Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold11
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 600813
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
File 1 of 3
Found at i:83 original size:54 final size:53
Alignment explanation
Indices: 1--140 Score: 235
Period size: 54 Copynumber: 2.6 Consensus size: 53
*
1 CTCTGAGGGTGCTGTGCCTTCGTCGTCTGCTGGTGAGTCTTCGTCTGTCCCCA
1 CTCTGAGGGTGCTGTGCCTTCGTCGTCTGCTGGTGAGTCTTCGTCCGTCCCCA
* *
54 CCTCTGAGGGTGCTGTGCCTTCGTCGTCTGCTGGTGAGTCTTCGTCCGTGCCTA
1 -CTCTGAGGGTGCTGTGCCTTCGTCGTCTGCTGGTGAGTCTTCGTCCGTCCCCA
108 CTACTGAGGGTGCTGTGCCTTCGTCGTCTGCTG
1 CT-CTGAGGGTGCTGTGCCTTCGTCGTCTGCTG
141 AGTCTTCTCC
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 2 0.02
54 80 0.98
ACGTcount: A:0.06, C:0.29, G:0.31, T:0.34
Consensus pattern (53 bp):
CTCTGAGGGTGCTGTGCCTTCGTCGTCTGCTGGTGAGTCTTCGTCCGTCCCCA
Left flanking sequence: None
Right flanking sequence: Indices 141 -- 640
AGTCTTCTCCCAGTGTGGCCGGTGATGTCCTGCTGACTATTCCTGGTCCTGGCACTGACTCTTCC
ACCACGGTCACCGTTACTTTGACCAACTCTTACTCCACTTGTGTCACTATCACCTCGTGTGACAA
CAACTCGTGCAATGAGGAGACTATCACGACTCACATCACTGTGACCAACACTGTCGAGACTTGTC
CTGAGGAGGAGACCCCCACTGTTACCTTGACTGTGACGAACGTTGGGACTTCTACTGAGACGATC
ACCAAGTGTGAGGGCGACAAGGACTGCCACACCACTGAGAAGGAACACCACGAGAGCCACGTTTT
CGTTGTCACAACCGTGTTGAAGACCGTGGAGAAGCCGGCTCCCTCCGCTCAGCCCACCAAGCCCG
TCTACATTCAGACACCTACCACTGTCACGAAGTGTGTTGGCGAGCATTGCACTCCTCATCCCACC
GTGGTGAATGTCCCTGTTGAGCTGGATGAGACCCAGTACAAGACA
Found at i:846 original size:36 final size:37
Alignment explanation
Indices: 764--847 Score: 98
Period size: 42 Copynumber: 2.2 Consensus size: 37
754 GGGTCCCGCA
* *
764 CCTGCTGCTCCTGCTCCTGGTGACAAGCCCCAGGGTCCCGC
1 CCTGCTGCTCCTGCTCCTGGTGACAAGCCCAACGGT----C
805 ACCTGCTGCTCCTGCTCCTGGTGACAAGCCCAACGGT-
1 -CCTGCTGCTCCTGCTCCTGGTGACAAGCCCAACGGTC
842 CCTGCT
1 CCTGCT
848 CCCGCTGCGC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
36 6 0.15
42 34 0.85
ACGTcount: A:0.12, C:0.42, G:0.25, T:0.21
Consensus pattern (37 bp):
CCTGCTGCTCCTGCTCCTGGTGACAAGCCCAACGGTC
Left flanking sequence: Indices 264 -- 763
GTGACAACAACTCGTGCAATGAGGAGACTATCACGACTCACATCACTGTGACCAACACTGTCGAG
ACTTGTCCTGAGGAGGAGACCCCCACTGTTACCTTGACTGTGACGAACGTTGGGACTTCTACTGA
GACGATCACCAAGTGTGAGGGCGACAAGGACTGCCACACCACTGAGAAGGAACACCACGAGAGCC
ACGTTTTCGTTGTCACAACCGTGTTGAAGACCGTGGAGAAGCCGGCTCCCTCCGCTCAGCCCACC
AAGCCCGTCTACATTCAGACACCTACCACTGTCACGAAGTGTGTTGGCGAGCATTGCACTCCTCA
TCCCACCGTGGTGAATGTCCCTGTTGAGCTGGATGAGACCCAGTACAAGACAATCCAGGTGACCC
TCACCCACGGACCCGACGAGCAGTCTCCCGCTGAGACCCCCGTGTGCGAGCCTGGTATGGCTTGC
GAGTACATTGTGATCACTCCTGGTGACAAGCCCCAGGGTCCCGCA
Right flanking sequence: Indices 848 -- 1347
CCCGCTGCGCCCGAGGGAGGTGCTCCTACTGATGCTCCTGGTGCTCCTGAGGCCTCGCCTGCCCC
TGGCTCGCCTGCCCCTGACACCCCTGAAGCTGCTCCTGCTCCCGGTGGCAAGCCTAACGGCCCTG
CTCCCGCTGCCCCTGAAGTTGCTCCTGGCGCTCCTGAGGCTACTCAGGTTCCTGAGAGTGGGAAT
CCTGCTCCTAAGGCTCCTGAGGCTGCTCCTTCGCCCGAAGGTGATACCACTGCTCCTGAGGCTGC
TCCCAAGGCTCCTGAGGGCGGTGCTCATGACGCTCCTAAGGATGCTCCTATTCCCGAGGGCGCCT
CTCCTGCTCCTGGCGCTCCTGCTCCTGGCGCACCTGAAGGCAACGCTCCTGGTGAGACTCACCCC
GAGGGTCCTTCTCCTACTGTTGCTGGCGAAGCCCACGAGCCCGTACAAACCCAACAGGCTATCCA
GGCTTCCCCTGTCCCTGAGGGTGTCCAGACCGCTGGGGCCCCCGA
Found at i:855 original size:42 final size:42
Alignment explanation
Indices: 735--835 Score: 202
Period size: 42 Copynumber: 2.4 Consensus size: 42
725 ATTGTGATCA
735 CTCCTGGTGACAAGCCCCAGGGTCCCGCACCTGCTGCTCCTG
1 CTCCTGGTGACAAGCCCCAGGGTCCCGCACCTGCTGCTCCTG
777 CTCCTGGTGACAAGCCCCAGGGTCCCGCACCTGCTGCTCCTG
1 CTCCTGGTGACAAGCCCCAGGGTCCCGCACCTGCTGCTCCTG
819 CTCCTGGTGACAAGCCC
1 CTCCTGGTGACAAGCCC
836 AACGGTCCTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.13, C:0.43, G:0.26, T:0.19
Consensus pattern (42 bp):
CTCCTGGTGACAAGCCCCAGGGTCCCGCACCTGCTGCTCCTG
Left flanking sequence: Indices 235 -- 734
TTACTCCACTTGTGTCACTATCACCTCGTGTGACAACAACTCGTGCAATGAGGAGACTATCACGA
CTCACATCACTGTGACCAACACTGTCGAGACTTGTCCTGAGGAGGAGACCCCCACTGTTACCTTG
ACTGTGACGAACGTTGGGACTTCTACTGAGACGATCACCAAGTGTGAGGGCGACAAGGACTGCCA
CACCACTGAGAAGGAACACCACGAGAGCCACGTTTTCGTTGTCACAACCGTGTTGAAGACCGTGG
AGAAGCCGGCTCCCTCCGCTCAGCCCACCAAGCCCGTCTACATTCAGACACCTACCACTGTCACG
AAGTGTGTTGGCGAGCATTGCACTCCTCATCCCACCGTGGTGAATGTCCCTGTTGAGCTGGATGA
GACCCAGTACAAGACAATCCAGGTGACCCTCACCCACGGACCCGACGAGCAGTCTCCCGCTGAGA
CCCCCGTGTGCGAGCCTGGTATGGCTTGCGAGTACATTGTGATCA
Right flanking sequence: Indices 836 -- 1335
AACGGTCCTGCTCCCGCTGCGCCCGAGGGAGGTGCTCCTACTGATGCTCCTGGTGCTCCTGAGGC
CTCGCCTGCCCCTGGCTCGCCTGCCCCTGACACCCCTGAAGCTGCTCCTGCTCCCGGTGGCAAGC
CTAACGGCCCTGCTCCCGCTGCCCCTGAAGTTGCTCCTGGCGCTCCTGAGGCTACTCAGGTTCCT
GAGAGTGGGAATCCTGCTCCTAAGGCTCCTGAGGCTGCTCCTTCGCCCGAAGGTGATACCACTGC
TCCTGAGGCTGCTCCCAAGGCTCCTGAGGGCGGTGCTCATGACGCTCCTAAGGATGCTCCTATTC
CCGAGGGCGCCTCTCCTGCTCCTGGCGCTCCTGCTCCTGGCGCACCTGAAGGCAACGCTCCTGGT
GAGACTCACCCCGAGGGTCCTTCTCCTACTGTTGCTGGCGAAGCCCACGAGCCCGTACAAACCCA
ACAGGCTATCCAGGCTTCCCCTGTCCCTGAGGGTGTCCAGACCGC
Found at i:921 original size:15 final size:15
Alignment explanation
Indices: 901--929 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
891 CTCCTGAGGC
901 CTCGCCTGCCCCTGG
1 CTCGCCTGCCCCTGG
916 CTCGCCTGCCCCTG
1 CTCGCCTGCCCCTG
930 ACACCCCTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.55, G:0.24, T:0.21
Consensus pattern (15 bp):
CTCGCCTGCCCCTGG
Left flanking sequence: Indices 401 -- 900
ACCAAGTGTGAGGGCGACAAGGACTGCCACACCACTGAGAAGGAACACCACGAGAGCCACGTTTT
CGTTGTCACAACCGTGTTGAAGACCGTGGAGAAGCCGGCTCCCTCCGCTCAGCCCACCAAGCCCG
TCTACATTCAGACACCTACCACTGTCACGAAGTGTGTTGGCGAGCATTGCACTCCTCATCCCACC
GTGGTGAATGTCCCTGTTGAGCTGGATGAGACCCAGTACAAGACAATCCAGGTGACCCTCACCCA
CGGACCCGACGAGCAGTCTCCCGCTGAGACCCCCGTGTGCGAGCCTGGTATGGCTTGCGAGTACA
TTGTGATCACTCCTGGTGACAAGCCCCAGGGTCCCGCACCTGCTGCTCCTGCTCCTGGTGACAAG
CCCCAGGGTCCCGCACCTGCTGCTCCTGCTCCTGGTGACAAGCCCAACGGTCCTGCTCCCGCTGC
GCCCGAGGGAGGTGCTCCTACTGATGCTCCTGGTGCTCCTGAGGC
Right flanking sequence: Indices 930 -- 1429
ACACCCCTGAAGCTGCTCCTGCTCCCGGTGGCAAGCCTAACGGCCCTGCTCCCGCTGCCCCTGAA
GTTGCTCCTGGCGCTCCTGAGGCTACTCAGGTTCCTGAGAGTGGGAATCCTGCTCCTAAGGCTCC
TGAGGCTGCTCCTTCGCCCGAAGGTGATACCACTGCTCCTGAGGCTGCTCCCAAGGCTCCTGAGG
GCGGTGCTCATGACGCTCCTAAGGATGCTCCTATTCCCGAGGGCGCCTCTCCTGCTCCTGGCGCT
CCTGCTCCTGGCGCACCTGAAGGCAACGCTCCTGGTGAGACTCACCCCGAGGGTCCTTCTCCTAC
TGTTGCTGGCGAAGCCCACGAGCCCGTACAAACCCAACAGGCTATCCAGGCTTCCCCTGTCCCTG
AGGGTGTCCAGACCGCTGGGGCCCCCGACGTTCCCACCCCCAGCGCCTTGCACAACGCCGGTTCG
CATCTCCATGCCACTGGCGCATCGATCATGTTGGTCTTGATTTCT
Found at i:1193 original size:15 final size:15
Alignment explanation
Indices: 1173--1208 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
1163 GAGGGCGCCT
1173 CTCCTGCTCCTGGCG
1 CTCCTGCTCCTGGCG
1188 CTCCTGCTCCTGGCG
1 CTCCTGCTCCTGGCG
*
1203 CACCTG
1 CTCCTG
1209 AAGGCAACGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.03, C:0.47, G:0.25, T:0.25
Consensus pattern (15 bp):
CTCCTGCTCCTGGCG
Left flanking sequence: Indices 673 -- 1172
GCAGTCTCCCGCTGAGACCCCCGTGTGCGAGCCTGGTATGGCTTGCGAGTACATTGTGATCACTC
CTGGTGACAAGCCCCAGGGTCCCGCACCTGCTGCTCCTGCTCCTGGTGACAAGCCCCAGGGTCCC
GCACCTGCTGCTCCTGCTCCTGGTGACAAGCCCAACGGTCCTGCTCCCGCTGCGCCCGAGGGAGG
TGCTCCTACTGATGCTCCTGGTGCTCCTGAGGCCTCGCCTGCCCCTGGCTCGCCTGCCCCTGACA
CCCCTGAAGCTGCTCCTGCTCCCGGTGGCAAGCCTAACGGCCCTGCTCCCGCTGCCCCTGAAGTT
GCTCCTGGCGCTCCTGAGGCTACTCAGGTTCCTGAGAGTGGGAATCCTGCTCCTAAGGCTCCTGA
GGCTGCTCCTTCGCCCGAAGGTGATACCACTGCTCCTGAGGCTGCTCCCAAGGCTCCTGAGGGCG
GTGCTCATGACGCTCCTAAGGATGCTCCTATTCCCGAGGGCGCCT
Right flanking sequence: Indices 1209 -- 1708
AAGGCAACGCTCCTGGTGAGACTCACCCCGAGGGTCCTTCTCCTACTGTTGCTGGCGAAGCCCAC
GAGCCCGTACAAACCCAACAGGCTATCCAGGCTTCCCCTGTCCCTGAGGGTGTCCAGACCGCTGG
GGCCCCCGACGTTCCCACCCCCAGCGCCTTGCACAACGCCGGTTCGCATCTCCATGCCACTGGCG
CATCGATCATGTTGGTCTTGATTTCTTTCTTGTTGTAAGCAAGCCGATTTTTCTCGAGTGAGGCC
CACCTCCTCAATTATTTCAATGATACCTCCTCATATTTCTTGCATTCGCACCTTCGTTTCTGAGG
TTTATAAAAGTTGACATTTACATATTTAATGGATTACGATAATGATAATAGGGTAAAATGAAAAT
AGTGGTGTGCAAGACGGGATAGTTGTGAGATAAGCACCATAATACAACCAAAGGGAGGAGATGTA
TCCGACAGTTTCATAAATGAGGCCAGTGTTGTCTTATCAGACTGC
Found at i:42025 original size:24 final size:21
Alignment explanation
Indices: 41977--42025 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
41967 TCTCGGCTTC
* *
41977 GATCTCGTCCACGTACTTTTT
1 GATCTCGTCCACGTACTTCTG
41998 GATCTCGTCCACGGTCAACTTCTG
1 GATCTCGTCCAC-GT--ACTTCTG
42022 GATC
1 GATC
42026 ACGTTGTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 12 0.52
22 2 0.09
24 9 0.39
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.35
Consensus pattern (21 bp):
GATCTCGTCCACGTACTTCTG
Left flanking sequence: Indices 41477 -- 41976
GCCTTGGGTTATGGATACGCGGTGAACCGGGTTTCGAAAAAACATATTCGGGATGGTCGCAGAGA
CTAGCCGGGGAAGGCGGAATAGATGGGATAGCTGGAGGGTGTACCAAAGGTTACGCTGAACAAGT
AGAGAAATTCGTTTTTTGGCTCGGTTTTCGGGTCCAACCGTGCAGTTGACATACGTCAATGATGG
GATAGATCCCGGTGGCTAAAAAATAAGGGTGAGGGTACAATGTACGTGATTTGGTGGAAGAAAAG
GACTTGTGGAGTGTATTACAAAGAGACCCCACGGAACAAAGAAAAGCACCACTCAAAGCTGTCAC
ATTGATCAAGCCGAGTTCAGGATCAAATTGAGGACATTGACCACACTACGCTAGAGCTAGCTACC
TCAAAAAGTGATATCTACGACCAGCCATCTAATGTGCTTTCATTATCATATACATTACATCACTT
CTTGCCCTTCTTCTTCTTCTCCGCCTCCGCCTCCTTCTCGGCTTC
Right flanking sequence: Indices 42026 -- 42525
ACGTTGTGGGGCTTCATCACCAGCACCTCGATGTTCTTCGCACCGGTTTGCACCACCTCCAACAA
CAGCTTCACAGTCAACTTGATGGTGTCCTCGTCCGACAACTCCTCAGTGTAATTCTTTTCCAAGA
ACTCACGCACGGTCTTGGACGAACGGCCAATGGCGTGAGCCTTCCACGCGTTGTAGACACCGGAG
GGCTCAGTCTGATAGAGACGCGGAGTGGCATCGTTGTGGTCAAAACCTGCAATTATCGTGGCAAT
ACCGAACGGGCGCACACCACCCAGCTGGGTGTACTTTTGCTGGACACCAGCAACGTATTTGGTCA
TGTACTCGATGGTGACGGCATCTTCAAGCGTAAGACGGTGCGACTGGGCCTCCACCCGCGCCTTG
TCGACCAAAATACGCGCGTCAGCGTTCAACCCGGCGAAGGCCAACAAACAGTGGTTGTCGACCTT
GCAGAGCTTGCTCGGGGTAATTCTGGGGTCTTGCAACTTAAGGGT
Found at i:93707 original size:18 final size:18
Alignment explanation
Indices: 93669--93707 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
93659 CCACGAAGGT
*
93669 GGTGAATGCAAGTGCGGC
1 GGTGAATGCAAGTGCGAC
* *
93687 GGTGAGTGCAAGTGTGAC
1 GGTGAATGCAAGTGCGAC
93705 GGT
1 GGT
93708 TGCAAGAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.13, G:0.46, T:0.21
Consensus pattern (18 bp):
GGTGAATGCAAGTGCGAC
Left flanking sequence: Indices 93169 -- 93668
TTTGAATAACTCAAACACATTTAGTGGTAACTGTTGACAATTTTTTCCAATACTAATCTTTGGCC
CAAGGGGTAATTTCAAAGGGGTATCCCTTGAAATGTCGCTTACGTAATCCAATTGTAGGTTGTCA
GCTAACGATGCGGGGACTGCCTAATACCCCCCTCCCAGACAACTGCCGCAGAGATAAATCCTTGT
GGCATTGGGGTTGGAAGAACAATTTTCCAGGTCAATTGATTGATGGCACTTTAGCCCTGTGCTGT
TGACGACTTGAAAAATGTTACGTGGTCTCAATGATCCGTGACCTCTATTGTATGAAGGAACATCC
TTATGCACCTGTCATTATGTAAGCTGGTACACCCAGCCAATGGGAGTACTGGGCGCCTCGCACAC
ATAAAAGCGGGCCAAATCCCTGGCAATTGCTTCCATCAATTACTATCAACTACAAAATGAAGGAC
CTCGTTAACCAAATGTCTAGCTGCACCTGCTCTGGCCACGAAGGT
Right flanking sequence: Indices 93708 -- 94207
TGCAAGAAGTAAGCCACAGTAGTGGTTATCAGTACTTTTTAGGTATGAGTGAATAAACGTCCAAA
AGAAGACATTGTAAGCCATGGCTACGTAACCGCAATCCAATTGACTCTTTCACGACCGCTAAATG
ACGTTGTGACGGGCATTGGAACGATGGGCCCACACTGACAGCAGCAAATGCCGAGGCCCAAAAAA
GTGGGGTCTATCACGTGACTGTGCGTCTCAACTCAACATTTCTGTACGTTCTGCAAGAGAACATG
ATAAAGTAATTAGATAACGCAATAACCCCACGTTCATGTGCGGGAGTACGTTGATTGCCGCTACC
CGGGAATTCCACAAAATAATGCCAACTCAGATTATTCCATACGTTTCGTTATCATTACATCTATA
GTACAAAAACCCAATCATAAAATACCCACCCAAAAATTCAACAAAATGCAGTATATCCCGTCTCA
AATGCTTTCCAATGCAAATATTCATAATCATTTCTCAGTTCATTC
Found at i:109327 original size:18 final size:18
Alignment explanation
Indices: 109304--109355 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
109294 CTCCGGCAAG
109304 AAGAAGAAGAAGAAGGGT
1 AAGAAGAAGAAGAAGGGT
*
109322 AAGAAGAAGAAG-GGTGGT
1 AAGAAGAAGAAGAAG-GGT
* *
109340 AAGAAGCACAAGAAGG
1 AAGAAGAAGAAGAAGG
109356 AGAAAGAGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.04
18 26 0.93
19 1 0.04
ACGTcount: A:0.52, C:0.04, G:0.38, T:0.06
Consensus pattern (18 bp):
AAGAAGAAGAAGAAGGGT
Left flanking sequence: Indices 108804 -- 109303
CCCAGGTCAAACGCCGCAAGAAGTCCGGTAAGCACGGCCAGCGGTACCTGGTGGTGCAAGTGGGC
GCGCTGGTGATCCCCACCTTCAACCCTGGTTTCCGCGTGTACGAGTACAACATTACCCATTTGCC
CCTGCAAAAGGTGGCATTCGTTCCCTGGGAGGATTTCTTTGCGGGGGTGGCCAAGGAAATGAGCC
GACCCGTGGAAGTCAACTCGCAGGAGCTCGATAATACTTTCCCTCCCAAGCTGCCGAAGGACCTT
AAGTTGGGCCCTGGCTACACCCCGCAGCTCTTCTCCCCTGAACGGTACGTGCTGTACTACCTTGA
CTTGGAGCAGGTGAACGCTGGCAAGAAGAAGTTTGCCTACGAGATTGAGTACACCTCGGAAGACG
TTGGCTTCAAAGGGTTGTTAGTTGAAGACTGGCTCGAGTACGCTCGCACTTTGGCCCGTGCTGCA
GACATTGACTCCTTGGACGAGGACGAAGTGGACATCTCCGGCAAG
Right flanking sequence: Indices 109356 -- 109855
AGAAAGAGGCTCGCGAGAAGTGGGAACTGTTCCTCAAGTACAGTTTTGTCAGCAGTGACTACGAA
CACAAGGGGTATGGTTAAACAATAGATCACTGCCAGCCGGTTACAGCCTTGTTGGTACGCTCTAG
TAGCCTTGATATAACTCCGTGCGCTTGTGTACACGACTGCAGTTGAATACTGAGATTACTGGAGG
CCACTATAAATAGAATGAGAAGACACATTAGACGAACAAGTAGGATAAGAACACGCTTAACTACT
TAAGACACTTGACTAGACACGTAGCCACCTTCTCTTTCGTAATTTTACAAATTCCTTATGTTTAT
CATATCACGTGACCACGAGGGCACAACCCTAACGAAAATCCAGTGCGCGACGCAGCCAGTGAAAA
ATCTTCGGCAACGCAGAAACACTCCAACTAGGTTTCCATTAAATTCCTCTTGTCAGAAAGTCAAA
ATGGGTGGTACCAGAGAAAAGAAGGTTCAGTACTTCTCCAAGCTC
Found at i:109345 original size:15 final size:15
Alignment explanation
Indices: 109307--109336 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
109297 CGGCAAGAAG
109307 AAGAAGAAGAAGGGT
1 AAGAAGAAGAAGGGT
109322 AAGAAGAAGAAGGGT
1 AAGAAGAAGAAGGGT
109337 GGTAAGAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.40, T:0.07
Consensus pattern (15 bp):
AAGAAGAAGAAGGGT
Left flanking sequence: Indices 108807 -- 109306
AGGTCAAACGCCGCAAGAAGTCCGGTAAGCACGGCCAGCGGTACCTGGTGGTGCAAGTGGGCGCG
CTGGTGATCCCCACCTTCAACCCTGGTTTCCGCGTGTACGAGTACAACATTACCCATTTGCCCCT
GCAAAAGGTGGCATTCGTTCCCTGGGAGGATTTCTTTGCGGGGGTGGCCAAGGAAATGAGCCGAC
CCGTGGAAGTCAACTCGCAGGAGCTCGATAATACTTTCCCTCCCAAGCTGCCGAAGGACCTTAAG
TTGGGCCCTGGCTACACCCCGCAGCTCTTCTCCCCTGAACGGTACGTGCTGTACTACCTTGACTT
GGAGCAGGTGAACGCTGGCAAGAAGAAGTTTGCCTACGAGATTGAGTACACCTCGGAAGACGTTG
GCTTCAAAGGGTTGTTAGTTGAAGACTGGCTCGAGTACGCTCGCACTTTGGCCCGTGCTGCAGAC
ATTGACTCCTTGGACGAGGACGAAGTGGACATCTCCGGCAAGAAG
Right flanking sequence: Indices 109337 -- 109836
GGTAAGAAGCACAAGAAGGAGAAAGAGGCTCGCGAGAAGTGGGAACTGTTCCTCAAGTACAGTTT
TGTCAGCAGTGACTACGAACACAAGGGGTATGGTTAAACAATAGATCACTGCCAGCCGGTTACAG
CCTTGTTGGTACGCTCTAGTAGCCTTGATATAACTCCGTGCGCTTGTGTACACGACTGCAGTTGA
ATACTGAGATTACTGGAGGCCACTATAAATAGAATGAGAAGACACATTAGACGAACAAGTAGGAT
AAGAACACGCTTAACTACTTAAGACACTTGACTAGACACGTAGCCACCTTCTCTTTCGTAATTTT
ACAAATTCCTTATGTTTATCATATCACGTGACCACGAGGGCACAACCCTAACGAAAATCCAGTGC
GCGACGCAGCCAGTGAAAAATCTTCGGCAACGCAGAAACACTCCAACTAGGTTTCCATTAAATTC
CTCTTGTCAGAAAGTCAAAATGGGTGGTACCAGAGAAAAGAAGGT
Found at i:117388 original size:30 final size:30
Alignment explanation
Indices: 117347--117410 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
117337 GCCGTTGCCA
*
117347 GAGCTGATGGAGCCAGCGACGCCGCTGCTG
1 GAGCTGATGGAGCCAGCGAAGCCGCTGCTG
* *
117377 GAGCTGCTGGAGCCAGCGAAGCCGCTGCTT
1 GAGCTGATGGAGCCAGCGAAGCCGCTGCTG
117407 GAGC
1 GAGC
117411 CACTGAAGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.17, C:0.30, G:0.39, T:0.14
Consensus pattern (30 bp):
GAGCTGATGGAGCCAGCGAAGCCGCTGCTG
Left flanking sequence: Indices 116847 -- 117346
CCGCTGGCGGAGGTGCTGCTTCGACGCGTCCGACACCTCGCTGGCGAGCGCCAGGTGGTCGTCCG
CGGGCTCGTCGGGGATCTCGAGGTCGGTGACGTCACCGGTGTCGTAGTCGTCCTCGGTGTACTCG
CTGCCCTCCTCGGTGATCCGCTGGAGCCCCGAGTCCGGCTCGTACTCGGTGTACTCGTCGTCGTG
CTTCGACACGCTCATGTTGTTGACCATGTCCATGGTGTGTCCGCCCGGGTGCTGCATGTCGAACT
CGTCGTCGTCGTACCCCAGGGTGTACTGCAGGCTCTCGTCGTCGTCGGTGGCGACGCCGCCGCCG
ATCTTGCTCACCTTGGGCGTCAGGGTGGCGGTGGTCATCAGGGTGCTGATCGACGCGTGCACCTC
GTGGCGGTCCTTGAACCCCTGGCCCTTGATTTTTGAGTAGATGCTGTCGCCGCGCTGTTTGTATT
CGTCGGCCTTGCTGACGACCACCGCGGGCGCTGGAGCCGTTGCCA
Right flanking sequence: Indices 117411 -- 117910
CACTGAAGCCAGTGCCAGAGCTGCTGGAGCCGCCAGACTCGCCATCGCCGCCAGACCCGCTTCTG
GAGCCACCAGACTCGCTGGCATCGCCACATTCGCCAGCACCGCCACACCCGCCAGCACCGGTCGG
CTGCTCTGGAAGTCCTGGCACACCTTGTTGAGCTTCTCGCGGGTGTAGGTGTCGTACTCGCGGTA
CAACTTGAGCGGCGACAGCGGCGCCTGCACAGGAAACTTGAAGCTGGTGGGCGCCGGGTTCAGCG
GGCGCTCGTTGTCGGAGGTCATCGTCGACAGCATCAGCATGTCGTCGGCCAGGTCGTGCTCGTCG
GGGTCGGCGTCGCGCGACTTGTCGGCAAAGATGCTCTTGATTTTCCCGTGCTGGTGCTCCTTGAA
GTTCTCGTTGACCCGTTTCCACGCGGGCGTCTCCTGGACGCCCAGGTTGTGGATCATCGTGGCCG
TGGCGCCGGCGCCAAAACTGAAGTTCATTGTCGGAGGCTGCGACG
Found at i:117405 original size:21 final size:21
Alignment explanation
Indices: 117379--117420 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
117369 CGCTGCTGGA
117379 GCTGCTGGAGCCAGC-GAAGCC
1 GCTGCTGGAGCCA-CTGAAGCC
*
117400 GCTGCTTGAGCCACTGAAGCC
1 GCTGCTGGAGCCACTGAAGCC
117421 AGTGCCAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.14
Consensus pattern (21 bp):
GCTGCTGGAGCCACTGAAGCC
Left flanking sequence: Indices 116879 -- 117378
ACACCTCGCTGGCGAGCGCCAGGTGGTCGTCCGCGGGCTCGTCGGGGATCTCGAGGTCGGTGACG
TCACCGGTGTCGTAGTCGTCCTCGGTGTACTCGCTGCCCTCCTCGGTGATCCGCTGGAGCCCCGA
GTCCGGCTCGTACTCGGTGTACTCGTCGTCGTGCTTCGACACGCTCATGTTGTTGACCATGTCCA
TGGTGTGTCCGCCCGGGTGCTGCATGTCGAACTCGTCGTCGTCGTACCCCAGGGTGTACTGCAGG
CTCTCGTCGTCGTCGGTGGCGACGCCGCCGCCGATCTTGCTCACCTTGGGCGTCAGGGTGGCGGT
GGTCATCAGGGTGCTGATCGACGCGTGCACCTCGTGGCGGTCCTTGAACCCCTGGCCCTTGATTT
TTGAGTAGATGCTGTCGCCGCGCTGTTTGTATTCGTCGGCCTTGCTGACGACCACCGCGGGCGCT
GGAGCCGTTGCCAGAGCTGATGGAGCCAGCGACGCCGCTGCTGGA
Right flanking sequence: Indices 117421 -- 117920
AGTGCCAGAGCTGCTGGAGCCGCCAGACTCGCCATCGCCGCCAGACCCGCTTCTGGAGCCACCAG
ACTCGCTGGCATCGCCACATTCGCCAGCACCGCCACACCCGCCAGCACCGGTCGGCTGCTCTGGA
AGTCCTGGCACACCTTGTTGAGCTTCTCGCGGGTGTAGGTGTCGTACTCGCGGTACAACTTGAGC
GGCGACAGCGGCGCCTGCACAGGAAACTTGAAGCTGGTGGGCGCCGGGTTCAGCGGGCGCTCGTT
GTCGGAGGTCATCGTCGACAGCATCAGCATGTCGTCGGCCAGGTCGTGCTCGTCGGGGTCGGCGT
CGCGCGACTTGTCGGCAAAGATGCTCTTGATTTTCCCGTGCTGGTGCTCCTTGAAGTTCTCGTTG
ACCCGTTTCCACGCGGGCGTCTCCTGGACGCCCAGGTTGTGGATCATCGTGGCCGTGGCGCCGGC
GCCAAAACTGAAGTTCATTGTCGGAGGCTGCGACGTGGTGGTTTC
Found at i:117421 original size:30 final size:30
Alignment explanation
Indices: 117357--117422 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
117347 GAGCTGATGG
* ** *
117357 AGCCAGCGACGCCGCTGCTGGAGCTGCTGG
1 AGCCAGCGAAGCCGCTGCTGGAGCCACTGA
*
117387 AGCCAGCGAAGCCGCTGCTTGAGCCACTGA
1 AGCCAGCGAAGCCGCTGCTGGAGCCACTGA
117417 AGCCAG
1 AGCCAG
117423 TGCCAGAGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.33, G:0.35, T:0.12
Consensus pattern (30 bp):
AGCCAGCGAAGCCGCTGCTGGAGCCACTGA
Left flanking sequence: Indices 116857 -- 117356
