAGTTTTGGA
GACCGTTCTCGTACAGGTGGGACAGGTATTGGGCAAGGTGCTGGTGACCGTGCCCTTTGGACAGC
CGCAGGTACCGGGAACGCGGACAGTTTTAGTGTGCTTACAGGTGAACTTCGACGGGCACGGAATA
GTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACAGTGGGAAGCGCCGGACA
CGTCCTACAGGGCAAAGTTGCGGTGGAAGTCTTCCACTTGTACTTAGTCACAGTCTTCCCCTTGT
AATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAAT
Right flanking sequence: Indices 431088 -- 431587
CGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTTTG
GGCAGGGCGTGTAGGCAGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTG
CCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGAGAGACGCACAGGGTCCACTG
CTTCGGGTTGCCAGTGCATATGGGCAACAGCAGTGTGGGGCCAGTAGATGTGGGAGAGATACACA
GCGTCCACTGCTTCGGGTTGCCCGTACAGATAGGCAACAGCAGAGTGGGTCCGGTCGAAGTTGGA
GACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACTGCGATGTAGCATTGGT
GGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTTGGTCATGTCACTGG
GCTACCCGTCCCCTCCCTCTAATTTATATTTTTATCCCAGCCCTC
Found at i:431279 original size:75 final size:75
Alignment explanation
Indices: 431173--431460 Score: 315
Period size: 75 Copynumber: 3.8 Consensus size: 75
431163 GTAGGCAGGT
* * *
431173 CCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGCAACAG
1 CCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCGGTACAAATAGGCAACAG
* *
431238 CAGGGTCGGC
66 CAGAGTGGGC
* * * * * * * * *
431248 CCGGTAGACGTAGGAGAGACGCACAGGGTCCACTGCTTCGGGTTGCCAGTGCATATGGGCAACAG
1 CCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCGGTACAAATAGGCAACAG
* *
431313 CAGTGTGGGG
66 CAGAGTGGGC
* * * * * *
431323 CCAGTAGATGTGGGAGAGATACACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATAGGCAACAG
1 CCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCGGTACAAATAGGCAACAG
*
431388 CAGAGTGGGT
66 CAGAGTGGGC
* * * * * *
431398 CCGGTCGAAGTTGGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAAC
1 CCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCGGTACAAATAGGCAAC
431461 TGCGATGTAG
Statistics
Matches: 178, Mismatches: 35, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 178 1.00
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.18
Consensus pattern (75 bp):
CCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCGGTACAAATAGGCAACAG
CAGAGTGGGC
Left flanking sequence: Indices 430673 -- 431172
TGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCC
TTGTTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTT
ATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCC
ACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACA
GTCTTCCACTTGTAATCTGTCACAGTCGCAGTTACAGTCTTCCACTTGTAATCAGTCACAGTAGT
CCCCTTGTTATCAGTGACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCT
TAGTCTTCCACTTGTACTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGA
CACTTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCAGGT
Right flanking sequence: Indices 431461 -- 431960
TGCGATGTAGCATTGGTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAA
CTTGGTCATGTCACTGGGCTACCCGTCCCCTCCCTCTAATTTATATTTTTATCCCAGCCCTCTCC
TATAATTAGTAGCCCCTTAATGACCACTCGATGGTGGCTTTGACAAGATCAACGGCCAATTAATC
GCAAGACTACGCCTGAAGGGCTAAATGGAATGTCGTTCTGTGTCGCTCTGGTGTCGTTGAGCATA
TACGAAACTTACGCTCGCCTCAGTGCCCCACCAAAAGGAATACCCGAGGATCCACCGTAAGCCCT
CACTCGTAAAGCGTAAACCCCGTACCAAACGATTGGCACCTGAAAAAGCTTTCCGATGCCGATTC
CATTTGAACACTCCCAGGCTGTCCCTTTTGCAACCTGCTCTTGCTACTGGTTCCTCTTTTTTGCC
ACTGCGGGATTTCGCGGGGTCGCCTACGAGCACCGGACTCGCCCG
Found at i:431459 original size:150 final size:150
Alignment explanation
Indices: 431176--431460 Score: 372
Period size: 150 Copynumber: 1.9 Consensus size: 150
431166 GGCAGGTCCG
* * * *
431176 GTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGCAACAGCAG
1 GTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCCGTACAAATAGGCAACAGCAG
* * * * * * * *
431241 GGTCGGCCCGGTAGACGTAGGAGAGACGCACAGGGTCCACTGCTTCGGGTTGCCAGTGCATATGG
66 AGTCGGCCCGGTAGAAGTAGGAGACACGCACAGAGTCCACTGCTTCGGGTTACCAGTACAAATAG
431306 GCAACAGCAGTGTGGGGCCA
131 GCAACAGCAGTGTGGGGCCA
* * * *
431326 GTAGATGTGGGAGAGATACACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATAGGCAACAGCAG
1 GTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCCGTACAAATAGGCAACAGCAG
* * * * * *
431391 AGTGGGTCCGGTCGAAGTTGGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAG
66 AGTCGGCCCGGTAGAAGTAGGAGACACGCACAGAGTCCACTGCTTCGGGTTACCAGTACAAATAG
431456 GCAAC
131 GCAAC
431461 TGCGATGTAG
Statistics
Matches: 113, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
150 113 1.00
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.18
Consensus pattern (150 bp):
GTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCCGTACAAATAGGCAACAGCAG
AGTCGGCCCGGTAGAAGTAGGAGACACGCACAGAGTCCACTGCTTCGGGTTACCAGTACAAATAG
GCAACAGCAGTGTGGGGCCA
Left flanking sequence: Indices 430676 -- 431175
AATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTG
TTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATC
AGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACT
TGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTC
TTCCACTTGTAATCTGTCACAGTCGCAGTTACAGTCTTCCACTTGTAATCAGTCACAGTAGTCCC
CTTGTTATCAGTGACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAG
TCTTCCACTTGTACTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACAC
TTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCAGGTCCG
Right flanking sequence: Indices 431461 -- 431960
TGCGATGTAGCATTGGTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAA
CTTGGTCATGTCACTGGGCTACCCGTCCCCTCCCTCTAATTTATATTTTTATCCCAGCCCTCTCC
TATAATTAGTAGCCCCTTAATGACCACTCGATGGTGGCTTTGACAAGATCAACGGCCAATTAATC
GCAAGACTACGCCTGAAGGGCTAAATGGAATGTCGTTCTGTGTCGCTCTGGTGTCGTTGAGCATA
TACGAAACTTACGCTCGCCTCAGTGCCCCACCAAAAGGAATACCCGAGGATCCACCGTAAGCCCT
CACTCGTAAAGCGTAAACCCCGTACCAAACGATTGGCACCTGAAAAAGCTTTCCGATGCCGATTC
CATTTGAACACTCCCAGGCTGTCCCTTTTGCAACCTGCTCTTGCTACTGGTTCCTCTTTTTTGCC
ACTGCGGGATTTCGCGGGGTCGCCTACGAGCACCGGACTCGCCCG
Found at i:432868 original size:23 final size:23
Alignment explanation
Indices: 432827--432885 Score: 91
Period size: 23 Copynumber: 2.5 Consensus size: 23
432817 TCCTAGGTGA
*
432827 CCTAGCTCCAGCCACCTGGCTCTT
1 CCTAGCT-CAGCCAACTGGCTCTT
432851 CCTAGCTCAGCCAACTGGCTCTT
1 CCTAGCTCAGCCAACTGGCTCTT
*
432874 CCTAGCCCAGCC
1 CCTAGCTCAGCC
432886 GGCTTTTCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
23 26 0.79
24 7 0.21
ACGTcount: A:0.15, C:0.46, G:0.17, T:0.22
Consensus pattern (23 bp):
CCTAGCTCAGCCAACTGGCTCTT
Left flanking sequence: Indices 432327 -- 432826
CTGAACATGGTGGGTTGGTTTATAATGGTCCCGCTATGGTTGGGCGAAAAATTTGAGACCGGGAG
TGTGCAGGATGCGGTTTGCAGCAAGGCGAGCAAGGGCAGGGTGTGGGGGCGAGAAGGTGGGTGAG
AGGGTGGTTTGGGCTGGTGGGGTGGATACTACGTGGTGTGCTAGGTGTTACGGTGGGCTGGTGTT
TGTGTTTTGATTGTGGATCAGGGTGGGCTGGGGGAGCATGCTTTCTAAGCCCGAAAAACGAGAGG
TACTTTGTATGAGCTTCACTTGAGGTACTATGGCTTTAAGACTCCTTCGTGGGATTCCTGGTTTG
CTCTAGCTACCTGGCTCTTTACTTGTTTCTTCAGTCTAGTCAATTAGATCTTATAGATCGTATAG
CGTTATACTCACCTCGTAAACTAGATATTCAACTTTTTCTCACTACCTAGTCAACTTGATCGTTT
ATAGAGTTTTCTCACTACTCGAGAGACTGACACTCTCCTAGGTGA
Right flanking sequence: Indices 432886 -- 433385
GGCTTTTCTAGCTCAAGTACATAACTTCAGTCCCCTCTTCTTAACTTTGTACACTACACCACTTC
CAGTTGAGCCTTACACCCAAACACTAACTGCTTCAATTGTCTCTTACTATACTCTACCCCTAGTT
CACCATCAGCCGCCAGTTGATCGCCGTGCGCTTCTTGCCCAGCTTCTGGCTCGCAGCAAACCCGT
TGGCCGCCGACGACTTGTCGGACGAGAGCCCCAGGATCCCCGACAGCGCCAGCGACGTGGTGGAC
TGCGTCCGCACCAACCGCGCGCCCGGGATCGACGAGCTCGGAATCAGCAGCGCCGGCAACGACGG
