sallet_2.scaffold.fasta.s130.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold11
Parameters: 2 7 7 80 10 50 500
Length:  600813

Tables:   1   2   3   

This is table  1  of  3  ( 282 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--140	54	2.6	53	94	2	235	5	29	31	33	1.81
764--847	42	2.2	37	83	12	98	11	41	25	21	1.87
735--835	42	2.4	42	100	0	202	12	42	25	18	1.86
901--929	15	1.9	15	100	0	58	0	55	24	20	1.44
1173--1208	15	2.4	15	95	0	63	2	47	25	25	1.65
41977--42025	21	2.2	21	82	10	53	16	30	18	34	1.93
93669--93707	18	2.2	18	85	0	51	20	12	46	20	1.83
109304--109355	18	2.9	18	77	11	61	51	3	38	5	1.44
109307--109336	15	2.0	15	100	0	60	53	0	40	6	1.27
117347--117410	30	2.1	30	91	0	101	17	29	39	14	1.88
117379--117420	21	2.0	21	86	9	59	19	33	33	14	1.91
117357--117422	30	2.2	30	86	0	87	19	33	34	12	1.89
120951--121016	10	6.5	10	88	8	98	21	0	50	28	1.49
122186--122220	9	4.0	9	85	7	54	2	22	20	54	1.58
122204--122276	22	3.3	21	84	9	85	1	30	9	58	1.38
122186--122276	8	11.9	8	78	14	95	1	28	12	58	1.41
122213--122255	14	3.1	14	96	0	77	0	32	6	60	1.23
124416--124475	20	3.1	20	86	13	90	38	6	26	28	1.81
124471--124534	14	4.6	14	90	9	96	42	10	21	25	1.85
126939--127008	18	4.1	18	76	14	67	10	15	55	18	1.67
126964--126994	15	2.1	15	93	0	53	3	19	54	22	1.58
127005--127029	6	4.2	6	100	0	50	32	16	52	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127007--127050	15	2.9	15	82	0	52	29	22	47	0	1.51
127066--127126	12	5.1	12	70	7	52	36	37	24	1	1.66
127064--127126	24	2.6	24	85	7	83	36	36	25	1	1.66
127112--127170	9	6.9	9	75	11	52	33	37	27	1	1.67
127139--127175	18	2.1	18	89	0	56	37	43	18	0	1.51
127112--127176	33	2.0	33	87	0	94	35	36	26	1	1.66
127128--127176	15	3.1	15	75	16	53	36	36	24	2	1.67
127553--127583	12	2.6	12	94	0	53	0	29	54	16	1.42
127566--127612	18	2.6	18	83	6	60	0	25	51	23	1.49
127573--127649	21	3.8	21	71	10	52	1	22	49	27	1.58
140066--140131	33	2.0	33	93	0	114	18	27	33	21	1.96
140073--140210	33	4.2	33	78	5	111	20	26	35	17	1.95
140118--140300	33	5.5	34	75	7	144	22	23	36	17	1.95
140121--140300	99	1.8	99	83	4	238	22	23	36	17	1.95
140106--140305	66	3.0	66	80	5	199	23	23	36	17	1.95
151879--151915	6	6.2	6	100	0	74	51	0	48	0	1.00
178116--178148	16	2.1	16	94	0	57	18	21	33	27	1.96
197380--197428	21	2.3	21	82	0	62	20	42	14	22	1.88
268430--268461	12	2.7	12	95	0	55	3	6	37	53	1.42
292997--293075	24	3.3	24	87	0	113	26	36	25	11	1.90
305629--305664	10	3.7	10	92	7	65	22	52	16	8	1.70
309917--309970	16	3.4	16	92	0	90	40	5	20	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364633--364746	54	2.1	54	86	0	156	32	26	29	11	1.91
364650--364865	120	1.8	120	81	8	269	29	27	31	11	1.91
364998--365392	123	3.2	123	82	1	380	28	28	30	13	1.94
366703--366784	21	3.8	21	71	24	64	19	39	28	13	1.89
367830--367880	14	3.6	14	89	0	75	11	5	43	39	1.66
367823--367885	14	4.4	14	87	2	72	11	4	42	41	1.61
377003--377031	12	2.4	12	100	0	58	17	48	27	6	1.72
390261--390308	14	3.5	14	85	2	62	14	50	2	33	1.55
401103--401153	9	5.7	9	83	0	66	13	49	25	11	1.76
410582--410678	39	2.6	37	80	4	97	35	22	34	8	1.84
410603--410667	18	3.4	18	72	12	67	32	23	33	10	1.89
410627--410667	21	2.0	21	85	0	55	31	19	36	12	1.89
412228--412280	27	2.1	24	89	10	79	47	0	50	1	1.12
418395--418425	12	2.6	12	100	0	62	25	35	16	22	1.94
434193--434242	18	2.8	18	87	0	73	34	26	24	16	1.95