AGGTGCTGCTTCGACGCGTCCGACACCTCGCTGGCGAGCGCCAGGTGGTCGTCCGCGGGCTCGTC
GGGGATCTCGAGGTCGGTGACGTCACCGGTGTCGTAGTCGTCCTCGGTGTACTCGCTGCCCTCCT
CGGTGATCCGCTGGAGCCCCGAGTCCGGCTCGTACTCGGTGTACTCGTCGTCGTGCTTCGACACG
CTCATGTTGTTGACCATGTCCATGGTGTGTCCGCCCGGGTGCTGCATGTCGAACTCGTCGTCGTC
GTACCCCAGGGTGTACTGCAGGCTCTCGTCGTCGTCGGTGGCGACGCCGCCGCCGATCTTGCTCA
CCTTGGGCGTCAGGGTGGCGGTGGTCATCAGGGTGCTGATCGACGCGTGCACCTCGTGGCGGTCC
TTGAACCCCTGGCCCTTGATTTTTGAGTAGATGCTGTCGCCGCGCTGTTTGTATTCGTCGGCCTT
GCTGACGACCACCGCGGGCGCTGGAGCCGTTGCCAGAGCTGATGG
Right flanking sequence: Indices 117423 -- 117922
TGCCAGAGCTGCTGGAGCCGCCAGACTCGCCATCGCCGCCAGACCCGCTTCTGGAGCCACCAGAC
TCGCTGGCATCGCCACATTCGCCAGCACCGCCACACCCGCCAGCACCGGTCGGCTGCTCTGGAAG
TCCTGGCACACCTTGTTGAGCTTCTCGCGGGTGTAGGTGTCGTACTCGCGGTACAACTTGAGCGG
CGACAGCGGCGCCTGCACAGGAAACTTGAAGCTGGTGGGCGCCGGGTTCAGCGGGCGCTCGTTGT
CGGAGGTCATCGTCGACAGCATCAGCATGTCGTCGGCCAGGTCGTGCTCGTCGGGGTCGGCGTCG
CGCGACTTGTCGGCAAAGATGCTCTTGATTTTCCCGTGCTGGTGCTCCTTGAAGTTCTCGTTGAC
CCGTTTCCACGCGGGCGTCTCCTGGACGCCCAGGTTGTGGATCATCGTGGCCGTGGCGCCGGCGC
CAAAACTGAAGTTCATTGTCGGAGGCTGCGACGTGGTGGTTTCCC
Found at i:120991 original size:10 final size:10
Alignment explanation
Indices: 120951--121016 Score: 98
Period size: 10 Copynumber: 6.5 Consensus size: 10
120941 GGGTAAAAGT
120951 GGTGAAGTT-
1 GGTGAAGTTG
120960 GGTGAAGTTG
1 GGTGAAGTTG
*
120970 GTGGGAAAGTTG
1 G-GTG-AAGTTG
120982 GGTGAAGTTG
1 GGTGAAGTTG
120992 GGTGAAGTTG
1 GGTGAAGTTG
121002 GGTGAAGTTG
1 GGTGAAGTTG
121012 GGTGA
1 GGTGA
121017 TGGTAGCACG
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
9 9 0.17
10 32 0.62
11 4 0.08
12 7 0.13
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (10 bp):
GGTGAAGTTG
Left flanking sequence: Indices 120451 -- 120950
GCCGGGTGCTGATGAACAACAAAAAGTTCCAGCACCAGCAGCACCAGGTGGCGCAGGCGGCGCAG
ATCCAGGCGGCGGCGGCGCTTCTGATGGGGATGGACCCCGCGGCAGCCATTGCCGCTGCTGCTGC
CGCTGCTGGTGGCTACCCGCCGCCCCACATGGCGATGTCGCATCCGATGGGCGGGCCGTCGTACC
CCAGCCAGCCCCACTACATGCACGACCCGGGTGCTGGGTCGATGTACGGCCTGTTTCGAGACAAA
CCCATGGGGGAGTTTGGCTTAGACGATTCATCCTTGATCCACCAGATGGGGTCAATGCATTTGTC
TGACGATCCTTACATTGCTATGGGCCAGCAACACCCCAATTTGTACATGCTGCCTGGCCCGTCGA
CCCGTCGAGACAAACGAGACCGCAAGTAGACGATATAATAAATACACTTTGTTTTAGAGGGTAGT
GAGTAGGTTGTGTGGTATTGCTACTGGTGGGAGATGGGTAAAAGT
Right flanking sequence: Indices 121017 -- 121516
TGGTAGCACGTGGTGTCAGGAACAACGCGCTGGGTGGTGGTACAGGAGAAAGAATATTGAAAGAA
GGGGTGGATGGTACACAACAACGTCTGTGTAGTCTACAACACGGGTCGCTTTGTTTCTACGATCT
TCTCCAACTATCCTCCTTTTTACCAAACCATCCTCCAATTTACCAAATACTTGCAAAACCAACAC
AATGAAGTGCCACCACGGCGCATCGACCTACAACAACCTGCTTCGCAACAGTGACACCAGCAGTG
CCACCAGCACTTCTACCCAGCACTGCTACGCAGCACCGACTTCTCTACATTCTATCTCTTAAAAC
ATAATATTCCAACTATAAATTCCCAAAACATAAATCATTACGAGCCCCTTAGGATCTCTCACCTC
TCAATCTTCTAGCCAACTGGATGTCCTTCTTCTGGATGGTGACTCTCTTGGCGTGGATAGCACAC
AAGTTGGTGTCCTCAAACAACGACACCAAGTAGGCCTCAACGGCT
Found at i:122200 original size:9 final size:9
Alignment explanation
Indices: 122186--122220 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
122176 GAATTGTATA
122186 GTTTCTCTG
1 GTTTCTCTG
122195 GTTTCTCTG
1 GTTTCTCTG
*
122204 GTTTCACT-
1 GTTTCTCTG
122212 GTTTCTCTG
1 GTTTCTCTG
122221 CTTCTCTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.03, C:0.23, G:0.20, T:0.54
Consensus pattern (9 bp):
GTTTCTCTG
Left flanking sequence: Indices 121686 -- 122185
GCTTCTTGACACCACCAGAAACGGGGGCCGACTTACGGGCAGCCTTGGAGGCCAACTGCTTTCTG
GGGGCCTTACCACCGGTGGACTTTCTCGCGGTTTGCTTCGTACGAGCCATTTGTAATAAAGTGTG
TTAGGTGGAAAAAATTTACGTCGATGCGGATTAAGGGTTATATATGAGGAAAAGGGATGACCCGA
AAAAGTGAGGTGAGAAGCGCCACTGCCACGTCCGCCCGGCAATGCGAAAAAATCTAGCACTACTG
ATTTCCGCCACTTAACTATGGGCAATTCTTTGAGCCAGTGCGCACAAGTCGTGCGCGCACCAAAC
AGGGGATCTCACCTCCCTTTCTGTTAAATGACTGCATGAAATGCAGGACTTGCCGAACCTGTGTG
GGGCCGCTAACTAGTGTGGGTGGGGAAGGGTGTCAAGGTGTCGAAACAAAAATGACGCTACTGGC
GAATCAGACTCGCATCGGTATTCAGTTTCAATTTCGAATTGTATA
Right flanking sequence: Indices 122221 -- 122720
CTTCTCTTTCTCTGCTTCTCTTTCTCTGTTTCTCTGTTTCTCTTTCTCTGTTTCTCATAATTACT
CCGGTCTATATCTTTTATGTTCTATTGGATACATAATGCATTTGTGCTCGAGGTCGAGCGATGAA
CGTCGACGCTTAGTTTCTCCACCACATTCTCGTGATCTTGTGCTTCATCATCTTCTTCTGCAACT
GGAAAACACCGTACATCAAGGCCTCGGCGGTGGGGGGGCAACCAGGCACATAGACGTCAACAGGA
ACAATTCTGTCGCAGCCTCTAACCACCGAGTACGAGTAGTGGTAGTAACCACCACCGTTGGCGCA
CGAGCCCATGGAGATGACCCATCTGGGCTCGGGCATCTGGTCGTACACCTGTCTCAAAGCCGGGG
CCATCTTGTTGGTGACGGTACCAGCAACAATCATAATATCAGACTGACGGGGCGAAGCTCTGAAA
ATAATCCCCAATCTGTCCTGGTCGTATCTGGGAGTCGACACATGC
Found at i:122239 original size:22 final size:21
Alignment explanation
Indices: 122204--122276 Score: 85
Period size: 22 Copynumber: 3.3 Consensus size: 21
122194 GGTTTCTCTG
*
122204 GTTTCACTGTTTCTCTGCTTCTC
1 GTTTCTCTGTTTCTCT--TTCTC
*
122227 -TTTCTCTGCTTCTCTTTCTC
1 GTTTCTCTGTTTCTCTTTCTC
122247 TGTTTCTCTGTTTCTCTTTCTC
1 -GTTTCTCTGTTTCTCTTTCTC
122269 TGTTTCTC
1 -GTTTCTC
122277 ATAATTACTC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
20 5 0.11
22 40 0.89
ACGTcount: A:0.01, C:0.30, G:0.10, T:0.59
Consensus pattern (21 bp):
GTTTCTCTGTTTCTCTTTCTC
Left flanking sequence: Indices 121704 -- 122203
AAACGGGGGCCGACTTACGGGCAGCCTTGGAGGCCAACTGCTTTCTGGGGGCCTTACCACCGGTG
GACTTTCTCGCGGTTTGCTTCGTACGAGCCATTTGTAATAAAGTGTGTTAGGTGGAAAAAATTTA
CGTCGATGCGGATTAAGGGTTATATATGAGGAAAAGGGATGACCCGAAAAAGTGAGGTGAGAAGC
GCCACTGCCACGTCCGCCCGGCAATGCGAAAAAATCTAGCACTACTGATTTCCGCCACTTAACTA
TGGGCAATTCTTTGAGCCAGTGCGCACAAGTCGTGCGCGCACCAAACAGGGGATCTCACCTCCCT
TTCTGTTAAATGACTGCATGAAATGCAGGACTTGCCGAACCTGTGTGGGGCCGCTAACTAGTGTG
GGTGGGGAAGGGTGTCAAGGTGTCGAAACAAAAATGACGCTACTGGCGAATCAGACTCGCATCGG
TATTCAGTTTCAATTTCGAATTGTATAGTTTCTCTGGTTTCTCTG
Right flanking sequence: Indices 122277 -- 122776
ATAATTACTCCGGTCTATATCTTTTATGTTCTATTGGATACATAATGCATTTGTGCTCGAGGTCG
AGCGATGAACGTCGACGCTTAGTTTCTCCACCACATTCTCGTGATCTTGTGCTTCATCATCTTCT
TCTGCAACTGGAAAACACCGTACATCAAGGCCTCGGCGGTGGGGGGGCAACCAGGCACATAGACG
TCAACAGGAACAATTCTGTCGCAGCCTCTAACCACCGAGTACGAGTAGTGGTAGTAACCACCACC
GTTGGCGCACGAGCCCATGGAGATGACCCATCTGGGCTCGGGCATCTGGTCGTACACCTGTCTCA
AAGCCGGGGCCATCTTGTTGGTGACGGTACCAGCAACAATCATAATATCAGACTGACGGGGCGAA
GCTCTGAAAATAATCCCCAATCTGTCCTGGTCGTATCTGGGAGTCGACACATGCATCATCTCGAC
GGCACAGCACGCCAAACCAAAAGTGACGGGCCAGAACGACGACTT
Found at i:122274 original size:8 final size:8
Alignment explanation
Indices: 122186--122276 Score: 95
Period size: 8 Copynumber: 11.9 Consensus size: 8
122176 GAATTGTATA
122186 GTTTCTCT
1 GTTTCTCT
122194 GGTTTCTCT
1 -GTTTCTCT
*
122203 GGTTTCACT
1 -GTTTCTCT
122212 GTTTCTCT
1 GTTTCTCT
*
122220 GCTTCTC-
1 GTTTCTCT
122227 -TTTCTCT
1 GTTTCTCT
*
122234 GCTTCTC-
1 GTTTCTCT
122241 -TTTCTCT
1 GTTTCTCT
122248 GTTTCTCT
1 GTTTCTCT
122256 GTTTCTC-
1 GTTTCTCT
122263 -TTTCTCT
1 GTTTCTCT
122270 GTTTCTC
1 GTTTCTC
122277 ATAATTACTC
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
6 16 0.23
8 38 0.54
9 16 0.23
ACGTcount: A:0.01, C:0.29, G:0.12, T:0.58
Consensus pattern (8 bp):
GTTTCTCT
Left flanking sequence: Indices 121686 -- 122185
GCTTCTTGACACCACCAGAAACGGGGGCCGACTTACGGGCAGCCTTGGAGGCCAACTGCTTTCTG
GGGGCCTTACCACCGGTGGACTTTCTCGCGGTTTGCTTCGTACGAGCCATTTGTAATAAAGTGTG
TTAGGTGGAAAAAATTTACGTCGATGCGGATTAAGGGTTATATATGAGGAAAAGGGATGACCCGA
AAAAGTGAGGTGAGAAGCGCCACTGCCACGTCCGCCCGGCAATGCGAAAAAATCTAGCACTACTG
ATTTCCGCCACTTAACTATGGGCAATTCTTTGAGCCAGTGCGCACAAGTCGTGCGCGCACCAAAC
AGGGGATCTCACCTCCCTTTCTGTTAAATGACTGCATGAAATGCAGGACTTGCCGAACCTGTGTG
GGGCCGCTAACTAGTGTGGGTGGGGAAGGGTGTCAAGGTGTCGAAACAAAAATGACGCTACTGGC
GAATCAGACTCGCATCGGTATTCAGTTTCAATTTCGAATTGTATA
Right flanking sequence: Indices 122277 -- 122776
ATAATTACTCCGGTCTATATCTTTTATGTTCTATTGGATACATAATGCATTTGTGCTCGAGGTCG
AGCGATGAACGTCGACGCTTAGTTTCTCCACCACATTCTCGTGATCTTGTGCTTCATCATCTTCT
TCTGCAACTGGAAAACACCGTACATCAAGGCCTCGGCGGTGGGGGGGCAACCAGGCACATAGACG
TCAACAGGAACAATTCTGTCGCAGCCTCTAACCACCGAGTACGAGTAGTGGTAGTAACCACCACC
GTTGGCGCACGAGCCCATGGAGATGACCCATCTGGGCTCGGGCATCTGGTCGTACACCTGTCTCA
AAGCCGGGGCCATCTTGTTGGTGACGGTACCAGCAACAATCATAATATCAGACTGACGGGGCGAA
GCTCTGAAAATAATCCCCAATCTGTCCTGGTCGTATCTGGGAGTCGACACATGCATCATCTCGAC
GGCACAGCACGCCAAACCAAAAGTGACGGGCCAGAACGACGACTT
Found at i:122276 original size:14 final size:14
Alignment explanation
Indices: 122213--122255 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
122203 GGTTTCACTG
122213 TTTCTCTGCTTCTC
1 TTTCTCTGCTTCTC
122227 TTTCTCTGCTTCTC
1 TTTCTCTGCTTCTC
*
122241 TTTCTCTGTTTCTC
1 TTTCTCTGCTTCTC
122255 T
1 T
122256 GTTTCTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.00, C:0.33, G:0.07, T:0.60
Consensus pattern (14 bp):
TTTCTCTGCTTCTC
Left flanking sequence: Indices 121713 -- 122212
CCGACTTACGGGCAGCCTTGGAGGCCAACTGCTTTCTGGGGGCCTTACCACCGGTGGACTTTCTC
GCGGTTTGCTTCGTACGAGCCATTTGTAATAAAGTGTGTTAGGTGGAAAAAATTTACGTCGATGC
GGATTAAGGGTTATATATGAGGAAAAGGGATGACCCGAAAAAGTGAGGTGAGAAGCGCCACTGCC
ACGTCCGCCCGGCAATGCGAAAAAATCTAGCACTACTGATTTCCGCCACTTAACTATGGGCAATT
CTTTGAGCCAGTGCGCACAAGTCGTGCGCGCACCAAACAGGGGATCTCACCTCCCTTTCTGTTAA
ATGACTGCATGAAATGCAGGACTTGCCGAACCTGTGTGGGGCCGCTAACTAGTGTGGGTGGGGAA
GGGTGTCAAGGTGTCGAAACAAAAATGACGCTACTGGCGAATCAGACTCGCATCGGTATTCAGTT
TCAATTTCGAATTGTATAGTTTCTCTGGTTTCTCTGGTTTCACTG
Right flanking sequence: Indices 122256 -- 122755
GTTTCTCTTTCTCTGTTTCTCATAATTACTCCGGTCTATATCTTTTATGTTCTATTGGATACATA
ATGCATTTGTGCTCGAGGTCGAGCGATGAACGTCGACGCTTAGTTTCTCCACCACATTCTCGTGA
TCTTGTGCTTCATCATCTTCTTCTGCAACTGGAAAACACCGTACATCAAGGCCTCGGCGGTGGGG
GGGCAACCAGGCACATAGACGTCAACAGGAACAATTCTGTCGCAGCCTCTAACCACCGAGTACGA
GTAGTGGTAGTAACCACCACCGTTGGCGCACGAGCCCATGGAGATGACCCATCTGGGCTCGGGCA
TCTGGTCGTACACCTGTCTCAAAGCCGGGGCCATCTTGTTGGTGACGGTACCAGCAACAATCATA
ATATCAGACTGACGGGGCGAAGCTCTGAAAATAATCCCCAATCTGTCCTGGTCGTATCTGGGAGT
CGACACATGCATCATCTCGACGGCACAGCACGCCAAACCAAAAGT
Found at i:124441 original size:20 final size:20
Alignment explanation
Indices: 124416--124475 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
124406 GAATGAGGCC
124416 TGTTAGAATGTTAGACAGAA
1 TGTTAGAATGTTAGACAGAA
124436 TGTTAGAATGTTAGACAG-A
1 TGTTAGAATGTTAGACAGAA
124455 -GTTAGACA-GTTAGACAGAA
1 TGTTAGA-ATGTTAGACAGAA
124474 TG
1 TG
124476 ATTACGCAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
18 15 0.41
19 3 0.08
20 19 0.51
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (20 bp):
TGTTAGAATGTTAGACAGAA
Left flanking sequence: Indices 123916 -- 124415
TGGGAGATGGCGGTTCGGACCACCCGGGGCGAGACCGGGGTGGATGCGGTGCTGATTTGCAGTGT
GCTCAAGGGCAAGGGTGCTCCCCAGATTGTGTTGGTGCGCCAGTTCCGTCCGCCGGCCAATGCGT
GTATGATTGAGATGCCGGCCGGGTTGGTGGACCCCAAGGAGCCTGTGGAGAAGACGGCGGTGCGC
GAGCTCTTGGAGGAGACCGGGTACCACGGCACGTGCACCCGGACCACCCCTGTGATGTACAGCGA
CCCTGGGTTGAGCAATGCCAACATGGTGATGGCGTATGTGGATGTGGACCTTACCGACCCGCGCA
ACGAGGCTCCGCAGCAGCAATTGGACGACGGCGAGTACATCGAGGTGTTTACGGTGCCGGTGGCG
CTGTTGCGCCAGGAGTTGGACCAGTTGAAGGAGCAGGGGGACGAGATCGACTCGAGATTGTACCA
CTTTGCCGCGGGGATCGAGTTTGCCGGGCAGATGTGAATGAGGCC
Right flanking sequence: Indices 124476 -- 124975
ATTACGCAATGAATGATACGCAATGAATGATACGCAATGAATGATTACGAATGATGATAAGAATG
GATAGCTTGGTGCACATGTATAATAAGCCATCTGGAGAAAGCAAAACATACAGGAATGAAACAAG
CAGAACACAAGGGCAAGCCGAAACGGCACCGATGAACCGTACCATCACCACTACATCGCCACCCC
ACCAAACCACCACACACCGTATTGGCACTAGATCGTCAGACCCTTTTCTCTACCATCGCACTAAG
CACCTCACTATCACAGTGCGAATCAGCTCACGCAGGCCACTACCCACCACCACCACCCCATAAAA
CCACAACCAACACCACTACAAACACTACACTCTACCCACACCCTCTACCATACACACCCATTTTT
CTTTCCCTCGCATCCACCACACCTCGCCCGTTCGGTGCATGTGCGCAAACCCGCATACATTCGCC
GCCCCGCAAAAAGCTCCGCCATGTCTACGTGCTGCTTCTGTCTCG
Found at i:124497 original size:14 final size:14
Alignment explanation
Indices: 124471--124534 Score: 96
Period size: 14 Copynumber: 4.6 Consensus size: 14
124461 CAGTTAGACA
124471 GAATGATTACGCAAT
1 GAATGA-TACGCAAT
124486 GAATGATACGCAAT
1 GAATGATACGCAAT
124500 GAATGATACGCAAT
1 GAATGATACGCAAT
124514 GAATGATTACG-AAT
1 GAATGA-TACGCAAT
124528 G-ATGATA
1 GAATGATA
124535 AGAATGGATA
Statistics
Matches: 48, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
12 2 0.04
13 4 0.08
14 32 0.67
15 10 0.21
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (14 bp):
GAATGATACGCAAT
Left flanking sequence: Indices 123971 -- 124470
TTTGCAGTGTGCTCAAGGGCAAGGGTGCTCCCCAGATTGTGTTGGTGCGCCAGTTCCGTCCGCCG
GCCAATGCGTGTATGATTGAGATGCCGGCCGGGTTGGTGGACCCCAAGGAGCCTGTGGAGAAGAC
GGCGGTGCGCGAGCTCTTGGAGGAGACCGGGTACCACGGCACGTGCACCCGGACCACCCCTGTGA
TGTACAGCGACCCTGGGTTGAGCAATGCCAACATGGTGATGGCGTATGTGGATGTGGACCTTACC
GACCCGCGCAACGAGGCTCCGCAGCAGCAATTGGACGACGGCGAGTACATCGAGGTGTTTACGGT
GCCGGTGGCGCTGTTGCGCCAGGAGTTGGACCAGTTGAAGGAGCAGGGGGACGAGATCGACTCGA
GATTGTACCACTTTGCCGCGGGGATCGAGTTTGCCGGGCAGATGTGAATGAGGCCTGTTAGAATG
TTAGACAGAATGTTAGAATGTTAGACAGAGTTAGACAGTTAGACA
Right flanking sequence: Indices 124535 -- 125034
AGAATGGATAGCTTGGTGCACATGTATAATAAGCCATCTGGAGAAAGCAAAACATACAGGAATGA
AACAAGCAGAACACAAGGGCAAGCCGAAACGGCACCGATGAACCGTACCATCACCACTACATCGC
CACCCCACCAAACCACCACACACCGTATTGGCACTAGATCGTCAGACCCTTTTCTCTACCATCGC
ACTAAGCACCTCACTATCACAGTGCGAATCAGCTCACGCAGGCCACTACCCACCACCACCACCCC
ATAAAACCACAACCAACACCACTACAAACACTACACTCTACCCACACCCTCTACCATACACACCC
ATTTTTCTTTCCCTCGCATCCACCACACCTCGCCCGTTCGGTGCATGTGCGCAAACCCGCATACA
TTCGCCGCCCCGCAAAAAGCTCCGCCATGTCTACGTGCTGCTTCTGTCTCGGAGGCGACACAGAG
ATCCCAGCTTTCGGCTCGATCAAGGATGCGGAGGACTTGATCACC
Found at i:126962 original size:18 final size:18
Alignment explanation
Indices: 126939--127008 Score: 67
Period size: 18 Copynumber: 4.1 Consensus size: 18
126929 CTGCTCGGTG
*
126939 GGCTGAGGTTGGG-TGGGA
1 GGCTGAGGCTGGGCT-GGA
126957 GGCTGAGGCTGGGCTGGA
1 GGCTGAGGCTGGGCTGGA
*
126975 GGCT---GCTGGGCTGGT
1 GGCTGAGGCTGGGCTGGA
* *
126990 GGCTGAGACTGGGCCGGA
1 GGCTGAGGCTGGGCTGGA
127008 G
1 G
127009 CAGGAGCAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
15 14 0.33
18 28 0.65
19 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.56, T:0.19
Consensus pattern (18 bp):
GGCTGAGGCTGGGCTGGA
Left flanking sequence: Indices 126439 -- 126938
TACGTGAGCTCCAAGGTGGGCGCCGCGGTGTTCGAGGTGCTCGTGCGGTGGATGGGCCCGCGCGT
GGCCCACAACAAGCTCGGGTTGCTCGCCAACATCATCGGGTTGTTTGCGGTGGTCGCCGCCAAGG
ACGTGGTGGCGCTCGTGGTCAACTGGCACAAGGCCAACCAGTTGCTGAACTTGGCGGTGGTGACC
CGCGACCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACGACCTTGTCGGGTTTCCCGGGCG
GTTTGTCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAACACTATAAAAATCACTCGTCGTC
GTAGTTTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACGGGTTCCTGCTTGGCGGGCTCGT
CGTCGTCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGTGCCGCCGTTGGCCACGGGGGCT
GCGGGCTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGGTG
Right flanking sequence: Indices 127009 -- 127508
CAGGAGCAGGAGCAGGAGCAGCAGGAGCCGCAGCGGCAGGAGTACCTGAAACACCAGCACCAGAA
GCACCACCAGCGGGAACACCAGGAGCACCACCAGTAGAAGCACCAGGAGCACCGGGAGTACCAGA
ACCAGCAGCACCAGCACCACCAGGAGCACCAGAACCAGACGCCACACCCGCTGCACCTGCCACAC
CCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACGGGCGACGCCTCCTGCGCCGCAGCCGCG
TTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGGAGACGCCTGCACCGACGGCGCGGGCTT
CTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGCGCTTGGGCGCGGGCGGCGCCGGCGGGA
GCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCGGGCAACTTGTGCTGCTCGGGCTTGGCG
GGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGGCAACTGG
Found at i:126984 original size:15 final size:15
Alignment explanation
Indices: 126964--126994 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
126954 GGAGGCTGAG
126964 GCTGGGCTGGAGGCT
1 GCTGGGCTGGAGGCT
*
126979 GCTGGGCTGGTGGCT
1 GCTGGGCTGGAGGCT
126994 G
1 G
126995 AGACTGGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.03, C:0.19, G:0.55, T:0.23
Consensus pattern (15 bp):
GCTGGGCTGGAGGCT
Left flanking sequence: Indices 126464 -- 126963
CGGTGTTCGAGGTGCTCGTGCGGTGGATGGGCCCGCGCGTGGCCCACAACAAGCTCGGGTTGCTC
GCCAACATCATCGGGTTGTTTGCGGTGGTCGCCGCCAAGGACGTGGTGGCGCTCGTGGTCAACTG
GCACAAGGCCAACCAGTTGCTGAACTTGGCGGTGGTGACCCGCGACCGGGTGCCCGACGCGCCCG
CCACCGTGGCCGACCACGACCTTGTCGGGTTTCCCGGGCGGTTTGTCAATTAGGAAATAGTACAA
ATTGTTACAAAGCTAAACACTATAAAAATCACTCGTCGTCGTAGTTTTCGTCCTCGTCCACCTTG
CGCATGGGCGGCTCGACGGGTTCCTGCTTGGCGGGCTCGTCGTCGTCCTCGGGCTTGGCCAGCGC
GGCCTTGGCGTCCGGGGTGCCGCCGTTGGCCACGGGGGCTGCGGGCTGGACGGGCGGGGTGGGCG
ACACCGACGGCTGCTCGGTGGGCTGAGGTTGGGTGGGAGGCTGAG
Right flanking sequence: Indices 126995 -- 127494
AGACTGGGCCGGAGCAGGAGCAGGAGCAGGAGCAGCAGGAGCCGCAGCGGCAGGAGTACCTGAAA
CACCAGCACCAGAAGCACCACCAGCGGGAACACCAGGAGCACCACCAGTAGAAGCACCAGGAGCA
CCGGGAGTACCAGAACCAGCAGCACCAGCACCACCAGGAGCACCAGAACCAGACGCCACACCCGC
TGCACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACGGGCGACGCCTCCT
GCGCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGGAGACGCCTGCACC
GACGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGCGCTTGGGCGCGGG
CGGCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCGGGCAACTTGTGCT
GCTCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACG
Found at i:127016 original size:6 final size:6
Alignment explanation
Indices: 127005--127029 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
126995 AGACTGGGCC
127005 GGAGCA GGAGCA GGAGCA GGAGCA G
1 GGAGCA GGAGCA GGAGCA GGAGCA G
127030 CAGGAGCCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.52, T:0.00
Consensus pattern (6 bp):
GGAGCA
Left flanking sequence: Indices 126505 -- 127004
GCCCACAACAAGCTCGGGTTGCTCGCCAACATCATCGGGTTGTTTGCGGTGGTCGCCGCCAAGGA
CGTGGTGGCGCTCGTGGTCAACTGGCACAAGGCCAACCAGTTGCTGAACTTGGCGGTGGTGACCC
GCGACCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACGACCTTGTCGGGTTTCCCGGGCGG
TTTGTCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAACACTATAAAAATCACTCGTCGTCG
TAGTTTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACGGGTTCCTGCTTGGCGGGCTCGTC
GTCGTCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGTGCCGCCGTTGGCCACGGGGGCTG
CGGGCTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGGTGGGCTGAGGTTGGGTGGGAGGC
TGAGGCTGGGCTGGAGGCTGCTGGGCTGGTGGCTGAGACTGGGCC
Right flanking sequence: Indices 127030 -- 127529
CAGGAGCCGCAGCGGCAGGAGTACCTGAAACACCAGCACCAGAAGCACCACCAGCGGGAACACCA
GGAGCACCACCAGTAGAAGCACCAGGAGCACCGGGAGTACCAGAACCAGCAGCACCAGCACCACC
AGGAGCACCAGAACCAGACGCCACACCCGCTGCACCTGCCACACCCGCGTTCTCACCCGCGGGCG
ACGGCTGCTTGGGCACGGGCGACGCCTCCTGCGCCGCAGCCGCGTTCATGAGCGAGCTCAACGAG
TTGGTGGGCGGCGCCGGAGACGCCTGCACCGACGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGA
CTTGTCCTCCAAGTCGCGCTTGGGCGCGGGCGGCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCT
CGGGCTTCAGGAGCTCGGGCAACTTGTGCTGCTCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGG
TGGGCCAACGGCGGCGGCAACTGGCCCAGCTGCTGCGGCTGCGGG
Found at i:127033 original size:15 final size:15
Alignment explanation
Indices: 127007--127050 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
126997 ACTGGGCCGG
*
127007 AGCAGGAGCAGGAGC
1 AGCAGCAGCAGGAGC
*
127022 AGGAGCAGCAGGAGC
1 AGCAGCAGCAGGAGC
* *
127037 CGCAGCGGCAGGAG
1 AGCAGCAGCAGGAG
127051 TACCTGAAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.48, T:0.00
Consensus pattern (15 bp):
AGCAGCAGCAGGAGC
Left flanking sequence: Indices 126507 -- 127006
CCACAACAAGCTCGGGTTGCTCGCCAACATCATCGGGTTGTTTGCGGTGGTCGCCGCCAAGGACG
TGGTGGCGCTCGTGGTCAACTGGCACAAGGCCAACCAGTTGCTGAACTTGGCGGTGGTGACCCGC
GACCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACGACCTTGTCGGGTTTCCCGGGCGGTT
TGTCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAACACTATAAAAATCACTCGTCGTCGTA
GTTTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACGGGTTCCTGCTTGGCGGGCTCGTCGT
CGTCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGTGCCGCCGTTGGCCACGGGGGCTGCG
GGCTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGGTGGGCTGAGGTTGGGTGGGAGGCTG
AGGCTGGGCTGGAGGCTGCTGGGCTGGTGGCTGAGACTGGGCCGG
Right flanking sequence: Indices 127051 -- 127550
TACCTGAAACACCAGCACCAGAAGCACCACCAGCGGGAACACCAGGAGCACCACCAGTAGAAGCA
CCAGGAGCACCGGGAGTACCAGAACCAGCAGCACCAGCACCACCAGGAGCACCAGAACCAGACGC
CACACCCGCTGCACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACGGGCG
ACGCCTCCTGCGCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGGAGAC
GCCTGCACCGACGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGCGCTT
GGGCGCGGGCGGCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCGGGCA
ACTTGTGCTGCTCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGGCAAC
TGGCCCAGCTGCTGCGGCTGCGGGAGGCCGTGGTCCTGGTGGTGG
Found at i:127083 original size:12 final size:12
Alignment explanation
Indices: 127066--127126 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 12
127056 GAAACACCAG
*
127066 CACCAGAAGCAC
1 CACCAGGAGCAC
* *
127078 CACCAGCG-GGAA
1 CACCAG-GAGCAC
127090 CACCAGGAGCAC
1 CACCAGGAGCAC
* * *
127102 CACCAGTAGAAG
1 CACCAGGAGCAC
127114 CACCAGGAGCAC
1 CACCAGGAGCAC
127126 C
1 C
127127 GGGAGTACCA
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
11 1 0.03
12 35 0.97
ACGTcount: A:0.36, C:0.38, G:0.25, T:0.02
Consensus pattern (12 bp):
CACCAGGAGCAC
Left flanking sequence: Indices 126566 -- 127065
AGGACGTGGTGGCGCTCGTGGTCAACTGGCACAAGGCCAACCAGTTGCTGAACTTGGCGGTGGTG
ACCCGCGACCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACGACCTTGTCGGGTTTCCCGG
GCGGTTTGTCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAACACTATAAAAATCACTCGTC
GTCGTAGTTTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACGGGTTCCTGCTTGGCGGGCT
CGTCGTCGTCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGTGCCGCCGTTGGCCACGGGG
GCTGCGGGCTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGGTGGGCTGAGGTTGGGTGGG
AGGCTGAGGCTGGGCTGGAGGCTGCTGGGCTGGTGGCTGAGACTGGGCCGGAGCAGGAGCAGGAG
CAGGAGCAGCAGGAGCCGCAGCGGCAGGAGTACCTGAAACACCAG
Right flanking sequence: Indices 127127 -- 127626
GGGAGTACCAGAACCAGCAGCACCAGCACCACCAGGAGCACCAGAACCAGACGCCACACCCGCTG
CACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACGGGCGACGCCTCCTGC
GCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGGAGACGCCTGCACCGA
CGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGCGCTTGGGCGCGGGCG
GCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCGGGCAACTTGTGCTGC
TCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGGCAACTGGCCCAGCTG
CTGCGGCTGCGGGAGGCCGTGGTCCTGGTGGTGGCCGTGCGGCGGCTGGTGCGGCGGCTGCTGCG
GCTGCGGCGGTTGCTGGTGCTGCGGTGGCTGTTGTTGCGGGTGCG
Found at i:127100 original size:24 final size:24
Alignment explanation
Indices: 127064--127126 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
127054 CTGAAACACC
* *
127064 AGCACCAGAAGCACCACCAGCGGGA
1 AGCACCAGGAGCACCACCAG-GAGA
*
127089 A-CACCAGGAGCACCACCAGTAGA
1 AGCACCAGGAGCACCACCAGGAGA
127112 AGCACCAGGAGCACC
1 AGCACCAGGAGCACC
127127 GGGAGTACCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 3 0.09
24 30 0.88
25 1 0.03
ACGTcount: A:0.37, C:0.37, G:0.25, T:0.02
Consensus pattern (24 bp):
AGCACCAGGAGCACCACCAGGAGA
Left flanking sequence: Indices 126564 -- 127063
CAAGGACGTGGTGGCGCTCGTGGTCAACTGGCACAAGGCCAACCAGTTGCTGAACTTGGCGGTGG
TGACCCGCGACCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACGACCTTGTCGGGTTTCCC
GGGCGGTTTGTCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAACACTATAAAAATCACTCG
TCGTCGTAGTTTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACGGGTTCCTGCTTGGCGGG
CTCGTCGTCGTCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGTGCCGCCGTTGGCCACGG
GGGCTGCGGGCTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGGTGGGCTGAGGTTGGGTG
GGAGGCTGAGGCTGGGCTGGAGGCTGCTGGGCTGGTGGCTGAGACTGGGCCGGAGCAGGAGCAGG
AGCAGGAGCAGCAGGAGCCGCAGCGGCAGGAGTACCTGAAACACC
Right flanking sequence: Indices 127127 -- 127626
GGGAGTACCAGAACCAGCAGCACCAGCACCACCAGGAGCACCAGAACCAGACGCCACACCCGCTG
CACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACGGGCGACGCCTCCTGC
GCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGGAGACGCCTGCACCGA
CGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGCGCTTGGGCGCGGGCG
GCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCGGGCAACTTGTGCTGC
TCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGGCAACTGGCCCAGCTG
CTGCGGCTGCGGGAGGCCGTGGTCCTGGTGGTGGCCGTGCGGCGGCTGGTGCGGCGGCTGCTGCG
GCTGCGGCGGTTGCTGGTGCTGCGGTGGCTGTTGTTGCGGGTGCG
Found at i:127126 original size:9 final size:9
Alignment explanation
Indices: 127112--127170 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 9
127102 CACCAGTAGA
127112 AGCACCAGG
1 AGCACCAGG
*
127121 AGCACCGGG
1 AGCACCAGG
*
127130 AGTACCA-G
1 AGCACCAGG
*
127138 A--ACCAGC
1 AGCACCAGG
*
127145 AGCACCAGC
1 AGCACCAGG
*
127154 ACCACCAGG
1 AGCACCAGG
127163 AGCACCAG
1 AGCACCAG
127171 AACCAGACGC
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
6 4 0.10
7 1 0.03
8 2 0.05
9 33 0.82
ACGTcount: A:0.34, C:0.37, G:0.27, T:0.02
Consensus pattern (9 bp):
AGCACCAGG
Left flanking sequence: Indices 126612 -- 127111
GCTGAACTTGGCGGTGGTGACCCGCGACCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACG
ACCTTGTCGGGTTTCCCGGGCGGTTTGTCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAAC
ACTATAAAAATCACTCGTCGTCGTAGTTTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACG
GGTTCCTGCTTGGCGGGCTCGTCGTCGTCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGT
GCCGCCGTTGGCCACGGGGGCTGCGGGCTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGG
TGGGCTGAGGTTGGGTGGGAGGCTGAGGCTGGGCTGGAGGCTGCTGGGCTGGTGGCTGAGACTGG
GCCGGAGCAGGAGCAGGAGCAGGAGCAGCAGGAGCCGCAGCGGCAGGAGTACCTGAAACACCAGC
ACCAGAAGCACCACCAGCGGGAACACCAGGAGCACCACCAGTAGA
Right flanking sequence: Indices 127171 -- 127670
AACCAGACGCCACACCCGCTGCACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTG
GGCACGGGCGACGCCTCCTGCGCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGG
CGCCGGAGACGCCTGCACCGACGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCA
AGTCGCGCTTGGGCGCGGGCGGCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGG
AGCTCGGGCAACTTGTGCTGCTCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGG
CGGCGGCAACTGGCCCAGCTGCTGCGGCTGCGGGAGGCCGTGGTCCTGGTGGTGGCCGTGCGGCG
GCTGGTGCGGCGGCTGCTGCGGCTGCGGCGGTTGCTGGTGCTGCGGTGGCTGTTGTTGCGGGTGC
GGTGGTTGTTGCAGCGGCTGCGGCAAGTGGCCCTGGTGCGGTGGA
Found at i:127166 original size:18 final size:18
Alignment explanation
Indices: 127139--127175 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
127129 GAGTACCAGA
*
127139 ACCAGCAGCACCAGCACC
1 ACCAGCAGCACCAGAACC
*
127157 ACCAGGAGCACCAGAACC
1 ACCAGCAGCACCAGAACC
127175 A
1 A
127176 GACGCCACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.43, G:0.19, T:0.00
Consensus pattern (18 bp):
ACCAGCAGCACCAGAACC
Left flanking sequence: Indices 126639 -- 127138
CCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACGACCTTGTCGGGTTTCCCGGGCGGTTTG
TCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAACACTATAAAAATCACTCGTCGTCGTAGT
TTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACGGGTTCCTGCTTGGCGGGCTCGTCGTCG
TCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGTGCCGCCGTTGGCCACGGGGGCTGCGGG
CTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGGTGGGCTGAGGTTGGGTGGGAGGCTGAG
GCTGGGCTGGAGGCTGCTGGGCTGGTGGCTGAGACTGGGCCGGAGCAGGAGCAGGAGCAGGAGCA
GCAGGAGCCGCAGCGGCAGGAGTACCTGAAACACCAGCACCAGAAGCACCACCAGCGGGAACACC
AGGAGCACCACCAGTAGAAGCACCAGGAGCACCGGGAGTACCAGA
Right flanking sequence: Indices 127176 -- 127675
GACGCCACACCCGCTGCACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCAC
GGGCGACGCCTCCTGCGCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCG
GAGACGCCTGCACCGACGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCG
CGCTTGGGCGCGGGCGGCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTC
GGGCAACTTGTGCTGCTCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCG
GCAACTGGCCCAGCTGCTGCGGCTGCGGGAGGCCGTGGTCCTGGTGGTGGCCGTGCGGCGGCTGG
TGCGGCGGCTGCTGCGGCTGCGGCGGTTGCTGGTGCTGCGGTGGCTGTTGTTGCGGGTGCGGTGG
TTGTTGCAGCGGCTGCGGCAAGTGGCCCTGGTGCGGTGGAGCCGC
Found at i:127170 original size:33 final size:33
Alignment explanation
Indices: 127112--127176 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
127102 CACCAGTAGA
* * * *
127112 AGCACCAGGAGCACCGGGAGTACCAGAACCAGC
1 AGCACCAGCACCACCAGGAGCACCAGAACCAGC
127145 AGCACCAGCACCACCAGGAGCACCAGAACCAG
1 AGCACCAGCACCACCAGGAGCACCAGAACCAG
127177 ACGCCACACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.35, C:0.37, G:0.26, T:0.02
Consensus pattern (33 bp):
AGCACCAGCACCACCAGGAGCACCAGAACCAGC
Left flanking sequence: Indices 126612 -- 127111
GCTGAACTTGGCGGTGGTGACCCGCGACCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACG
ACCTTGTCGGGTTTCCCGGGCGGTTTGTCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAAC
ACTATAAAAATCACTCGTCGTCGTAGTTTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACG
GGTTCCTGCTTGGCGGGCTCGTCGTCGTCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGT
GCCGCCGTTGGCCACGGGGGCTGCGGGCTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGG
TGGGCTGAGGTTGGGTGGGAGGCTGAGGCTGGGCTGGAGGCTGCTGGGCTGGTGGCTGAGACTGG
GCCGGAGCAGGAGCAGGAGCAGGAGCAGCAGGAGCCGCAGCGGCAGGAGTACCTGAAACACCAGC
ACCAGAAGCACCACCAGCGGGAACACCAGGAGCACCACCAGTAGA
Right flanking sequence: Indices 127177 -- 127676
ACGCCACACCCGCTGCACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACG
GGCGACGCCTCCTGCGCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGG
AGACGCCTGCACCGACGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGC
GCTTGGGCGCGGGCGGCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCG
GGCAACTTGTGCTGCTCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGG
CAACTGGCCCAGCTGCTGCGGCTGCGGGAGGCCGTGGTCCTGGTGGTGGCCGTGCGGCGGCTGGT
GCGGCGGCTGCTGCGGCTGCGGCGGTTGCTGGTGCTGCGGTGGCTGTTGTTGCGGGTGCGGTGGT
TGTTGCAGCGGCTGCGGCAAGTGGCCCTGGTGCGGTGGAGCCGCG
Found at i:127175 original size:15 final size:15
Alignment explanation
Indices: 127128--127176 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
127118 AGGAGCACCG
*
127128 GGAGTACCAGAACCA
1 GGAGCACCAGAACCA
*
127143 GCAGCACCAGCACCACCA
1 GGAGCACCAG-A--ACCA
127161 GGAGCACCAGAACCA
1 GGAGCACCAGAACCA
127176 G
1 G
127177 ACGCCACACC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 13 0.46
16 1 0.04
17 1 0.04
18 13 0.46
ACGTcount: A:0.37, C:0.37, G:0.24, T:0.02
Consensus pattern (15 bp):
GGAGCACCAGAACCA
Left flanking sequence: Indices 126628 -- 127127
GTGACCCGCGACCGGGTGCCCGACGCGCCCGCCACCGTGGCCGACCACGACCTTGTCGGGTTTCC
CGGGCGGTTTGTCAATTAGGAAATAGTACAAATTGTTACAAAGCTAAACACTATAAAAATCACTC
GTCGTCGTAGTTTTCGTCCTCGTCCACCTTGCGCATGGGCGGCTCGACGGGTTCCTGCTTGGCGG
GCTCGTCGTCGTCCTCGGGCTTGGCCAGCGCGGCCTTGGCGTCCGGGGTGCCGCCGTTGGCCACG
GGGGCTGCGGGCTGGACGGGCGGGGTGGGCGACACCGACGGCTGCTCGGTGGGCTGAGGTTGGGT
GGGAGGCTGAGGCTGGGCTGGAGGCTGCTGGGCTGGTGGCTGAGACTGGGCCGGAGCAGGAGCAG
GAGCAGGAGCAGCAGGAGCCGCAGCGGCAGGAGTACCTGAAACACCAGCACCAGAAGCACCACCA
GCGGGAACACCAGGAGCACCACCAGTAGAAGCACCAGGAGCACCG
Right flanking sequence: Indices 127177 -- 127676
ACGCCACACCCGCTGCACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACG
GGCGACGCCTCCTGCGCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGG
AGACGCCTGCACCGACGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGC
GCTTGGGCGCGGGCGGCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCG
GGCAACTTGTGCTGCTCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGG
CAACTGGCCCAGCTGCTGCGGCTGCGGGAGGCCGTGGTCCTGGTGGTGGCCGTGCGGCGGCTGGT
GCGGCGGCTGCTGCGGCTGCGGCGGTTGCTGGTGCTGCGGTGGCTGTTGTTGCGGGTGCGGTGGT
TGTTGCAGCGGCTGCGGCAAGTGGCCCTGGTGCGGTGGAGCCGCG
Found at i:127568 original size:12 final size:12
Alignment explanation
Indices: 127553--127583 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
127543 GGTGGTGGCC
127553 GTGCGGCGGCTG
1 GTGCGGCGGCTG
127565 GTGCGGCGGCTG
1 GTGCGGCGGCTG
*
127577 CTGCGGC
1 GTGCGGC
127584 TGCGGCGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.29, G:0.55, T:0.16
Consensus pattern (12 bp):
GTGCGGCGGCTG
Left flanking sequence: Indices 127053 -- 127552
CCTGAAACACCAGCACCAGAAGCACCACCAGCGGGAACACCAGGAGCACCACCAGTAGAAGCACC
AGGAGCACCGGGAGTACCAGAACCAGCAGCACCAGCACCACCAGGAGCACCAGAACCAGACGCCA
CACCCGCTGCACCTGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACGGGCGAC
GCCTCCTGCGCCGCAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGGAGACGC
CTGCACCGACGGCGCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGCGCTTGG
GCGCGGGCGGCGCCGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCGGGCAAC
TTGTGCTGCTCGGGCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGGCAACTG
GCCCAGCTGCTGCGGCTGCGGGAGGCCGTGGTCCTGGTGGTGGCC
Right flanking sequence: Indices 127584 -- 128083
TGCGGCGGTTGCTGGTGCTGCGGTGGCTGTTGTTGCGGGTGCGGTGGTTGTTGCAGCGGCTGCGG
CAAGTGGCCCTGGTGCGGTGGAGCCGCGGCCGGTGCTGCTGGCGGCGGGAACTGCGGCGCGTGCT
GCGGTGCCATTGGTGGCTGCTGCTGCGGGCCGCCCTGCTGCTGGTTGCTCTCCAACACCATGCCC
TGGGGCAACTTGGGCTGCTGCAGCACAGGCGGCGGCTGCGGCGGGTGGGTGTTGCCCTCCTGCTG
GTACTTGATGAGCTGTTCCAACCGGGCCTTGATGTGGGGGTTGCCCGGGTCCAAGCGCTCGGCCT
GGGTGTAGGCGTCGAGCGCGTCGGAGATCTGGTTGTTGCAGGTTTCGTAGAGGGTGCCCAAGTCG
TACCACACCTCCGAGATGTAGGGGTTGAGCCGGATGGCGCGGGTGTAGGCGTCGAGCGCGTCGCG
GTACTGCAGGATCTGGTAGTACAACACGCCGATCGAGCACCAGAA
Found at i:127589 original size:18 final size:18
Alignment explanation
Indices: 127566--127612 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
127556 CGGCGGCTGG
127566 TGCGGCGGCTGCTGCG-GC
1 TGCGGCGGCTGCTG-GTGC
*
127584 TGCGGCGGTTGCTGGTGC
1 TGCGGCGGCTGCTGGTGC
*
127602 TGCGGTGGCTG
1 TGCGGCGGCTG
127613 TTGTTGCGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 1 0.04
18 24 0.96
ACGTcount: A:0.00, C:0.26, G:0.51, T:0.23
Consensus pattern (18 bp):
TGCGGCGGCTGCTGGTGC
Left flanking sequence: Indices 127066 -- 127565
CACCAGAAGCACCACCAGCGGGAACACCAGGAGCACCACCAGTAGAAGCACCAGGAGCACCGGGA
GTACCAGAACCAGCAGCACCAGCACCACCAGGAGCACCAGAACCAGACGCCACACCCGCTGCACC
TGCCACACCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACGGGCGACGCCTCCTGCGCCG
CAGCCGCGTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGGAGACGCCTGCACCGACGGC
GCGGGCTTCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGCGCTTGGGCGCGGGCGGCGC
CGGCGGGAGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCGGGCAACTTGTGCTGCTCGG
GCTTGGCGGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGGCAACTGGCCCAGCTGCTGC
GGCTGCGGGAGGCCGTGGTCCTGGTGGTGGCCGTGCGGCGGCTGG
Right flanking sequence: Indices 127613 -- 128112
TTGTTGCGGGTGCGGTGGTTGTTGCAGCGGCTGCGGCAAGTGGCCCTGGTGCGGTGGAGCCGCGG
CCGGTGCTGCTGGCGGCGGGAACTGCGGCGCGTGCTGCGGTGCCATTGGTGGCTGCTGCTGCGGG
CCGCCCTGCTGCTGGTTGCTCTCCAACACCATGCCCTGGGGCAACTTGGGCTGCTGCAGCACAGG
CGGCGGCTGCGGCGGGTGGGTGTTGCCCTCCTGCTGGTACTTGATGAGCTGTTCCAACCGGGCCT
TGATGTGGGGGTTGCCCGGGTCCAAGCGCTCGGCCTGGGTGTAGGCGTCGAGCGCGTCGGAGATC
TGGTTGTTGCAGGTTTCGTAGAGGGTGCCCAAGTCGTACCACACCTCCGAGATGTAGGGGTTGAG
CCGGATGGCGCGGGTGTAGGCGTCGAGCGCGTCGCGGTACTGCAGGATCTGGTAGTACAACACGC
CGATCGAGCACCAGAACGTCGGGTTGCGCAGGTCGCGGTTGACCG
Found at i:127597 original size:21 final size:21
Alignment explanation
Indices: 127573--127649 Score: 52
Period size: 21 Copynumber: 3.8 Consensus size: 21
127563 TGGTGCGGCG
127573 GCTGCTGCGGCTGCGGCGGTT
1 GCTGCTGCGGCTGCGGCGGTT
* * *
127594 GCTG--G-TGCTGCGGTGGCT
1 GCTGCTGCGGCTGCGGCGGTT
* * * *
127612 GTTGTTGCGGGTGCGGTGGTT
1 GCTGCTGCGGCTGCGGCGGTT
* *
127633 GTTGCAGCGGCTGCGGC
1 GCTGCTGCGGCTGCGGC
127650 AAGTGGCCCT
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
18 13 0.31
19 1 0.02
20 1 0.02
21 27 0.64
ACGTcount: A:0.01, C:0.22, G:0.49, T:0.27
Consensus pattern (21 bp):
GCTGCTGCGGCTGCGGCGGTT
Left flanking sequence: Indices 127073 -- 127572
AGCACCACCAGCGGGAACACCAGGAGCACCACCAGTAGAAGCACCAGGAGCACCGGGAGTACCAG
AACCAGCAGCACCAGCACCACCAGGAGCACCAGAACCAGACGCCACACCCGCTGCACCTGCCACA
CCCGCGTTCTCACCCGCGGGCGACGGCTGCTTGGGCACGGGCGACGCCTCCTGCGCCGCAGCCGC
GTTCATGAGCGAGCTCAACGAGTTGGTGGGCGGCGCCGGAGACGCCTGCACCGACGGCGCGGGCT
TCTTGGCCACCTTGTCGTCGGACTTGTCCTCCAAGTCGCGCTTGGGCGCGGGCGGCGCCGGCGGG
AGCGGCTGGGTGGGCGCCTGCTCGGGCTTCAGGAGCTCGGGCAACTTGTGCTGCTCGGGCTTGGC
GGGCGCGCCCTGGGCCATCTGGTGGGCCAACGGCGGCGGCAACTGGCCCAGCTGCTGCGGCTGCG
GGAGGCCGTGGTCCTGGTGGTGGCCGTGCGGCGGCTGGTGCGGCG
Right flanking sequence: Indices 127650 -- 128149
AAGTGGCCCTGGTGCGGTGGAGCCGCGGCCGGTGCTGCTGGCGGCGGGAACTGCGGCGCGTGCTG
CGGTGCCATTGGTGGCTGCTGCTGCGGGCCGCCCTGCTGCTGGTTGCTCTCCAACACCATGCCCT
GGGGCAACTTGGGCTGCTGCAGCACAGGCGGCGGCTGCGGCGGGTGGGTGTTGCCCTCCTGCTGG
TACTTGATGAGCTGTTCCAACCGGGCCTTGATGTGGGGGTTGCCCGGGTCCAAGCGCTCGGCCTG
GGTGTAGGCGTCGAGCGCGTCGGAGATCTGGTTGTTGCAGGTTTCGTAGAGGGTGCCCAAGTCGT
ACCACACCTCCGAGATGTAGGGGTTGAGCCGGATGGCGCGGGTGTAGGCGTCGAGCGCGTCGCGG
TACTGCAGGATCTGGTAGTACAACACGCCGATCGAGCACCAGAACGTCGGGTTGCGCAGGTCGCG
GTTGACCGCCTGCTGGAACGCCTCGTAGGCGGCGTTGAAGTCGCC
Found at i:140108 original size:33 final size:33
Alignment explanation
Indices: 140066--140131 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
140056 CAGCGTCGGA
*
140066 AGCCTTGGACTTGGCATCGGAAGCGCCGTCAGT
1 AGCCTTGGACTTGGCATCGGAAGCACCGTCAGT
*
140099 AGCCTTGGACTTGGCGTCGGAAGCACCGTCAGT
1 AGCCTTGGACTTGGCATCGGAAGCACCGTCAGT
140132 GGCACCAGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.21