CACCGACCCCGTGGTGGTGTTCCCCGTCAGCGCCGCCAGCAACGAGCGCTTGTCGTTCACCAGCA
GCGGCACCGGCGTGGGCTGGAAGTGCGGGGTGGCGTGGTTGTAGGCCACGTTCTCGTAGTCGGTG
TTGATCTTCAACGCCTCGATGTCCTCCTTGAAGTTCTTGCGGTAC
Found at i:439780 original size:15 final size:15
Alignment explanation
Indices: 439756--439868 Score: 121
Period size: 15 Copynumber: 7.7 Consensus size: 15
439746 ACTTGGCGTG
439756 AACTTGGCACCGGTT
1 AACTTGGCACCGGTT
*
439771 AACTTAGCACCGGTT
1 AACTTGGCACCGGTT
439786 AACTTGGCACCGGTT
1 AACTTGGCACCGGTT
439801 AACTTGGCACCGGTT
1 AACTTGGCACCGGTT
*
439816 GAAC-T-GCACCAGTT
1 -AACTTGGCACCGGTT
*
439830 GAAC-T-GCATCGGTT
1 -AACTTGGCACCGGTT
439844 GAAC-T-GCACCGGTT
1 -AACTTGGCACCGGTT
439858 GAACTTGGCAC
1 -AACTTGGCAC
439869 TGATTGAATT
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
14 37 0.42
15 45 0.51
16 7 0.08
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.25
Consensus pattern (15 bp):
AACTTGGCACCGGTT
Left flanking sequence: Indices 439256 -- 439755
CCTGGCGACAGCTGAGCGGGCGATGGCGTGGTTCACTGCGTCGGGCCGTGGCAGTCAGCGGGCGG
CGTGGAACGCAGTCAGCAGGTGTCTGCTGACGGCCCGTAGCGATGTTGCATGTCGGGTGTGCGGA
CACAAAACGCGAGTAATGACAAAGGATCTGGGTGATGGGGGGAAGGGTAGCCGAGAGCGGGCGAT
GCTGCGTAGGCGACGGCGATGTTCCATGCGTGGTTATTTTAGGCGTGGGGGATGTAGGTTGGTGG
GAGTGTGTGAGGTGGTGTTATGAGTTGGTGGTAGTTAGTGTATGGAGTTGGTGATACGAGTTGTC
TGTATCGGGTATAATTGTGACGAGTCACAATGGAGAAGAAACGTGTGTCGGGGTGATTTGGGTTT
GTGGAGACCGCGGTGCCTCGTTGGATCGCTGAAGTAGCACTTCTTGAAACAGCTTGAAATTAGGC
AGTGGCACTGCTTGAAAGTACTGATTGACTTGGAAACTTGGCGTG
Right flanking sequence: Indices 439869 -- 440368
TGATTGAATTCTGTAGTCGCTGAAACTAGCTGAAATAAGCAGTAACCGCAACAGCTTAGTGTAGT
ACAAGGTTTTGTAAGACAGACATTCTATGCCTCTAGAGAGCTATCACTGTGAGCACAATTGACAG
GTCCAGTATCTCCACCATCTCAAACGTCGGTCATTAGAGACAATCAACCAGAGTAACCCCCCAAC
TACAACCCATCCTTAACCCCATTACTATTATAATACACTCTATACATTACGCGAGCCAGTGGGCA
AACCGCGACGCCACGTCCTTGACGCTGCGCCGGTTGTACAGCCGGCCCTTGTCCCACAAATACCG
GTCCATCTCGGTGCGCCCGGTGTCAAAGTCGATCGTCTCGAGCGTGGGGATCCGCGACCGACGAA
TGATCTTGTAGCCAAAGTAGAGCACGAAAAACACAATGATCGTGCCGTACGAGCTGAAAAAGAAC
CAGGTGTTCCACTCGCCACCTAGAAACACCACGTAGCCCATCCCC
Found at i:439792 original size:30 final size:30
Alignment explanation
Indices: 439762--439868 Score: 134
Period size: 30 Copynumber: 3.7 Consensus size: 30
439752 CGTGAACTTG
*
439762 GCACCGGTT-AACTTAGCACCGGTT-AACTT
1 GCACCGGTTGAACTTGGCACCGGTTGAAC-T
439791 GGCACCGGTT-AACTTGGCACCGGTTGAACT
1 -GCACCGGTTGAACTTGGCACCGGTTGAACT
* *
439821 GCACCAGTTGAAC-T-GCATCGGTTGAACT
1 GCACCGGTTGAACTTGGCACCGGTTGAACT
439849 GCACCGGTTGAACTTGGCAC
1 GCACCGGTTGAACTTGGCAC
439869 TGATTGAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
28 25 0.37
29 10 0.15
30 30 0.44
31 3 0.04
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.24
Consensus pattern (30 bp):
GCACCGGTTGAACTTGGCACCGGTTGAACT
Left flanking sequence: Indices 439262 -- 439761
GACAGCTGAGCGGGCGATGGCGTGGTTCACTGCGTCGGGCCGTGGCAGTCAGCGGGCGGCGTGGA
ACGCAGTCAGCAGGTGTCTGCTGACGGCCCGTAGCGATGTTGCATGTCGGGTGTGCGGACACAAA
ACGCGAGTAATGACAAAGGATCTGGGTGATGGGGGGAAGGGTAGCCGAGAGCGGGCGATGCTGCG
TAGGCGACGGCGATGTTCCATGCGTGGTTATTTTAGGCGTGGGGGATGTAGGTTGGTGGGAGTGT
GTGAGGTGGTGTTATGAGTTGGTGGTAGTTAGTGTATGGAGTTGGTGATACGAGTTGTCTGTATC
GGGTATAATTGTGACGAGTCACAATGGAGAAGAAACGTGTGTCGGGGTGATTTGGGTTTGTGGAG
ACCGCGGTGCCTCGTTGGATCGCTGAAGTAGCACTTCTTGAAACAGCTTGAAATTAGGCAGTGGC
ACTGCTTGAAAGTACTGATTGACTTGGAAACTTGGCGTGAACTTG
Right flanking sequence: Indices 439869 -- 440368
TGATTGAATTCTGTAGTCGCTGAAACTAGCTGAAATAAGCAGTAACCGCAACAGCTTAGTGTAGT
ACAAGGTTTTGTAAGACAGACATTCTATGCCTCTAGAGAGCTATCACTGTGAGCACAATTGACAG
GTCCAGTATCTCCACCATCTCAAACGTCGGTCATTAGAGACAATCAACCAGAGTAACCCCCCAAC
TACAACCCATCCTTAACCCCATTACTATTATAATACACTCTATACATTACGCGAGCCAGTGGGCA
AACCGCGACGCCACGTCCTTGACGCTGCGCCGGTTGTACAGCCGGCCCTTGTCCCACAAATACCG
GTCCATCTCGGTGCGCCCGGTGTCAAAGTCGATCGTCTCGAGCGTGGGGATCCGCGACCGACGAA
TGATCTTGTAGCCAAAGTAGAGCACGAAAAACACAATGATCGTGCCGTACGAGCTGAAAAAGAAC
CAGGTGTTCCACTCGCCACCTAGAAACACCACGTAGCCCATCCCC
Found at i:442987 original size:9 final size:9
Alignment explanation
Indices: 442952--442985 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
442942 TTGTTGGTCT
442952 CGTTTGCCA
1 CGTTTGCCA
*
442961 CGTTTGCCC
1 CGTTTGCCA
*
442970 CGTTTGCTA
1 CGTTTGCCA
442979 CGTTTGC
1 CGTTTGC
442986 TAGGGATTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.06, C:0.32, G:0.24, T:0.38
Consensus pattern (9 bp):
CGTTTGCCA
Left flanking sequence: Indices 442452 -- 442951
GTGCGAATGCGCGCTATTAGATCGAAACGGAAGGAGGGGTGGGAAGGGGGTCGGGTACGAGGTTG
TGGGAGAGGGTGGGGCGGTGGTTGGGGGTTTACTGGGTGGTGTGGGGTGGAGGGTGGGTGATTTG
GGTGTGGGTTTTGGGTTTGGTGGTGGTTCAGCCGTTCCGGGTGACCCCTCACGGATAAGGTTTAG
TGGGTGAGGGGACGATGGAAGAAGGTGAAAAAAGTAGTGGGTGGGTGAAGGGTGGGGTTTTTGAA
GGGTAGGGTGTTAAAGGGAGTGGGTGTAAGAGGGTAGAAGGATTATTTGGGCGTGTTGGGGGTGG
TTTGGTAAAGAATGGAGTCCCTTTGGTACCACTAGGTCCCTATTGTTGTGCCAAGGTCCCTGTGA
CGTCATGTTGGGTAACAATAGATCGAGGCAGTCGTATAGTAACAAGAGAACGGTTGTTTCACGGC
AACAATACAACGACAGTGGTGGCCTGCTGTATTGTTTGTTGGTCT
Right flanking sequence: Indices 442986 -- 443485
TAGGGATTACTACGGATACACCGTTCACTGTTCTACCACGCTATTGTTCGTCACATATATTCTTG
GCTAAATATCACACAACCTGAAGCGTGATCTGCGAGCACCCGCCATTGTCGTACCAGCCGACACT
CGAGCCACACTTCCAAAACACCGTCTGGTCCGACAGCGGGCCCTGGCGGAACACCCCATCGGTAA
TGCCCCAGTCGCGGGTCGCCTGGGCCTGGTCGTCGGTAAGTCCAATGTAGGGCACCTGCTTAGTA
AGATACTGGCCGTCCACCCGCACAAACCCCTCGGGTTCCTGTAGTTCAAACTGCGCCGGCACCGC
GGGGTCGCCGATGTTGATGGCCAACTGGGTGTTGGAAACAGTGACGGGCAAACCCACCCCGTTCT
CAACGGCAAAGAGGGTAAACGCAGCAATAGGGGACAAGAGAAGAGAAATAAAGTACATGGTTTCT
GCTACATTTTGGCGCTTTTTATAATTTTGCTGGATTTCTGCAAAT
Found at i:444851 original size:21 final size:21
Alignment explanation
Indices: 444800--444851 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
444790 ACCCTACCCA
*
444800 CTCATCC-CACACCACCTCTC
1 CTCATCCACACACCACCTCAC
* *
444820 CACCACCCCACACACCACCTCAC
1 C-TCA-TCCACACACCACCTCAC
444843 CTCATCCAC
1 CTCATCCAC
444852 CTCAAATTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 5
0.71 0.15 0.15
Matches are distributed among these distances:
20 1 0.04
21 6 0.25
22 4 0.17
23 13 0.54
ACGTcount: A:0.25, C:0.62, G:0.00, T:0.13
Consensus pattern (21 bp):
CTCATCCACACACCACCTCAC
Left flanking sequence: Indices 444300 -- 444799
TTGAGTTTACAATAGGCTGCTATATAGACGGCCGGTGAAAATTTGGCGTTGAGGCGACAGGCGAC
CTATATATACCCCAACACCCTTACGGAGAGTCATCGTTGACACAATATACAACGGCTTCTATCCG
GTCTTTGAGCGACATCGACCGCAGCGACCCGAACGAAACTGCCGTTCCATATCAGCATAATCGTG
GTTCACTTCAACCCTACCCCGAATCCTCGCCCGCCCTCCTGTAGCCCTAGCCCAGCCCAACCCTA
CGCCTCAACAAACCTCCACTGCTGCATCTATCCTCTTCCGTACGCTTCTCACTATTCCGCTGCCT
CAACCGCCGTTGCGAGCCCGCGGCGTATCGTAAAACCCGCACCAGCGATGTCCGTTGAGATGGCG
CTACTCCCCGAACACGTCCCGGGAAAACCACCGTGAAAGCTTTGCTCGTCACTCCAATCACTAAA
GCTCCTCTCTACACTCTTCCACACCTCTACACACCACCCTACCCA
Right flanking sequence: Indices 444852 -- 445351
CTCAAATTTTTCATATTTTCTATGGTTGAGAGCGCTTCCATCCATCGCAAATTGCTGGCTGCAAA
CCAGGCACCTAAAGGCCCACCGTGTTCGACGCACACGCAGGCCACCTCTGCAAACACCGTCCCAT
TGGCCCAGGCCCCCCAAAACGTCATTAAGCGCTGGCTTCGCGCCCACCCAACGCACCTCCCGCTT
CTGTCGCCTTCCATTCACCGGTATACGCGTCCGGCATGCGCCTTGCTGCACGCGCCGCACAGCTC
ATCGCCTCCCCCCCACGGCCCGAGAACTCTATATAACTTCGGTTGCCAGCCACTTTTCACTAACC
AACCATGTCATACAAATCCCACAACCACAGATACGCATCCAAGCAGCATCGCAGTGGGAGACACA
GCCACGGCCACGGGCACCACCACCGCCTGGGCCGCCATGGCCATCGCGAGGACCGTCGTCCTCAC
GGCCACAAGCGCCACTACCGCAAGTACTACCACCAGCAGCCCAGC
Found at i:445482 original size:15 final size:15
Alignment explanation
Indices: 445457--445492 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