434562--434613	18	2.9	18	79	0	68	32	26	25	15	1.95
435087--435171	6	14.2	6	87	0	116	16	65	5	11	1.43
435087--435171	24	3.5	24	93	0	143	16	65	5	11	1.43
440057--440152	18	5.3	18	81	3	104	33	21	11	33	1.89
440160--440305	18	8.4	18	80	7	149	27	23	12	36	1.90
440142--440284	67	2.2	66	88	1	205	29	20	13	37	1.90
440525--440586	3	20.7	3	79	0	52	3	29	40	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440680--440716	18	2.1	18	100	0	74	0	37	45	16	1.47
440731--440829	15	6.6	15	67	17	62	9	25	36	29	1.87
440731--440779	18	2.7	18	93	0	80	8	26	32	32	1.86
440782--440838	30	1.9	30	85	0	78	8	29	35	26	1.87
441764--441846	39	2.1	39	88	0	121	14	25	45	14	1.82
443448--443505	22	2.6	22	79	15	66	1	39	1	56	1.19
443460--443511	18	2.9	18	82	0	59	5	42	1	50	1.37
447683--447720	10	3.8	10	89	0	58	2	0	44	52	1.14
449162--449239	38	2.0	39	90	2	122	43	37	6	12	1.69
449162--449230	19	3.6	19	94	2	120	46	37	5	10	1.62
452220--452279	9	6.7	9	98	0	102	15	11	55	18	1.70
453048--453107	11	5.9	11	82	11	67	35	55	0	10	1.34
453053--453120	9	7.3	9	80	15	77	33	55	0	10	1.34
453053--453120	28	2.4	28	90	4	102	33	55	0	10	1.34
453053--453118	17	3.6	18	78	17	73	33	56	0	10	1.34
453879--453943	21	3.1	21	75	0	67	4	18	50	26	1.66
453886--453943	27	2.1	27	90	0	89	5	18	50	25	1.68
453876--453948	15	5.1	15	77	9	71	4	17	50	27	1.64
454956--455008	19	2.7	19	85	11	63	1	30	58	9	1.40
455023--455062	18	2.2	18	100	0	80	10	32	40	17	1.83
458761--458925	14	12.2	14	79	15	179	61	0	35	1	1.11
458761--458925	5	35.6	5	76	19	162	61	0	35	1	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458764--458925	9	17.6	9	80	14	163	62	0	35	1	1.11
459090--459123	14	2.4	14	90	0	50	11	23	38	26	1.89
460637--460696	16	3.6	16	90	4	93	40	31	21	6	1.79
462784--462833	12	4.2	12	89	0	73	18	46	20	16	1.85
462793--462841	24	2.2	22	85	10	64	16	42	24	16	1.87
463192--463257	12	5.6	12	87	3	80	28	21	24	25	1.99
463301--463424	30	4.1	30	93	0	203	25	9	33	31	1.88
467545--467583	14	2.8	14	100	0	78	12	7	51	28	1.67
467609--467679	11	6.5	11	86	0	79	16	12	26	43	1.84
467609--467688	33	2.4	33	85	0	79	15	12	28	43	1.82
467609--467750	22	6.5	22	81	0	122	12	16	30	40	1.86
467638--467741	11	9.5	11	89	0	118	10	17	33	38	1.84
467633--467750	33	3.6	33	81	0	137	11	17	32	38	1.86
467714--467750	11	3.4	11	96	0	65	8	21	35	35	1.83
467850--467885	18	2.0	18	100	0	72	16	33	22	27	1.95
473080--473105	13	2.0	13	100	0	52	23	30	15	30	1.95
474634--474718	5	17.6	5	74	7	50	9	65	0	24	1.22
474620--474680	20	3.2	18	73	11	59	9	63	0	26	1.25
474620--474689	19	3.7	19	75	11	63	12	61	0	25	1.32
474644--474699	19	3.2	19	69	23	59	14	58	0	26	1.36
474622--474710	19	4.4	19	67	24	56	11	64	0	24	1.26
475632--475660	12	2.4	12	100	0	58	10	58	31	0	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475657--475721	27	2.6	24	75	18	69	9	58	32	0	1.30
476375--476406	15	2.1	15	94	0	55	9	15	68	6	1.36
476493--476540	24	2.0	24	84	8	62	31	33	25	10	1.89
477128--477164	15	2.5	15	100	0	74	10	10	56	21	1.64
477276--477330	21	2.6	21	82	0	65	18	32	34	14	1.91
478979--479043	15	4.3	16	79	9	66	53	6	27	12	1.61
479663--479725	20	3.3	19	84	8	83	44	7	47	0	1.32
480289--480371	43	1.9	43	85	9	116	30	13	33	22	1.92
480365--480408	11	4.0	11	90	0	52	20	29	38	11	1.87
480377--480410	11	3.1	11	100	0	68	20	26	35	17	1.95

Tables:   1   2   3