Consensus pattern (33 bp):
AGCCTTGGACTTGGCATCGGAAGCACCGTCAGT
Left flanking sequence: Indices 139566 -- 140065
TTCTCACCTTTGTAGCAGCATCCTCTGGCAAAGTACACGCAAATCGGAACGGGGCCCGTGGCTCG
AGTATAGCCTTGGTCGCGTTTGATATCGACCCGAAACTTCAGAAGGGTATCGTCGTCGCCCGCAA
ACGCCCATTGCTTGTACCAGATATTGAACACGGCTCCGGTCTGCTGCGGTACGTCAACATCCTCT
AGTTCCGCCGGGTCCACCTGTAACCGGGCTGGTTTATCCATATCAAGGTGCCTTTGATTGTGAAT
GCAAAACAGGTGCGGCGCGATTTACGAGTAAGAGGTTGCAAAATCCCTCAAATTTCAAACATTGA
AAGAACAAAAACGTAACTGTATTAAGTAGTCTATACTGTTAAAGAATTACATAGCAAAGAGGTTG
ATGAGGAAGGTGACACCAACGAAGCCAACGACGGCAGTGCCCTTCTTCCAGTTGCCCTCAGGACC
AGCGGCGGCGTTAGCGGAAGACTCGCCAGACTTAGCAGCGTCGGA
Right flanking sequence: Indices 140132 -- 140631
GGCACCAGACTTGGCGTCAGAGGCAAAGTCGGTGGCGCCAGACTTGACGTGAGAAGCACCGTCGG
TGGCAGCCGACTTGACGTGAGAGGCACCGTTGGTAGCGACAGATCTGGCGTCAGAAGCAAAGTTG
GTGGCACCGGACTTGATGTGAGTAGCACCGTTGGTGGCAACAGAGACAACGTTGGAACCAATCTT
GGTACCAATGTTGACGGCGCCGGAGGTGAAGTCACCAAAGCCAGCTACCGCACCCGAAGTGACGT
CGCCGAAAGCACCCACGGCACCCGAGGTGATGTCGTCAACAATGTTTCTCTGAATAACCTGGTCG
TTGCCGAAGAAGTTGAACATGTTTGGAAGTATGACTCGGAGAATGCGTCGGTGAGCGTATTTATG
TATTCTCCTGAGCCGGCAGTGCGCGCAGCGCCGAATGACGGTGAGAAACGCGAATAACCATATTA
GGTACCGTTTCAAAAAATATTTTTCGGGTGGGGTAACTTCCTGTG
Found at i:140143 original size:33 final size:33
Alignment explanation
Indices: 140073--140210 Score: 111
Period size: 33 Copynumber: 4.2 Consensus size: 33
140063 GGAAGCCTTG
* * * **
140073 GACTTGGCATCGGAAGCGCCGTCAGTAGC-CTTG
1 GACTTGGCGTCGGAAGCACCGTCAGTGGCAC-CA
140106 GACTTGGCGTCGGAAGCACCGTCAGTGGCACCA
1 GACTTGGCGTCGGAAGCACCGTCAGTGGCACCA
* * ** * *
140139 GACTTGGCGTCAGAGGCAAAGTCGGTGGCGCCA
1 GACTTGGCGTCGGAAGCACCGTCAGTGGCACCA
* *
140172 GACTTGACGT-GAGAAGCACCGTCGGTGGCAGCC-
1 GACTTGGCGTCG-GAAGCACCGTCAGTGGCA-CCA
140205 GACTTG
1 GACTTG
140211 ACGTGAGAGG
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
33 82 0.96
34 3 0.04
ACGTcount: A:0.20, C:0.27, G:0.36, T:0.17
Consensus pattern (33 bp):
GACTTGGCGTCGGAAGCACCGTCAGTGGCACCA
Left flanking sequence: Indices 139573 -- 140072
CTTTGTAGCAGCATCCTCTGGCAAAGTACACGCAAATCGGAACGGGGCCCGTGGCTCGAGTATAG
CCTTGGTCGCGTTTGATATCGACCCGAAACTTCAGAAGGGTATCGTCGTCGCCCGCAAACGCCCA
TTGCTTGTACCAGATATTGAACACGGCTCCGGTCTGCTGCGGTACGTCAACATCCTCTAGTTCCG
CCGGGTCCACCTGTAACCGGGCTGGTTTATCCATATCAAGGTGCCTTTGATTGTGAATGCAAAAC
AGGTGCGGCGCGATTTACGAGTAAGAGGTTGCAAAATCCCTCAAATTTCAAACATTGAAAGAACA
AAAACGTAACTGTATTAAGTAGTCTATACTGTTAAAGAATTACATAGCAAAGAGGTTGATGAGGA
AGGTGACACCAACGAAGCCAACGACGGCAGTGCCCTTCTTCCAGTTGCCCTCAGGACCAGCGGCG
GCGTTAGCGGAAGACTCGCCAGACTTAGCAGCGTCGGAAGCCTTG
Right flanking sequence: Indices 140211 -- 140710
ACGTGAGAGGCACCGTTGGTAGCGACAGATCTGGCGTCAGAAGCAAAGTTGGTGGCACCGGACTT
GATGTGAGTAGCACCGTTGGTGGCAACAGAGACAACGTTGGAACCAATCTTGGTACCAATGTTGA
CGGCGCCGGAGGTGAAGTCACCAAAGCCAGCTACCGCACCCGAAGTGACGTCGCCGAAAGCACCC
ACGGCACCCGAGGTGATGTCGTCAACAATGTTTCTCTGAATAACCTGGTCGTTGCCGAAGAAGTT
GAACATGTTTGGAAGTATGACTCGGAGAATGCGTCGGTGAGCGTATTTATGTATTCTCCTGAGCC
GGCAGTGCGCGCAGCGCCGAATGACGGTGAGAAACGCGAATAACCATATTAGGTACCGTTTCAAA
AAATATTTTTCGGGTGGGGTAACTTCCTGTGACATATTTCCACGGAGTTCGGCACGGGGAAGCTG
TCAGGGTACCACTTGCAAAGCACGCTGTTAGTTTCTGTCTGTTGT
Found at i:140211 original size:33 final size:34
Alignment explanation
Indices: 140118--140300 Score: 144
Period size: 33 Copynumber: 5.5 Consensus size: 34
140108 CTTGGCGTCG
* * *
140118 GAAGCACCGTCAGTGGCA-CCAGACTTGGCGTCA
1 GAAGCACCGTCGGTGGCAGCCAGACTTGACGTGA
* **
140151 GAGGCAAAGTCGGTGGC-GCCAGACTTGACGTGA
1 GAAGCACCGTCGGTGGCAGCCAGACTTGACGTGA
140184 GAAGCACCGTCGGTGGCAGCC-GACTTGACGTGA
1 GAAGCACCGTCGGTGGCAGCCAGACTTGACGTGA
* * * * * *
140217 GAGGCACCGTTGGTAGC-GACAGA-TCTGGCGTCA
1 GAAGCACCGTCGGTGGCAGCCAGACT-TGACGTGA
** * * *
140250 GAAGCAAAGTTGGTGGCA-CCGGACTTGATGTGA
1 GAAGCACCGTCGGTGGCAGCCAGACTTGACGTGA
* *
140283 GTAGCACCGTTGGTGGCA
1 GAAGCACCGTCGGTGGCA
140301 ACAGAGACAA
Statistics
Matches: 117, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
32 3 0.03
33 110 0.94
34 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.36, T:0.17
Consensus pattern (34 bp):
GAAGCACCGTCGGTGGCAGCCAGACTTGACGTGA
Left flanking sequence: Indices 139618 -- 140117
GGCCCGTGGCTCGAGTATAGCCTTGGTCGCGTTTGATATCGACCCGAAACTTCAGAAGGGTATCG
TCGTCGCCCGCAAACGCCCATTGCTTGTACCAGATATTGAACACGGCTCCGGTCTGCTGCGGTAC
GTCAACATCCTCTAGTTCCGCCGGGTCCACCTGTAACCGGGCTGGTTTATCCATATCAAGGTGCC
TTTGATTGTGAATGCAAAACAGGTGCGGCGCGATTTACGAGTAAGAGGTTGCAAAATCCCTCAAA
TTTCAAACATTGAAAGAACAAAAACGTAACTGTATTAAGTAGTCTATACTGTTAAAGAATTACAT
AGCAAAGAGGTTGATGAGGAAGGTGACACCAACGAAGCCAACGACGGCAGTGCCCTTCTTCCAGT
TGCCCTCAGGACCAGCGGCGGCGTTAGCGGAAGACTCGCCAGACTTAGCAGCGTCGGAAGCCTTG
GACTTGGCATCGGAAGCGCCGTCAGTAGCCTTGGACTTGGCGTCG
Right flanking sequence: Indices 140301 -- 140800
ACAGAGACAACGTTGGAACCAATCTTGGTACCAATGTTGACGGCGCCGGAGGTGAAGTCACCAAA
GCCAGCTACCGCACCCGAAGTGACGTCGCCGAAAGCACCCACGGCACCCGAGGTGATGTCGTCAA
CAATGTTTCTCTGAATAACCTGGTCGTTGCCGAAGAAGTTGAACATGTTTGGAAGTATGACTCGG
AGAATGCGTCGGTGAGCGTATTTATGTATTCTCCTGAGCCGGCAGTGCGCGCAGCGCCGAATGAC
GGTGAGAAACGCGAATAACCATATTAGGTACCGTTTCAAAAAATATTTTTCGGGTGGGGTAACTT
CCTGTGACATATTTCCACGGAGTTCGGCACGGGGAAGCTGTCAGGGTACCACTTGCAAAGCACGC
TGTTAGTTTCTGTCTGTTGTTTGCATAATCATTTCTCCACCATAGAGCAATTTGCATTCACACGA
GTAAGTTCATGATTACGTCATAGCGGACCAGCAAGCTTTGAGCGC
Found at i:140225 original size:99 final size:99
Alignment explanation
Indices: 140121--140300 Score: 238
Period size: 99 Copynumber: 1.8 Consensus size: 99
140111 GGCGTCGGAA
* * *
140121 GCACCGTCAGTGGC-ACCAGA-CTTGGCGTCAGAGGCAAAGTCGGTGGCGCCAGACTTGACGTGA
1 GCACCGTCAGTAGCGA-CAGATC-TGGCGTCAGAAGCAAAGTCGGTGGCACCAGACTTGACGTGA
140184 GAAGCACCGTCGGTGGCAGCCGACTTGACGTGAGAG
64 GAAGCACCGTCGGTGGCAGCCGACTTGACGTGAGAG
** * * * *
140220 GCACCGTTGGTAGCGACAGATCTGGCGTCAGAAGCAAAGTTGGTGGCACCGGACTTGATGTGAGT
1 GCACCGTCAGTAGCGACAGATCTGGCGTCAGAAGCAAAGTCGGTGGCACCAGACTTGACGTGAGA
*
140285 AGCACCGTTGGTGGCA
66 AGCACCGTCGGTGGCA
140301 ACAGAGACAA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
99 67 0.97
100 2 0.03
ACGTcount: A:0.22, C:0.24, G:0.36, T:0.18
Consensus pattern (99 bp):
GCACCGTCAGTAGCGACAGATCTGGCGTCAGAAGCAAAGTCGGTGGCACCAGACTTGACGTGAGA
AGCACCGTCGGTGGCAGCCGACTTGACGTGAGAG
Left flanking sequence: Indices 139621 -- 140120
CCGTGGCTCGAGTATAGCCTTGGTCGCGTTTGATATCGACCCGAAACTTCAGAAGGGTATCGTCG
TCGCCCGCAAACGCCCATTGCTTGTACCAGATATTGAACACGGCTCCGGTCTGCTGCGGTACGTC
AACATCCTCTAGTTCCGCCGGGTCCACCTGTAACCGGGCTGGTTTATCCATATCAAGGTGCCTTT
GATTGTGAATGCAAAACAGGTGCGGCGCGATTTACGAGTAAGAGGTTGCAAAATCCCTCAAATTT
CAAACATTGAAAGAACAAAAACGTAACTGTATTAAGTAGTCTATACTGTTAAAGAATTACATAGC
AAAGAGGTTGATGAGGAAGGTGACACCAACGAAGCCAACGACGGCAGTGCCCTTCTTCCAGTTGC
CCTCAGGACCAGCGGCGGCGTTAGCGGAAGACTCGCCAGACTTAGCAGCGTCGGAAGCCTTGGAC
TTGGCATCGGAAGCGCCGTCAGTAGCCTTGGACTTGGCGTCGGAA
Right flanking sequence: Indices 140301 -- 140800
ACAGAGACAACGTTGGAACCAATCTTGGTACCAATGTTGACGGCGCCGGAGGTGAAGTCACCAAA
GCCAGCTACCGCACCCGAAGTGACGTCGCCGAAAGCACCCACGGCACCCGAGGTGATGTCGTCAA
CAATGTTTCTCTGAATAACCTGGTCGTTGCCGAAGAAGTTGAACATGTTTGGAAGTATGACTCGG
AGAATGCGTCGGTGAGCGTATTTATGTATTCTCCTGAGCCGGCAGTGCGCGCAGCGCCGAATGAC
GGTGAGAAACGCGAATAACCATATTAGGTACCGTTTCAAAAAATATTTTTCGGGTGGGGTAACTT
CCTGTGACATATTTCCACGGAGTTCGGCACGGGGAAGCTGTCAGGGTACCACTTGCAAAGCACGC
TGTTAGTTTCTGTCTGTTGTTTGCATAATCATTTCTCCACCATAGAGCAATTTGCATTCACACGA
GTAAGTTCATGATTACGTCATAGCGGACCAGCAAGCTTTGAGCGC
Found at i:140253 original size:66 final size:66
Alignment explanation
Indices: 140106--140305 Score: 199
Period size: 66 Copynumber: 3.0 Consensus size: 66
140096 AGTAGCCTTG
* * * * ** * *
140106 GACTTGGCGTCGGAAGCACCGTCAGTGGCACCAGACTTGGCGTCAGAGGCAAAGTCGGTGGCGCC
1 GACTTGGCGTCAGAAGCACCGTCGGTGGCACCAGACTTGACGTGAGAGGCACCGTTGGTGGCGAC
140171 A
66 A
* * *
140172 GACTTGACGTGAGAAGCACCGTCGGTGGCAGCC-GACTTGACGTGAGAGGCACCGTTGGTAGCGA
1 GACTTGGCGTCAGAAGCACCGTCGGTGGCA-CCAGACTTGACGTGAGAGGCACCGTTGGTGGCGA
140236 CA
65 CA
** * * * *
140238 GA-TCTGGCGTCAGAAGCAAAGTTGGTGGCACCGGACTTGATGTGAGTA-GCACCGTTGGTGGCA
1 GACT-TGGCGTCAGAAGCACCGTCGGTGGCACCAGACTTGACGTGAG-AGGCACCGTTGGTGGCG
140301 ACA
64 ACA
140304 GA
1 GA
140306 GACAACGTTG
Statistics
Matches: 111, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
65 3 0.03
66 105 0.95
67 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.36, T:0.17
Consensus pattern (66 bp):
GACTTGGCGTCAGAAGCACCGTCGGTGGCACCAGACTTGACGTGAGAGGCACCGTTGGTGGCGAC
A
Left flanking sequence: Indices 139606 -- 140105
AAATCGGAACGGGGCCCGTGGCTCGAGTATAGCCTTGGTCGCGTTTGATATCGACCCGAAACTTC
AGAAGGGTATCGTCGTCGCCCGCAAACGCCCATTGCTTGTACCAGATATTGAACACGGCTCCGGT
CTGCTGCGGTACGTCAACATCCTCTAGTTCCGCCGGGTCCACCTGTAACCGGGCTGGTTTATCCA
TATCAAGGTGCCTTTGATTGTGAATGCAAAACAGGTGCGGCGCGATTTACGAGTAAGAGGTTGCA
AAATCCCTCAAATTTCAAACATTGAAAGAACAAAAACGTAACTGTATTAAGTAGTCTATACTGTT
AAAGAATTACATAGCAAAGAGGTTGATGAGGAAGGTGACACCAACGAAGCCAACGACGGCAGTGC
CCTTCTTCCAGTTGCCCTCAGGACCAGCGGCGGCGTTAGCGGAAGACTCGCCAGACTTAGCAGCG
TCGGAAGCCTTGGACTTGGCATCGGAAGCGCCGTCAGTAGCCTTG
Right flanking sequence: Indices 140306 -- 140805
GACAACGTTGGAACCAATCTTGGTACCAATGTTGACGGCGCCGGAGGTGAAGTCACCAAAGCCAG
CTACCGCACCCGAAGTGACGTCGCCGAAAGCACCCACGGCACCCGAGGTGATGTCGTCAACAATG
TTTCTCTGAATAACCTGGTCGTTGCCGAAGAAGTTGAACATGTTTGGAAGTATGACTCGGAGAAT
GCGTCGGTGAGCGTATTTATGTATTCTCCTGAGCCGGCAGTGCGCGCAGCGCCGAATGACGGTGA
GAAACGCGAATAACCATATTAGGTACCGTTTCAAAAAATATTTTTCGGGTGGGGTAACTTCCTGT
GACATATTTCCACGGAGTTCGGCACGGGGAAGCTGTCAGGGTACCACTTGCAAAGCACGCTGTTA
GTTTCTGTCTGTTGTTTGCATAATCATTTCTCCACCATAGAGCAATTTGCATTCACACGAGTAAG
TTCATGATTACGTCATAGCGGACCAGCAAGCTTTGAGCGCGTTTA
Found at i:151890 original size:6 final size:6
Alignment explanation
Indices: 151879--151915 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
151869 AAGGCGGAGA
151879 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG A
1 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG A
151916 CAACGACGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (6 bp):
AAGAGG
Left flanking sequence: Indices 151379 -- 151878
TCAGGCTGTGCGTGATGACACCTTGGCACTCCTCTCCACTATCGACCAACTCAAGTCAAAAGCCA
GCTCTTTACGTGCTCTGCAATTAGCGTGCTTCGAGCTCATGTTCTCCATGGTATTGCTCCAGCTT
TACCTCTGTGACGAGGAAGCTGTCCAAGTCCTTGGTGAGCTTCGTGAATGTTTTGAGCAGACGTT
CACCACTGAAGCTGACGAGGACTTTGATGGTGTGGCCATGCTTACTGAGATTTTGTTACTGTTGG
CTCTGCGGAAGAGCTCCTTGACCCGCAAGCTTGTGCTGGAGGTTTGGCTGACATTTGTGTGTGGA
TGTGACGATGAAGGTAAAGTCCGTTTACTGGATGCCTCCTTGGGCTTATTATTTGAGATCTTAGC
TACTCGCGAGAACAAGGAAGGCCAAGACAAGCTCTTCGAAGGCGGTGACGAGTACGTGGCCGAAA
GTGAAAACGAGAGTGGCGACGAAGAGAATCAGGAGAAGGCGGAGA
Right flanking sequence: Indices 151916 -- 152415
CAACGACGAAGACTCAGATCTGGATTCGGACCTGGACTCCGACTCGGTGATGTCTGATGACTCTG
CCTCTGCTCTTGACAAAGAAACAACGGCCAAACTTGCTGCGGCTCTTGGAGTCTCTAATGAGGTT
AAATTTGATGACCTTTCTTCCGATGACGATATGCTGGAAGAGCTGATGGACGACGATGAGATGAT
GGCTATGGACGAGCAGCTCCTGAAGATCTTTGCCCAGCGGCGTGAAGCCCTCGATTCCACCGAGA
CTGGCAACAAGCGTAAGCAAGAAGCGGAGAACGCTCGCGAGCAGATGGTGTTTTTCAAACATCGC
GTTCTAGACTTGTTGGAGCTTGCGTGTAAAGCGCAGCCCAACTACCATCTCAACCTCACTATGCT
TGAGCCTTTATTAGGGGTTATCAATCTCACTACGGATAAGGACGTTGGTGTCAAGGCGCACAAGA
TCCTCAAGGCTTTCGTTGGCAAGACCAAATTGTCTGCAGAGGACA
Found at i:178137 original size:16 final size:16
Alignment explanation
Indices: 178116--178148 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
178106 TCTTTGTGTT
178116 GTCGGATCCGATCTGA
1 GTCGGATCCGATCTGA
*
178132 GTCGGATTCGATCTGA
1 GTCGGATCCGATCTGA
178148 G
1 G
178149 AAGTATGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.33, T:0.27
Consensus pattern (16 bp):
GTCGGATCCGATCTGA
Left flanking sequence: Indices 177616 -- 178115
TGTCGCTCAATCTAGTGCGTATAGAGGGGGCTATTGTTCTAAACGATCGCTCCCCTCGCACTATA
CATATAACCAGATTTACAGAGTTACAATCGAGCGGTTTTGCGGTCACTTACGACTCAAGGTGATG
AGTGTACGTTGGCGATTTCCCCCTTGTTCGTAGCCTTCTTCGCTGATCCTGGCGGATGACTATGC
CTCCACCGCTATTGTCAGTCTAAGCACCATGCATGCCCATGCATGCTCGTCGTCTAGTGGACAAT
TACGATATGGGTTGGCAAGGGGCACGAAGGTCGACGCGAACTTCGTTCCCGAGGCTTCCGCGCAT
GGTGAGTGAAGAGAAATCGTGAGATGTCACGGTGTCGTGGAAAGTGTGTTTTGACAGAGACGCGT
TTTTCCTTAATTGGATCATAGCGTACTCAAAGCGGCTCAAAGACTCGTACACCAGTATTAGCGTA
AACTAGGTACAAAATACCCGAAGGGTGGGGAAAACTCTTTGTGTT
Right flanking sequence: Indices 178149 -- 178648
AAGTATGCAAATTTCATCTTTATGCAATATTTTGGTGAAAAGCCGACAAAACCTCACTAACGAGG
GTTATATTTACGACAATTTCCAAAATGAAAGAGGAAAAGTGGGATGTACAAGAAGTCCGATTGAC
TTTTCTCCGACGATAGCCGCCAGTCTACAAGACCCTTGGGATTCCTAGTGTGCATCGCTTCTCTC
AAAGTGTCAGCTCCCATTCGGATCCACTAGTTACTAGAATCGGATTTGGGTTCCCCAGAGATGGA
AATAAACCCGATGGCGCCTCATATTCCTCTTCAGTTACTCGGTTTGTCACTTCGATTACGCCGCA
CTATCTGAGTGCATGCATAAAATCAGGCATATACTGAATCACGAATCCACCTTACAAACACGCTC
GCCATGACCAGTCCCTCGGAAGAGATCCAGCAGCTCGTCAACCGGAAACGTGCTGCTGGCGATTC
AATTGTTTTGGGCCATCTTCTCGAGGAAATTGAGAGGTTGGACGC
Found at i:197404 original size:21 final size:21
Alignment explanation
Indices: 197380--197428 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
197370 GCACCGCTGA
**
197380 TGCCATCAATGGCACCTCCAT
1 TGCCATCAACAGCACCTCCAT
* *
197401 TGCCCTCAGCAGCACCTCCAT
1 TGCCATCAACAGCACCTCCAT
197422 TGCCATC
1 TGCCATC
197429 CGGAGGAGCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.43, G:0.14, T:0.22
Consensus pattern (21 bp):
TGCCATCAACAGCACCTCCAT
Left flanking sequence: Indices 196880 -- 197379
CGACTTTTACCCCGCCAACCCTTTGCTTTTTGATTTTCACTCCTAAGTAACACCCATAATGGCTG
GACCTCCTCCTCCGCCTCCGCCGCCTCCTCCGCCACCTATGGGAGGTGCCGCCAATGCACCCAAG
CCCGCTGCCTCAGTGATGATGGGACGGGACGCTCTCTTGGGCGACATCCGCAAGGGCGCCAGATT
AAAAGCAACGGTGACCGTGGATAAATCAAAACCTGTGATCGAGGGCAAAACATCCGGGGGTGGCG
CAGCCATGGGTGCTCCACGCCTCCCCTCACTGGGTGCGCCTGCAGTGCCTCTGTCGGCACCTGCG
ATTCCGCTGGGTGCTCCTCAATTGGGCGACATCTTTGCTGGGGGTGTGCCCAAGTTGAAGCATGT
CAACCGAAGCGGCTCCAGCAACGCTGCTCCGCCGACGCCTCCTCTGATTCAGCCACCGTCGCTGT
CCGGCCCCAAGTTACCTTCGGGTCGCCCCAGCCATGCACCGCTGA
Right flanking sequence: Indices 197429 -- 197928
CGGAGGAGCTCCGTCGATTCCGTCCAGCCGGCCAGCGCAGTTGCTGGCACCGCCGCCTGTACCAG
CAGCTGCGCCTCCGTTGCCTTCTGGTGCACCTCCTTTACCGTCAGCGGCCCCACCGGTTCCTTCT
GGCGCACCTCCGTTGCCTACAGGCACCCCACCGGCACCAACACCGCCGAAGTCGCCAATGGCGGC
AGCAGCAGCCGCTAAGAAAGCACCCAAGCTTCCCCCGGCTCGCCCCAAGAAGCTGAATCATTTGC
GTGTAGCTAGTGCCAGCAGCGACATTGACTCCTCGCTGATGCGCTCCGTTACGCCCCCTCCTCCG
CCTATGATGGCACCACCGCTTCCCTCGGGTAACGCTCCTCCTGTACCCTCAGGTGGAGCGCCTCC
AATCCCTAGCGGAGGTCCACCACCTGTGCCCAGTGGAGGAGCACCACCACCTCCCCCGCCTGGAG
CTCCGCCATCCTTCGGTGCCTCGTCAAGAAGCTCCTCGAGCACTC
Found at i:268447 original size:12 final size:12
Alignment explanation
Indices: 268430--268461 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
268420 TTTCTGGTGT
*
268430 TGTTGTTGCTGG
1 TGTTGTTGCTGA
268442 TGTTGTTGCTGA
1 TGTTGTTGCTGA
268454 TGTTGTTG
1 TGTTGTTG
268462 GTGGACCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.06, G:0.38, T:0.53
Consensus pattern (12 bp):
TGTTGTTGCTGA
Left flanking sequence: Indices 267930 -- 268429
GGGTGAACGCGTACAACGAGGCAACCATCATGGGATAGCACCAGTAAAATGCCCACTCATCATTA
AGATACATGCGTGCACGGAACTCTTTAGAGATGAGATAGTATTGGTAGCGAAATGGCATATTCCA
CAACATAATAACAGCAAGAATATAGGCCAGAACGGCGTAATAGGCAACAATCTTGGCTGCTGAAA
CTGCCAGCACAATGATGTGCGATATGAGTGTTGTCTGCCATGGGTACTGGGTGGTGGAAAACCGC
TTGCGCAGTTGGATGATTACCCACATCCCTCCATACAAAAGAGGGGCACGCACAACAAAAGTGAG
CATGAGGTTGAGCATGAAGTGAGGATAGGGCACTGCTAACACAATGGAAGCAACAAGTGCAACAA
TCAAGTTGATATTACTCACGAAATGGAGTCTTTTGTCAGTTACTTGTCTAACATGATCGCGGAAT
GGTTGGTGCTGCAGTTTCCGAAGCAACTGCTGCTCTTTCTGGTGT
Right flanking sequence: Indices 268462 -- 268961
GTGGACCATTCTGGCGTGTGCTAATGGTTGGTTCAATGAGAGTCGCCCGGACAGGAACAGTTGTG
GATTATTGGAGGACGACTGGGTTGGCGATGCAAATGAATGGGAAAGCAAGGGCATCGTGGCGACC
CTAGATACTGGAGATATTTCAACTGCGTCTTGGGGAATCAAAGGCGGATTTCTTTCTTCCAATGG
GTTGCTAAACCTGTTCTTTCACCACTTGTTTGTGCACAGACCTTGCGAAAACAATTCGATCCGCT
CTTCGCGCTTACTTGAATGCGCAGGGAAAGGATAATATCGATAGCGGGAGCAGCAAAATGAAACT
GAATAATTCCATAAAAGACCACTGATGCTGGTCTTTCGAGGTATAAGCTTTCTATTCTTGATCAT
AACTATTGACCTTGTTTACATCGATGGATTTTGAATGATCCTGTACATTGAATAGAGTTGACACA
TACAGGTACCCAATCGGTGCCCTTGATAAATCCACGTCCCAGTTT
Found at i:293075 original size:24 final size:24
Alignment explanation
Indices: 292997--293075 Score: 113
Period size: 24 Copynumber: 3.3 Consensus size: 24
292987 TGGGTACCCC
292997 CCGCAGCAGGGTTACTACCAGCAG
1 CCGCAGCAGGGTTACTACCAGCAG
* *
293021 CCTCAGCAGGGTTACTACCAACAG
1 CCGCAGCAGGGTTACTACCAGCAG
* *
293045 CCCCAGCAGGGCTACTACCAGCAG
1 CCGCAGCAGGGTTACTACCAGCAG
*
293069 CAGCAGC
1 CCGCAGC
293076 CGGTGTACGT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.27, C:0.37, G:0.25, T:0.11
Consensus pattern (24 bp):
CCGCAGCAGGGTTACTACCAGCAG
Left flanking sequence: Indices 292497 -- 292996
TAAGCCATCACCCGCGGAAGCCCCCGCGACTAGCCTTTAAACTCAGATTTCTTGTGGGGATCAAG
GTCATCATGCAGCGTCAGTGCCGCGCCTCGTCATCGGTCCGATATGCGACTCATTAACGTCAACC
GATTGTTAACGGTTTCTGTGGAATGCCTGAAGCTCCCGAGAGACCGTTGAAAGATATCCTTTCAA
CGATAATTAATATATCACCGTGTTCGCCACCTTTGACCATTTAAAGCCCCCCTTGATCCGTTCCT
GTATATACGTTTTCTTTGCAAACTCGCCGCAGCTGCACAGTTTACAAGCCAAGACCTTGAAAGTG
AATCACTCATCTTTTCAAGAACATGGACTACAAGGCTCCTACCGGTGCTCCCCCCGAATGGGGCA
ACAACGGCGGTCAACAGCACCCCCAGCAACTGTACCAGGGCAACGGCACCGAGGGCGACCGTGGC
ATGTTTGGTCACCATCAACAACAGCAGTACGGTGGTGGGTACCCC
Right flanking sequence: Indices 293076 -- 293575
CGGTGTACGTCCAGCAGCAAGGGCGCAGTAGCTCTGACGGGTGCTTGACCGGTTGTTTGGCGGCG
TTGTGTGTGTGCTGCACCTTGGACATGTTGTTCTAATGAATGTAACTAATAAATATTATGATGAA
ATAACCCGATTGATCAAAATGGTGTATCAATTTATTCTATGAGTATTCTATTTCGGGGTATCCCA
AGGGATCGTGGTGGCCAAGACGATATCGGCAACCAACACACATGCACCGTTGATGAAAAAGCCCC
AACGAAGATGTTTGTGGGACGCCAACCATCCTGTGACCGGAGGCCCCACACTCCGAGCGGCCGTT
TTACCGATGTTGACAATTGCCAACACCTTGGATAACTCCGTGGACGGGAATAAGTGCGTCAACAA
CATCTGGCGTGGAACAACGTCCAATGTCAGCAGAGCAGCGTATCCAACGAGTAAAGCAGCTACCG
CATAGAAGGAGTTACTGACAAAGGTAATTGCGGCAAACATTACGG
Found at i:305656 original size:9 final size:10
Alignment explanation
Indices: 305629--305664 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
305619 CTTTCAAAAA
305629 CCTCCAACGG
1 CCTCCAACGG
305639 CCTCCAACGG
1 CCTCCAACGG
305649 CC-CCAACGG
1 CCTCCAACGG
305658 CCTCCAA
1 CCTCCAA
305665 AACACTACGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.22, C:0.53, G:0.17, T:0.08
Consensus pattern (10 bp):
CCTCCAACGG
Left flanking sequence: Indices 305129 -- 305628
GTCCGAAAGTGCGCCAAGGCACGGAGCTTGTCGCGAAGAAGCCCGAAGAGCGTGTCGATCTCCGC
CTGGGACCGCTTGAAGTTTTCGATCGAGAACGCGTACACCGAGACGTGTTCGATACCAAGCAGGT
AGGACACGTCGAGGAGTTTGATCAAAGTTTCAGCGCCCTGTTCATGGCCCTGAGCAAGCTTGAGT
TGGTGTTGTTTGGCAAAGCGACGGTTGCCGTCCATGATAAACCCCACATGGCGCGGGATAGGACC
GGTTTTGGCAATGGCAACCACCCAGTCCTTGATGAACGCGATTAAATACAACGCGAGAGGGAAGC