445447 CGAGATGGAC
445457 AGCTCGCTGGAGCTGG
1 AGCT-GCTGGAGCTGG
445473 AGCTGCTGGAGCTGG
1 AGCTGCTGGAGCTGG
445488 AGCTG
1 AGCTG
445493 GAGACCGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.14, C:0.22, G:0.44, T:0.19
Consensus pattern (15 bp):
AGCTGCTGGAGCTGG
Left flanking sequence: Indices 444957 -- 445456
GCCACCTCTGCAAACACCGTCCCATTGGCCCAGGCCCCCCAAAACGTCATTAAGCGCTGGCTTCG
CGCCCACCCAACGCACCTCCCGCTTCTGTCGCCTTCCATTCACCGGTATACGCGTCCGGCATGCG
CCTTGCTGCACGCGCCGCACAGCTCATCGCCTCCCCCCCACGGCCCGAGAACTCTATATAACTTC
GGTTGCCAGCCACTTTTCACTAACCAACCATGTCATACAAATCCCACAACCACAGATACGCATCC
AAGCAGCATCGCAGTGGGAGACACAGCCACGGCCACGGGCACCACCACCGCCTGGGCCGCCATGG
CCATCGCGAGGACCGTCGTCCTCACGGCCACAAGCGCCACTACCGCAAGTACTACCACCAGCAGC
CCAGCGACATGGTGTACGTGGAGGAGCCTACCGACAACCTGAGCGAGGAGCTCTCTGAGGAGGAG
GAGGAGTCCTACGACTTTGCCTTGGAGTCCAACTCCGAGATGGAC
Right flanking sequence: Indices 445493 -- 445992
GAGACCGACTCCGACTTTGACGACGCCCGTGACATTATGTTCTACGACAACGTCGAGTCTGACGG
CGTTTCCGACCTTGACGACGACGAGTTGCTCGACCTCCTTGAGGAGGAGGGCATCGTCGCCAACC
TCAACGACGAGTTGGTGGCCTACTACGACTCGGAGCTGGAGCTGGAGTTGGAGCTCGACTCCGAC
GACGTCGAGGAGATCTTGGACATCATCGACTTGAACGACCAGTTGCAGGCGCAGGCGATGGCCGA
CCTCGACTCCGACCTCGAGTACTCCTCCGACGAGGAGACTTTGGACGACCAGTTGAAGTTGGAGG
CGGTGCGCCAGTTCTTTGAGGACGAGATGGTGTCGCTGGACGAGATCTCCGACTCCGAGACCGAG
TTTGACGCCGGCAACCCCGACCTGTACCAGTTCATTTGCGACAACTGTGAGGACGAGGAGGACGA
GCTGACTGACGACGAGGGGCTCACCATCTACCGCCACGTTTTCGA
Found at i:446336 original size:15 final size:15
Alignment explanation
Indices: 446333--446394 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
446323 CGACTCTGAG
* *
446333 GACTCTGAGGACTCT
1 GACTCCGAGGACTCC
*
446348 GATTCCGAGGACTCTGAC
1 GACTCCGAGGACTC---C
* *
446366 GACTCTGACGACTCC
1 GACTCCGAGGACTCC
446381 GACTCCGAGGACTC
1 GACTCCGAGGACTC
446395 TGACGATTCT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
15 25 0.69
18 11 0.31
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (15 bp):
GACTCCGAGGACTCC
Left flanking sequence: Indices 445833 -- 446332
TTGAGGACGAGATGGTGTCGCTGGACGAGATCTCCGACTCCGAGACCGAGTTTGACGCCGGCAAC
CCCGACCTGTACCAGTTCATTTGCGACAACTGTGAGGACGAGGAGGACGAGCTGACTGACGACGA
GGGGCTCACCATCTACCGCCACGTTTTCGACCTCCCCGAGGACGAGGACGACCTGACCGACGAGG
AGTTGATGGCCGAGGACTCTGACGACGAGCCCGACATCGTCGACTTGACCTCTGACTTGATCGAC
TCCAAGGACATCGAGGTGGAGGAGGGTGACGACCACTACAAGGTGACCATCCGCTTGCCCTCGAT
TGACCAGGACGAGCTCAAGATCGACTTCAACAAGGCCGAGAACGAGTTGGTGGTGAACGGCAAGT
TCGACTTCACCATCGACGACGGCGAGGACGACGAGATCGAGGCCGTGGTGACTTTGGAGGAGCAG
GACGACACCACTCCCGACTCGCTGGACTCCGACTCCGACTCTGAG
Right flanking sequence: Indices 446395 -- 446894
TGACGATTCTGAGGACTCTGAGGACTCCGACTCCGACTCTGAATCCGACCTGCTGGACTCGTCCG
ACTCCGAGGCGGAGGCTGAGGAGGAGCAGCGGGCCATCATTGAGGCTGCCGAGGAGGCTGCCGAG
GCTCTCGAGGACGACGACGACGAAGACTTTGTTGACGACGACGCTGCTGACGTCACCTGCGACAT
TGACGACGACGAGCTCTTGGAGGACGCCCAGTACCTCACCAAGGACTTCCAGGGCCAGGAGATCG
GGTTCGAGAAGCACTTCCAGTTCGACAAGTTGGTTGCCTGGGAGCTGATCATCGCCAAGTTCAAC
GACGACGGCGAGCTCGAGATCACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTA
CGTGCCTATTGCCATCCAGGCGCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTG
ACATGGACGAGGAGTAAACCTGCACCCACTTCACTTGCACTTAAT
Found at i:446338 original size:9 final size:9
Alignment explanation
Indices: 446324--446421 Score: 82
Period size: 9 Copynumber: 11.6 Consensus size: 9
446314 CTCCGACTCC
446324 GACTCTGAG
1 GACTCTGAG
446333 GACTCTGAG
1 GACTCTGAG
446342 GACTCT---
1 GACTCTGAG
* *
446348 GATTCCGAG
1 GACTCTGAG
*
446357 GACTCTGAC
1 GACTCTGAG
*
446366 GACTCTGAC
1 GACTCTGAG
*
446375 GACTC---C
1 GACTCTGAG
*
446381 GACTCCGAG
1 GACTCTGAG
*
446390 GACTCTGAC
1 GACTCTGAG
*
446399 GATTCTGAG
1 GACTCTGAG
446408 GACTCTGAG
1 GACTCTGAG
446417 GACTC
1 GACTC
446422 CGACTCCGAC
Statistics
Matches: 72, Mismatches: 11, Indels: 12
0.76 0.12 0.13
Matches are distributed among these distances:
6 10 0.14
9 62 0.86
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (9 bp):
GACTCTGAG
Left flanking sequence: Indices 445824 -- 446323
GCCAGTTCTTTGAGGACGAGATGGTGTCGCTGGACGAGATCTCCGACTCCGAGACCGAGTTTGAC
GCCGGCAACCCCGACCTGTACCAGTTCATTTGCGACAACTGTGAGGACGAGGAGGACGAGCTGAC
TGACGACGAGGGGCTCACCATCTACCGCCACGTTTTCGACCTCCCCGAGGACGAGGACGACCTGA
CCGACGAGGAGTTGATGGCCGAGGACTCTGACGACGAGCCCGACATCGTCGACTTGACCTCTGAC
TTGATCGACTCCAAGGACATCGAGGTGGAGGAGGGTGACGACCACTACAAGGTGACCATCCGCTT
GCCCTCGATTGACCAGGACGAGCTCAAGATCGACTTCAACAAGGCCGAGAACGAGTTGGTGGTGA
ACGGCAAGTTCGACTTCACCATCGACGACGGCGAGGACGACGAGATCGAGGCCGTGGTGACTTTG
GAGGAGCAGGACGACACCACTCCCGACTCGCTGGACTCCGACTCC
Right flanking sequence: Indices 446422 -- 446921
CGACTCCGACTCTGAATCCGACCTGCTGGACTCGTCCGACTCCGAGGCGGAGGCTGAGGAGGAGC
AGCGGGCCATCATTGAGGCTGCCGAGGAGGCTGCCGAGGCTCTCGAGGACGACGACGACGAAGAC
TTTGTTGACGACGACGCTGCTGACGTCACCTGCGACATTGACGACGACGAGCTCTTGGAGGACGC
CCAGTACCTCACCAAGGACTTCCAGGGCCAGGAGATCGGGTTCGAGAAGCACTTCCAGTTCGACA
AGTTGGTTGCCTGGGAGCTGATCATCGCCAAGTTCAACGACGACGGCGAGCTCGAGATCACCGTC
CCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGCGCTGTC
TCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCTGCACCC
ACTTCACTTGCACTTAATGATAGAACGATATAATAATGTACTTTG
Found at i:446370 original size:33 final size:33
Alignment explanation
Indices: 446324--446415 Score: 139
Period size: 33 Copynumber: 2.8 Consensus size: 33
446314 CTCCGACTCC
* *
446324 GACTCTGAGGACTCTGAGGACTCTGATTCCGAG
1 GACTCTGACGACTCTGAGGACTCTGACTCCGAG
* *
446357 GACTCTGACGACTCTGACGACTCCGACTCCGAG
1 GACTCTGACGACTCTGAGGACTCTGACTCCGAG
*
446390 GACTCTGACGATTCTGAGGACTCTGA
1 GACTCTGACGACTCTGAGGACTCTGA
446416 GGACTCCGAC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (33 bp):
GACTCTGACGACTCTGAGGACTCTGACTCCGAG
Left flanking sequence: Indices 445824 -- 446323
GCCAGTTCTTTGAGGACGAGATGGTGTCGCTGGACGAGATCTCCGACTCCGAGACCGAGTTTGAC
GCCGGCAACCCCGACCTGTACCAGTTCATTTGCGACAACTGTGAGGACGAGGAGGACGAGCTGAC
TGACGACGAGGGGCTCACCATCTACCGCCACGTTTTCGACCTCCCCGAGGACGAGGACGACCTGA
CCGACGAGGAGTTGATGGCCGAGGACTCTGACGACGAGCCCGACATCGTCGACTTGACCTCTGAC
TTGATCGACTCCAAGGACATCGAGGTGGAGGAGGGTGACGACCACTACAAGGTGACCATCCGCTT
GCCCTCGATTGACCAGGACGAGCTCAAGATCGACTTCAACAAGGCCGAGAACGAGTTGGTGGTGA
ACGGCAAGTTCGACTTCACCATCGACGACGGCGAGGACGACGAGATCGAGGCCGTGGTGACTTTG
GAGGAGCAGGACGACACCACTCCCGACTCGCTGGACTCCGACTCC
Right flanking sequence: Indices 446416 -- 446915
GGACTCCGACTCCGACTCTGAATCCGACCTGCTGGACTCGTCCGACTCCGAGGCGGAGGCTGAGG
AGGAGCAGCGGGCCATCATTGAGGCTGCCGAGGAGGCTGCCGAGGCTCTCGAGGACGACGACGAC
GAAGACTTTGTTGACGACGACGCTGCTGACGTCACCTGCGACATTGACGACGACGAGCTCTTGGA
GGACGCCCAGTACCTCACCAAGGACTTCCAGGGCCAGGAGATCGGGTTCGAGAAGCACTTCCAGT
TCGACAAGTTGGTTGCCTGGGAGCTGATCATCGCCAAGTTCAACGACGACGGCGAGCTCGAGATC
ACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGC
GCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCT
GCACCCACTTCACTTGCACTTAATGATAGAACGATATAATAATGT
Found at i:446518 original size:12 final size:12
Alignment explanation
Indices: 446501--446525 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
446491 GGCCATCATT
446501 GAGGCTGCCGAG
1 GAGGCTGCCGAG
446513 GAGGCTGCCGAG
1 GAGGCTGCCGAG
446525 G
1 G
446526 CTCTCGAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.52, T:0.08
Consensus pattern (12 bp):
GAGGCTGCCGAG
Left flanking sequence: Indices 446001 -- 446500
AGGACGAGGACGACCTGACCGACGAGGAGTTGATGGCCGAGGACTCTGACGACGAGCCCGACATC
GTCGACTTGACCTCTGACTTGATCGACTCCAAGGACATCGAGGTGGAGGAGGGTGACGACCACTA
CAAGGTGACCATCCGCTTGCCCTCGATTGACCAGGACGAGCTCAAGATCGACTTCAACAAGGCCG
AGAACGAGTTGGTGGTGAACGGCAAGTTCGACTTCACCATCGACGACGGCGAGGACGACGAGATC
GAGGCCGTGGTGACTTTGGAGGAGCAGGACGACACCACTCCCGACTCGCTGGACTCCGACTCCGA
CTCTGAGGACTCTGAGGACTCTGATTCCGAGGACTCTGACGACTCTGACGACTCCGACTCCGAGG
ACTCTGACGATTCTGAGGACTCTGAGGACTCCGACTCCGACTCTGAATCCGACCTGCTGGACTCG
TCCGACTCCGAGGCGGAGGCTGAGGAGGAGCAGCGGGCCATCATT
Right flanking sequence: Indices 446526 -- 447025
CTCTCGAGGACGACGACGACGAAGACTTTGTTGACGACGACGCTGCTGACGTCACCTGCGACATT
GACGACGACGAGCTCTTGGAGGACGCCCAGTACCTCACCAAGGACTTCCAGGGCCAGGAGATCGG
GTTCGAGAAGCACTTCCAGTTCGACAAGTTGGTTGCCTGGGAGCTGATCATCGCCAAGTTCAACG
ACGACGGCGAGCTCGAGATCACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTAC
GTGCCTATTGCCATCCAGGCGCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGA
CATGGACGAGGAGTAAACCTGCACCCACTTCACTTGCACTTAATGATAGAACGATATAATAATGT
ACTTTGCTTTTTGGAAGGTTACGTGCAACGGCGTATGCAGCGACAGTAAGTGTTTCGAGGGACGA
CTAGTGTTCGACCCCTTACATGACGCTAGATTTATTGATTTGTTT
Found at i:447040 original size:19 final size:20
Alignment explanation
Indices: 447009--447057 Score: 82
Period size: 19 Copynumber: 2.5 Consensus size: 20
446999 CATGACGCTA
447009 GATTTATTGATTTGTTTGTT
1 GATTTATTGATTTGTTTGTT
447029 GATTTA-TGATTTGTTTGTT
1 GATTTATTGATTTGTTTGTT
*
447048 GATATATTGA
1 GATTTATTGA
447058 AGATTTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.59
Consensus pattern (20 bp):
GATTTATTGATTTGTTTGTT
Left flanking sequence: Indices 446509 -- 447008
CGAGGAGGCTGCCGAGGCTCTCGAGGACGACGACGACGAAGACTTTGTTGACGACGACGCTGCTG
ACGTCACCTGCGACATTGACGACGACGAGCTCTTGGAGGACGCCCAGTACCTCACCAAGGACTTC
CAGGGCCAGGAGATCGGGTTCGAGAAGCACTTCCAGTTCGACAAGTTGGTTGCCTGGGAGCTGAT
CATCGCCAAGTTCAACGACGACGGCGAGCTCGAGATCACCGTCCCCCACACCGGGGTTGACTACC
TCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGCGCTGTCTCCCGTGCTCATTGCCGACGTC
GAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCTGCACCCACTTCACTTGCACTTAATGATA
GAACGATATAATAATGTACTTTGCTTTTTGGAAGGTTACGTGCAACGGCGTATGCAGCGACAGTA
AGTGTTTCGAGGGACGACTAGTGTTCGACCCCTTACATGACGCTA
Right flanking sequence: Indices 447058 -- 447557
AGATTTGTTTACTGATTGATTTGATTACATACTTATTATTATTACACAATGCGATTTGCAGCCAT
TAGTTACAGAAGGAGATGGGTATTGTGCCAAAACACTACAATGATACTTGATACGAAGCTATGAG
GTCTCTGCCTATGAACTCTATCCATAGACACCTTTATCCTGCTTTCAATCTCTCGTCATTCCCTT
CCCCGCCCCATCCCTTCCCCCACCATTCCCTTCCTCTCGTCCTCCAAAAATTCCCTTGCTCACCA
AAAACCCCATGACCTCCATCAACACCAGACAGGTTTACGCCGCCTTGGGCGCGGCGCTTGGGCGC
AAACTCAACAACAACGACCCCTCGATGGTCGAGACCGTGAAGGTAATCGATTTGGACCAGCCAAT
CACCACCTTGGCCCTCTTGCGGGCCCACTTGTTGAGGATTGTACTTGCAGCGGTGACCCCCGTGG
TACTCGCGTGCCACTGGGTGGGCGTCAGCTTGGGCCACGGGTGGT
Found at i:447268 original size:16 final size:16
Alignment explanation
Indices: 447244--447286 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
447234 AATCTCTCGT
*
447244 CATTCCCTTCCCCGCCC
1 CATTCCCTTCCCC-CAC
447261 CA-TCCCTTCCCCCAC
1 CATTCCCTTCCCCCAC
447276 CATTCCCTTCC
1 CATTCCCTTCC
447287 TCTCGTCCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 4 0.17
16 18 0.75
17 2 0.08
ACGTcount: A:0.09, C:0.63, G:0.02, T:0.26
Consensus pattern (16 bp):
CATTCCCTTCCCCCAC
Left flanking sequence: Indices 446744 -- 447243
GTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGCGCT
GTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCTGCA
CCCACTTCACTTGCACTTAATGATAGAACGATATAATAATGTACTTTGCTTTTTGGAAGGTTACG
TGCAACGGCGTATGCAGCGACAGTAAGTGTTTCGAGGGACGACTAGTGTTCGACCCCTTACATGA
CGCTAGATTTATTGATTTGTTTGTTGATTTATGATTTGTTTGTTGATATATTGAAGATTTGTTTA
CTGATTGATTTGATTACATACTTATTATTATTACACAATGCGATTTGCAGCCATTAGTTACAGAA
GGAGATGGGTATTGTGCCAAAACACTACAATGATACTTGATACGAAGCTATGAGGTCTCTGCCTA
TGAACTCTATCCATAGACACCTTTATCCTGCTTTCAATCTCTCGT
Right flanking sequence: Indices 447287 -- 447786
TCTCGTCCTCCAAAAATTCCCTTGCTCACCAAAAACCCCATGACCTCCATCAACACCAGACAGGT
TTACGCCGCCTTGGGCGCGGCGCTTGGGCGCAAACTCAACAACAACGACCCCTCGATGGTCGAGA
CCGTGAAGGTAATCGATTTGGACCAGCCAATCACCACCTTGGCCCTCTTGCGGGCCCACTTGTTG
AGGATTGTACTTGCAGCGGTGACCCCCGTGGTACTCGCGTGCCACTGGGTGGGCGTCAGCTTGGG
CCACGGGTGGTTCCTCTGCCAGATCTTCTGCTACGTGGTTCGCCAGCAGGCGGACTTGGCGCGCC
AACGGCGGGTTAGCGCCTGGTATGGCGGGTGGTGTCAGCTCAGCGCCCAGGCGCTGGCGGTGCCT
ACTGCGCTCAGAGCCATGTGTGTGGTGGAGCCCCACGGGTTGCGCCACTACCAGCTCTCGTTGCC
AATCACCAATGTCTCTAGCTACGCCTACGTGGGGACAATTGCGCC
Found at i:461472 original size:26 final size:26
Alignment explanation
Indices: 461443--461492 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
461433 AGTGACGGGT
*
461443 TGAAGTAGTGGGGTGAAGTGGTGGGA
1 TGAAGTAGTGGGGTAAAGTGGTGGGA
*
461469 TGAAGTAGTGGGTTAAAGTGGTGG
1 TGAAGTAGTGGGGTAAAGTGGTGG
461493 CCTGAAGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.50, T:0.26
Consensus pattern (26 bp):
TGAAGTAGTGGGGTAAAGTGGTGGGA
Left flanking sequence: Indices 460943 -- 461442
GCCAACCGCCCACAGATCTCCCCGTGCAGCCAGCCGCACGGCCATCTCCGGCAACCCGACCACCC
ACGGGGGCACAATGGCTCGCACGGGTGGTCGTCTATTTTTGTCTCACATGGCACTCGCGTAAACC
CGCATGACGGGTCGAAGCCAGCCTGGGCCCGATTTGTCAGCCGGCCGCGGCTGCGTCAACCACAT
ACGGCTTCCAGGGTGCTTTTCCTGCTCGTCGCGTGCGCCTGCTTTCGGAAGTGGCGAGGTGGCGC
CCGTTGCGCGGTCCGATGCAACGGTGAAGGCCGGTGGGTGCGGTGGGAGGCAGGATTTGGTAGCG
GTAGGCGTGGGTTTCGGTGGTGAAGGGAGGACGGGGTGGTTTGGGGAGTGGTCACGGGGGTTTAG
CGATGGGTGTGGTTTTGTGGTGCTTATCAGAGTCACCGTACCTTTATCTTCGTGCGTTTGCGTAG
GTCTACAAGTAGAATTGTAACGGTGTTTAGGCTGCAGTGACGGGT
Right flanking sequence: Indices 461493 -- 461992
CCTGAAGTGGTGGCCTGGTCGTGTTGGCTCGCAATGGTAGGCTCGCAGTGGCGTCTCTGGCTCCG
CGACCTTGCTCCGTCACCTCACATTCCGCTTATCACTGCGACATAGTAATTATGATAGGACCAGT
AGACCAACAGAAACAGCCAAACCCACTATCCACACAACAAACCTAACCCATACAACAAACCTAAC
CCATACAACACAACACAACCCACCCCACTACATACACCACAATCCCCCACCACACAACCTCGCCA
TCCCAGCCCACACCACCCGTTCTCCCCTCTTTCTCATCAAATGACGGCAGCGAAAAAAATCAATC
CCCCTTTCAAAAAAAAAACACTCTATGGCGAAGCTGATCTTTGGGTTGGGATTTAAGAAGGAGGG
AACGCCCATGGACGACCTGGCGTCGGTTACGCTGAACGAGCAGGCCTCGTCCGCCAAGTTCATGC
CCAAGGGTCTCGCCACCCCGCAAGCAACCACCGCGATTGCCCAGG
Found at i:461487 original size:13 final size:13
Alignment explanation
Indices: 461439--461492 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
461429 CTGCAGTGAC
461439 GGGTTGAAGTAGT
1 GGGTTGAAGTAGT
* *
461452 GGGGTGAAGTGGT
1 GGGTTGAAGTAGT
*
461465 GGGATGAAGTAGT
1 GGGTTGAAGTAGT
* *
461478 GGGTTAAAGTGGT
1 GGGTTGAAGTAGT
461491 GG
1 GG
461493 CCTGAAGTGG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.22, C:0.00, G:0.52, T:0.26
Consensus pattern (13 bp):
GGGTTGAAGTAGT
Left flanking sequence: Indices 460939 -- 461438
CCAGGCCAACCGCCCACAGATCTCCCCGTGCAGCCAGCCGCACGGCCATCTCCGGCAACCCGACC
ACCCACGGGGGCACAATGGCTCGCACGGGTGGTCGTCTATTTTTGTCTCACATGGCACTCGCGTA
AACCCGCATGACGGGTCGAAGCCAGCCTGGGCCCGATTTGTCAGCCGGCCGCGGCTGCGTCAACC
ACATACGGCTTCCAGGGTGCTTTTCCTGCTCGTCGCGTGCGCCTGCTTTCGGAAGTGGCGAGGTG
GCGCCCGTTGCGCGGTCCGATGCAACGGTGAAGGCCGGTGGGTGCGGTGGGAGGCAGGATTTGGT
AGCGGTAGGCGTGGGTTTCGGTGGTGAAGGGAGGACGGGGTGGTTTGGGGAGTGGTCACGGGGGT
TTAGCGATGGGTGTGGTTTTGTGGTGCTTATCAGAGTCACCGTACCTTTATCTTCGTGCGTTTGC
GTAGGTCTACAAGTAGAATTGTAACGGTGTTTAGGCTGCAGTGAC
Right flanking sequence: Indices 461493 -- 461992
CCTGAAGTGGTGGCCTGGTCGTGTTGGCTCGCAATGGTAGGCTCGCAGTGGCGTCTCTGGCTCCG
CGACCTTGCTCCGTCACCTCACATTCCGCTTATCACTGCGACATAGTAATTATGATAGGACCAGT
AGACCAACAGAAACAGCCAAACCCACTATCCACACAACAAACCTAACCCATACAACAAACCTAAC
CCATACAACACAACACAACCCACCCCACTACATACACCACAATCCCCCACCACACAACCTCGCCA
TCCCAGCCCACACCACCCGTTCTCCCCTCTTTCTCATCAAATGACGGCAGCGAAAAAAATCAATC
CCCCTTTCAAAAAAAAAACACTCTATGGCGAAGCTGATCTTTGGGTTGGGATTTAAGAAGGAGGG
AACGCCCATGGACGACCTGGCGTCGGTTACGCTGAACGAGCAGGCCTCGTCCGCCAAGTTCATGC
CCAAGGGTCTCGCCACCCCGCAAGCAACCACCGCGATTGCCCAGG