CCGTGATCAATTTAACAAGTTTGTGGTACAGCGCCGTGGACATTGTGGTGGTAATTTGAAATGCT
AGGACCGGTTTTTATACTAGCGGATTGGTGCTCCACGCGCGTCTCAGAAATCGGCACCCAGCCGA
CCTCCAAAGTGACAGGACTTCCAAACTTCCAAAAACTTTCAAAAA
Right flanking sequence: Indices 305665 -- 306164
AACACTACGACTTTTCCACAACCACGCCCTCCTTGGTCGCGTCCAACGTGCGGATCACCTTCTTG
ACCTCCTTTTTCGAGCGTTCCCGCACCCGGGCCTCGTCGATTCGGCGCAAGTAGCCCATGTATAC
CACCACCTCTGCCACTAGTACAAGCAACCCCGCGAGCACACTCAACAACACCCGCCACACCACGT
CCAACCCCCACGACGACGCCGTCCAGTACCACACCGCGTAGGCAACACTGGCCACGGATATGAAG
ATGTTGAACATGGTGGTGATCTGGCTCTTGACCTCCTTGGCCGCCTGCGCGGGCAGCGGGGTGTC
CTTGGTGAGCGGGTCCTCGTACAACGTCTCGTACTTGGGCTTGGCCCGCAACAACTGCTGGTACT
CTTTCTCTTTGGCCTCCAAGCGGAGGCGTCGCATCAACTCCACGTACTCCGGGGTCTTTTCTTTG
GTGGGCTCGGCCGCGGGTTTGGGCCACTCCAACGTGGTGGCCGCG
Found at i:309969 original size:16 final size:16
Alignment explanation
Indices: 309917--309970 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
309907 GTATAGAGTG
*
309917 TGTTTAGAGTAAGCAA
1 TGTTTAAAGTAAGCAA
*
309933 TGTTAAAAGTAAGCAA
1 TGTTTAAAGTAAGCAA
309949 TGTTTAAAGTAAGCAA
1 TGTTTAAAGTAAGCAA
309965 TGTTTA
1 TGTTTA
309971 GAGTTCAAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (16 bp):
TGTTTAAAGTAAGCAA
Left flanking sequence: Indices 309417 -- 309916
CGAGTTGGCGGCGCCGCTCGAGGGGCTTGCCGACAAGGCGGTGCAGTTGAACCAGAAGCTCAAGG
AGCTGGGGTCGCGCGAGTCCGGCCTCATGAAGGAGTTGGCGGCGGTGGACGCGGCACGGGTGTTG
CGCCAGTTCACCGCGCCGCCCGAGGGCCAGACGCTGCTGGTGGCGGTGGTGTACCGGGCCGACAG
CGATCCCCAATACATGTCGGTGCTCCAGAAGGAGATCCTGACCCGGGCCAAGGGCGCGGCAGGGC
TTGACTTGCAGAAGCACACCGTGGTGATGATCAACGGCGAGGCGCCCGGCGGCGGGATGGTGAAG
GCCACGGGTCCTCGCTCGGAGGAGGTGGCGGCTGGGTTGAAGTCTGCGCTTGCCAACATCAAGGG
CGGTGGCAAGGGGTCCACGTTCCAGGGGAAGGTGACCAAGTACGAGAAGGGCGAGGTCCTGGCGG
CGTTGGCGTTCCTTGAGTCGTTGCAGAGGGCGTAAGTATAGAGTG
Right flanking sequence: Indices 309971 -- 310470
GAGTTCAAGGTTAGGCTGAAGGTTAGGTGGTCTGGTGGATGTACCGGCCAGGTTGTAGATTGTTC
TTGTGGCTTTACTTACATGTATCGGGCCGGGCTGTAGATTAGGTGGTTTGGTGGGTGTATTTACA
TCCCATGCTCAGCTTTAAATGCCGGTGGTTTGGTGGGTGTAGTTACATACCGTGCTTAGTTGCAA
TATTGGAGGTTTGGTGGATGATTGACATGTACTCGGCCAGGCCGTAATGATGTTAGGTGGATGAA
AACATCTTCCGGGCCAAGCTGTAAATTACTGGTGGTGGATGTATTTACCGTGTAAGTGAAATTAT
CGTTAAGGTTCGGTGGTCCGTTGATATGTATTAGGCTAGGGGATGCCGGGCTCGTGGTGGACGAC
CCCCACGTGTTCGGGACGGCCGGCGTGGCCGTTGGGAATGCCGCCCGTGCTCTCGTTCAACCCGA
CCTCGGGGATAAACGACGCGTGGCTCTGCATGGAGTAGATGGTCA
Found at i:364691 original size:54 final size:54
Alignment explanation
Indices: 364633--364746 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
364623 CAAAAGGCTG
* *
364633 AGGAGGCTGCAAACCAGGCTTCCGCCAAAGCTACCGAGGCTAAGCAAAACGTCA
1 AGGAGACTGCAAACCAGGCCTCCGCCAAAGCTACCGAGGCTAAGCAAAACGTCA
* * * * * *
364687 AGGAGACTGCAAACCAGGCCTCTGCCAAGGCTGCTGAGGCTAAGGAGAACGTCA
1 AGGAGACTGCAAACCAGGCCTCCGCCAAAGCTACCGAGGCTAAGCAAAACGTCA
364741 AGGAGA
1 AGGAGA
364747 ACGCCAGCGA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.32, C:0.26, G:0.30, T:0.11
Consensus pattern (54 bp):
AGGAGACTGCAAACCAGGCCTCCGCCAAAGCTACCGAGGCTAAGCAAAACGTCA
Left flanking sequence: Indices 364133 -- 364632
GTAGCAATATAAAACCCGCCTTCAGACACTAACCCAAACACAAATCAACACAATGTTTCGTGTAA
TTGCTAGTCGTCAACTTCGCGTCAAGGCTGTTGGGGTTGCCAGTCGTACTCCCAGCGTGGCCGTG
CGTTACCAGTCCAAGATCAAGCATGATTTGGATGAGGCTAACCGGAAAGCGGGCCAAAGACTCGC
TGAGGACATTGAGGATGCCCAGCGGGCTGGTCACAAAATTGAGGCTGACGCCAAGCAAAAGGGTG
CTGAATTGAAGCACGACATGGAGGCTACTGCGGGGCGTATTTCTGCCACTGACCAGGCCTCTCTT
GATCAGTTCCAAAGAGACGCGCAGGCCGATGCTTCGAAGCTTGCCCAAGACGGTCGCAAGCTCAA
GGAGTCGATGAAAGAAGGTGCTGAGGAGCTCAAGGATGATGTCCACCGCAGAGCCTCGAATGTGA
AGGGCGAGGCTAGACAGGCTGCCCAGGAGGGTAAGCAAAAGGCTG
Right flanking sequence: Indices 364747 -- 365246
ACGCCAGCGAGGCTGCTGACCGCGCTTCCGCAAAGGCCTCCGAGGCGAAGGAGAACGTTAAAGAG
ACCGCCAACCAGGCGTCTGCGAAGGCTACCGAGGTCAAGGAGAACGCTAAGGAGGGTGCCCAATA
CGCCAACCAAAAAGCGGGTGAGGTGTTGGCCGACGATGTGATTGAGCCTGCGGAACAGGCGGCCC
AGAAGGCGAAGCAAGCCACCGAGAACGCTGCTGAGAAGGCTAAGCTGGCTACTGAAAACGCTGCT
GACAAGACCCAGCAGGCTGCCCAGACTGCCAACGTCAAGGCTGGTGAGGCCATTGCTGACAATGT
CATCGAACCTGCGGAGAATGCTGCCCAGAAGACTAAGGAGGCCACCCAGAACGCTGCTGAGAAGA
CTCAGCAGGCGGCCAAGACGGCCAATGTTAAGGCTGGCGAGGCCATTGCTGACAACGTGATTGAG
CCCGCCGAGAACGCTGCTCAAAAGACCAAGGAGGCAACGATCAAC
Found at i:364813 original size:120 final size:120
Alignment explanation
Indices: 364650--364865 Score: 269
Period size: 120 Copynumber: 1.8 Consensus size: 120
364640 TGCAAACCAG
* * *
364650 GCTTCCGCCAAAGCTACCGAGGCTAAGCAAAACGTCAAGGAGACTGCAAACCAGGCCTCTGCCAA
1 GCTTCCGCCAAAGCTACCGAGGCGAAGCAAAACGTCAAAGAGACCGCAAACCAGGCCTCTGCCAA
* *
364715 GGCTGCTGAGG-CTAAGGAGAACG-TCAAGGAGAACGCCAGCGAGGCTGCTGACCGC
66 GGCTACCGAGGTC-AAGGAGAACGCT-AAGGAGAACGCCAGCGAGGCTGCTGACCGC
* * * * * *
364770 GCTTCCG-CAAAGGCCT-CCGAGGCGAAGGAGAACGTTAAAGAGACCGCCAACCAGGCGTCTGCG
1 GCTTCCGCCAAA-G-CTACCGAGGCGAAGCAAAACGTCAAAGAGACCGCAAACCAGGCCTCTGCC
364833 AAGGCTACCGAGGTCAAGGAGAACGCTAAGGAG
64 AAGGCTACCGAGGTCAAGGAGAACGCTAAGGAG
364866 GGTGCCCAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
119 4 0.05
120 73 0.90
121 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.31, T:0.11
Consensus pattern (120 bp):
GCTTCCGCCAAAGCTACCGAGGCGAAGCAAAACGTCAAAGAGACCGCAAACCAGGCCTCTGCCAA
GGCTACCGAGGTCAAGGAGAACGCTAAGGAGAACGCCAGCGAGGCTGCTGACCGC
Left flanking sequence: Indices 364150 -- 364649
GCCTTCAGACACTAACCCAAACACAAATCAACACAATGTTTCGTGTAATTGCTAGTCGTCAACTT
CGCGTCAAGGCTGTTGGGGTTGCCAGTCGTACTCCCAGCGTGGCCGTGCGTTACCAGTCCAAGAT
CAAGCATGATTTGGATGAGGCTAACCGGAAAGCGGGCCAAAGACTCGCTGAGGACATTGAGGATG
CCCAGCGGGCTGGTCACAAAATTGAGGCTGACGCCAAGCAAAAGGGTGCTGAATTGAAGCACGAC
ATGGAGGCTACTGCGGGGCGTATTTCTGCCACTGACCAGGCCTCTCTTGATCAGTTCCAAAGAGA
CGCGCAGGCCGATGCTTCGAAGCTTGCCCAAGACGGTCGCAAGCTCAAGGAGTCGATGAAAGAAG
GTGCTGAGGAGCTCAAGGATGATGTCCACCGCAGAGCCTCGAATGTGAAGGGCGAGGCTAGACAG
GCTGCCCAGGAGGGTAAGCAAAAGGCTGAGGAGGCTGCAAACCAG
Right flanking sequence: Indices 364866 -- 365365
GGTGCCCAATACGCCAACCAAAAAGCGGGTGAGGTGTTGGCCGACGATGTGATTGAGCCTGCGGA
ACAGGCGGCCCAGAAGGCGAAGCAAGCCACCGAGAACGCTGCTGAGAAGGCTAAGCTGGCTACTG
AAAACGCTGCTGACAAGACCCAGCAGGCTGCCCAGACTGCCAACGTCAAGGCTGGTGAGGCCATT
GCTGACAATGTCATCGAACCTGCGGAGAATGCTGCCCAGAAGACTAAGGAGGCCACCCAGAACGC
TGCTGAGAAGACTCAGCAGGCGGCCAAGACGGCCAATGTTAAGGCTGGCGAGGCCATTGCTGACA
ACGTGATTGAGCCCGCCGAGAACGCTGCTCAAAAGACCAAGGAGGCAACGATCAACGCGGCTGAG
AAGACTCAGCAGGCCGCCAAGACCGCTAATGTGAAGGCTGGTGAGGCTATCGCCGAGAACGTAAT
TGAGCCCGCTGAGACTGCCGCCCAGAAGACCAAGGATGCGGCCGT
Found at i:365181 original size:123 final size:123
Alignment explanation
Indices: 364998--365392 Score: 380
Period size: 123 Copynumber: 3.2 Consensus size: 123
364988 GGCTACTGAA
* * * * * *
364998 AACGCTGCTGACAAGACCCAGCAGGCTGCCCAGACTGCCAACGTCAAGGCTGGTGAGGCCATTGC
1 AACGCTGCTGAGAAGACTCAGCAGGCCGCCAAGACCGCCAATGTCAAGGCTGGTGAGGCCATTGC
* * * * * * * *
365063 TGACAATGTCATCGAACCTGCGGAGAATGCTGCCCAGAAGACTAAGGAGGCCACCCA-G
66 TGACAACGTCATCGAACCCGCCGAGAACGCTGCCCAAAAGACCAAGGAGG-CAACCATC
* * * *
365121 AACGCTGCTGAGAAGACTCAGCAGGCGGCCAAGACGGCCAATGTTAAGGCTGGCGAGGCCATTGC
1 AACGCTGCTGAGAAGACTCAGCAGGCCGCCAAGACCGCCAATGTCAAGGCTGGTGAGGCCATTGC
* * * * *
365186 TGACAACGTGATTGAGCCCGCCGAGAACGCTGCTCAAAAGACCAAGGAGGCAACGATC
66 TGACAACGTCATCGAACCCGCCGAGAACGCTGCCCAAAAGACCAAGGAGGCAACCATC
* * * * *
365244 AACGCGGCTGAGAAGACTCAGCAGGCCGCCAAGACCGCTAATGTGAAGGCTGGTGAGGCTATCGC
1 AACGCTGCTGAGAAGACTCAGCAGGCCGCCAAGACCGCCAATGTCAAGGCTGGTGAGGCCATTGC
* * * * * * * * * ** *
365309 CGAGAACGTAATTGAGCCCGCTGAG-ACTGCCGCCCAGAAGACCAAGGATGCGGCCGTC
66 TGACAACGTCATCGAACCCGCCGAGAAC-GCTGCCCAAAAGACCAAGGAGGCAACCATC
* *
365367 AACGCTGCTGAAAAGACTAAGCAGGC
1 AACGCTGCTGAGAAGACTCAGCAGGC
365393 TACTAAAGAC
Statistics
Matches: 226, Mismatches: 44, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
122 6 0.03
123 220 0.97
ACGTcount: A:0.28, C:0.28, G:0.30, T:0.13
Consensus pattern (123 bp):
AACGCTGCTGAGAAGACTCAGCAGGCCGCCAAGACCGCCAATGTCAAGGCTGGTGAGGCCATTGC
TGACAACGTCATCGAACCCGCCGAGAACGCTGCCCAAAAGACCAAGGAGGCAACCATC
Left flanking sequence: Indices 364498 -- 364997
TTGCCCAAGACGGTCGCAAGCTCAAGGAGTCGATGAAAGAAGGTGCTGAGGAGCTCAAGGATGAT
GTCCACCGCAGAGCCTCGAATGTGAAGGGCGAGGCTAGACAGGCTGCCCAGGAGGGTAAGCAAAA
GGCTGAGGAGGCTGCAAACCAGGCTTCCGCCAAAGCTACCGAGGCTAAGCAAAACGTCAAGGAGA
CTGCAAACCAGGCCTCTGCCAAGGCTGCTGAGGCTAAGGAGAACGTCAAGGAGAACGCCAGCGAG
GCTGCTGACCGCGCTTCCGCAAAGGCCTCCGAGGCGAAGGAGAACGTTAAAGAGACCGCCAACCA
GGCGTCTGCGAAGGCTACCGAGGTCAAGGAGAACGCTAAGGAGGGTGCCCAATACGCCAACCAAA
AAGCGGGTGAGGTGTTGGCCGACGATGTGATTGAGCCTGCGGAACAGGCGGCCCAGAAGGCGAAG
CAAGCCACCGAGAACGCTGCTGAGAAGGCTAAGCTGGCTACTGAA
Right flanking sequence: Indices 365393 -- 365892
TACTAAAGACGCTAACGTCAAGGCCGGTGAGGTGTTGGCTGACGATGTGATCGAGCCTGCTCAGC
AGGCTGCCCAAAAGGTCAAGAACGCTGCTGAGAATGCTGCTGAGAAGACCGAGGAGGCTGCCAAG
GCCGCCAACCTCAAGGCTGGTGAGGCCGTGGCAGACAACGTGGTGGAGCCTATTGAGAAGGCTAA
CGAAAAGACCCAAGGCTTCTTCAGCCGGATCTTTGGTGGTAACAAGAAGGAGTAAACAATTAATA
CATACGTAAGGATCGAACTGCTAATACACTCTTGTCTATGATTCATGTAAAATTCGGTAAAATAA
TTGACATAATGCAAAATGTTGAAACAAATGCAATAATCTACCAAAAACCATTTGCTCGTGCTATT
GAAATTATCAGGATAAATATACATTAAGGCTTCATCTTCTCGTCCATGGGGGCAGCCGCGGCCGG
CTGTTGTGGGGGACCGTGCACAATGTTGGCCGGCACCGGTGCTGG
Found at i:366781 original size:21 final size:21
Alignment explanation
Indices: 366703--366784 Score: 64
Period size: 21 Copynumber: 3.8 Consensus size: 21
366693 CGTACATCAG
366703 GCCGTA-CCCGCCGTAGGACGA
1 GCCGTACCCCGCCGTA-GACGA
* *
366724 GCCATATCCC-CCGTA-ACTGGA
1 GCCGTACCCCGCCGTAGAC--GA
366745 GCCGTAGCCACCGCCGTATGACGA
1 GCCGTA-CC-CCGCCGTA-GACGA
366769 GCCGTA-CCCGCCGTAG
1 GCCGTACCCCGCCGTAG
366785 CCTCCCATTC
Statistics
Matches: 50, Mismatches: 3, Indels: 17
0.71 0.04 0.24
Matches are distributed among these distances:
19 2 0.04
20 1 0.02
21 25 0.50
22 5 0.10
23 2 0.04
24 13 0.26
26 2 0.04
ACGTcount: A:0.20, C:0.39, G:0.28, T:0.13
Consensus pattern (21 bp):
GCCGTACCCCGCCGTAGACGA
Left flanking sequence: Indices 366203 -- 366702
TAGGGGAAGCCAATCAGCGCCGCCAAAAATAAGAGCAAGGGCTTAAAAGAGATGCGGGGCTTCTT
GGGACCAGCAGCAGCGGCAGTGGCGGCGGCAGCCTCCAACTTCTTCTGCTTGCTCTGGAACTTGG
CGAACTCCTTGGAGTTCAACCCGTAGTTGGAGCCGGTCAACTTGGCAAACAACTTTTTCACCAAC
CGGATCAATGCAAAGATCCCGAGGATCAGCCCGAGGGCGTTTTTGAGGTTGCCAAACTGCTCGGC
AAGCGACACCATGGTGAAAAACGACGAGTGGGTCGCCATATATGTGGCCTCCAACATCTGGGCAA
ATCCGCCCACGGCACCAATGATGCCCTCTATAAGTTGAAAGGTGGCCTGGGTGCCCTCGCCAAAG
CCGCCGGGGCCTTGCATGCCCCCCATGCCGTTGCCGTACATGCCACCGCCATACATTCCGCTCCC
GTATCCGCCGTACATCAGGCCAAATCGGTTGCCACCGTACATCAG
Right flanking sequence: Indices 366785 -- 367284
CCTCCCATTCCGCCCATGCCACCCATCCCATAGGACGACGACGGATATGACGAGCCCATCCCGCC
GTAGGAGTTGACGGTGGTGCCCACGTTATTGAGGTCCTGGGCTAAACTTGCTGGGCGCTCGGGTA
CCGTGGCGCCTGCGGTGGCGGAAGATGTGGGTAATGCGGAGGATGTGGTAGGAGCGGCAGCAGCA
GCGACGCCGGCGTCGGAGCCCGTCTCCCAGGGCTTTGCTCTTGGTGCAGACATGTGTGGATATGC
GTTGTGTGTAATGGAAAGTCTGGGTCAAGTTCGGGTTCGGACTGGGATGATGGAGATTGTTTGAT
TGTGATAAGATTTTTTTTCTACCCGAGGCAATTGCCTGCTGTTTTTTCGCACAGTATGGGGTAAT
CACATGGGAAGCACCGAGGGGCGAGAAACGGGGCTACGGGTCCACCAGCGCTCGCTCGAGTGCAC
GGGCGGGGTGTGTGACTGGGATCGGGCATATATTTCGTGTTTCGC
Found at i:367853 original size:14 final size:14
Alignment explanation
Indices: 367830--367880 Score: 75
Period size: 14 Copynumber: 3.6 Consensus size: 14
367820 TTGTATGGTG
367830 GGTTGTGATACGGT
1 GGTTGTGATACGGT
*
367844 GGTTGCGATACGGT
1 GGTTGTGATACGGT
**
367858 GGTTGTGATTTGGT
1 GGTTGTGATACGGT
367872 GGTTGTGAT
1 GGTTGTGAT
367881 TTGGTAGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.12, C:0.06, G:0.43, T:0.39
Consensus pattern (14 bp):
GGTTGTGATACGGT
Left flanking sequence: Indices 367330 -- 367829
TTCGCAGGCCCATGGGATTTATGCATGACTCTTACCCCACCTTCAGTCTGCCGCGGAGTGCGGCC
GCGGAGACGTGAGTCAACGGTCGTCGGAGTGGGTGGGCTGGCCGGTTGGGGAAGGTCGTGGGAGG
CGAGCGAGGTCACGGGGGTTGTAGTTTCCCCATTGGCTGCGTAGAGACGCTGGAAACGGCGTGTT
CCACGGGTAATCGACCCTACTACAGTGAACAATCGGAGTGCTTCGATTGGCTCCGATGATCTGTT
AGCGAACCAGTCTGTTGGAGGTACAGTAGCGAGTGCCAGTAGCGAGTTTTGACAATGGTGGCGAA
TTGACAGGGTCATGGTGTCAATTGTGGCCGTGGGAGAGACAGAGACCTCGTTGAGAGGGGTGGGT
CAATCGGTGGAGCATAATAGGTCAAAGCGATGGGCCTCGTTGTGGTGAATTGTATTGTGGTGTAA
TGATGGTTGTGCCGTTGTGATAGTGATGTGGTTAGTTGTATGGTG
Right flanking sequence: Indices 367881 -- 368380
TTGGTAGGTGGTCGTGATTCGGTGAATCGTGACTTAGTAACTTGTGACCTGGTGGTGGATTGTTA
TAATCCACCCGTAGGCTACCGTCTACATTAAACGTGCACAAGCCTACAAACCGCAGCCCACGCCG
CTGGCCTACACACTTGCAGTGTCCATGAATTTATATTCCCTATTTAGGGCAACGGCTCCGACGAG
CTCAGCAACCGGTTCAAGTGCAAGTACACATCGGTGCCGTAGCCCTCCATCGAGATCAACTTGAG
GTCGCCGCCAAAGTACTGCGCGTACAACCGCGAGATGGGAAGGCCGTAGCCAAACCCGGCCATGG
GCGCCTTGAACAGCAGCTGGTTCTCGTCCGTCTCAAGCGAGGGGGTCTCGTTGACGGTGGTGTAC
AAGTAGGTCCAGATCAACGGCACCTGCGACGTGGCAATGCCACCGCCCTCGTCGGAGATCTTGAT
GGCGATGTCCTCGGTGCCCTCCGAGATGATCACCTTGATCGGAGG
Found at i:367881 original size:14 final size:14
Alignment explanation
Indices: 367823--367885 Score: 72
Period size: 14 Copynumber: 4.4 Consensus size: 14
367813 TGGTTAGTTG
367823 TATGGTGGGTTGTGA
1 TATGGT-GGTTGTGA
* *
367838 TACGGTGGTTGCGA
1 TATGGTGGTTGTGA
*
367852 TACGGTGGTTGTGA
1 TATGGTGGTTGTGA
*
367866 TTTGGTGGTTGTGA
1 TATGGTGGTTGTGA
*
367880 TTTGGT
1 TATGGT
367886 AGGTGGTCGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
14 38 0.88
15 5 0.12
ACGTcount: A:0.11, C:0.05, G:0.43, T:0.41
Consensus pattern (14 bp):
TATGGTGGTTGTGA
Left flanking sequence: Indices 367323 -- 367822
TGCTTTTTTCGCAGGCCCATGGGATTTATGCATGACTCTTACCCCACCTTCAGTCTGCCGCGGAG
TGCGGCCGCGGAGACGTGAGTCAACGGTCGTCGGAGTGGGTGGGCTGGCCGGTTGGGGAAGGTCG
TGGGAGGCGAGCGAGGTCACGGGGGTTGTAGTTTCCCCATTGGCTGCGTAGAGACGCTGGAAACG
GCGTGTTCCACGGGTAATCGACCCTACTACAGTGAACAATCGGAGTGCTTCGATTGGCTCCGATG
ATCTGTTAGCGAACCAGTCTGTTGGAGGTACAGTAGCGAGTGCCAGTAGCGAGTTTTGACAATGG
TGGCGAATTGACAGGGTCATGGTGTCAATTGTGGCCGTGGGAGAGACAGAGACCTCGTTGAGAGG
GGTGGGTCAATCGGTGGAGCATAATAGGTCAAAGCGATGGGCCTCGTTGTGGTGAATTGTATTGT
GGTGTAATGATGGTTGTGCCGTTGTGATAGTGATGTGGTTAGTTG
Right flanking sequence: Indices 367886 -- 368385
AGGTGGTCGTGATTCGGTGAATCGTGACTTAGTAACTTGTGACCTGGTGGTGGATTGTTATAATC
CACCCGTAGGCTACCGTCTACATTAAACGTGCACAAGCCTACAAACCGCAGCCCACGCCGCTGGC
CTACACACTTGCAGTGTCCATGAATTTATATTCCCTATTTAGGGCAACGGCTCCGACGAGCTCAG
CAACCGGTTCAAGTGCAAGTACACATCGGTGCCGTAGCCCTCCATCGAGATCAACTTGAGGTCGC
CGCCAAAGTACTGCGCGTACAACCGCGAGATGGGAAGGCCGTAGCCAAACCCGGCCATGGGCGCC
TTGAACAGCAGCTGGTTCTCGTCCGTCTCAAGCGAGGGGGTCTCGTTGACGGTGGTGTACAAGTA
GGTCCAGATCAACGGCACCTGCGACGTGGCAATGCCACCGCCCTCGTCGGAGATCTTGATGGCGA
TGTCCTCGGTGCCCTCCGAGATGATCACCTTGATCGGAGGGTAGT
Found at i:377020 original size:12 final size:12
Alignment explanation
Indices: 377003--377031 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
376993 CTCAGGGGCA
377003 CCACCGGGCATG
1 CCACCGGGCATG
377015 CCACCGGGCATG
1 CCACCGGGCATG
377027 CCACC
1 CCACC
377032 AGGAGCACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.48, G:0.28, T:0.07
Consensus pattern (12 bp):
CCACCGGGCATG
Left flanking sequence: Indices 376503 -- 377002
ACGTTGATTGTGCAAAATGAAACGCCCGAGTCAGGCCGGAACTCCTTACCCGCAATATAATGGCC
TAGGCGGCTTTGAATCCGGATTTGGAGCAGCACATCTCTCATAGAGGCGGAGCCTGGCGTGCGTG
GTAAAAAGCAACGCTGGTAGCAAAGACACGTTGTTTATCAAGTTCCAGTTTTTGGGTCCATTGTT
ATCAAACCAAGATGGGCGCGAGCGGTGGGGGGCGCCACTGTTTATATACGTTGAAGATAACCCCA
CTTTGATCACCTGCTTGGCAATTTCCCCACAATGCCTAACCCCGAAGTGGCCTAAGCGGCAAGTC
CTGCGAAAATTTCCAATTTTATCGCACGACCAAATCACCCGTTTTTCCACGGATCTACACAAGAT
TTCGAGTTCATCATACTTTCTATAATGTATTAATCTCTATACGTTTATCATCTCACATAATTTAG
TCAACCTCCTCGACGGTGGGGCCAGAGGGAGTCTCCTCAGGGGCA
Right flanking sequence: Indices 377032 -- 377531
AGGAGCACCGCCAGCAGCGTAGATCTTGGAGATGATGGGGTTAGCAACACCCTCCAACTCCTTCT
GCTTGTCAGCGTACTCCTCGGTGGTACCGGTCTGGTTGTTGTCCAACCACTCAATGGTCTCGTTG
GCGGCCTTGGTGACGGTCTCGACGTCAGCGGCGTCCAACTTGGACTTGGTCTCCTCAGAGTCCAA
AGTGGTCTTCAAGGAGTAGGCGTAAGACTCAAGACCGTTCTTGGCCTGGACTCTGGCAGCCTCAG
CCTCGTCCTCCTCCTTGTACTTCTCGGCGTCGGAGACCATGCGCTCGATGTCCTCCTTGGACAAA
CGGCCCTTGTCGTTGGTGATGGTAATCTTCTGAGTCTTACCAGTGCCCTTCTCAACAGCGGACAC
GTTCAAGATCCCGTTAGCGTCCAAGTCGAAGGTGACCTCAATCTGGGGAACACCACGAGGAGCAG
GGGGGATACCCGACAACTCGAACTTACCAAGCAAGTTGTTGTCCT
Found at i:390304 original size:14 final size:14
Alignment explanation
Indices: 390261--390308 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
390251 CTCTTATTTG
*
390261 CTTCCTCCCATCGA
1 CTTCCTCCCATCTA
*
390275 CTTCCTCCCATTTA
1 CTTCCTCCCATCTA
*
390289 CTTCCTCCCAACTA
1 CTTCCTCCCATCTA
390303 C-TCCTC
1 CTTCCTC
390309 TCTGCTTCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
13 5 0.17
14 25 0.83
ACGTcount: A:0.15, C:0.50, G:0.02, T:0.33
Consensus pattern (14 bp):
CTTCCTCCCATCTA
Left flanking sequence: Indices 389761 -- 390260
CGGCGCCCCTGTCTACTTGACCTCCGTGCTCGAGTACTTGACTGCTGAAATTTTGGAGTTGGCGG
GTAACGCTGCTCGTGACAACAAGAAGTCGCGTATTATTCCCCGTCACTTGCAATTGGCCATCAGA
AACGACGAGGAGTTGAACAAGTTGCTTGGTCACGTTACCATTGCTCAGGGTGGTGTGTTGCCCAA
CATCCACCAGTCTTTGTTGCCTGCGAAGACAGGCAAGCCCGAGAAGGGCAAGCCGTCTCAGGAGT
TGTAAGCCCACCGGTTGGTCAACAACAGGCTTGTATATGAATCAATAAACACTATGAGAGATCGT
GAAGGTTCAAGGGGTTTTGTTGCCCCTGAATCGCTATCAAAACATATAGAGTTTGAATACGGGAA
GTAATAATAGTAGGGATCGGCCCTTCGAATACAGTGATTCGATAGACTCTGGTTTAATGTCAAAG
TCGACGCTGAATCGATTCCGATTCAATCCTTCTTTCTCTTATTTG
Right flanking sequence: Indices 390309 -- 390808
TCTGCTTCACTTTTTCACTTTTTCCATATACCCTATGATGCTACCCCATAACTGTGGCTACCGCG
CATCGCATCAGCATGGACGAGTTGCTCACCTGGATCCGCCATGACCCGGTAGACACCCATTCCCA
CACGTTCATCTCTCCTGACATTGTCGTCCGTGAGCTGGAGGTGTTTGGTAGAGGTATCTTCGCTG
AGGGTGCCCTCAAACCGCTGCTTATTCTACGCATCCCCCACAACTTTTTGGTCAACTTCACCACC
GTGGTGAGACACATCACCCGATACAACCCCTCCATCAACTTGGACAACAACCCCGTGTACTCGGT
AATCAACCTTCCGTACGAAGGAGGAGCTTCCGATGACGTCACCTCGGTTTATTCCCACTTTGAGC
TCGCTACTCTTCATGGGTTGACGTCGTTCCAGCTCATTGGCATGTTTTTGACGCTCGAGGCACGC
CGGCCCAAGTCTTTCTGGCAGCCATTTCTCAGCATGTTGCCTGGA
Found at i:401115 original size:9 final size:9
Alignment explanation
Indices: 401103--401153 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
401093 ACCAGCACCA
401103 CCCATGCCG
1 CCCATGCCG
401112 CCCATGCCG
1 CCCATGCCG
**
401121 GGCATGCCG
1 CCCATGCCG
*
401130 CCCATACCG
1 CCCATGCCG
401139 CCCATGCCG
1 CCCATGCCG
*
401148 GCCATG
1 CCCATG
401154 TCGTCCTCGT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.14, C:0.49, G:0.25, T:0.12
Consensus pattern (9 bp):
CCCATGCCG
Left flanking sequence: Indices 400603 -- 401102
CATTTTTCCAAGACTTGACTCGATATCCCTCGCGTTTGTTGTATTTCGCAATGTCCTCCATTGCA
ATAGTTCCAGTCGGATAGTCAGCAACAATTGAGTCTTGGAACCTTTCATCATATACAAATTCACA
CACCAATACACCAATACACCAAATTGTCCCACATACAATCTACTTTCACCCAATATACTCTTACC
CAAATCCCACATCCCATACGCCTCACCCACCTACATTCGCTCGTGTCTCCGTTTATATTAATCTA