Found at i:461498 original size:26 final size:26
Alignment explanation
Indices: 461443--461505 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
461433 AGTGACGGGT
* *
461443 TGAAGTAGTGGGGTGAAGTGGTGGGA
1 TGAAGTAGTGGGGTAAAGTGGTGGCA
* *
461469 TGAAGTAGTGGGTTAAAGTGGTGGCC
1 TGAAGTAGTGGGGTAAAGTGGTGGCA
*
461495 TGAAGTGGTGG
1 TGAAGTAGTGG
461506 CCTGGTCGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (26 bp):
TGAAGTAGTGGGGTAAAGTGGTGGCA
Left flanking sequence: Indices 460943 -- 461442
GCCAACCGCCCACAGATCTCCCCGTGCAGCCAGCCGCACGGCCATCTCCGGCAACCCGACCACCC
ACGGGGGCACAATGGCTCGCACGGGTGGTCGTCTATTTTTGTCTCACATGGCACTCGCGTAAACC
CGCATGACGGGTCGAAGCCAGCCTGGGCCCGATTTGTCAGCCGGCCGCGGCTGCGTCAACCACAT
ACGGCTTCCAGGGTGCTTTTCCTGCTCGTCGCGTGCGCCTGCTTTCGGAAGTGGCGAGGTGGCGC
CCGTTGCGCGGTCCGATGCAACGGTGAAGGCCGGTGGGTGCGGTGGGAGGCAGGATTTGGTAGCG
GTAGGCGTGGGTTTCGGTGGTGAAGGGAGGACGGGGTGGTTTGGGGAGTGGTCACGGGGGTTTAG
CGATGGGTGTGGTTTTGTGGTGCTTATCAGAGTCACCGTACCTTTATCTTCGTGCGTTTGCGTAG
GTCTACAAGTAGAATTGTAACGGTGTTTAGGCTGCAGTGACGGGT
Right flanking sequence: Indices 461506 -- 462005
CCTGGTCGTGTTGGCTCGCAATGGTAGGCTCGCAGTGGCGTCTCTGGCTCCGCGACCTTGCTCCG
TCACCTCACATTCCGCTTATCACTGCGACATAGTAATTATGATAGGACCAGTAGACCAACAGAAA
CAGCCAAACCCACTATCCACACAACAAACCTAACCCATACAACAAACCTAACCCATACAACACAA
CACAACCCACCCCACTACATACACCACAATCCCCCACCACACAACCTCGCCATCCCAGCCCACAC
CACCCGTTCTCCCCTCTTTCTCATCAAATGACGGCAGCGAAAAAAATCAATCCCCCTTTCAAAAA
AAAAACACTCTATGGCGAAGCTGATCTTTGGGTTGGGATTTAAGAAGGAGGGAACGCCCATGGAC
GACCTGGCGTCGGTTACGCTGAACGAGCAGGCCTCGTCCGCCAAGTTCATGCCCAAGGGTCTCGC
CACCCCGCAAGCAACCACCGCGATTGCCCAGGACCTGTTTGCCTA
Found at i:461500 original size:13 final size:13
Alignment explanation
Indices: 461456--461509 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
461446 AGTAGTGGGG
**
461456 TGAAGTGGTGGGA
1 TGAAGTGGTGGCC
* **
461469 TGAAGTAGTGGGT
1 TGAAGTGGTGGCC
*
461482 TAAAGTGGTGGCC
1 TGAAGTGGTGGCC
461495 TGAAGTGGTGGCC
1 TGAAGTGGTGGCC
461508 TG
1 TG
461510 GTCGTGTTGG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.20, C:0.07, G:0.46, T:0.26
Consensus pattern (13 bp):
TGAAGTGGTGGCC
Left flanking sequence: Indices 460956 -- 461455
AGATCTCCCCGTGCAGCCAGCCGCACGGCCATCTCCGGCAACCCGACCACCCACGGGGGCACAAT
GGCTCGCACGGGTGGTCGTCTATTTTTGTCTCACATGGCACTCGCGTAAACCCGCATGACGGGTC
GAAGCCAGCCTGGGCCCGATTTGTCAGCCGGCCGCGGCTGCGTCAACCACATACGGCTTCCAGGG
TGCTTTTCCTGCTCGTCGCGTGCGCCTGCTTTCGGAAGTGGCGAGGTGGCGCCCGTTGCGCGGTC
CGATGCAACGGTGAAGGCCGGTGGGTGCGGTGGGAGGCAGGATTTGGTAGCGGTAGGCGTGGGTT
TCGGTGGTGAAGGGAGGACGGGGTGGTTTGGGGAGTGGTCACGGGGGTTTAGCGATGGGTGTGGT
TTTGTGGTGCTTATCAGAGTCACCGTACCTTTATCTTCGTGCGTTTGCGTAGGTCTACAAGTAGA
ATTGTAACGGTGTTTAGGCTGCAGTGACGGGTTGAAGTAGTGGGG
Right flanking sequence: Indices 461510 -- 462009
GTCGTGTTGGCTCGCAATGGTAGGCTCGCAGTGGCGTCTCTGGCTCCGCGACCTTGCTCCGTCAC
CTCACATTCCGCTTATCACTGCGACATAGTAATTATGATAGGACCAGTAGACCAACAGAAACAGC
CAAACCCACTATCCACACAACAAACCTAACCCATACAACAAACCTAACCCATACAACACAACACA
ACCCACCCCACTACATACACCACAATCCCCCACCACACAACCTCGCCATCCCAGCCCACACCACC
CGTTCTCCCCTCTTTCTCATCAAATGACGGCAGCGAAAAAAATCAATCCCCCTTTCAAAAAAAAA
ACACTCTATGGCGAAGCTGATCTTTGGGTTGGGATTTAAGAAGGAGGGAACGCCCATGGACGACC
TGGCGTCGGTTACGCTGAACGAGCAGGCCTCGTCCGCCAAGTTCATGCCCAAGGGTCTCGCCACC
CCGCAAGCAACCACCGCGATTGCCCAGGACCTGTTTGCCTACGGG
Found at i:461709 original size:19 final size:18
Alignment explanation
Indices: 461656--461697 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
461646 CACTATCCAC
461656 ACAACAAACCTAACCCAT
1 ACAACAAACCTAACCCAT
461674 ACAACAAACCTAACCCAT
1 ACAACAAACCTAACCCAT
461692 ACAACA
1 ACAACA
461698 CAACACAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.52, C:0.38, G:0.00, T:0.10
Consensus pattern (18 bp):
ACAACAAACCTAACCCAT
Left flanking sequence: Indices 461156 -- 461655
TTCCTGCTCGTCGCGTGCGCCTGCTTTCGGAAGTGGCGAGGTGGCGCCCGTTGCGCGGTCCGATG
CAACGGTGAAGGCCGGTGGGTGCGGTGGGAGGCAGGATTTGGTAGCGGTAGGCGTGGGTTTCGGT
GGTGAAGGGAGGACGGGGTGGTTTGGGGAGTGGTCACGGGGGTTTAGCGATGGGTGTGGTTTTGT
GGTGCTTATCAGAGTCACCGTACCTTTATCTTCGTGCGTTTGCGTAGGTCTACAAGTAGAATTGT
AACGGTGTTTAGGCTGCAGTGACGGGTTGAAGTAGTGGGGTGAAGTGGTGGGATGAAGTAGTGGG
TTAAAGTGGTGGCCTGAAGTGGTGGCCTGGTCGTGTTGGCTCGCAATGGTAGGCTCGCAGTGGCG
TCTCTGGCTCCGCGACCTTGCTCCGTCACCTCACATTCCGCTTATCACTGCGACATAGTAATTAT
GATAGGACCAGTAGACCAACAGAAACAGCCAAACCCACTATCCAC
Right flanking sequence: Indices 461698 -- 462197
CAACACAACCCACCCCACTACATACACCACAATCCCCCACCACACAACCTCGCCATCCCAGCCCA
CACCACCCGTTCTCCCCTCTTTCTCATCAAATGACGGCAGCGAAAAAAATCAATCCCCCTTTCAA
AAAAAAAACACTCTATGGCGAAGCTGATCTTTGGGTTGGGATTTAAGAAGGAGGGAACGCCCATG
GACGACCTGGCGTCGGTTACGCTGAACGAGCAGGCCTCGTCCGCCAAGTTCATGCCCAAGGGTCT
CGCCACCCCGCAAGCAACCACCGCGATTGCCCAGGACCTGTTTGCCTACGGGCTGACCACGGGGG
CGGGCAATTCCCAGGGGTTCCTCAACACATTGAGCCAGGGCCACCCGGCCGCGGCTCCGGTGGCG
GCGCCTGCTCCCTGGAGCACCGGGCTCCGGCCCTACGGCAACGACCCCGTGATCATCACCACCGA
CGAGCTGGGCCAGACCATCGGCGAGCTGGCAGACAAACTGCAGCC
Found at i:465672 original size:12 final size:12
Alignment explanation
Indices: 465633--465678 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 12
465623 AAGGTGGTGG
465633 GGTGGTAG-GGT
1 GGTGGTAGAGGT
465644 GGTGGTAGAGCAAGT
1 GGTGGTAGAG---GT
465659 GGTGGTAGAGGT
1 GGTGGTAGAGGT
465671 GGTGGTAG
1 GGTGGTAG
465679 GTGATAGAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 8 0.26
12 11 0.35
15 12 0.39
ACGTcount: A:0.17, C:0.02, G:0.57, T:0.24
Consensus pattern (12 bp):
GGTGGTAGAGGT
Left flanking sequence: Indices 465133 -- 465632
AAGGACTGGGTGCTCGAGCCCACCAAGATAGGCGCCCAGGAGCCGGGATACGCGCTCGACGACCC
CGAGTACGTGTACCAGCGGGCCCAGACGGACCGGCTCGCGGAGGCGTCGGCCGAGGAGGTGGAGC
TGGTGCTCGCCGAGGTCGAGCGCGAGTACAAGCACAAGTTTGGCCGCGAGTACCGCGCGCTGGGG
GCACCGGTGCCCTACAGCCACCGGTTCGGGCCCGTGGACGAGGCTCCTGCCGACTACGACCCGGC
CAAGGTGGTGAAGGCGATGCCGGCGCCCCAGGCCAACGGCGGGGACTTGTTTGGCGGGTTTGGCG
ACGACAAGTACGGCGACGACATGTTCAAGGGCCAGGGCAACATGGAGATGGGCATGGGCGACTTG
ATCAACTTTGACGGGGAGATGGCCGGGTTTGACGACGCCGAGTTTTTGAACAACATCAACTAGGC
TGGGCCTGCTATGTATTATAATGAATTAATAAGAGAAGGTGGTGG
Right flanking sequence: Indices 465679 -- 466178
GTGATAGAGCCCAGTGGTGGAAGAGCCCAGTGTAGAGAGCTAGTATGGCTTGCTAAGACTTACTC
AGATTCACTCATGGTCAAGTGCAACCATTGAATAGTTGAACAAGGGTTCAAAGTAGATATCACGA
GTGGTTTGGAGTGTATTGGTTACCTTCTTCACGGTTACCGTCGGGTTGGGTCTTCAGTTACTTCT
GTCCATGGACCAATCGGAACTCTTGGTAGTAGACTCAATCCTAAGCAAGCTCGTGGCTGAATACT
CCATCGCAGCCAGTTTCTACCAATTACTAGTTACGTCACCTACAACCACGGTACGTGAGTGGTTA
TGCGTCTGACGATTCCCTCGGGTAAACTAGCAGCTTCGAAACTAGACCAGTGGTTACGGCTTGCC
CGAAGGTCCTCACTTCGAGTCCACTGAAGATGCATTTGTACACTGTAAGTCCTAGTTGCAACCTT
TTGGGTTTAATGGCACCTATTACAGCTACCTGGGACCGTTGCATC
Found at i:466622 original size:13 final size:13
Alignment explanation
Indices: 466604--466628 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
466594 AGGCACCAGT
466604 GACGGTTCACCAA
1 GACGGTTCACCAA
466617 GACGGTTCACCA
1 GACGGTTCACCA
466629 GCCAGTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (13 bp):
GACGGTTCACCAA
Left flanking sequence: Indices 466104 -- 466603
TTGTACACTGTAAGTCCTAGTTGCAACCTTTTGGGTTTAATGGCACCTATTACAGCTACCTGGGA
CCGTTGCATCGCTCTTCCTACCTTATCATGATTACCGTCGCACTCGGTTGCACTTGCACACACCC
ACTCGGTTCTTTTGCACCTCAGTCACTCCCTCCGAGGAGGTACCACCGTGCAACACACCCAATAA
CACACTTCTCCGTAATCCAAACCGCTTAAATTACGACCTATACCTTAAACACGTCCTACGTTCCC
ACCGTCGCTGCCAAGCTACCAGCGCGCCGCGTCCTATTTATAGAATGTCGTTTAAAATATGCCAC
CGAAGCGAATGTGTCAACTGCCAGTGGCTCCCATCTGGCTGATTACAATCGCGACGCGTCTCGGG
CGAATGGACGTGTCGTACCCACGCACCGCTGACATTGTCGGGGTCGTTCACGTGTAGCATCGGGT
GTCGGCCCACCGGATGGTGGTTGCAGTGAGGCTGAAGGCACCAGT
Right flanking sequence: Indices 466629 -- 467128
GCCAGTTTTAAAGGTTACAGTGCTTCTGCCGTCACCGTGGGTCACGTCTACCGTCGCTTAGTACT
ACCGCTGCATAGCCCGTGGTCTTCGCCCACAGCCCTCGTCGTCTGCATTGGGTTGCGTTTCCGCG
TACATATTTCCGCAGACGAACTAGGGTTGATCCGAGCACTGATCTGATGCTCGCGACACAAACCC
ATCGGTGTTATCGATACTATTCACGTCGCTGTTTGGTATCGTCGTCTATCTTCCTTCCTCCTACC
CATCTTCCCTGCCTCCTACCCTTCTTACCTCCTACCCTTCTTACCTGCTACCTTCTTCCTTCCTT
GTTCTTTCCCACGCTTACCGCTACCAAACACCTACAAACACCACCTAAACGCATCTAAACACCCA
CCTAAACCCACCTATACACCCACGCAGCCAAAAAAGAAAACGAAACCGCAAAACCCCACACACAC
ACACCATAACCACCCCTCAAACCCACTACTCTTCTCTACCCTTCC
Found at i:466905 original size:20 final size:19
Alignment explanation
Indices: 466871--466914 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
466861 ATCGTCGTCT
*
466871 ATCTTCCTTCCTCCTACCC
1 ATCTTCCTGCCTCCTACCC
466890 ATCTTCCCTGCCTCCTACCC
1 ATCTT-CCTGCCTCCTACCC
*
466910 TTCTT
1 ATCTT
466915 ACCTCCTACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.09, C:0.50, G:0.02, T:0.39
Consensus pattern (19 bp):
ATCTTCCTGCCTCCTACCC
Left flanking sequence: Indices 466371 -- 466870
CTGCCAAGCTACCAGCGCGCCGCGTCCTATTTATAGAATGTCGTTTAAAATATGCCACCGAAGCG
AATGTGTCAACTGCCAGTGGCTCCCATCTGGCTGATTACAATCGCGACGCGTCTCGGGCGAATGG
ACGTGTCGTACCCACGCACCGCTGACATTGTCGGGGTCGTTCACGTGTAGCATCGGGTGTCGGCC
CACCGGATGGTGGTTGCAGTGAGGCTGAAGGCACCAGTGACGGTTCACCAAGACGGTTCACCAGC
CAGTTTTAAAGGTTACAGTGCTTCTGCCGTCACCGTGGGTCACGTCTACCGTCGCTTAGTACTAC
CGCTGCATAGCCCGTGGTCTTCGCCCACAGCCCTCGTCGTCTGCATTGGGTTGCGTTTCCGCGTA
CATATTTCCGCAGACGAACTAGGGTTGATCCGAGCACTGATCTGATGCTCGCGACACAAACCCAT
CGGTGTTATCGATACTATTCACGTCGCTGTTTGGTATCGTCGTCT
Right flanking sequence: Indices 466915 -- 467414
ACCTCCTACCCTTCTTACCTGCTACCTTCTTCCTTCCTTGTTCTTTCCCACGCTTACCGCTACCA
AACACCTACAAACACCACCTAAACGCATCTAAACACCCACCTAAACCCACCTATACACCCACGCA
GCCAAAAAAGAAAACGAAACCGCAAAACCCCACACACACACACCATAACCACCCCTCAAACCCAC
TACTCTTCTCTACCCTTCCCCTACCCTTCCACTTCTCTCCTACCTTTCTTCACCACTATCACGCG
CGTGAAAAAACCAACAACACGACATGGAGGGGCGACCAGGGCCGCTGGACGAGGTGCGCCAGCGG
ATATTCAGCCAGCCGCAGTTCCAGACGCGCGCCCGGCTCCGCCAGCAGAAGCTCCGTGTCACCTT
CATCGGCTACATCATCGTGCTAGTGTTTCTAGCCATGGTGCAGTTTGTCGGGGTGGGGTTCTTCA
CCCTGGGGTTTCTCTTGCGACGGGACGTGCTCCCCAACGTGGCCG
Found at i:466921 original size:16 final size:16
Alignment explanation
Indices: 466900--466945 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
466890 ATCTTCCCTG
466900 CCTCCTACCCTTCTTA
1 CCTCCTACCCTTCTTA
466916 CCTCCTACCCTTCTTA
1 CCTCCTACCCTTCTTA
*
466932 CCTGCTA-CCTTCTT
1 CCTCCTACCCTTCTT
466946 CCTTCCTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 7 0.24
16 22 0.76
ACGTcount: A:0.11, C:0.48, G:0.02, T:0.39
Consensus pattern (16 bp):
CCTCCTACCCTTCTTA
Left flanking sequence: Indices 466400 -- 466899
TTTATAGAATGTCGTTTAAAATATGCCACCGAAGCGAATGTGTCAACTGCCAGTGGCTCCCATCT
GGCTGATTACAATCGCGACGCGTCTCGGGCGAATGGACGTGTCGTACCCACGCACCGCTGACATT
GTCGGGGTCGTTCACGTGTAGCATCGGGTGTCGGCCCACCGGATGGTGGTTGCAGTGAGGCTGAA
GGCACCAGTGACGGTTCACCAAGACGGTTCACCAGCCAGTTTTAAAGGTTACAGTGCTTCTGCCG
TCACCGTGGGTCACGTCTACCGTCGCTTAGTACTACCGCTGCATAGCCCGTGGTCTTCGCCCACA
GCCCTCGTCGTCTGCATTGGGTTGCGTTTCCGCGTACATATTTCCGCAGACGAACTAGGGTTGAT
CCGAGCACTGATCTGATGCTCGCGACACAAACCCATCGGTGTTATCGATACTATTCACGTCGCTG
TTTGGTATCGTCGTCTATCTTCCTTCCTCCTACCCATCTTCCCTG
Right flanking sequence: Indices 466946 -- 467445
CCTTCCTTGTTCTTTCCCACGCTTACCGCTACCAAACACCTACAAACACCACCTAAACGCATCTA
AACACCCACCTAAACCCACCTATACACCCACGCAGCCAAAAAAGAAAACGAAACCGCAAAACCCC
ACACACACACACCATAACCACCCCTCAAACCCACTACTCTTCTCTACCCTTCCCCTACCCTTCCA
CTTCTCTCCTACCTTTCTTCACCACTATCACGCGCGTGAAAAAACCAACAACACGACATGGAGGG
GCGACCAGGGCCGCTGGACGAGGTGCGCCAGCGGATATTCAGCCAGCCGCAGTTCCAGACGCGCG
CCCGGCTCCGCCAGCAGAAGCTCCGTGTCACCTTCATCGGCTACATCATCGTGCTAGTGTTTCTA
GCCATGGTGCAGTTTGTCGGGGTGGGGTTCTTCACCCTGGGGTTTCTCTTGCGACGGGACGTGCT
CCCCAACGTGGCCGAGGGGACCACCGACCCGGCGTATCTGAAGGC
Found at i:467022 original size:22 final size:22
Alignment explanation
Indices: 466989--467041 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
466979 AAACACCTAC
* *
466989 AAACA-CCACCTAAACGCATCT
1 AAACACCCACCTAAACCCACCT
467010 AAACACCCACCTAAACCCACCT
1 AAACACCCACCTAAACCCACCT
*
467032 ATACACCCAC
1 AAACACCCAC
467042 GCAGCCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (22 bp):
AAACACCCACCTAAACCCACCT
Left flanking sequence: Indices 466489 -- 466988
TCGGGCGAATGGACGTGTCGTACCCACGCACCGCTGACATTGTCGGGGTCGTTCACGTGTAGCAT
CGGGTGTCGGCCCACCGGATGGTGGTTGCAGTGAGGCTGAAGGCACCAGTGACGGTTCACCAAGA
CGGTTCACCAGCCAGTTTTAAAGGTTACAGTGCTTCTGCCGTCACCGTGGGTCACGTCTACCGTC
GCTTAGTACTACCGCTGCATAGCCCGTGGTCTTCGCCCACAGCCCTCGTCGTCTGCATTGGGTTG
CGTTTCCGCGTACATATTTCCGCAGACGAACTAGGGTTGATCCGAGCACTGATCTGATGCTCGCG
ACACAAACCCATCGGTGTTATCGATACTATTCACGTCGCTGTTTGGTATCGTCGTCTATCTTCCT
TCCTCCTACCCATCTTCCCTGCCTCCTACCCTTCTTACCTCCTACCCTTCTTACCTGCTACCTTC
TTCCTTCCTTGTTCTTTCCCACGCTTACCGCTACCAAACACCTAC
Right flanking sequence: Indices 467042 -- 467541
GCAGCCAAAAAAGAAAACGAAACCGCAAAACCCCACACACACACACCATAACCACCCCTCAAACC
CACTACTCTTCTCTACCCTTCCCCTACCCTTCCACTTCTCTCCTACCTTTCTTCACCACTATCAC
GCGCGTGAAAAAACCAACAACACGACATGGAGGGGCGACCAGGGCCGCTGGACGAGGTGCGCCAG
CGGATATTCAGCCAGCCGCAGTTCCAGACGCGCGCCCGGCTCCGCCAGCAGAAGCTCCGTGTCAC
CTTCATCGGCTACATCATCGTGCTAGTGTTTCTAGCCATGGTGCAGTTTGTCGGGGTGGGGTTCT
TCACCCTGGGGTTTCTCTTGCGACGGGACGTGCTCCCCAACGTGGCCGAGGGGACCACCGACCCG
GCGTATCTGAAGGCGGTGGTGCTCGTCATTGACGCTCTCCGCTTCGATTTCGCCGTCCCCGTGCC
CGAGCTGGCCCATCCCTACCACAACCTGCTCCCGGTGCTCCACGA
Found at i:470128 original size:18 final size:18
Alignment explanation
Indices: 470096--470145 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
470086 CGAGTAGGTT
470096 AGCAGGGGT-GTGTGTAA
1 AGCAGGGGTGGTGTGTAA
470113 AGCAGGGGTGGTGTGTAA
1 AGCAGGGGTGGTGTGTAA
470131 AGCAGGGGTGGTGTG
1 AGCAGGGGTGGTGTG
470146 GTAGAACGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 9 0.28
18 23 0.72
ACGTcount: A:0.20, C:0.06, G:0.52, T:0.22
Consensus pattern (18 bp):
AGCAGGGGTGGTGTGTAA
Left flanking sequence: Indices 469596 -- 470095
TCTTGGGGTACCAGCACTTCTTTTCCACCGGGCACCAGGCCACCATTCCCCTGGTGCAGTGGGAG
GTTGGCTTTATCACCACCGAGACCATCTGGTTTCCGTTTACCCACTTGAACATTGTGCTCAACAC
GTTTGGGCTGTTTATCGTTGTGGCGTTGGCGGTGCCGCTCATCACCCTCTGGAAGATTCCCCCCA
CCAACAAGCCCATCACCGTGCTTTCGCAGATCATTACCAACGTCACCACCATGCTCACCTACCAG
TTGGTGATTCTGTTGCTGCTGCTTGTGTTTGCCGCGCACTTCCGCCGCCACTTGATGGTGTGGAA
GATCTTTGCGCCGCGGTTCATGTTGAGCGGGATGTTGTTGATTGTCATGAACTTGACGTTGGTGT
TGGTGACGTTGTGGTTTGGCACGGGCAAGGTGGTGACCCAGGTGAACCGGATATTTGGGAAATAG
CGATAGAAGGATCGAGTCATAGATAACATAGATAACGAGTAGGTT
Right flanking sequence: Indices 470146 -- 470645
GTAGAACGTAGTGTGTTTTGTTGGTTTGGCTAGATATTGGCTACTTTTGATGGCTGCAAGTGATG
CATAATGGCTGCAAATGTTGCAGTATGCATGGTGGATTAAACACACTATTTGGAGGAGAAAGGTG
GTGAAACGTGTATGTCTTCGGTGTGAGCGAGTTTGAATGCCCGGGAGTTTGTTTCTATAATATTT
TCGTGCCTGGGACGTGATGGGATGGGGTGTTAATTCTACCACGTACCATTTAAATCTACTCAATA
GAGGAAACTTCCCCACGCAAAAGCGTTGGGGGGGTCTGGGGGGGCGCCGCCTGCGGCCCCCCCAG
CTACCACACAACCATTAACTCTTTCTTCCACCGATTTTAATCTTCGTATCACTATTCTGAGTATT
TTTCCACTCAGCATTAAACCTACAAGCCCTACACTTGATATCATTAAGTGATTCGACTTGTTAAA
TAGGTATTTGGAACCATATTTGACTATCGAAGCCCTATTTGTATT
Found at i:470232 original size:20 final size:20
Alignment explanation
Indices: 470195--470232 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
470185 GCTACTTTTG
*
470195 ATGGCTGCAAGTGATGCATA
1 ATGGCTGCAAATGATGCATA
*
470215 ATGGCTGCAAATGTTGCA
1 ATGGCTGCAAATGATGCA