CTATTAGCTTAGTCCTTCTTGATCTCCTCGATCTCCTCGGCCTCCTCGCCCTCCTTGTCGCCAGC
GTTGCCAATCTTCTCGGCAATGTCGCTGATGTCAAAGTCCTCGTCGCCGCCAGCACCGCCAGCAC
CGCCCATCTGCTGCATCAACTTGGCGAAGTCCATGCCGCCAGCACCACCGGCACCGCCGGCACCG
CCAAGCATCGACGAAAAGTCCATGCCGCCAGGGCCACCAGCACCA
Right flanking sequence: Indices 401154 -- 401653
TCGTCCTCGTCGTCAGCGTGCTCGTCCTGCTCGTCCTCGTCGACCCAGCGGTCAAAGTCGGTCTT
GAGCGAGGGGTGCTTAAGCTTGTCCTTGGTCAAACGGGGCCAGTACTCCTCCTGGGCCTTGGCCT
TTCTCAACACGAACAAAATGTGCGAGCCGACCTTGGTGTTGTACTTCAGCTCCTTGGTGTCAATG
GCCTCGTAGAACTCGAGGCTGAACCGCCACTTGATGCCCGAGTCGTCGGAAGCGTCGGCAGCGAA
CTTGAGCGAAGTCTCGGTCAAGTCGATCTCCAAGTTCTTAGGGTCGGACACCTCGACAGTGAGGT
AGACAATGTTCTTGGCGGCATCGTCGGCGTTGGATCTCTGGGCCCACTTGACAATGGGGTGCAAC
GTCTTGGTAGTTTCGGGGTCAACAGCCATGGTGTTCGTTGTCGGGCAAGGTTGTCGGGCTATTTA
TTTGCTGGCTCGCGTGGGGGGCGATCCAGGGACGATCACGTGGTG
Found at i:410622 original size:36 final size:37
Alignment explanation
Indices: 410582--410678 Score: 97
Period size: 39 Copynumber: 2.6 Consensus size: 37
410572 CAATGGCAGC
* * *
410582 GAGAGCACTGGAGGCAGCGAAAGCAAC-GGTGCCAAT
1 GAGAGCACCGGAGGCAACGAAACCAACGGGTGCCAAT
* *
410618 GAGAGCACCGGTGGCAATGAAACCAACGGTGGTGCCAAT
1 GAGAGCACCGGAGGCAACGAAACCAAC-G-GGTGCCAAT
* * *
410657 GAGAGCAACGGCGACAACGAAA
1 GAGAGCACCGGAGGCAACGAAA
410679 GCAGTGGTAT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
36 22 0.45
39 27 0.55
ACGTcount: A:0.35, C:0.23, G:0.34, T:0.08
Consensus pattern (37 bp):
GAGAGCACCGGAGGCAACGAAACCAACGGGTGCCAAT
Left flanking sequence: Indices 410082 -- 410581
ACCACGCGGCCGACTTTGGCCACACCGCCATCGAGTTGCCGTGCCACCACGTGTTTGGCCAGTCG
TGTCTCGCGGAGTGGCTCAAGGAGCACGCCACCTGTCCGTTGTGCCGCGAGAAGCTCGAGGAGCG
CGCTCCGTCACACAACCCCGGGTTCCAGTTCTTGCTGATTCCGCCAGACTTCAACCTTGGCGGCG
AAGGCAACCGCGAGGCGCCGCGGGCTCCGTCGCCGCCCCTGGAGACTCCCGCTCCCACCACGTCC
ACCGCACGGGTGTTGCGCAGCTTGTGGCCGTTTGGCCTGGCTGGACGCAGTCCGTTGACGCAGCA
GCTGGTGGTGTTCCCTGCTGGGGTGGCGCTGAGACGCACGGCCGGCGGCGTGGAAACCACCAACG
ACGAGAACTACCACCGGCTCATGCGTGACGAGCTCTTGAGCCGTCTCCACCAGCGCCGCCAGAAT
AACGCTCGTGAAAACGACGGCGGAAATGGCGAGAGCAATGGCAGC
Right flanking sequence: Indices 410679 -- 411178
GCAGTGGTATCACCAATGAGAGCAGCGGTGACAACGGTGACAACGGCGACAACAATAGCTAGTGC
CTTCAACCGAGTTCCGCGGCTCCGCGACGAAATTCATGATTCATAGATATATATACCCAATAAAC
TAGCACTAAACGGGGTAGGAGACAGGCGACTGCGTTGGTACATGTGACGCATGTCTTTTACGGTG
TATCGGGAGATGAAGTCAAATAGTGCCCTTCTATTACTTACAACACACTTAACTTTCATCCATAC
AAAGGTAGTCTCTCTCCAAACAGAGTACTCAAAACTTCAATGGTGAACTGGACACCATAATTCCA
TGGTAGATTACCCATACTGTTGATGGATGTCCAGTCCAACTACAACCCCCTTTTCTCTATATCAG
CATTCTATATCTATCCTAACCAAAGAACTTGGCGTACTGCTGCTTTTGCGCGTTCTTCTTGTTCG
CCACAAGCGTCCGGGCCCGTTCGAGCTCGCGGGCGATGCCAGCGT
Found at i:410624 original size:18 final size:18
Alignment explanation
Indices: 410603--410667 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
410593 AGGCAGCGAA
410603 AGCAACGGTGCCAATGAG
1 AGCAACGGTGCCAATGAG
* * *
410621 AGCACCGGTGGCAATGAA
1 AGCAACGGTGCCAATGAG
*
410639 ACCAACGGTGGTGCCAATGAG
1 AGCAAC---GGTGCCAATGAG
410660 AGCAACGG
1 AGCAACGG
410668 CGACAACGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
18 21 0.58
21 15 0.42
ACGTcount: A:0.32, C:0.23, G:0.34, T:0.11
Consensus pattern (18 bp):
AGCAACGGTGCCAATGAG
Left flanking sequence: Indices 410103 -- 410602
ACACCGCCATCGAGTTGCCGTGCCACCACGTGTTTGGCCAGTCGTGTCTCGCGGAGTGGCTCAAG
GAGCACGCCACCTGTCCGTTGTGCCGCGAGAAGCTCGAGGAGCGCGCTCCGTCACACAACCCCGG
GTTCCAGTTCTTGCTGATTCCGCCAGACTTCAACCTTGGCGGCGAAGGCAACCGCGAGGCGCCGC
GGGCTCCGTCGCCGCCCCTGGAGACTCCCGCTCCCACCACGTCCACCGCACGGGTGTTGCGCAGC
TTGTGGCCGTTTGGCCTGGCTGGACGCAGTCCGTTGACGCAGCAGCTGGTGGTGTTCCCTGCTGG
GGTGGCGCTGAGACGCACGGCCGGCGGCGTGGAAACCACCAACGACGAGAACTACCACCGGCTCA
TGCGTGACGAGCTCTTGAGCCGTCTCCACCAGCGCCGCCAGAATAACGCTCGTGAAAACGACGGC
GGAAATGGCGAGAGCAATGGCAGCGAGAGCACTGGAGGCAGCGAA
Right flanking sequence: Indices 410668 -- 411167
CGACAACGAAAGCAGTGGTATCACCAATGAGAGCAGCGGTGACAACGGTGACAACGGCGACAACA
ATAGCTAGTGCCTTCAACCGAGTTCCGCGGCTCCGCGACGAAATTCATGATTCATAGATATATAT
ACCCAATAAACTAGCACTAAACGGGGTAGGAGACAGGCGACTGCGTTGGTACATGTGACGCATGT
CTTTTACGGTGTATCGGGAGATGAAGTCAAATAGTGCCCTTCTATTACTTACAACACACTTAACT
TTCATCCATACAAAGGTAGTCTCTCTCCAAACAGAGTACTCAAAACTTCAATGGTGAACTGGACA
CCATAATTCCATGGTAGATTACCCATACTGTTGATGGATGTCCAGTCCAACTACAACCCCCTTTT
CTCTATATCAGCATTCTATATCTATCCTAACCAAAGAACTTGGCGTACTGCTGCTTTTGCGCGTT
CTTCTTGTTCGCCACAAGCGTCCGGGCCCGTTCGAGCTCGCGGGC
Found at i:410656 original size:21 final size:21
Alignment explanation
Indices: 410627--410667 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
410617 TGAGAGCACC
*
410627 GGTGGCAATGAAACCAACGGT
1 GGTGCCAATGAAACCAACGGT
* *
410648 GGTGCCAATGAGAGCAACGG
1 GGTGCCAATGAAACCAACGG
410668 CGACAACGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.20, G:0.37, T:0.12
Consensus pattern (21 bp):
GGTGCCAATGAAACCAACGGT
Left flanking sequence: Indices 410127 -- 410626
ACCACGTGTTTGGCCAGTCGTGTCTCGCGGAGTGGCTCAAGGAGCACGCCACCTGTCCGTTGTGC
CGCGAGAAGCTCGAGGAGCGCGCTCCGTCACACAACCCCGGGTTCCAGTTCTTGCTGATTCCGCC
AGACTTCAACCTTGGCGGCGAAGGCAACCGCGAGGCGCCGCGGGCTCCGTCGCCGCCCCTGGAGA
CTCCCGCTCCCACCACGTCCACCGCACGGGTGTTGCGCAGCTTGTGGCCGTTTGGCCTGGCTGGA
CGCAGTCCGTTGACGCAGCAGCTGGTGGTGTTCCCTGCTGGGGTGGCGCTGAGACGCACGGCCGG
CGGCGTGGAAACCACCAACGACGAGAACTACCACCGGCTCATGCGTGACGAGCTCTTGAGCCGTC
TCCACCAGCGCCGCCAGAATAACGCTCGTGAAAACGACGGCGGAAATGGCGAGAGCAATGGCAGC
GAGAGCACTGGAGGCAGCGAAAGCAACGGTGCCAATGAGAGCACC
Right flanking sequence: Indices 410668 -- 411167
CGACAACGAAAGCAGTGGTATCACCAATGAGAGCAGCGGTGACAACGGTGACAACGGCGACAACA
ATAGCTAGTGCCTTCAACCGAGTTCCGCGGCTCCGCGACGAAATTCATGATTCATAGATATATAT
ACCCAATAAACTAGCACTAAACGGGGTAGGAGACAGGCGACTGCGTTGGTACATGTGACGCATGT
CTTTTACGGTGTATCGGGAGATGAAGTCAAATAGTGCCCTTCTATTACTTACAACACACTTAACT
TTCATCCATACAAAGGTAGTCTCTCTCCAAACAGAGTACTCAAAACTTCAATGGTGAACTGGACA
CCATAATTCCATGGTAGATTACCCATACTGTTGATGGATGTCCAGTCCAACTACAACCCCCTTTT
CTCTATATCAGCATTCTATATCTATCCTAACCAAAGAACTTGGCGTACTGCTGCTTTTGCGCGTT
CTTCTTGTTCGCCACAAGCGTCCGGGCCCGTTCGAGCTCGCGGGC
Found at i:412274 original size:27 final size:24
Alignment explanation
Indices: 412228--412280 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 24
412218 GATGTAGGAC
412228 AGAGAAGGGAAGGGGAAGGGAAGA
1 AGAGAAGGGAAGGGGAAGGGAAGA
412252 AGAGAAAGGGAAGTAGGGAAGGGAAGA
1 AGAG-AAGGGAAG--GGGAAGGGAAGA
412279 AG
1 AG
412281 GGGAAAAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 4 0.15
25 8 0.31
27 14 0.54
ACGTcount: A:0.47, C:0.00, G:0.51, T:0.02
Consensus pattern (24 bp):
AGAGAAGGGAAGGGGAAGGGAAGA
Left flanking sequence: Indices 411728 -- 412227
TGTAGGTCGACACCCGTTCCACCTCGCGGATCACAGACTTGCCGTGAACCACGTCGCCAAACACC
GTGTACTGGCCCTGGAGCCGCGGCTGAGGGCTCAACGTGATGAAGAACTGCGAGTGGTCGGGGTT
GGCGGCCCCGTTGTCCATGCACACCTTGAAGGGGGCATCCAACGCACCGTCCAAGTTCTCAGCAA
AGTCTGGGTCCACAGCGGCTGGCTCGGGCCGTCCGAGATCCGCGGGCGGGTACTGTGTCCACTCA
CGCGACGCGAGGATCCCGCCCTGGATGCCCAAGTTCTTGATCACCTCGTGGAAGACGGTGCCGTC
GAGCTGGCCGCTGGAGGCGAGCTCTAGGAAACGAGCAGTGGTATGGGGCGCCGCAGCCAGGTCCA
ACTGGACCACGACCCGTCCCGTGGCGGTGTCGCTGATGGCGATGTCCAAGTACACCAGAGGCATA
TCTGTGAGAATGCATAATGCATGGAAAAGGTGCTGGATGTAGGAC
Right flanking sequence: Indices 412281 -- 412780
GGGAAAAGGCGGAAGGAGAGTTGGAAAAGTAGTTTATGGAAAGTAAACCATGAGGTAGAGTCAGC
ATATTGAGACACAATTTGAGTGCTTTCTCGACGCTCTCCCCCTCTATTCTACAGGTTTGCACCCA
AATAATTTCAGAACCCTATAACCACAGTCCCTACCAGAAACAGAAACCTGTTTTAATCCTTCAGT
ACACTCGCAAAACACCGGGCTTACACCCCTACATTATCTCTTATCACATTTTCATCATTCATATC
TACACAAAACGAACTTACAAGTTGGCCTTGTCGGTGATCAACTTGATGGCGGCGTTGTTGATGGC
AATCACGTTTCTCTCCACGACGTGAGTCTGGAAGATAACAGTGTCACCCTTCTTCCAGGCCTTGA
CCTTCAAGGTCTCACCGGGGAAGACAACACCAGTGAATCTGGCCTTGATCTCGTTGAAAGGACCG
AACTTGTCCAACAAGATCTTGGCAGACACACCGTAGGTGCACATA
Found at i:418412 original size:12 final size:12
Alignment explanation
Indices: 418395--418425 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
418385 GTGCGGTTGG
418395 ACTCGCAGTTCA
1 ACTCGCAGTTCA
418407 ACTCGCAGTTCA
1 ACTCGCAGTTCA
418419 ACTCGCA
1 ACTCGCA
418426 CGTGTCGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (12 bp):
ACTCGCAGTTCA
Left flanking sequence: Indices 417895 -- 418394
GGTGTGGTTGGTGTTGTACTTGTGCGGTATCCTCGTCACCTACCTGGCGTTGATGACGGGCGAGC
AGGGCATGGACTTGTTCAAGCTGATCCGCCCGCTTGTGGTGTCGTTGACCGGAGGCCTGGCGTTG
CGCGAGCTTCAGGTGTTGCGTAAGGAGCTCGCCGAGGAGATTACCGATGTCCTCAACACCCTCGG
GCCCCAGTTGTTCCCCAACGACTTCAACTTGTTGGAGATGGGCGACAAGCTCTCGCTCGACAAAA
AGAAACCCGTTTACGTGGACCTGGACGACGAGGAGGAGCACAAAACCGACGAGTTGCGTCGGCGG
CGTCGCCAGGCGCGTCGGCACCGCCGCACGCCGCTGGGGTTGTCGGAGGACCTGCGGTCGGCGCT
GGTGTCCGACGGTGTGTCGTTGATGAACTCGGACAACTCGCTTACCAACATCCCCATGTTCAGCG
ATTACCACTTGAGCCAGAACGCCAAGAACCTGAACGTGCGGTTGG
Right flanking sequence: Indices 418426 -- 418925
CGTGTCGCTTGCCGACGACTACAACAACGGTGGGGTGTTGACGCCCCGGCCCCACTTGCTGCGGG
ACAACCTGGGTGTCGAGCTTAATTTTAGCCCGCGGCAGAAGTTGAGCGACCGGATCCGGCAGAAG
ATGAAGGAGGAGCGCCAGCGACAGAAGGAAGAGTGAAGCATAGTGAATAAATAATTGAGAAAGCG
AACTTTACGGAGTCTGAAGAGTAAGTTTCAAGAGCTAGAAGGTGCTAGAGTAGAAAGATCTTTGA
GGAGAGTACGATATATGAACACGTTATGAGCCCTCCAACAAAGTACAACGTTTTGAGCGTTGGCA
CATGTACCTTTCCCACTCTGGCTCGCTAGTTGAGCCGCACAGAGAGAAGACCAACCAGGTCCACT
AACCTACACACCAATGGCGAAGGAAACTCCCCCGAGCCCAACCAATGGCTTCAATGACACTTTAT
AGCACCATCCAACACTCTTTACCCGCCACACCACCTCCTCGTACC
Found at i:434223 original size:18 final size:18
Alignment explanation
Indices: 434193--434242 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
434183 CAAGACCGAC
* *
434193 GACAACACTACTGGTGGT
1 GACAACACCACTGATGGT
*
434211 GACAAGACCACTGATGGT
1 GACAACACCACTGATGGT
434229 GACAACACCACTGA
1 GACAACACCACTGA
434243 CGACAACACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.34, C:0.26, G:0.24, T:0.16
Consensus pattern (18 bp):
GACAACACCACTGATGGT
Left flanking sequence: Indices 433693 -- 434192
TCGTAGTAATGCTCCCTCTTCTCTTGTTGCTTGCCACCGCTTGTGTGGGCCAGCCTTTGAAGCGC
GACCAGGTGGTGTGTTCCACCACTACTGTCACTAAGACATACACCCCGACATACTGGGAGTCCTA
CGATGTTTGGGTGACGTCGTTGCCGTGTCTGGACAGCTCTTGTATGGAGTCCCTGGACGCTGTGC
CCACGGATGACATCAACACGGGGGATGATACCACTGGTGGCTCTATCGACTTCACCAGAACCCAG
ACGTGGCCCTGCGAGGACGGCAGTGACACCTGCACTGAGGTGCCCCCTCCTCCTCTGCTGAACCC
TGTACCGACTGCTACTGAAGCCACTACTGACGACAACACTGAGACTGACGGTGGCTTCACTTCCA
CTACCAGCTACACCAGAACTCAGACGTGGCCCTGTCAGGATGACAGTGACTCTTGCACTGAGGTG
GCTCCTCCTCCTCTGCTGAACCCTGTGCCCACTGACAAGACCGAC
Right flanking sequence: Indices 434243 -- 434742
CGACAACACTGAGACTGACGGTGGCTTCACTTCCACTACCAGCTACACCAGAACTCAGACGTGGC
CCTGTCAAGACGACAGTGACTCTTGCACTGAGGTGGCACCTCCTCCTCTGCTGAAGCCCGTCCCT
ACTGACGACACCACCACTGACGGTGACAACTTTACTACTGGTAACGACGACACTGAGACTGACGG
TGGCTTCACTTCCACTACCAGCTACACCAGAACACAAACGTGGCCCTGTCAAGATGACAGTGACT
CGTGCACTGAGGTGGCTCCTCCTCCTCTGCTGAACCCTGTGCCCACTGATAAGACCGACGACAAC
ACTACTGGCGGTGACAAGACCACTGATGGTGACAACACTACTGACGACAACACTGAGACTGACGG
TGGCTTCACTTCCACTACCAGCTACACCAGAACTCAGACGTGGCCCTGTCAAGACGACAGTGACT
CTTGCACTGAGGTAGCACCTCCTCCTCTGCTGAACCCTGTGCCTA
Found at i:434610 original size:18 final size:18
Alignment explanation
Indices: 434562--434613 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
434552 TAAGACCGAC
*
434562 GACAACACTACTGGCGGT
1 GACAACACTACTGACGGT
* * *
434580 GACAAGACCACTGATGGT
1 GACAACACTACTGACGGT
434598 GACAACACTACTGACG
1 GACAACACTACTGACG
434614 ACAACACTGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.15
Consensus pattern (18 bp):
GACAACACTACTGACGGT
Left flanking sequence: Indices 434062 -- 434561
CTGACGGTGGCTTCACTTCCACTACCAGCTACACCAGAACTCAGACGTGGCCCTGTCAGGATGAC
AGTGACTCTTGCACTGAGGTGGCTCCTCCTCCTCTGCTGAACCCTGTGCCCACTGACAAGACCGA
CGACAACACTACTGGTGGTGACAAGACCACTGATGGTGACAACACCACTGACGACAACACTGAGA
CTGACGGTGGCTTCACTTCCACTACCAGCTACACCAGAACTCAGACGTGGCCCTGTCAAGACGAC
AGTGACTCTTGCACTGAGGTGGCACCTCCTCCTCTGCTGAAGCCCGTCCCTACTGACGACACCAC
CACTGACGGTGACAACTTTACTACTGGTAACGACGACACTGAGACTGACGGTGGCTTCACTTCCA
CTACCAGCTACACCAGAACACAAACGTGGCCCTGTCAAGATGACAGTGACTCGTGCACTGAGGTG
GCTCCTCCTCCTCTGCTGAACCCTGTGCCCACTGATAAGACCGAC
Right flanking sequence: Indices 434614 -- 435113
ACAACACTGAGACTGACGGTGGCTTCACTTCCACTACCAGCTACACCAGAACTCAGACGTGGCCC
TGTCAAGACGACAGTGACTCTTGCACTGAGGTAGCACCTCCTCCTCTGCTGAACCCTGTGCCTAC
CGACAAGACTGATGACGACAACACTACTGACGACAACACCGAGACTGGCGGTGATGTTACGTCGG
GTGGTTTCACGAGCGTCACCAACACCATGTCCTGGCCTTGTGAGGATGGCGGCGACACCTGCACT
GAGGTGCCTCCTCCTCCTCTGCTGAACCCGGTGCCCACTGACGACATTAAGACGAGTCACGAGGA
GACCACCCCCACGTTGACCTGGCCATGCGACGACGGAGAGCACACCTGCCCTGAGCCCACGTCTC
CCCCTACCACGATGACGGAAAAGCCCCCTCCCACCGGCCCCCCTACTGACGAATTCCCGCCTCCC
AAACCCACCGGTCGTCCTCCTCACCCGCACCCTCACCCGCACCCT
Found at i:435105 original size:6 final size:6
Alignment explanation
Indices: 435087--435171 Score: 116
Period size: 6 Copynumber: 14.2 Consensus size: 6
435077 CGGTCGTCCT
* * * *
435087 CCTCAC CCGCAC CCTCAC CCGCAC CCTCAT CCTCAC CCTCAC CCGCAC
1 CCTCAC CCTCAC CCTCAC CCTCAC CCTCAC CCTCAC CCTCAC CCTCAC
* *
435135 CCTCAC CCTCAC CCGCAC CCGCAC CCTCAC CCTCAC C
1 CCTCAC CCTCAC CCTCAC CCTCAC CCTCAC CCTCAC C
435172 GGCCTCCTCG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 69 1.00
ACGTcount: A:0.16, C:0.66, G:0.06, T:0.12
Consensus pattern (6 bp):
CCTCAC
Left flanking sequence: Indices 434587 -- 435086
CCACTGATGGTGACAACACTACTGACGACAACACTGAGACTGACGGTGGCTTCACTTCCACTACC
AGCTACACCAGAACTCAGACGTGGCCCTGTCAAGACGACAGTGACTCTTGCACTGAGGTAGCACC
TCCTCCTCTGCTGAACCCTGTGCCTACCGACAAGACTGATGACGACAACACTACTGACGACAACA
CCGAGACTGGCGGTGATGTTACGTCGGGTGGTTTCACGAGCGTCACCAACACCATGTCCTGGCCT
TGTGAGGATGGCGGCGACACCTGCACTGAGGTGCCTCCTCCTCCTCTGCTGAACCCGGTGCCCAC
TGACGACATTAAGACGAGTCACGAGGAGACCACCCCCACGTTGACCTGGCCATGCGACGACGGAG
AGCACACCTGCCCTGAGCCCACGTCTCCCCCTACCACGATGACGGAAAAGCCCCCTCCCACCGGC
CCCCCTACTGACGAATTCCCGCCTCCCAAACCCACCGGTCGTCCT
Right flanking sequence: Indices 435172 -- 435671
GGCCTCCTCGTCCCCACTACCGGCCGGGCCCGTTCTACTGGGTCACCTGCACCTGCTTCGGCTTC
TGGTGTAACTAGTCTTTTTATACCTTTACCCGTAGTGGCGTCCGCGTTGGCGGAGCCCTAAATAC
TCTATTAAATGAACTATGTATTCACCCGCGCCTTCGCAAGCTCCAACGCCTGGCGCAACTGGTCG
AGGTTGATGACATTGTCCACGTCCCCGTTCACCATCTGCACCCGTTTCAACCGGCCCAGGGTGTC
GGCAGTCACCAGGATGCGCGACATCACCGCAGCCTCCTCGGGCTCGCCCGCCAAGTCGCAGAGAA
GGGTGTTGTCAAACACCCCGAAGTTCAGCAGCTGGCCGCCGTCGCCGAGGGCAATGGGCTCCATG
AGCTCGTGGTTGGTGTCGAGATTCAACGTGCCCGCCAGACTCAGCACCACCCCGCGCTTGGTGGA
CCGTCGCAGTCGCACCACCTTGGTGATGTTGGTCAGGTCCAGCAC
Found at i:435114 original size:24 final size:24
Alignment explanation
Indices: 435087--435171 Score: 143
Period size: 24 Copynumber: 3.5 Consensus size: 24
435077 CGGTCGTCCT
*
435087 CCTCACCCGCACCCTCACCCGCAC
1 CCTCACCCTCACCCTCACCCGCAC
*
435111 CCTCATCCTCACCCTCACCCGCAC
1 CCTCACCCTCACCCTCACCCGCAC
*
435135 CCTCACCCTCACCCGCACCCGCAC
1 CCTCACCCTCACCCTCACCCGCAC
435159 CCTCACCCTCACC
1 CCTCACCCTCACC
435172 GGCCTCCTCG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.16, C:0.66, G:0.06, T:0.12
Consensus pattern (24 bp):
CCTCACCCTCACCCTCACCCGCAC
Left flanking sequence: Indices 434587 -- 435086
CCACTGATGGTGACAACACTACTGACGACAACACTGAGACTGACGGTGGCTTCACTTCCACTACC
AGCTACACCAGAACTCAGACGTGGCCCTGTCAAGACGACAGTGACTCTTGCACTGAGGTAGCACC
TCCTCCTCTGCTGAACCCTGTGCCTACCGACAAGACTGATGACGACAACACTACTGACGACAACA
CCGAGACTGGCGGTGATGTTACGTCGGGTGGTTTCACGAGCGTCACCAACACCATGTCCTGGCCT
TGTGAGGATGGCGGCGACACCTGCACTGAGGTGCCTCCTCCTCCTCTGCTGAACCCGGTGCCCAC
TGACGACATTAAGACGAGTCACGAGGAGACCACCCCCACGTTGACCTGGCCATGCGACGACGGAG
AGCACACCTGCCCTGAGCCCACGTCTCCCCCTACCACGATGACGGAAAAGCCCCCTCCCACCGGC
CCCCCTACTGACGAATTCCCGCCTCCCAAACCCACCGGTCGTCCT
Right flanking sequence: Indices 435172 -- 435671
GGCCTCCTCGTCCCCACTACCGGCCGGGCCCGTTCTACTGGGTCACCTGCACCTGCTTCGGCTTC
TGGTGTAACTAGTCTTTTTATACCTTTACCCGTAGTGGCGTCCGCGTTGGCGGAGCCCTAAATAC
TCTATTAAATGAACTATGTATTCACCCGCGCCTTCGCAAGCTCCAACGCCTGGCGCAACTGGTCG
AGGTTGATGACATTGTCCACGTCCCCGTTCACCATCTGCACCCGTTTCAACCGGCCCAGGGTGTC
GGCAGTCACCAGGATGCGCGACATCACCGCAGCCTCCTCGGGCTCGCCCGCCAAGTCGCAGAGAA
GGGTGTTGTCAAACACCCCGAAGTTCAGCAGCTGGCCGCCGTCGCCGAGGGCAATGGGCTCCATG
AGCTCGTGGTTGGTGTCGAGATTCAACGTGCCCGCCAGACTCAGCACCACCCCGCGCTTGGTGGA
CCGTCGCAGTCGCACCACCTTGGTGATGTTGGTCAGGTCCAGCAC
Found at i:440114 original size:18 final size:18
Alignment explanation
Indices: 440057--440152 Score: 104
Period size: 18 Copynumber: 5.3 Consensus size: 18
440047 GAGCTTAATA
**
440057 TAGTATTCAAACCTGGCC
1 TAGTATTCAAACCTGATC
* * * *
440075 TAATATTCGAACCTAATA
1 TAGTATTCAAACCTGATC
440093 TAGTATTCAAACCTGATC
1 TAGTATTCAAACCTGATC
*
440111 TAGTTTTCAAACCTGATC
1 TAGTATTCAAACCTGATC
*
440129 TAGT-TACCAAACCTGATC
1 TAGTAT-TCAAACCTGATC
440147 TAGTAT
1 TAGTAT
440153 CGAATTAAGT
Statistics
Matches: 64, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
17 1 0.02
18 62 0.97
19 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TAGTATTCAAACCTGATC
Left flanking sequence: Indices 439557 -- 440056
GGCGTCGACGTACAAGTGGTTGAAGTAAACAGCGTCCCAGGTGATGAATTTGTCGAGCACCCGGT
GGACCCACGGGGCTAGCTGGGGCTGGGCTGCGGCCACGAGCTGCAGCGAGGTGTCAAACTGGAGC
GGAGTGACGTAGACGGTGGCCAATTGCACCGCCTTGACGGCCGCAAAGAGCACCGCTAAGTTCAT
CGAGGTGCGTTGGTGCGTGTAGCGAAAACAATCAGATGGTGCGAAGAGACGGGAAGGTGGGATTT
GGATGGGAAGGGTTGAGTGTTGCTGAGTGGGTTGATGGGGAAAGAAGGGGAGGTTTGATTGTTTA
AGTTGCTCATTCTACGTGGTGGTGGGTGTGTCTACTCATCGTATATATTGTTCGCTGGCATGCCG
ACATCGTAGGCCAGTTTGGGTGTGGAAAGCGGAGTAGAGAAAGCTCTCTGAATGAGATTCCAACA
ATCTAACGTCAACTGTATCGAGTTGATCCAGTATCGAGCTTAATA
Right flanking sequence: Indices 440153 -- 440652
CGAATTAAGTACTCCAATCTGATCCAGTATTCCAATCTGATCCAGTATTCCAATATGATCTAGTA
TTCGAATTTATTATTCAAATCTGATCCAGTATTCCAATCTGATCTAGTGTTCCAGTCTGATCTAG
TACTCCATTCTGATCCAGTATTCGAACCAGAGTCTCAAGCGACAAGGTGGTGGACGTGCTCAGAA
GCAACTTCACATCCTTTCCACACATTCCCTTCTCTCACCGTCTTCTCTCTTCTCCCATCCTCATC
CTACCAATTACACTATGTTATTTTGTTAACGCGATAACGAAAACTACAGGAGGTCGTACGGGGTC
ATAGACATGCAAATTAAGGGCCCTGGGGCGGGTAGTACTGGTTCGGGTGCTGCGGCGGCTGCGGC
GGCTGCTGCTGTTGCTGCTGCTGCTGCTGGAACTGCTGCTGCTGTTGCATGTACAACTGGTACTG
CTGTAACTGTTCCGGGGTGTACTGCTGGTACTGCTGGCCCTGCCC
Found at i:440186 original size:18 final size:18
Alignment explanation
Indices: 440160--440305 Score: 149
Period size: 18 Copynumber: 8.4 Consensus size: 18
440150 TATCGAATTA
*
440160 AGTACTCCAATCTGATCC
1 AGTATTCCAATCTGATCC
440178 AGTATTCCAATCTGATCC
1 AGTATTCCAATCTGATCC
* *
440196 AGTATTCCAATATGATCT
1 AGTATTCCAATCTGATCC
*
440214 AGTATTCGAAT-T--T--
1 AGTATTCCAATCTGATCC
* *
440227 ATTATTCAAATCTGATCC
1 AGTATTCCAATCTGATCC
*
440245 AGTATTCCAATCTGATCT
1 AGTATTCCAATCTGATCC
* * *
440263 AGTGTTCCAGTCTGATCT
1 AGTATTCCAATCTGATCC
* *
440281 AGTACTCCATTCTGATCC
1 AGTATTCCAATCTGATCC
440299 AGTATTC
1 AGTATTC