470233 GTATGCATGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
ATGGCTGCAAATGATGCATA
Left flanking sequence: Indices 469695 -- 470194
CGTTTACCCACTTGAACATTGTGCTCAACACGTTTGGGCTGTTTATCGTTGTGGCGTTGGCGGTG
CCGCTCATCACCCTCTGGAAGATTCCCCCCACCAACAAGCCCATCACCGTGCTTTCGCAGATCAT
TACCAACGTCACCACCATGCTCACCTACCAGTTGGTGATTCTGTTGCTGCTGCTTGTGTTTGCCG
CGCACTTCCGCCGCCACTTGATGGTGTGGAAGATCTTTGCGCCGCGGTTCATGTTGAGCGGGATG
TTGTTGATTGTCATGAACTTGACGTTGGTGTTGGTGACGTTGTGGTTTGGCACGGGCAAGGTGGT
GACCCAGGTGAACCGGATATTTGGGAAATAGCGATAGAAGGATCGAGTCATAGATAACATAGATA
ACGAGTAGGTTAGCAGGGGTGTGTGTAAAGCAGGGGTGGTGTGTAAAGCAGGGGTGGTGTGGTAG
AACGTAGTGTGTTTTGTTGGTTTGGCTAGATATTGGCTACTTTTG
Right flanking sequence: Indices 470233 -- 470732
GTATGCATGGTGGATTAAACACACTATTTGGAGGAGAAAGGTGGTGAAACGTGTATGTCTTCGGT
GTGAGCGAGTTTGAATGCCCGGGAGTTTGTTTCTATAATATTTTCGTGCCTGGGACGTGATGGGA
TGGGGTGTTAATTCTACCACGTACCATTTAAATCTACTCAATAGAGGAAACTTCCCCACGCAAAA
GCGTTGGGGGGGTCTGGGGGGGCGCCGCCTGCGGCCCCCCCAGCTACCACACAACCATTAACTCT
TTCTTCCACCGATTTTAATCTTCGTATCACTATTCTGAGTATTTTTCCACTCAGCATTAAACCTA
CAAGCCCTACACTTGATATCATTAAGTGATTCGACTTGTTAAATAGGTATTTGGAACCATATTTG
ACTATCGAAGCCCTATTTGTATTATATGCTGTCTGTAAAGTCCTATTAAACCACCGGGTCTTCCA
TATCACTCCATTTCCTCGTTCTGTGCAATGTTCTCGGCCCACAGC
Found at i:473149 original size:15 final size:15
Alignment explanation
Indices: 473125--473162 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
473115 CTAAGAGCTT
*
473125 ACCGTATCCACTTTC
1 ACCGTGTCCACTTTC
473140 ACCGTGTCCACTTTC
1 ACCGTGTCCACTTTC
473155 ACCGTGTC
1 ACCGTGTC
473163 TTCAAATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.16, C:0.39, G:0.13, T:0.32
Consensus pattern (15 bp):
ACCGTGTCCACTTTC
Left flanking sequence: Indices 472625 -- 473124
GGTGCTCAGGTTCAGTCGCAGGTAGATCGGGGGTTCTCGGGTGGTGTCGCTAGCACTTGGGGGGC
GGTAGAGATGGCTGTACATGTGGTAGCTGGGGAGGATCAGACACACGGGCTTTGGCCGGTGACCG
TGGGTGTGGCCAGCAGCACCGGGCTGGTCGTCGGTCGGCATCGTACGGCTGTCGGCTGGAGTCTA
TTTTTGACATGGGGTTATTCACGGGCCAGGGTTCATAACAGGATGAGACGAGGAGAAAGGGGTCG
AGGAATGAAGAGGTTTTGGAGAATGAGACGTTTCGAGTAGGGGAGGCGGACACTGTTATTGGGGG
ATTCTTCACCACGACGACCTTTTGTGCACTTTTCGGACTATTTGCTCCCTCGGTTTTTGGAACCA
CCACCGTTGATCCACTTTTGTACCAGATCACACCGCTGTCTTCTCTAGCAAATTGCTTTTCTTCG
GCTGTGCTTTGTGCAAAGGTACCGGTCAGACGAGCCTAAGAGCTT
Right flanking sequence: Indices 473163 -- 473662
TTCAAATTGGTCCATTGGGTCGTCTTCCATATGCAGCCCTCCTAACCAACCCGTGTTACTCGTCA
CCACCACCGCTTCTATGCGTTATGTAGGGAAGATTCCACACCTTGACTGGCCCAAACCGCCATCA
GAACTCAATGCCCAACACACCGCCCCACCTCCACGACATCATCGCCTCGCTGTTTTCGTACCACC
TTTGGCGTGCATGGTTTGCAGCCATCGCCCATTTGGGTTGACACTAGCGAAGGCGCAAGCGAGCC
CCAACAGTTGCTAGCAGCCCCGGGCAACTACCCAACGGGGTTGTTGTAACCACTATGCTTCTTCT
TTTCTCTCTTTTGCACCTTCTTCGTCTGCCTCACTAACTCCGACCGTTTCGGGGCGTGGGCGATG
GCTCGGAGGATTCCGGTCCATGGCATTGATGCACCAGACAGGGGCCCCGGCGAGGCCACGGAGCA
GGCAAACGCGCTCGGAACAGGTAAAAGCCACCACCGGAAGGCGTT
Found at i:477663 original size:13 final size:12
Alignment explanation
Indices: 477651--477734 Score: 82
Period size: 13 Copynumber: 6.8 Consensus size: 12
477641 ATATCAACCT
477651 TTCCTTTCCACC
1 TTCCTTTCCACC
*
477663 TTCCTTATCTACC
1 TTCCTT-TCCACC
477676 TTCCTTATCCACC
1 TTCCTT-TCCACC
*
477689 TTCGCTATCCACC
1 TTC-CTTTCCACC
477702 TTTCCTTTCCACC
1 -TTCCTTTCCACC
*
477715 TTTCCTAT-CACC
1 -TTCCTTTCCACC
477727 TT-CTTTCC
1 TTCCTTTCC
477735 TCCTCCTCCC
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
10 3 0.05
11 3 0.05
12 10 0.16
13 41 0.66
14 5 0.08
ACGTcount: A:0.12, C:0.44, G:0.01, T:0.43
Consensus pattern (12 bp):
TTCCTTTCCACC
Left flanking sequence: Indices 477151 -- 477650
CTCCAAGCGACGTGGGAAACCCCTCGGGGGTAATGTAGTGAGTGCGGGTGTTTAGTTTCAAGCAA
GCGCCTCGTGCGGTGGGCGCGGTAACCCGTCAACCTTCTTGGGGTGTGGGGGTGCCGTCAAACGG
CCAATGATTTGTTAAAGAAAACCTGACAAATCAACTCAAAGGTTTAGCTTCAAGTGTCAGTTGTC
TGGTGCTTGTCTGAAGCGACCATAGTGTAGGTGAAGAAAACACTCCTGGCTGGATATGTGGTAAC
GGAATGGGAAAGTCTTGATCGAGATTACGTAAGAAATGAAGAGAGAGTAGATGTGGACTTCCATA
GTGATAAGGCCATACACTAGCAAGTGTCTGAGGTAGAGATGTAGGGAATCGTATTGTCTAGCCCA
TAACCATTCCTAAGATGCAGCACCACCTACGCTCTTCCTCTTTCTTAGACTATTTTCCACTGTTA
CTTCTCTCATTTCCCTCTCTACCTCCGTACCTTTCATATCAACCT
Right flanking sequence: Indices 477735 -- 478234
TCCTCCTCCCTCCTCCCTCCTCCCTCTCCTCCTCTTCCTCCCTCCTGCACCTCACGCACCTCTGA
AAAATTTCAAGCCTACCATACCACCATACCGAACCACAGCCCGATGTTCAGACTGGTTGTACGGA
GCTTCTCGGCGTCGTCGGTCGCCCTCAGAACCAACACCCTGACCCGGACCCGCGAAAACGTCCAC
GATCTCAAAACGTTCTTGAACCTCATTGGCCGCAACACCATCGAGCACCACGACGCCTTTGACGG
CGACTTGCAAAAGTTCTTGGGCACCAAGGGCCCCGAGATGAAGGCGATGGGCATCGACGTCCAGC
TGCGCAAGTACATGTTGCGGTGGATCCACAAGTTCCAGAACGACCTCGAGCCGTTGCGGGTGCAC
CGCCAGGGCAAGAAGAAGAACGGCGGTGAGCGCAAGGCGCGCGAGGTGGTGGCCAAGAAGAAGGC
GCTTGCGCGGTTGGAGGAGAAGGAGCGGTTCAAGCAGGAGGAGTT
Found at i:477663 original size:26 final size:25
Alignment explanation
Indices: 477634--477728 Score: 106
Period size: 26 Copynumber: 3.7 Consensus size: 25
477624 CTACCTCCGT
*
477634 ACCTTTCATATCAACCTTTCCTTTCC
1 ACCTTTCCTATC-ACCTTTCCTTTCC
477660 ACC-TTCCTTATCTACC-TTCCTTATCC
1 ACCTTTCC-TATC-ACCTTTCCTT-TCC
477686 ACC-TTCGCTATCCACCTTTCCTTTCC
1 ACCTTTC-CTAT-CACCTTTCCTTTCC
477712 ACCTTTCCTATCACCTT
1 ACCTTTCCTATCACCTT
477729 CTTTCCTCCT
Statistics
Matches: 61, Mismatches: 2, Indels: 13
0.80 0.03 0.17
Matches are distributed among these distances:
25 15 0.25
26 35 0.57
27 11 0.18
ACGTcount: A:0.16, C:0.42, G:0.01, T:0.41
Consensus pattern (25 bp):
ACCTTTCCTATCACCTTTCCTTTCC
Left flanking sequence: Indices 477134 -- 477633
GGGAAATCAACCTAAAACTCCAAGCGACGTGGGAAACCCCTCGGGGGTAATGTAGTGAGTGCGGG
TGTTTAGTTTCAAGCAAGCGCCTCGTGCGGTGGGCGCGGTAACCCGTCAACCTTCTTGGGGTGTG
GGGGTGCCGTCAAACGGCCAATGATTTGTTAAAGAAAACCTGACAAATCAACTCAAAGGTTTAGC
TTCAAGTGTCAGTTGTCTGGTGCTTGTCTGAAGCGACCATAGTGTAGGTGAAGAAAACACTCCTG
GCTGGATATGTGGTAACGGAATGGGAAAGTCTTGATCGAGATTACGTAAGAAATGAAGAGAGAGT
AGATGTGGACTTCCATAGTGATAAGGCCATACACTAGCAAGTGTCTGAGGTAGAGATGTAGGGAA
TCGTATTGTCTAGCCCATAACCATTCCTAAGATGCAGCACCACCTACGCTCTTCCTCTTTCTTAG
ACTATTTTCCACTGTTACTTCTCTCATTTCCCTCTCTACCTCCGT
Right flanking sequence: Indices 477729 -- 478228
CTTTCCTCCTCCTCCCTCCTCCCTCCTCCCTCTCCTCCTCTTCCTCCCTCCTGCACCTCACGCAC
CTCTGAAAAATTTCAAGCCTACCATACCACCATACCGAACCACAGCCCGATGTTCAGACTGGTTG
TACGGAGCTTCTCGGCGTCGTCGGTCGCCCTCAGAACCAACACCCTGACCCGGACCCGCGAAAAC
GTCCACGATCTCAAAACGTTCTTGAACCTCATTGGCCGCAACACCATCGAGCACCACGACGCCTT
TGACGGCGACTTGCAAAAGTTCTTGGGCACCAAGGGCCCCGAGATGAAGGCGATGGGCATCGACG
TCCAGCTGCGCAAGTACATGTTGCGGTGGATCCACAAGTTCCAGAACGACCTCGAGCCGTTGCGG
GTGCACCGCCAGGGCAAGAAGAAGAACGGCGGTGAGCGCAAGGCGCGCGAGGTGGTGGCCAAGAA
GAAGGCGCTTGCGCGGTTGGAGGAGAAGGAGCGGTTCAAGCAGGA
Found at i:477748 original size:7 final size:7
Alignment explanation
Indices: 477732--477780 Score: 61
Period size: 7 Copynumber: 7.6 Consensus size: 7
477722 TCACCTTCTT
477732 TCCT-CC
1 TCCTCCC
477738 TCCTCCC
1 TCCTCCC
477745 TCCTCCC
1 TCCTCCC
477752 TCCTCCC
1 TCCTCCC
477759 T-CT-CC
1 TCCTCCC
*
477764 TCCT-CT
1 TCCTCCC
477770 TCCTCCC
1 TCCTCCC
477777 TCCT
1 TCCT
477781 GCACCTCACG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
5 3 0.08
6 13 0.34
7 22 0.58
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (7 bp):
TCCTCCC
Left flanking sequence: Indices 477232 -- 477731
GCGCGGTAACCCGTCAACCTTCTTGGGGTGTGGGGGTGCCGTCAAACGGCCAATGATTTGTTAAA
GAAAACCTGACAAATCAACTCAAAGGTTTAGCTTCAAGTGTCAGTTGTCTGGTGCTTGTCTGAAG
CGACCATAGTGTAGGTGAAGAAAACACTCCTGGCTGGATATGTGGTAACGGAATGGGAAAGTCTT
GATCGAGATTACGTAAGAAATGAAGAGAGAGTAGATGTGGACTTCCATAGTGATAAGGCCATACA
CTAGCAAGTGTCTGAGGTAGAGATGTAGGGAATCGTATTGTCTAGCCCATAACCATTCCTAAGAT
GCAGCACCACCTACGCTCTTCCTCTTTCTTAGACTATTTTCCACTGTTACTTCTCTCATTTCCCT
CTCTACCTCCGTACCTTTCATATCAACCTTTCCTTTCCACCTTCCTTATCTACCTTCCTTATCCA
CCTTCGCTATCCACCTTTCCTTTCCACCTTTCCTATCACCTTCTT
Right flanking sequence: Indices 477781 -- 478280
GCACCTCACGCACCTCTGAAAAATTTCAAGCCTACCATACCACCATACCGAACCACAGCCCGATG
TTCAGACTGGTTGTACGGAGCTTCTCGGCGTCGTCGGTCGCCCTCAGAACCAACACCCTGACCCG
GACCCGCGAAAACGTCCACGATCTCAAAACGTTCTTGAACCTCATTGGCCGCAACACCATCGAGC
ACCACGACGCCTTTGACGGCGACTTGCAAAAGTTCTTGGGCACCAAGGGCCCCGAGATGAAGGCG
ATGGGCATCGACGTCCAGCTGCGCAAGTACATGTTGCGGTGGATCCACAAGTTCCAGAACGACCT
CGAGCCGTTGCGGGTGCACCGCCAGGGCAAGAAGAAGAACGGCGGTGAGCGCAAGGCGCGCGAGG
TGGTGGCCAAGAAGAAGGCGCTTGCGCGGTTGGAGGAGAAGGAGCGGTTCAAGCAGGAGGAGTTG
GAGGCCGAGAGCCGTGGTGAGAGAGACTTTTAACGACTGTACATA
Found at i:478338 original size:16 final size:16
Alignment explanation
Indices: 478304--478360 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
478294 ATAAAGGATT
*
478304 GGTAGGTTG-CGACTG
1 GGTAGGTTGCCTACTG
*
478319 GGTAGGTTGCCTATTG
1 GGTAGGTTGCCTACTG
478335 GGTAGGTTGCCTACTG
1 GGTAGGTTGCCTACTG
478351 GGTAGGTTGC
1 GGTAGGTTGC
478361 GTATACTAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
15 9 0.24
16 29 0.76
ACGTcount: A:0.12, C:0.14, G:0.42, T:0.32
Consensus pattern (16 bp):
GGTAGGTTGCCTACTG
Left flanking sequence: Indices 477804 -- 478303
TTTCAAGCCTACCATACCACCATACCGAACCACAGCCCGATGTTCAGACTGGTTGTACGGAGCTT
CTCGGCGTCGTCGGTCGCCCTCAGAACCAACACCCTGACCCGGACCCGCGAAAACGTCCACGATC
TCAAAACGTTCTTGAACCTCATTGGCCGCAACACCATCGAGCACCACGACGCCTTTGACGGCGAC
TTGCAAAAGTTCTTGGGCACCAAGGGCCCCGAGATGAAGGCGATGGGCATCGACGTCCAGCTGCG
CAAGTACATGTTGCGGTGGATCCACAAGTTCCAGAACGACCTCGAGCCGTTGCGGGTGCACCGCC
AGGGCAAGAAGAAGAACGGCGGTGAGCGCAAGGCGCGCGAGGTGGTGGCCAAGAAGAAGGCGCTT
GCGCGGTTGGAGGAGAAGGAGCGGTTCAAGCAGGAGGAGTTGGAGGCCGAGAGCCGTGGTGAGAG
AGACTTTTAACGACTGTACATAGTAATGCATTGATATAAAGGATT
Right flanking sequence: Indices 478361 -- 478860
GTATACTAGAGTGGTTTGTAGGTGAGCAATCTGGTGTGGTGGTCTGGTGTGGTGGTCTGGTTGAT
GTGCTGTGCACTGGTAAGCACATGTGGACACCAGGTGGTGCAACGAGAACGGAGAGTGAGGTAGT
GGGATAAACAAACCGTGGTATCACGAAAGTAATACAAGAGATTCACTGTGTATTTCTGTTACTGC
GTTGGTCCAAGATTCTTCCGATTGGTTTTTAATCTTGGCGGCTACTGATGTGGTTATCTTGTCGT
AGGCTCAGATCGGTAGGGCGAGCGATTCGTAAAAACACGGTTTCATCGCCCTTTGTGATTGCAAA
TTCACCATCTTTAGGGTTCAACTCCCTCGATGATCTCTACCCGCCAGTCTACTAGTTTCTATTGC
CTTCATCACTTGATCAGTTTGATTCTACTCGTAGAACACACCATGTTCTCACCATACTAGGCCAT
CTTAGGTTTTATAGTCTCTCCAAAAAAAAAACCTTACTCTCATAG
Found at i:478408 original size:13 final size:13
Alignment explanation
Indices: 478390--478421 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
478380 AGGTGAGCAA
478390 TCTGGTGTGGTGG
1 TCTGGTGTGGTGG
478403 TCTGGTGTGGTGG
1 TCTGGTGTGGTGG
478416 TCTGGT
1 TCTGGT
478422 TGATGTGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.09, G:0.50, T:0.41
Consensus pattern (13 bp):
TCTGGTGTGGTGG
Left flanking sequence: Indices 477890 -- 478389
CAGAACCAACACCCTGACCCGGACCCGCGAAAACGTCCACGATCTCAAAACGTTCTTGAACCTCA
TTGGCCGCAACACCATCGAGCACCACGACGCCTTTGACGGCGACTTGCAAAAGTTCTTGGGCACC
AAGGGCCCCGAGATGAAGGCGATGGGCATCGACGTCCAGCTGCGCAAGTACATGTTGCGGTGGAT
CCACAAGTTCCAGAACGACCTCGAGCCGTTGCGGGTGCACCGCCAGGGCAAGAAGAAGAACGGCG
GTGAGCGCAAGGCGCGCGAGGTGGTGGCCAAGAAGAAGGCGCTTGCGCGGTTGGAGGAGAAGGAG
CGGTTCAAGCAGGAGGAGTTGGAGGCCGAGAGCCGTGGTGAGAGAGACTTTTAACGACTGTACAT
AGTAATGCATTGATATAAAGGATTGGTAGGTTGCGACTGGGTAGGTTGCCTATTGGGTAGGTTGC
CTACTGGGTAGGTTGCGTATACTAGAGTGGTTTGTAGGTGAGCAA
Right flanking sequence: Indices 478422 -- 478921
TGATGTGCTGTGCACTGGTAAGCACATGTGGACACCAGGTGGTGCAACGAGAACGGAGAGTGAGG
TAGTGGGATAAACAAACCGTGGTATCACGAAAGTAATACAAGAGATTCACTGTGTATTTCTGTTA
CTGCGTTGGTCCAAGATTCTTCCGATTGGTTTTTAATCTTGGCGGCTACTGATGTGGTTATCTTG
TCGTAGGCTCAGATCGGTAGGGCGAGCGATTCGTAAAAACACGGTTTCATCGCCCTTTGTGATTG
CAAATTCACCATCTTTAGGGTTCAACTCCCTCGATGATCTCTACCCGCCAGTCTACTAGTTTCTA
TTGCCTTCATCACTTGATCAGTTTGATTCTACTCGTAGAACACACCATGTTCTCACCATACTAGG
CCATCTTAGGTTTTATAGTCTCTCCAAAAAAAAAACCTTACTCTCATAGTTTCTCGTACCTCCCA
CTACCCTCCACTACCTCTCTTACTTTCCCACACTCTCCCTCATCC
Found at i:478946 original size:15 final size:14
Alignment explanation
Indices: 478910--478938 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
478900 TTTCCCACAC
478910 TCTCCCTCATCCCT
1 TCTCCCTCATCCCT
478924 TCTCCCTCATCCCT
1 TCTCCCTCATCCCT
478938 T
1 T
478939 TCTTCCTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.55, G:0.00, T:0.38
Consensus pattern (14 bp):
TCTCCCTCATCCCT
Left flanking sequence: Indices 478410 -- 478909
TGGTGGTCTGGTTGATGTGCTGTGCACTGGTAAGCACATGTGGACACCAGGTGGTGCAACGAGAA
CGGAGAGTGAGGTAGTGGGATAAACAAACCGTGGTATCACGAAAGTAATACAAGAGATTCACTGT
GTATTTCTGTTACTGCGTTGGTCCAAGATTCTTCCGATTGGTTTTTAATCTTGGCGGCTACTGAT
GTGGTTATCTTGTCGTAGGCTCAGATCGGTAGGGCGAGCGATTCGTAAAAACACGGTTTCATCGC
CCTTTGTGATTGCAAATTCACCATCTTTAGGGTTCAACTCCCTCGATGATCTCTACCCGCCAGTC
TACTAGTTTCTATTGCCTTCATCACTTGATCAGTTTGATTCTACTCGTAGAACACACCATGTTCT
CACCATACTAGGCCATCTTAGGTTTTATAGTCTCTCCAAAAAAAAAACCTTACTCTCATAGTTTC
TCGTACCTCCCACTACCCTCCACTACCTCTCTTACTTTCCCACAC
Right flanking sequence: Indices 478939 -- 479438
TCTTCCTCCTCCTGCCTCCTCTCCCTTGCTTCCTCCTCCTCGTCACTGTTTACAATTATGAGCCT
TGGTGTTGTCATCGCCAACCGCCTATCTCGGCAAATCACCCCACCACCGCCCCACCCTAACTCAA
CCCTACTCCCCTTACTCCTCCACTCCCTCCCTCCCTCCCTATCCTCCCTCCCCCTCTCTTCTTTC
CTTTTTTCACCGCTCCCCTGGCCACCCCCACCACTTTCAAATCGCGCGCGCCTTTGTTTACCTTA
TGGACCAGTCAGTGTACACCGGTGCCCGGCGGCGCACCACCCCGCTCGGGGTGTCCCAGCGGGCC
AACCAGGGCGGCGACCGCAAGCTGGCGGAGCGGGCGGCGCTCCAGGCGCTCGAGCGGCCGCTGGC
CGACCCCCACGACGCGCTCGCCGCCGCGACCCGGCTCTTCTCCACGGCGGCCCCGGGCCCCCGGG
CGCTCGAGGTGGTGAACCGGCACCAGAACTACATCATTGGCCTCA
Found at i:479565 original size:12 final size:12
Alignment explanation
Indices: 479548--479643 Score: 96
Period size: 12 Copynumber: 8.5 Consensus size: 12
479538 GAAGAGGCAC
*
479548 CACAGGCACCAA
1 CACAGGTACCAA
*
479560 CACAGGTGCCAA
1 CACAGGTACCAA
479572 CACAGG---CAA
1 CACAGGTACCAA
*
479581 CACAGGTGCCAA
1 CACAGGTACCAA
*
479593 CACAGGTGCCAA
1 CACAGGTACCAA
*
479605 CACAGTTACCAA
1 CACAGGTACCAA
479617 CACAGG---CAA
1 CACAGGTACCAA
*
479626 CACAGTTACCAA
1 CACAGGTACCAA
479638 CACAGG
1 CACAGG
479644 CACAGGCATA
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
9 17 0.24
12 54 0.76
ACGTcount: A:0.39, C:0.34, G:0.20, T:0.07
Consensus pattern (12 bp):
CACAGGTACCAA
Left flanking sequence: Indices 479048 -- 479547
CACCGCCCCACCCTAACTCAACCCTACTCCCCTTACTCCTCCACTCCCTCCCTCCCTCCCTATCC
TCCCTCCCCCTCTCTTCTTTCCTTTTTTCACCGCTCCCCTGGCCACCCCCACCACTTTCAAATCG
CGCGCGCCTTTGTTTACCTTATGGACCAGTCAGTGTACACCGGTGCCCGGCGGCGCACCACCCCG
CTCGGGGTGTCCCAGCGGGCCAACCAGGGCGGCGACCGCAAGCTGGCGGAGCGGGCGGCGCTCCA
GGCGCTCGAGCGGCCGCTGGCCGACCCCCACGACGCGCTCGCCGCCGCGACCCGGCTCTTCTCCA
CGGCGGCCCCGGGCCCCCGGGCGCTCGAGGTGGTGAACCGGCACCAGAACTACATCATTGGCCTC
ATAGAGGCGAAGCACCACCGTGCCGCGCGGGTGCACCTCGCGCTCCTCCGCCGCCACCTCGCGCG
GATGGTGCGCGTGGAGGTGGCAGAGAGTGGAGGAGGAAGAGGCAC
Right flanking sequence: Indices 479644 -- 480143
CACAGGCATAGACCTTGGTCACACCACAAACCTTGGTCACACCAGCGCTGCCACCTCTCCCACTG
ACGACGACCCCTCCGTCGTCTTTGGCGTCCCCTACGCGCCCCAGCCGCTCTGGGCCAAGCCCGTG
GTGGCGTGGCACTTCCTCCTCGCCCAGGTGGCCCTCAACGAGGTGGCCAGTGCGCTCGGCGAGTT
TGCCGCCAACCGCGGCCCCGTGTGGACGGCGGCGGGGCTCGGCGAGATGGCCGTGTGGTTCGCTC
CGGGGCTGCTGTTGCTGCGGTGGATGGCGGCGGTGCCGGCCAACGCCGCCAAGTACCGGGCCAAT
GCCGTCAAGATCGCCAAGGGGATGGTGAGCGTGGTGCTGGCGCTTGTGCGCCAGGCGCCGGGGGG
GCCGTGGCGTGGGGCCCGGGCGGCGTTTGCCGGGTGCTACCGCGAGATGACGGGGGACGCTGCCA
TGGATAAGTATATTGGTGTGGGCGGCACTGGTACCCAGGCTACGC
Done.