440306 GAACCAGAGT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
13 9 0.08
14 1 0.01
15 1 0.01
16 1 0.01
17 1 0.01
18 94 0.88
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.37
Consensus pattern (18 bp):
AGTATTCCAATCTGATCC
Left flanking sequence: Indices 439660 -- 440159
AGCTGCAGCGAGGTGTCAAACTGGAGCGGAGTGACGTAGACGGTGGCCAATTGCACCGCCTTGAC
GGCCGCAAAGAGCACCGCTAAGTTCATCGAGGTGCGTTGGTGCGTGTAGCGAAAACAATCAGATG
GTGCGAAGAGACGGGAAGGTGGGATTTGGATGGGAAGGGTTGAGTGTTGCTGAGTGGGTTGATGG
GGAAAGAAGGGGAGGTTTGATTGTTTAAGTTGCTCATTCTACGTGGTGGTGGGTGTGTCTACTCA
TCGTATATATTGTTCGCTGGCATGCCGACATCGTAGGCCAGTTTGGGTGTGGAAAGCGGAGTAGA
GAAAGCTCTCTGAATGAGATTCCAACAATCTAACGTCAACTGTATCGAGTTGATCCAGTATCGAG
CTTAATATAGTATTCAAACCTGGCCTAATATTCGAACCTAATATAGTATTCAAACCTGATCTAGT
TTTCAAACCTGATCTAGTTACCAAACCTGATCTAGTATCGAATTA
Right flanking sequence: Indices 440306 -- 440805
GAACCAGAGTCTCAAGCGACAAGGTGGTGGACGTGCTCAGAAGCAACTTCACATCCTTTCCACAC
ATTCCCTTCTCTCACCGTCTTCTCTCTTCTCCCATCCTCATCCTACCAATTACACTATGTTATTT
TGTTAACGCGATAACGAAAACTACAGGAGGTCGTACGGGGTCATAGACATGCAAATTAAGGGCCC
TGGGGCGGGTAGTACTGGTTCGGGTGCTGCGGCGGCTGCGGCGGCTGCTGCTGTTGCTGCTGCTG
CTGCTGGAACTGCTGCTGCTGTTGCATGTACAACTGGTACTGCTGTAACTGTTCCGGGGTGTACT
GCTGGTACTGCTGGCCCTGCCCGTAGGGGTACTGGCGCTGGTGGGCGGCGCCCTGCGGGTGGCCC
TGGCCCTGCGGGTGGCCCTGGTGGCCCTGGCCCGCCTGCTGGTAGTACTGCTGCTGCTGGTACTG
CTGCTGCTGCTGGTACTGCGGGTAGTACTGCTGCTGGGGCGGCTG
Found at i:440244 original size:67 final size:66
Alignment explanation
Indices: 440142--440284 Score: 205
Period size: 67 Copynumber: 2.2 Consensus size: 66
440132 TTACCAAACC
*
440142 TGATCTAGTATCGAATTAAGTACTCCAATCTGATCCAGTATTCCAATCTGATCCAGTATTCCAAT
1 TGATCTAGTATCGAATTAAGTACTCAAATCTGATCCAGTATTCCAATCTGATCCAGTATTCCAAT
440207 A
66 A
* * * * * *
440208 TGATCTAGTATTCGAATTTATTATTCAAATCTGATCCAGTATTCCAATCTGATCTAGTGTTCCAG
1 TGATCTAGTA-TCGAATTAAGTACTCAAATCTGATCCAGTATTCCAATCTGATCCAGTATTCCAA
*
440273 TC
65 TA
440275 TGATCTAGTA
1 TGATCTAGTA
440285 CTCCATTCTG
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
66 10 0.15
67 58 0.85
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.37
Consensus pattern (66 bp):
TGATCTAGTATCGAATTAAGTACTCAAATCTGATCCAGTATTCCAATCTGATCCAGTATTCCAAT
A
Left flanking sequence: Indices 439642 -- 440141
GGCTGGGCTGCGGCCACGAGCTGCAGCGAGGTGTCAAACTGGAGCGGAGTGACGTAGACGGTGGC
CAATTGCACCGCCTTGACGGCCGCAAAGAGCACCGCTAAGTTCATCGAGGTGCGTTGGTGCGTGT
AGCGAAAACAATCAGATGGTGCGAAGAGACGGGAAGGTGGGATTTGGATGGGAAGGGTTGAGTGT
TGCTGAGTGGGTTGATGGGGAAAGAAGGGGAGGTTTGATTGTTTAAGTTGCTCATTCTACGTGGT
GGTGGGTGTGTCTACTCATCGTATATATTGTTCGCTGGCATGCCGACATCGTAGGCCAGTTTGGG
TGTGGAAAGCGGAGTAGAGAAAGCTCTCTGAATGAGATTCCAACAATCTAACGTCAACTGTATCG
AGTTGATCCAGTATCGAGCTTAATATAGTATTCAAACCTGGCCTAATATTCGAACCTAATATAGT
ATTCAAACCTGATCTAGTTTTCAAACCTGATCTAGTTACCAAACC
Right flanking sequence: Indices 440285 -- 440784
CTCCATTCTGATCCAGTATTCGAACCAGAGTCTCAAGCGACAAGGTGGTGGACGTGCTCAGAAGC
AACTTCACATCCTTTCCACACATTCCCTTCTCTCACCGTCTTCTCTCTTCTCCCATCCTCATCCT
ACCAATTACACTATGTTATTTTGTTAACGCGATAACGAAAACTACAGGAGGTCGTACGGGGTCAT
AGACATGCAAATTAAGGGCCCTGGGGCGGGTAGTACTGGTTCGGGTGCTGCGGCGGCTGCGGCGG
CTGCTGCTGTTGCTGCTGCTGCTGCTGGAACTGCTGCTGCTGTTGCATGTACAACTGGTACTGCT
GTAACTGTTCCGGGGTGTACTGCTGGTACTGCTGGCCCTGCCCGTAGGGGTACTGGCGCTGGTGG
GCGGCGCCCTGCGGGTGGCCCTGGCCCTGCGGGTGGCCCTGGTGGCCCTGGCCCGCCTGCTGGTA
GTACTGCTGCTGCTGGTACTGCTGCTGCTGCTGGTACTGCGGGTA
Found at i:440550 original size:3 final size:3
Alignment explanation
Indices: 440525--440586 Score: 52
Period size: 3 Copynumber: 20.7 Consensus size: 3
440515 CTGGTTCGGG
* * * * * *
440525 TGC TGC GGC GGC TGC GGC GGC TGC TGC TGT TGC TGC TGC TGC TGC TGG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
**
440573 AAC TGC TGC TGC TG
1 TGC TGC TGC TGC TG
440587 TTGCATGTAC
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.03, C:0.29, G:0.40, T:0.27
Consensus pattern (3 bp):
TGC
Left flanking sequence: Indices 440025 -- 440524
TGTATCGAGTTGATCCAGTATCGAGCTTAATATAGTATTCAAACCTGGCCTAATATTCGAACCTA
ATATAGTATTCAAACCTGATCTAGTTTTCAAACCTGATCTAGTTACCAAACCTGATCTAGTATCG
AATTAAGTACTCCAATCTGATCCAGTATTCCAATCTGATCCAGTATTCCAATATGATCTAGTATT
CGAATTTATTATTCAAATCTGATCCAGTATTCCAATCTGATCTAGTGTTCCAGTCTGATCTAGTA
CTCCATTCTGATCCAGTATTCGAACCAGAGTCTCAAGCGACAAGGTGGTGGACGTGCTCAGAAGC
AACTTCACATCCTTTCCACACATTCCCTTCTCTCACCGTCTTCTCTCTTCTCCCATCCTCATCCT
ACCAATTACACTATGTTATTTTGTTAACGCGATAACGAAAACTACAGGAGGTCGTACGGGGTCAT
AGACATGCAAATTAAGGGCCCTGGGGCGGGTAGTACTGGTTCGGG
Right flanking sequence: Indices 440587 -- 441086
TTGCATGTACAACTGGTACTGCTGTAACTGTTCCGGGGTGTACTGCTGGTACTGCTGGCCCTGCC
CGTAGGGGTACTGGCGCTGGTGGGCGGCGCCCTGCGGGTGGCCCTGGCCCTGCGGGTGGCCCTGG
TGGCCCTGGCCCGCCTGCTGGTAGTACTGCTGCTGCTGGTACTGCTGCTGCTGCTGGTACTGCGG
GTAGTACTGCTGCTGGGGCGGCTGCTGCCCGTAGTACTGCTGCTGGTACCCCTGCTGGTACACGT
GGGCCGGCTGGTGGTACACCGGCTGCTGCACCGGCGCCTGGGCCGGCTGGGCGTACCCGTACCCC
GCGGCAAACCGCTTGGGCGCCGGCGGCACGTGTCCTTCCTGCTTGCGCTTGTTTTTGTTCTTGCG
CTTGCGCTTGGCCGCCGCCTCGAGCTCGTCGTCGCTGAACTCCTGCTCGTCCTCGGGGAGCTCTT
CGTCGTGGAAGTTCAGCGCGTCGGTGCCCTTGCTCTTCAAGTTGT
Found at i:440701 original size:18 final size:18
Alignment explanation
Indices: 440680--440716 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
440670 GGTGGGCGGC
440680 GCCCTGCGGGTGGCCCTG
1 GCCCTGCGGGTGGCCCTG
440698 GCCCTGCGGGTGGCCCTG
1 GCCCTGCGGGTGGCCCTG
440716 G
1 G
440717 TGGCCCTGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.46, T:0.16
Consensus pattern (18 bp):
GCCCTGCGGGTGGCCCTG
Left flanking sequence: Indices 440180 -- 440679
TATTCCAATCTGATCCAGTATTCCAATATGATCTAGTATTCGAATTTATTATTCAAATCTGATCC
AGTATTCCAATCTGATCTAGTGTTCCAGTCTGATCTAGTACTCCATTCTGATCCAGTATTCGAAC
CAGAGTCTCAAGCGACAAGGTGGTGGACGTGCTCAGAAGCAACTTCACATCCTTTCCACACATTC
CCTTCTCTCACCGTCTTCTCTCTTCTCCCATCCTCATCCTACCAATTACACTATGTTATTTTGTT
AACGCGATAACGAAAACTACAGGAGGTCGTACGGGGTCATAGACATGCAAATTAAGGGCCCTGGG
GCGGGTAGTACTGGTTCGGGTGCTGCGGCGGCTGCGGCGGCTGCTGCTGTTGCTGCTGCTGCTGC
TGGAACTGCTGCTGCTGTTGCATGTACAACTGGTACTGCTGTAACTGTTCCGGGGTGTACTGCTG
GTACTGCTGGCCCTGCCCGTAGGGGTACTGGCGCTGGTGGGCGGC
Right flanking sequence: Indices 440717 -- 441216
TGGCCCTGGCCCGCCTGCTGGTAGTACTGCTGCTGCTGGTACTGCTGCTGCTGCTGGTACTGCGG
GTAGTACTGCTGCTGGGGCGGCTGCTGCCCGTAGTACTGCTGCTGGTACCCCTGCTGGTACACGT
GGGCCGGCTGGTGGTACACCGGCTGCTGCACCGGCGCCTGGGCCGGCTGGGCGTACCCGTACCCC
GCGGCAAACCGCTTGGGCGCCGGCGGCACGTGTCCTTCCTGCTTGCGCTTGTTTTTGTTCTTGCG
CTTGCGCTTGGCCGCCGCCTCGAGCTCGTCGTCGCTGAACTCCTGCTCGTCCTCGGGGAGCTCTT
CGTCGTGGAAGTTCAGCGCGTCGGTGCCCTTGCTCTTCAAGTTGTCGGTGTACACCCACTCCAGG
TCCGACACCACGTAGTACACGTCGTGGCCCTTGTACTTTTCAAACTGGCGGAACTCGCCCGGGCT
GTTGAACTTGACCCGGTACAACGGGTGCTGCAACCGCCCGAACGC
Found at i:440751 original size:15 final size:15
Alignment explanation
Indices: 440731--440829 Score: 62
Period size: 15 Copynumber: 6.6 Consensus size: 15
440721 CCTGGCCCGC
440731 CTGCTGGTAGTACTG
1 CTGCTGGTAGTACTG
* *
440746 CTGCTGCTGGTACTG
1 CTGCTGGTAGTACTG
*
440761 CTGCTGCTGCTGGTACTG
1 CTGCTG--G-TAGTACTG
440779 C-G--GGTAGTACTG
1 CTGCTGGTAGTACTG
* **
440791 CTGCTGG-GGCGGCTG
1 CTGCTGGTAG-TACTG
**
440806 CTGCCCGTAGTACTG
1 CTGCTGGTAGTACTG
440821 CTGCTGGTA
1 CTGCTGGTA
440830 CCCCTGCTGG
Statistics
Matches: 62, Mismatches: 14, Indels: 16
0.67 0.15 0.17
Matches are distributed among these distances:
12 8 0.13
13 2 0.03
14 1 0.02
15 40 0.65
16 1 0.02
17 1 0.02
18 9 0.15
ACGTcount: A:0.09, C:0.25, G:0.36, T:0.29
Consensus pattern (15 bp):
CTGCTGGTAGTACTG
Left flanking sequence: Indices 440231 -- 440730
TTCAAATCTGATCCAGTATTCCAATCTGATCTAGTGTTCCAGTCTGATCTAGTACTCCATTCTGA
TCCAGTATTCGAACCAGAGTCTCAAGCGACAAGGTGGTGGACGTGCTCAGAAGCAACTTCACATC
CTTTCCACACATTCCCTTCTCTCACCGTCTTCTCTCTTCTCCCATCCTCATCCTACCAATTACAC
TATGTTATTTTGTTAACGCGATAACGAAAACTACAGGAGGTCGTACGGGGTCATAGACATGCAAA
TTAAGGGCCCTGGGGCGGGTAGTACTGGTTCGGGTGCTGCGGCGGCTGCGGCGGCTGCTGCTGTT
GCTGCTGCTGCTGCTGGAACTGCTGCTGCTGTTGCATGTACAACTGGTACTGCTGTAACTGTTCC
GGGGTGTACTGCTGGTACTGCTGGCCCTGCCCGTAGGGGTACTGGCGCTGGTGGGCGGCGCCCTG
CGGGTGGCCCTGGCCCTGCGGGTGGCCCTGGTGGCCCTGGCCCGC
Right flanking sequence: Indices 440830 -- 441329
CCCCTGCTGGTACACGTGGGCCGGCTGGTGGTACACCGGCTGCTGCACCGGCGCCTGGGCCGGCT
GGGCGTACCCGTACCCCGCGGCAAACCGCTTGGGCGCCGGCGGCACGTGTCCTTCCTGCTTGCGC
TTGTTTTTGTTCTTGCGCTTGCGCTTGGCCGCCGCCTCGAGCTCGTCGTCGCTGAACTCCTGCTC
GTCCTCGGGGAGCTCTTCGTCGTGGAAGTTCAGCGCGTCGGTGCCCTTGCTCTTCAAGTTGTCGG
TGTACACCCACTCCAGGTCCGACACCACGTAGTACACGTCGTGGCCCTTGTACTTTTCAAACTGG
CGGAACTCGCCCGGGCTGTTGAACTTGACCCGGTACAACGGGTGCTGCAACCGCCCGAACGCCTC
GTAGAGCGGGCCCAAGAGGGTGCGGTCCTCGAAGCAGAGCACCAGCCGCTCCTTGAGCACCCGGA
ACTCCCCCAGGATCAGCGCCTTGACCACCACGGAGTCCTCCACCA
Found at i:440778 original size:18 final size:18
Alignment explanation
Indices: 440731--440779 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
440721 CCTGGCCCGC
* *
440731 CTGCTGGTAGTACTGCTG
1 CTGCTGGTACTGCTGCTG
440749 CTGCTGGTACTGCTGCTG
1 CTGCTGGTACTGCTGCTG
440767 CTGCTGGTACTGC
1 CTGCTGGTACTGC
440780 GGGTAGTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.08, C:0.27, G:0.33, T:0.33
Consensus pattern (18 bp):
CTGCTGGTACTGCTGCTG
Left flanking sequence: Indices 440231 -- 440730
TTCAAATCTGATCCAGTATTCCAATCTGATCTAGTGTTCCAGTCTGATCTAGTACTCCATTCTGA
TCCAGTATTCGAACCAGAGTCTCAAGCGACAAGGTGGTGGACGTGCTCAGAAGCAACTTCACATC
CTTTCCACACATTCCCTTCTCTCACCGTCTTCTCTCTTCTCCCATCCTCATCCTACCAATTACAC
TATGTTATTTTGTTAACGCGATAACGAAAACTACAGGAGGTCGTACGGGGTCATAGACATGCAAA
TTAAGGGCCCTGGGGCGGGTAGTACTGGTTCGGGTGCTGCGGCGGCTGCGGCGGCTGCTGCTGTT
GCTGCTGCTGCTGCTGGAACTGCTGCTGCTGTTGCATGTACAACTGGTACTGCTGTAACTGTTCC
GGGGTGTACTGCTGGTACTGCTGGCCCTGCCCGTAGGGGTACTGGCGCTGGTGGGCGGCGCCCTG
CGGGTGGCCCTGGCCCTGCGGGTGGCCCTGGTGGCCCTGGCCCGC
Right flanking sequence: Indices 440780 -- 441279
GGGTAGTACTGCTGCTGGGGCGGCTGCTGCCCGTAGTACTGCTGCTGGTACCCCTGCTGGTACAC
GTGGGCCGGCTGGTGGTACACCGGCTGCTGCACCGGCGCCTGGGCCGGCTGGGCGTACCCGTACC
CCGCGGCAAACCGCTTGGGCGCCGGCGGCACGTGTCCTTCCTGCTTGCGCTTGTTTTTGTTCTTG
CGCTTGCGCTTGGCCGCCGCCTCGAGCTCGTCGTCGCTGAACTCCTGCTCGTCCTCGGGGAGCTC
TTCGTCGTGGAAGTTCAGCGCGTCGGTGCCCTTGCTCTTCAAGTTGTCGGTGTACACCCACTCCA
GGTCCGACACCACGTAGTACACGTCGTGGCCCTTGTACTTTTCAAACTGGCGGAACTCGCCCGGG
CTGTTGAACTTGACCCGGTACAACGGGTGCTGCAACCGCCCGAACGCCTCGTAGAGCGGGCCCAA
GAGGGTGCGGTCCTCGAAGCAGAGCACCAGCCGCTCCTTGAGCAC
Found at i:440837 original size:30 final size:30
Alignment explanation
Indices: 440782--440838 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
440772 GGTACTGCGG
* **
440782 GTAGTACTGCTGCTGGGGCGGCTGCTGCCC
1 GTAGTACTGCTGCTGGGACCCCTGCTGCCC
*
440812 GTAGTACTGCTGCTGGTACCCCTGCTG
1 GTAGTACTGCTGCTGGGACCCCTGCTG
440839 GTACACGTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.09, C:0.30, G:0.35, T:0.26
Consensus pattern (30 bp):
GTAGTACTGCTGCTGGGACCCCTGCTGCCC
Left flanking sequence: Indices 440282 -- 440781
GTACTCCATTCTGATCCAGTATTCGAACCAGAGTCTCAAGCGACAAGGTGGTGGACGTGCTCAGA
AGCAACTTCACATCCTTTCCACACATTCCCTTCTCTCACCGTCTTCTCTCTTCTCCCATCCTCAT
CCTACCAATTACACTATGTTATTTTGTTAACGCGATAACGAAAACTACAGGAGGTCGTACGGGGT
CATAGACATGCAAATTAAGGGCCCTGGGGCGGGTAGTACTGGTTCGGGTGCTGCGGCGGCTGCGG
CGGCTGCTGCTGTTGCTGCTGCTGCTGCTGGAACTGCTGCTGCTGTTGCATGTACAACTGGTACT
GCTGTAACTGTTCCGGGGTGTACTGCTGGTACTGCTGGCCCTGCCCGTAGGGGTACTGGCGCTGG
TGGGCGGCGCCCTGCGGGTGGCCCTGGCCCTGCGGGTGGCCCTGGTGGCCCTGGCCCGCCTGCTG
GTAGTACTGCTGCTGCTGGTACTGCTGCTGCTGCTGGTACTGCGG
Right flanking sequence: Indices 440839 -- 441338
GTACACGTGGGCCGGCTGGTGGTACACCGGCTGCTGCACCGGCGCCTGGGCCGGCTGGGCGTACC
CGTACCCCGCGGCAAACCGCTTGGGCGCCGGCGGCACGTGTCCTTCCTGCTTGCGCTTGTTTTTG
TTCTTGCGCTTGCGCTTGGCCGCCGCCTCGAGCTCGTCGTCGCTGAACTCCTGCTCGTCCTCGGG
GAGCTCTTCGTCGTGGAAGTTCAGCGCGTCGGTGCCCTTGCTCTTCAAGTTGTCGGTGTACACCC
ACTCCAGGTCCGACACCACGTAGTACACGTCGTGGCCCTTGTACTTTTCAAACTGGCGGAACTCG
CCCGGGCTGTTGAACTTGACCCGGTACAACGGGTGCTGCAACCGCCCGAACGCCTCGTAGAGCGG
GCCCAAGAGGGTGCGGTCCTCGAAGCAGAGCACCAGCCGCTCCTTGAGCACCCGGAACTCCCCCA
GGATCAGCGCCTTGACCACCACGGAGTCCTCCACCACCAGCACCA
Found at i:441821 original size:39 final size:39
Alignment explanation
Indices: 441764--441846 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
441754 CTGGGCATTT
*
441764 GGCTCAGACTGGACGGGCTGGGCTGGCTCGGACGGAACA
1 GGCTCAGACGGGACGGGCTGGGCTGGCTCGGACGGAACA
* * * *
441803 GGCTCAGACGGGATGGGCTGGGCTGGTTCGGCCGGAGCA
1 GGCTCAGACGGGACGGGCTGGGCTGGCTCGGACGGAACA
441842 GGCTC
1 GGCTC
441847 GGAGTGGGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.14, C:0.25, G:0.46, T:0.14
Consensus pattern (39 bp):
GGCTCAGACGGGACGGGCTGGGCTGGCTCGGACGGAACA
Left flanking sequence: Indices 441264 -- 441763
GCCGCTCCTTGAGCACCCGGAACTCCCCCAGGATCAGCGCCTTGACCACCACGGAGTCCTCCACC
ACCAGCACCACCGTGCCCAACTTCTCGATGGGCGAGTTGTCGGGGATAAAGTAGTCGTCCGGGAG
GAGCGGCGCGGGCTCGTTGGCCACCTCGTTGGCCAGCCGGATGGGCCCGGCGCCCTCGCCGTAGT
CGTCGTCGTCGCCGTCGTCCGCCTCGACGTAGTCGTCGTCCGAGTCGTTGTCGGGCTCCACGTCG
TCGGGCTCGTCCTCCTCCAGCAGCAGCGACACCTCGTCGTCGGAGAACGCCTGCGTGGGCGTCTG
CTGGGGCTCCGGGTTGGCGGCGAACAGCGCCACGTCGACCTCGGTGCCGTTGGGCTGGGCGTTGG
GCTCGGGGTGCGCTGGCGGCTCCGGGTGGGCTTGCTGCGGCTCGGAATGGACTGGCTGCGTGGTC
TGAGCGATCTGAGCGTGTTGAACGGGCTGAACTGGCTGGGCATTT
Right flanking sequence: Indices 441847 -- 442346
GGAGTGGGCTGCCGCAGCCTGAACGGGATCCTGCTGAGGCTCAGATGCGAGCTCTGGCTGCGTGG
GCCCCGCCGTCGGGAGCTCCGTCTGGAACTCCGTCGAGGGCTCCGGTGCTGTGGGTTTGGTTTCT
ATCGGCGCCTGGGGCTCGGCGGGCGCGGTGGTGGCCGTCTCCGCCGGCTGGGTGGGCGGGTGCAC
CTCGTGCTTGGGCTCCGTGTCGTTGTTTTCGGCCCCGGCCTGGGCGGTGGTCCCGGCGTCGTTGG
CGGAGTTTGACGGCTCAGACTCACTCTTCACCGCGTCCGACACGGGCTCCCCACCTGCCTGCGCC
TCTGCGGGCTCCGGTTGTGTCTCTACGTTGGGCTCGCCCCCCGTGCTCGCGGTCGAGGGCGTTTC
CAGCGGGGCCACCGCGGTCTGCGCACCGGTTTCCGGCTCGGACGCCGCGGTGGTGTGTTTTGGCA
CGCTGTCGTCCGCCGCCAGAGCCCCGGTGGCGGTGTCCACCCCCG
Found at i:443473 original size:22 final size:22
Alignment explanation
Indices: 443448--443505 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
443438 CTCTGTGTAT
* *
443448 TCTTTTCTTCTCTTTCTCTCTC
1 TCTTTTCTTCTCTCTCTCTCAC
443470 TC-TTTCGTTCTCTCTCTCTCAC
1 TCTTTTC-TTCTCTCTCTCTCAC
443492 TCCTTTTC-TCTCTC
1 T-CTTTTCTTCTCTC
443506 ACACTCTCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
21 4 0.13
22 22 0.71
23 1 0.03
24 4 0.13
ACGTcount: A:0.02, C:0.40, G:0.02, T:0.57
Consensus pattern (22 bp):
TCTTTTCTTCTCTCTCTCTCAC
Left flanking sequence: Indices 442948 -- 443447
GGACGAGCAGCGGGCGGAGGCCCGGGCGTGCGGGCAGCTGGACGCGGTGGGCGGGCTCTACGGGG
TGTCTACGGGTGGTGACCACGGGGGTTGCCCGTTGGGCGGTGTGTTTTTCGGTTTCCCCGGCGGT
CGTGTCTAGTTTAGCTAGTTGTTGTCTTTTGTCACCGTGGCAGTGTCTTGCTCCTTATTCTCTGT
CTACGACTTACCGCATTCGTCGGACATCGGGTCTACCTGAGGTGGTGGCGGGGCTTGTAACGTTG
TAGCCACCCGGGCGGCCGTTGCCCCGACTATTGTTTCCGTTGTCCCATCGAGGCGATCCCGACGA
TCAATCGCCCAGAATCACGTTTCAGGAGCGCCCGCGAACCCCGTTCCTGGTTGGGAAATACGAGA
CAGGAATGCGAGACGAGGATGCATAGAGTCGAGAGCGGACACTGTTGGCTATGTACGGTACTACT
AGTTACTACCAGTAGGGTCCTGCTTTTTATTTCTACTCTGTGTAT
Right flanking sequence: Indices 443506 -- 444005
ACACTCTCTCCTTGGTATGCTTCGCCCTATACCTTTTTTCCTTTAGCTTCCCCTTGAACCTTATT
TGCCACCGCCTCCTTAAAGTTCGCGCGAGCCATCAACCACCCCACATGAAAGTGTTTGTATTAGG
CGCCACGGGGCTTGTCGGCCACGAGGTGTTTTCGCAGTGTCTCGCCAAGAACTACGACGTTGTCA
CTGTAACCCGCCGTGCCCTCGAGGGCGGCAAAAACGTGGTGGAGGCCAACACCGACCAGTGGCCT
GCCATCATCGAGCAGGAGGCGGTGGGTGCCACCGCGTTCATCTCGGGTTTTGGCACCACTCGCGC
CAAAGCGGGCGGAATGGACAACTTCCGCAAGATCGACTACGGGGTCAACTACGCTGCGGCACAGG
CGGCGAAGAAGGCCGGGGTGCTGACGTTTGTGTTGGTGCTGAGCGGCGGTGCGCTGGCGCTGCTG
TGGTTCCCGTACTTGGCGCTGAAGGGGAAGCTTGAGGACGACATT
Found at i:443501 original size:18 final size:18
Alignment explanation
Indices: 443460--443511 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
443450 TTTTCTTCTC
** *
443460 TTTCTCTCTCTCTTTCGT
1 TTTCTCTCTCTCACTCCT
*
443478 TCTCTCTCTCTCACTCCT
1 TTTCTCTCTCTCACTCCT
*
443496 TTTCTCTCTCACACTC
1 TTTCTCTCTCTCACTC
443512 TCTCCTTGGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.06, C:0.42, G:0.02, T:0.50
Consensus pattern (18 bp):
TTTCTCTCTCTCACTCCT
Left flanking sequence: Indices 442960 -- 443459
GGCGGAGGCCCGGGCGTGCGGGCAGCTGGACGCGGTGGGCGGGCTCTACGGGGTGTCTACGGGTG
GTGACCACGGGGGTTGCCCGTTGGGCGGTGTGTTTTTCGGTTTCCCCGGCGGTCGTGTCTAGTTT
AGCTAGTTGTTGTCTTTTGTCACCGTGGCAGTGTCTTGCTCCTTATTCTCTGTCTACGACTTACC
GCATTCGTCGGACATCGGGTCTACCTGAGGTGGTGGCGGGGCTTGTAACGTTGTAGCCACCCGGG
CGGCCGTTGCCCCGACTATTGTTTCCGTTGTCCCATCGAGGCGATCCCGACGATCAATCGCCCAG
AATCACGTTTCAGGAGCGCCCGCGAACCCCGTTCCTGGTTGGGAAATACGAGACAGGAATGCGAG
ACGAGGATGCATAGAGTCGAGAGCGGACACTGTTGGCTATGTACGGTACTACTAGTTACTACCAG
TAGGGTCCTGCTTTTTATTTCTACTCTGTGTATTCTTTTCTTCTC
Right flanking sequence: Indices 443512 -- 444011
TCTCCTTGGTATGCTTCGCCCTATACCTTTTTTCCTTTAGCTTCCCCTTGAACCTTATTTGCCAC
CGCCTCCTTAAAGTTCGCGCGAGCCATCAACCACCCCACATGAAAGTGTTTGTATTAGGCGCCAC
GGGGCTTGTCGGCCACGAGGTGTTTTCGCAGTGTCTCGCCAAGAACTACGACGTTGTCACTGTAA
CCCGCCGTGCCCTCGAGGGCGGCAAAAACGTGGTGGAGGCCAACACCGACCAGTGGCCTGCCATC
ATCGAGCAGGAGGCGGTGGGTGCCACCGCGTTCATCTCGGGTTTTGGCACCACTCGCGCCAAAGC
GGGCGGAATGGACAACTTCCGCAAGATCGACTACGGGGTCAACTACGCTGCGGCACAGGCGGCGA
AGAAGGCCGGGGTGCTGACGTTTGTGTTGGTGCTGAGCGGCGGTGCGCTGGCGCTGCTGTGGTTC
CCGTACTTGGCGCTGAAGGGGAAGCTTGAGGACGACATTGTCGCG
Found at i:447696 original size:10 final size:10
Alignment explanation
Indices: 447683--447720 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
447673 CGTTTGATTT
447683 GTGTGGTTTG
1 GTGTGGTTTG
447693 GTGTGGTTTG
1 GTGTGGTTTG
*
447703 GTGTGATTTG
1 GTGTGGTTTG
*
447713 GTTTGGTT
1 GTGTGGTT
447721 GATGTTGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.03, C:0.00, G:0.45, T:0.53
Consensus pattern (10 bp):
GTGTGGTTTG
Left flanking sequence: Indices 447183 -- 447682
CTCGTCCTTCTTCTCGGTCAGGTAGAACCGCAGCGCAAGCACGGGGCGCACCACCGGTGCTACGC
GGACCGTTCTCGCCGCGAAAACCCGCAGCGCGGGGCGTACCAACAGCCTAAACATCGTGAGGTGG
TGGATGTTTCTGGAGTAGTGGTTGAAAAATTTTAGGCCGGCACATGACCGCCGCAACCAAAAAAG
TGCAGAGTGAGGGCCGGTGGGGCGGGCAGCGGGAGGCGGTGGCGGGATGTGGGGGTGCTAGGGGT
ATTTGCGAGTGGTTTAGGGGGTGTGCGGTGCTTTTTTTTTTTGGGTTTTAAGGCTGTTTTGGTGG
AGCTGGGTGGGGTTTGCGCGGTCCCCGTACGGTGATGATAAGTGAGAAATGAGTGGAGAACGGAG
GAGAAGGAGATGGAAGAGCGGGACGGGCGAGGACGTCCGTGGCGTGACAGTGTAGGGGGTAGTAG
TATAGAAGGTTAGGCACAGGTTGGTTGTTTAACTTCGTTTGATTT
Right flanking sequence: Indices 447721 -- 448220
GATGTTGTTTGTTTTGGGTATGACGTCGTTGTGTGGCGAATTACCGAAGGCTCGAGAAGAAGCGG
TATCTGGTAGCGTGATGGTAGGCGAAGAGAAAGGGACGGGGACAGTAGGCACGGGATTAGAGGAA
AGAGCATAAACTGTGTGAAGTTAAGGGGATGGGTAAAATATACACCGGTTCGGACTCTGCTCGGG
TCATTTCGGAGTTTGGTTCGGGACAGTGGCAATTTTTAGCGTTTGACCATGGCTTTTCTAGGTGT
ACGAAACGCCAGAGACGACCCCGATGCAACCAGTTAGGTCCCGGCTAACCCATCCCCGATCTTCG
GGCGATGGACGGCCTCTCGCTAATCGCCGGGTAAAGGCACAGCGCTACATAACCAAGATGGACGT
GACCGGGAAGTGACCGGGATAGGCAAGGAGGAAGTCTTTTGGGAGAAAAGGGTTATAATGGAGAC
ACGTCGTACTCATAAACAATATTCTGTCACCTTTGTATCAATCTT
Found at i:449218 original size:38 final size:39
Alignment explanation
Indices: 449162--449239 Score: 122
Period size: 38 Copynumber: 2.0 Consensus size: 39
449152 CGAGATCTTC
449162 CAAAAGAACCCCTAATCCA-CAAAAGAACCCCTAATCCA
1 CAAAAGAACCCCTAATCCACCAAAAGAACCCCTAATCCA
* * *
449200 CAAATGAACCCCTAATCCACCAAAAGAACCCTTAGTCCA
1 CAAAAGAACCCCTAATCCACCAAAAGAACCCCTAATCCA
449239 C
1 C
449240 GCCCTCCTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 18 0.50
39 18 0.50
ACGTcount: A:0.44, C:0.37, G:0.06, T:0.13
Consensus pattern (39 bp):
CAAAAGAACCCCTAATCCACCAAAAGAACCCCTAATCCA
Left flanking sequence: Indices 448662 -- 449161
ACAGAACAGAAGGTGACCAAGCTCATCGAGGTGATCACCCCACAGCCCGAAATGCTCTACTTGTT
GCTGTTGTTCCACTACGAGTGCGCGCGCATGGGCATTACCCGTTCCGTCGACGGCCGACGCAAGC
ACTGGGGGTACATGTGGCAACACATGTTCCGCCTCCGGCCCATCCACGACGCCTTCTGGGAGAAC
GCCCGGTTGTTGGACTTGGCCAACCACAAACACAAGCTCGGGTACGGGCCCCAGGACTTGGGGCT
TTTGGACCCTAAGAACTTTTCCGAGGACGACTACTCTCAGCTCCAGCACGGGGTGTTCCACGGCA
CGGACTTCAGACAGGTGGAGGGGGTGCTGTTCACCCGCCCGTGGGAACACTGACTTGTATATAGC
GTTCGTGAAGCGGGAGGTGCATTGTAAATTAGAATAGACGAGGGAATTCCCACTTCCCACACAAC
CCGGTAACGAGTCCGAAACTTGACGAGGGAATAGACGAGATCTTC
Right flanking sequence: Indices 449240 -- 449739
GCCCTCCTACACACCACACCCCTAACTCTACTCTTTCTCGTTTCTCATTTATTCGTGACGGAGCA
GGCTCCAATGCTAATGCTTTTTCAACTTCTTCAACAACTTCCCCGAGTCGGTGTCCAGCGCGCGC
TTTTTGTAGCCGGCCAACTCCACCTTCTTGGCTCCCTCGTGGGAGTTGTCAACAAAGTCGTTGTC
ACCCGCCACCACGGTCTGTTTGTACGACTTGATGCGTAACCGCCCGTTGATCAACACCTTTTCGG
GAATGTCAGACACACACGCCTTGGCACGGGCACGGTCTAGCCCGAGGGTCTTTAGGAGAGCCAAG
ATGTCGTGTGACGACCGCACCTGCGACGAGTTCTGGGCCCCCAGGGACACGAGCACCCCGCGCGA
CCGCAGCAGCCGGATCAACTGAAGAGCGTTGTAGAAAAAGTTTTTCCGGGCCTCTGCCAGCTGGG
AGTCTCCCCCGGGGATGTAGCCGAGGATCATCGCCCCGTAGCAGA
Found at i:449231 original size:19 final size:19
Alignment explanation
Indices: 449162--449230 Score: 120
Period size: 19 Copynumber: 3.6 Consensus size: 19
449152 CGAGATCTTC
449162 CAAAAGAACCCCTAATCCA
1 CAAAAGAACCCCTAATCCA
449181 CAAAAGAACCCCTAATCCA
1 CAAAAGAACCCCTAATCCA
*
449200 CAAATGAACCCCTAATCCA
1 CAAAAGAACCCCTAATCCA
449219 CCAAAAGAACCC
1 -CAAAAGAACCC
449231 TTAGTCCACG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 37 0.79
20 10 0.21
ACGTcount: A:0.46, C:0.38, G:0.06, T:0.10
Consensus pattern (19 bp):
CAAAAGAACCCCTAATCCA
Left flanking sequence: Indices 448662 -- 449161
ACAGAACAGAAGGTGACCAAGCTCATCGAGGTGATCACCCCACAGCCCGAAATGCTCTACTTGTT
GCTGTTGTTCCACTACGAGTGCGCGCGCATGGGCATTACCCGTTCCGTCGACGGCCGACGCAAGC
ACTGGGGGTACATGTGGCAACACATGTTCCGCCTCCGGCCCATCCACGACGCCTTCTGGGAGAAC
GCCCGGTTGTTGGACTTGGCCAACCACAAACACAAGCTCGGGTACGGGCCCCAGGACTTGGGGCT
TTTGGACCCTAAGAACTTTTCCGAGGACGACTACTCTCAGCTCCAGCACGGGGTGTTCCACGGCA
CGGACTTCAGACAGGTGGAGGGGGTGCTGTTCACCCGCCCGTGGGAACACTGACTTGTATATAGC
GTTCGTGAAGCGGGAGGTGCATTGTAAATTAGAATAGACGAGGGAATTCCCACTTCCCACACAAC
CCGGTAACGAGTCCGAAACTTGACGAGGGAATAGACGAGATCTTC
Right flanking sequence: Indices 449231 -- 449730
TTAGTCCACGCCCTCCTACACACCACACCCCTAACTCTACTCTTTCTCGTTTCTCATTTATTCGT
GACGGAGCAGGCTCCAATGCTAATGCTTTTTCAACTTCTTCAACAACTTCCCCGAGTCGGTGTCC
AGCGCGCGCTTTTTGTAGCCGGCCAACTCCACCTTCTTGGCTCCCTCGTGGGAGTTGTCAACAAA
GTCGTTGTCACCCGCCACCACGGTCTGTTTGTACGACTTGATGCGTAACCGCCCGTTGATCAACA
CCTTTTCGGGAATGTCAGACACACACGCCTTGGCACGGGCACGGTCTAGCCCGAGGGTCTTTAGG
AGAGCCAAGATGTCGTGTGACGACCGCACCTGCGACGAGTTCTGGGCCCCCAGGGACACGAGCAC
CCCGCGCGACCGCAGCAGCCGGATCAACTGAAGAGCGTTGTAGAAAAAGTTTTTCCGGGCCTCTG
CCAGCTGGGAGTCTCCCCCGGGGATGTAGCCGAGGATCATCGCCC
Found at i:452282 original size:9 final size:9
Alignment explanation
Indices: 452220--452279 Score: 102
Period size: 9 Copynumber: 6.7 Consensus size: 9
452210 GGGGTCGAAA
452220 GGACTGTGG
1 GGACTGTGG
452229 GGACTGTGG
1 GGACTGTGG
452238 GGACTGTGG
1 GGACTGTGG
452247 GGACTGTGG
1 GGACTGTGG
*
452256 GGACTGAGG
1 GGACTGTGG
*
452265 GGACTGAGG
1 GGACTGTGG
452274 GGACTG
1 GGACTG
452280 AGGTTGGGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.15, C:0.12, G:0.55, T:0.18
Consensus pattern (9 bp):
GGACTGTGG
Left flanking sequence: Indices 451720 -- 452219
TAGGCGTTTTACGTCAGACGATCGGGAAAACCCGTGATAGCAATCGCATACCGGTGGCTAGTGGT
GGCAGTTGCGTACGAAGACAGGTAGTCAGTGGGTAATTACCAAAGTAGTATCGTAATTACATGCC
TAACCGACAAATGCATCATGGGGCATCATCGAACGGCGGCAGAAAAAATAGGAGAAATTGGGTAT
AATATTATTGGGGGCACCGTGTGCGGCTGCCCGGTGCAAAAACAGAAGGGGCCGTGTAGAGTAAG
GACAAGGCTCAGGAGGCTCAGGGTGAGGCTTGAGGCCTAGAAGCGGAGAAAAGCAAGGTGTATGT
AGCTGGAGGACGGAGTATTAGCGGCTAGGTTCACTAGGCAACATATGATATAAGGTTTAAAGATG
ACGTACTGGGTTTAGTAGGGTTTAGTACAACTAAGTGGGGTTTAGTGGGGATGCGGGTGGGGAAG
CAGTGGGGATGAAACGTGGTGGGTGAATAATAGGTGGGGTCGAAA
Right flanking sequence: Indices 452280 -- 452779
AGGTTGGGAATAATGGAATGGTACAAAGGAGGGGAAGGAGGGGACGACACGACATTTCGGATGTG
GGGGACATACGAAGGAGGGGTGGGGCTGGGCTCATATCACACGTCACCAGATTCTTCACGAGCCA
TCACGAGATACTTCGAGAGACAATGTACTAACAATAGCCCGTAAATTGGTGCCAAGATGAAGCAA
GATGGTGTGGTCGGACCAGCTGTGTAGAAGAAGATGAGCAGACTTGGCGTGCTTAGCAAACATGT
CAAGTGTCCCGATTCAGCGAAACTGCAGGAACCGGACTAGTTGACAGAGTAACGTGATTATTGAC
GTAGGATTTTGACGGACAAGGTAACGTCTCTTCGACGAAGGAGCGTTGCTGCCAAATGGATAATT
ACTCTAATACGGCTCGATCTCAAGCAATGGGTCGTCTTCGTCGAACGAGGGCTTAGTTTAGACAA
CAAAAGCTGTCACCCTAATGCCTGCAGCAATTGTGTCAGTTTGGG
Found at i:453064 original size:11 final size:11
Alignment explanation
Indices: 453048--453107 Score: 67
Period size: 11 Copynumber: 5.9 Consensus size: 11
453038 CACCCGAGTC
453048 ACCCACACACT
1 ACCCACACACT
453059 ACCCACACACT
1 ACCCACACACT
453070 A-CC-CACACT
1 ACCCACACACT
453079 A--C-CACACT
1 ACCCACACACT
*
453087 ACCCACACATT
1 ACCCACACACT
*
453098 ACCCCCACAC
1 ACCCACACAC
453108 CCACACTACC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
8 8 0.19
9 7 0.16
10 3 0.07
11 25 0.58
ACGTcount: A:0.35, C:0.55, G:0.00, T:0.10
Consensus pattern (11 bp):
ACCCACACACT
Left flanking sequence: Indices 452548 -- 453047
CCGATTCAGCGAAACTGCAGGAACCGGACTAGTTGACAGAGTAACGTGATTATTGACGTAGGATT
TTGACGGACAAGGTAACGTCTCTTCGACGAAGGAGCGTTGCTGCCAAATGGATAATTACTCTAAT
ACGGCTCGATCTCAAGCAATGGGTCGTCTTCGTCGAACGAGGGCTTAGTTTAGACAACAAAAGCT
GTCACCCTAATGCCTGCAGCAATTGTGTCAGTTTGGGCCGTGTTAGCAAACACAAGTTTAGGCCG
TGAACAGATACGAAGCTTTGAAACCCTATACACGAGACATCATGGTACTAGTGTGACAACTTCAT
GTAGTCTTCGAAAATCAAAGGCTGATTTCGCTTTGTTCGACACCCATAAGCATGGGACGAACCCA
ACCATCCCGCGGTGTCTAAACTAAAAACCATCGCGGGCTACTCCCACACACGCTAGCCACAGACG
TTACCTCCCCACATTACCCACCCACCTACGTTACCCACCCGAGTC
Right flanking sequence: Indices 453108 -- 453607
CCACACTACCCACCCACAACCAATCCTTCTCCCAATTCATTAAACTATATAAAGTCGACACTATA
CAAAAACGAAAAACGACCCAAAACCAAGCGTTAAAACCAAATCCCGCCGAATTATTCCAAGTTGA
GAGAGTTCATTGTGCCCGATAAGTTAAACAACGGGTCCTGCTGCTGCTGGCCCTGGCCCTGGCTC
GGCAAAAACTGCGGGTACACCTGCTGGCTCTGCCGGGTCTGCAGCGACCGCCCGCCCAACGCTGC
GGCGGCGGCTGCCGCGGCCAGGTTGACGGGCTGCCCGCTGGGGGTGCCCTGGGGCTGCTGCGACT
GCATGTAGAACTTTGACAGCACCGAGTTGAGCAGGCCCCCCACCAGCCCCCCACCCGTCAGCGCC
GTCATCAGGTTGGTGATGGAGTTGGTGAGCAGGCCCGTCACCGAGCCCAGCATCGACCCCGTCAT
CGACCCCATCAGGTTCAACCCGCCCAGATGGGTGCCTCCGCCCAA
Found at i:453085 original size:8 final size:9
Alignment explanation
Indices: 453053--453120 Score: 77
Period size: 9 Copynumber: 7.3 Consensus size: 9
453043 GAGTCACCCA
453053 CACACTACCC
1 CACACTA-CC
453063 ACACACTACC
1 -CACACTACC
453073 CACACTA-C
1 CACACTACC
453081 CACACTACC
1 CACACTACC
453090 CACACATTACC
1 CACAC--TACC
*
453101 CCCAC-ACC
1 CACACTACC
453109 CACACTACC
1 CACACTACC
453118 CAC
1 CAC
453121 CCACAACCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
8 15 0.29
9 19 0.37
10 2 0.04
11 15 0.29
ACGTcount: A:0.34, C:0.56, G:0.00, T:0.10
Consensus pattern (9 bp):
CACACTACC
Left flanking sequence: Indices 452553 -- 453052
TCAGCGAAACTGCAGGAACCGGACTAGTTGACAGAGTAACGTGATTATTGACGTAGGATTTTGAC
GGACAAGGTAACGTCTCTTCGACGAAGGAGCGTTGCTGCCAAATGGATAATTACTCTAATACGGC
TCGATCTCAAGCAATGGGTCGTCTTCGTCGAACGAGGGCTTAGTTTAGACAACAAAAGCTGTCAC
CCTAATGCCTGCAGCAATTGTGTCAGTTTGGGCCGTGTTAGCAAACACAAGTTTAGGCCGTGAAC
AGATACGAAGCTTTGAAACCCTATACACGAGACATCATGGTACTAGTGTGACAACTTCATGTAGT
CTTCGAAAATCAAAGGCTGATTTCGCTTTGTTCGACACCCATAAGCATGGGACGAACCCAACCAT
CCCGCGGTGTCTAAACTAAAAACCATCGCGGGCTACTCCCACACACGCTAGCCACAGACGTTACC
TCCCCACATTACCCACCCACCTACGTTACCCACCCGAGTCACCCA
Right flanking sequence: Indices 453121 -- 453620
CCACAACCAATCCTTCTCCCAATTCATTAAACTATATAAAGTCGACACTATACAAAAACGAAAAA
CGACCCAAAACCAAGCGTTAAAACCAAATCCCGCCGAATTATTCCAAGTTGAGAGAGTTCATTGT
GCCCGATAAGTTAAACAACGGGTCCTGCTGCTGCTGGCCCTGGCCCTGGCTCGGCAAAAACTGCG
GGTACACCTGCTGGCTCTGCCGGGTCTGCAGCGACCGCCCGCCCAACGCTGCGGCGGCGGCTGCC
GCGGCCAGGTTGACGGGCTGCCCGCTGGGGGTGCCCTGGGGCTGCTGCGACTGCATGTAGAACTT
TGACAGCACCGAGTTGAGCAGGCCCCCCACCAGCCCCCCACCCGTCAGCGCCGTCATCAGGTTGG
TGATGGAGTTGGTGAGCAGGCCCGTCACCGAGCCCAGCATCGACCCCGTCATCGACCCCATCAGG
TTCAACCCGCCCAGATGGGTGCCTCCGCCCAACCCAGACCCCATC
Found at i:453085 original size:28 final size:28
Alignment explanation
Indices: 453053--453120 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
453043 GAGTCACCCA
453053 CACACTACCCACACACTACCCACACTA-C
1 CACACTACCCACACACTACCCACAC-ACC
* *
453081 CACACTACCCACACATTACCCCCACACC
1 CACACTACCCACACACTACCCACACACC
453109 CACACTACCCAC
1 CACACTACCCAC
453121 CCACAACCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 36 0.97
ACGTcount: A:0.34, C:0.56, G:0.00, T:0.10
Consensus pattern (28 bp):
CACACTACCCACACACTACCCACACACC
Left flanking sequence: Indices 452553 -- 453052
TCAGCGAAACTGCAGGAACCGGACTAGTTGACAGAGTAACGTGATTATTGACGTAGGATTTTGAC
GGACAAGGTAACGTCTCTTCGACGAAGGAGCGTTGCTGCCAAATGGATAATTACTCTAATACGGC
TCGATCTCAAGCAATGGGTCGTCTTCGTCGAACGAGGGCTTAGTTTAGACAACAAAAGCTGTCAC
CCTAATGCCTGCAGCAATTGTGTCAGTTTGGGCCGTGTTAGCAAACACAAGTTTAGGCCGTGAAC
AGATACGAAGCTTTGAAACCCTATACACGAGACATCATGGTACTAGTGTGACAACTTCATGTAGT
CTTCGAAAATCAAAGGCTGATTTCGCTTTGTTCGACACCCATAAGCATGGGACGAACCCAACCAT
CCCGCGGTGTCTAAACTAAAAACCATCGCGGGCTACTCCCACACACGCTAGCCACAGACGTTACC
TCCCCACATTACCCACCCACCTACGTTACCCACCCGAGTCACCCA
Right flanking sequence: Indices 453121 -- 453620
CCACAACCAATCCTTCTCCCAATTCATTAAACTATATAAAGTCGACACTATACAAAAACGAAAAA
CGACCCAAAACCAAGCGTTAAAACCAAATCCCGCCGAATTATTCCAAGTTGAGAGAGTTCATTGT
GCCCGATAAGTTAAACAACGGGTCCTGCTGCTGCTGGCCCTGGCCCTGGCTCGGCAAAAACTGCG
GGTACACCTGCTGGCTCTGCCGGGTCTGCAGCGACCGCCCGCCCAACGCTGCGGCGGCGGCTGCC
GCGGCCAGGTTGACGGGCTGCCCGCTGGGGGTGCCCTGGGGCTGCTGCGACTGCATGTAGAACTT
TGACAGCACCGAGTTGAGCAGGCCCCCCACCAGCCCCCCACCCGTCAGCGCCGTCATCAGGTTGG
TGATGGAGTTGGTGAGCAGGCCCGTCACCGAGCCCAGCATCGACCCCGTCATCGACCCCATCAGG
TTCAACCCGCCCAGATGGGTGCCTCCGCCCAACCCAGACCCCATC
Found at i:453118 original size:17 final size:18
Alignment explanation
Indices: 453053--453118 Score: 73
Period size: 17 Copynumber: 3.6 Consensus size: 18
453043 GAGTCACCCA
453053 CACACTACCCACACACTACC
1 CACACTACCC-C-CACTACC
*
453073 CACACTA-CCACACTACC
1 CACACTACCCCCACTACC
453090 CACACATTACCCCCAC-ACC
1 CACAC--TACCCCCACTACC
453109 CACACTACCC
1 CACACTACCC
453119 ACCCACAACC
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
17 17 0.41
19 12 0.29
20 12 0.29
ACGTcount: A:0.33, C:0.56, G:0.00, T:0.11
Consensus pattern (18 bp):
CACACTACCCCCACTACC
Left flanking sequence: Indices 452553 -- 453052
TCAGCGAAACTGCAGGAACCGGACTAGTTGACAGAGTAACGTGATTATTGACGTAGGATTTTGAC
GGACAAGGTAACGTCTCTTCGACGAAGGAGCGTTGCTGCCAAATGGATAATTACTCTAATACGGC
TCGATCTCAAGCAATGGGTCGTCTTCGTCGAACGAGGGCTTAGTTTAGACAACAAAAGCTGTCAC
CCTAATGCCTGCAGCAATTGTGTCAGTTTGGGCCGTGTTAGCAAACACAAGTTTAGGCCGTGAAC
AGATACGAAGCTTTGAAACCCTATACACGAGACATCATGGTACTAGTGTGACAACTTCATGTAGT
CTTCGAAAATCAAAGGCTGATTTCGCTTTGTTCGACACCCATAAGCATGGGACGAACCCAACCAT
CCCGCGGTGTCTAAACTAAAAACCATCGCGGGCTACTCCCACACACGCTAGCCACAGACGTTACC
TCCCCACATTACCCACCCACCTACGTTACCCACCCGAGTCACCCA
Right flanking sequence: Indices 453119 -- 453618
ACCCACAACCAATCCTTCTCCCAATTCATTAAACTATATAAAGTCGACACTATACAAAAACGAAA
AACGACCCAAAACCAAGCGTTAAAACCAAATCCCGCCGAATTATTCCAAGTTGAGAGAGTTCATT
GTGCCCGATAAGTTAAACAACGGGTCCTGCTGCTGCTGGCCCTGGCCCTGGCTCGGCAAAAACTG
CGGGTACACCTGCTGGCTCTGCCGGGTCTGCAGCGACCGCCCGCCCAACGCTGCGGCGGCGGCTG
CCGCGGCCAGGTTGACGGGCTGCCCGCTGGGGGTGCCCTGGGGCTGCTGCGACTGCATGTAGAAC
TTTGACAGCACCGAGTTGAGCAGGCCCCCCACCAGCCCCCCACCCGTCAGCGCCGTCATCAGGTT
GGTGATGGAGTTGGTGAGCAGGCCCGTCACCGAGCCCAGCATCGACCCCGTCATCGACCCCATCA
GGTTCAACCCGCCCAGATGGGTGCCTCCGCCCAACCCAGACCCCA
Found at i:453905 original size:21 final size:21
Alignment explanation
Indices: 453879--453943 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
453869 GTGCACCTGC
*
453879 TGCGGGTGGTGCTGCTGCAGG
1 TGCGGGTGCTGCTGCTGCAGG
* * * *
453900 TGCGGGTGCTGCGGGTGCTGT
1 TGCGGGTGCTGCTGCTGCAGG
* *
453921 TGCAGGTGCTGGTGCTGCAGG
1 TGCGGGTGCTGCTGCTGCAGG
453942 TG
1 TG
453944 GTGGTTGTTG
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.05, C:0.18, G:0.51, T:0.26
Consensus pattern (21 bp):
TGCGGGTGCTGCTGCTGCAGG
Left flanking sequence: Indices 453379 -- 453878
CCGCGGCCAGGTTGACGGGCTGCCCGCTGGGGGTGCCCTGGGGCTGCTGCGACTGCATGTAGAAC
TTTGACAGCACCGAGTTGAGCAGGCCCCCCACCAGCCCCCCACCCGTCAGCGCCGTCATCAGGTT
GGTGATGGAGTTGGTGAGCAGGCCCGTCACCGAGCCCAGCATCGACCCCGTCATCGACCCCATCA
GGTTCAACCCGCCCAGATGGGTGCCTCCGCCCAACCCAGACCCCATCAGCCCCAACAGGCCTCCG
GTGTGCTGGGGCTGGCCCGGCTTGGCGTAGGTGAGCGAGTTGTTACGCGACGACCGCTGCGGGGT
CAGCTGGGCCAGCTGGTAGAGCGGGGTTTGCGGGGAGTGCTGCTGCAACGCCGCCGCCGCCGCTG
CCGCCAGGCCCAAGAACCCGTTGGCCAAGTTGAGGGGCTGGCCCAGCGCGGTGGCGGCAGCGATG
GCCGCCGCCGTCAGGTTCACCAGGGGCATGTGCTGGTGCACCTGC
Right flanking sequence: Indices 453944 -- 454443
GTGGTTGTTGAGCATCGCCGGCTTGGGCAGCTGGCACTTCAAGCAGCAGATGTTCTTGGCAAAGT
TGTGGTACATACACACCTCGCACTTCCAGTCGCCGGCGCGGAAGGGGACGTTGTTGCCGTAGGGC
GACCGCCCCTGGTACCCGTTGTTCTGGTTCTGAGCCCCGTAGCCGCCGTGGTTCTGGTTGTAGAA
CTGGTACTGCTGGTAGCCGCCGTTGTTGTTGGCGTTGGCCACGTACTGCATCGGGTTGATCAGCC
CGGGGGTCAGCAGGTTGTTCAAGAGCGCGGTGGCGGCGGCGGCGTTGACGAGCGCCGTGTTGTAC
GGCTGTTTCTCCGGCTGCGAGCCCTGGCCCTGGCGGGTGTTGCGGTTCGAGCCCTGGCCGGCTCC
GGGGGCGGGGCTCAGCAGGTAGATCAGCTCCTGGATGGCGACGGCACCCAGCGCCGGGAACAGGC
ACCGGAAGCAGTGGGTGCGCCGCTGGAAGTTCAGGAAGCCGCACG
Found at i:453916 original size:27 final size:27
Alignment explanation
Indices: 453886--453943 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
453876 TGCTGCGGGT
*
453886 GGTGCTGCTGCAGGTGCGGGTGCTGCG
1 GGTGCTGCTGCAGGTGCGGGTGCTGCA
* *
453913 GGTGCTGTTGCAGGTGCTGGTGCTGCA
1 GGTGCTGCTGCAGGTGCGGGTGCTGCA
453940 GGTG
1 GGTG
453944 GTGGTTGTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.05, C:0.19, G:0.50, T:0.26
Consensus pattern (27 bp):
GGTGCTGCTGCAGGTGCGGGTGCTGCA
Left flanking sequence: Indices 453386 -- 453885
CAGGTTGACGGGCTGCCCGCTGGGGGTGCCCTGGGGCTGCTGCGACTGCATGTAGAACTTTGACA
GCACCGAGTTGAGCAGGCCCCCCACCAGCCCCCCACCCGTCAGCGCCGTCATCAGGTTGGTGATG
GAGTTGGTGAGCAGGCCCGTCACCGAGCCCAGCATCGACCCCGTCATCGACCCCATCAGGTTCAA
CCCGCCCAGATGGGTGCCTCCGCCCAACCCAGACCCCATCAGCCCCAACAGGCCTCCGGTGTGCT
GGGGCTGGCCCGGCTTGGCGTAGGTGAGCGAGTTGTTACGCGACGACCGCTGCGGGGTCAGCTGG
GCCAGCTGGTAGAGCGGGGTTTGCGGGGAGTGCTGCTGCAACGCCGCCGCCGCCGCTGCCGCCAG
GCCCAAGAACCCGTTGGCCAAGTTGAGGGGCTGGCCCAGCGCGGTGGCGGCAGCGATGGCCGCCG
CCGTCAGGTTCACCAGGGGCATGTGCTGGTGCACCTGCTGCGGGT
Right flanking sequence: Indices 453944 -- 454443
GTGGTTGTTGAGCATCGCCGGCTTGGGCAGCTGGCACTTCAAGCAGCAGATGTTCTTGGCAAAGT
TGTGGTACATACACACCTCGCACTTCCAGTCGCCGGCGCGGAAGGGGACGTTGTTGCCGTAGGGC
GACCGCCCCTGGTACCCGTTGTTCTGGTTCTGAGCCCCGTAGCCGCCGTGGTTCTGGTTGTAGAA
CTGGTACTGCTGGTAGCCGCCGTTGTTGTTGGCGTTGGCCACGTACTGCATCGGGTTGATCAGCC
CGGGGGTCAGCAGGTTGTTCAAGAGCGCGGTGGCGGCGGCGGCGTTGACGAGCGCCGTGTTGTAC
GGCTGTTTCTCCGGCTGCGAGCCCTGGCCCTGGCGGGTGTTGCGGTTCGAGCCCTGGCCGGCTCC
GGGGGCGGGGCTCAGCAGGTAGATCAGCTCCTGGATGGCGACGGCACCCAGCGCCGGGAACAGGC
ACCGGAAGCAGTGGGTGCGCCGCTGGAAGTTCAGGAAGCCGCACG
Found at i:453941 original size:15 final size:15
Alignment explanation
Indices: 453876--453948 Score: 71
Period size: 15 Copynumber: 5.1 Consensus size: 15
453866 CTGGTGCACC
* * *
453876 TGCTGCGGGTGGTGC
1 TGCTGCAGGTGCTGG
*
453891 TGCTGCAGGTGCGGG
1 TGCTGCAGGTGCTGG
*
453906 TGCTGCGGGTGCT-G
1 TGCTGCAGGTGCTGG
453920 T--TGCAGGTGCTGG
1 TGCTGCAGGTGCTGG
*
453933 TGCTGCAGGTGGTGG
1 TGCTGCAGGTGCTGG
453948 T
1 T
453949 TGTTGAGCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
12 9 0.19
13 2 0.04
14 2 0.04
15 34 0.72
ACGTcount: A:0.04, C:0.18, G:0.51, T:0.27
Consensus pattern (15 bp):
TGCTGCAGGTGCTGG
Left flanking sequence: Indices 453376 -- 453875
CTGCCGCGGCCAGGTTGACGGGCTGCCCGCTGGGGGTGCCCTGGGGCTGCTGCGACTGCATGTAG
AACTTTGACAGCACCGAGTTGAGCAGGCCCCCCACCAGCCCCCCACCCGTCAGCGCCGTCATCAG
GTTGGTGATGGAGTTGGTGAGCAGGCCCGTCACCGAGCCCAGCATCGACCCCGTCATCGACCCCA
TCAGGTTCAACCCGCCCAGATGGGTGCCTCCGCCCAACCCAGACCCCATCAGCCCCAACAGGCCT
CCGGTGTGCTGGGGCTGGCCCGGCTTGGCGTAGGTGAGCGAGTTGTTACGCGACGACCGCTGCGG
GGTCAGCTGGGCCAGCTGGTAGAGCGGGGTTTGCGGGGAGTGCTGCTGCAACGCCGCCGCCGCCG
CTGCCGCCAGGCCCAAGAACCCGTTGGCCAAGTTGAGGGGCTGGCCCAGCGCGGTGGCGGCAGCG
ATGGCCGCCGCCGTCAGGTTCACCAGGGGCATGTGCTGGTGCACC
Right flanking sequence: Indices 453949 -- 454448
TGTTGAGCATCGCCGGCTTGGGCAGCTGGCACTTCAAGCAGCAGATGTTCTTGGCAAAGTTGTGG
TACATACACACCTCGCACTTCCAGTCGCCGGCGCGGAAGGGGACGTTGTTGCCGTAGGGCGACCG
CCCCTGGTACCCGTTGTTCTGGTTCTGAGCCCCGTAGCCGCCGTGGTTCTGGTTGTAGAACTGGT
ACTGCTGGTAGCCGCCGTTGTTGTTGGCGTTGGCCACGTACTGCATCGGGTTGATCAGCCCGGGG
GTCAGCAGGTTGTTCAAGAGCGCGGTGGCGGCGGCGGCGTTGACGAGCGCCGTGTTGTACGGCTG
TTTCTCCGGCTGCGAGCCCTGGCCCTGGCGGGTGTTGCGGTTCGAGCCCTGGCCGGCTCCGGGGG
CGGGGCTCAGCAGGTAGATCAGCTCCTGGATGGCGACGGCACCCAGCGCCGGGAACAGGCACCGG
AAGCAGTGGGTGCGCCGCTGGAAGTTCAGGAAGCCGCACGACGGG
Found at i:454987 original size:20 final size:19
Alignment explanation
Indices: 454956--455008 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
454946 GTTGGTGGGC
*
454956 CCGGGG-GGCGCCGTGGGGT
1 CCGGGGTGGCGCC-CGGGGT
454975 CCGGGGTGGCGCCCGGGGT
1 CCGGGGTGGCGCCCGGGGT
454994 CGCAGGGGTGGCGCC
1 C-C-GGGGTGGCGCC
455009 ACCCGCAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 12 0.40
20 7 0.23
21 11 0.37
ACGTcount: A:0.02, C:0.30, G:0.58, T:0.09
Consensus pattern (19 bp):
CCGGGGTGGCGCCCGGGGT
Left flanking sequence: Indices 454456 -- 454955
AGTCGCCCGGGCGCGGGCGGTTCTTGGACGGCGGGAACGGGGTCAACACGTCCAGCGCCAGGTCA
AGAACCCGGGTCAGCGACGGCTGCACCTCGACGGCGCGGTCGTTGAGCACGCGCCCGTTCATCGC
CAACAGCTCGGTGGCCTCGTCGTGGGTGGCAAACACCGCGAACCCGGCGATCCCCCCGGTGCGTC
CCGGGGGCTTCTTTCCGGCGGCGCCCGGGGCGTCCACCGCGTCCAAGTGCTTCAACGTCCAGAAG
GCAATGGGGCGGCCGCCGTACTGGGTGAACCACGACTCAAGCTCCAGCTGGGTGGTGTCGTGCGG
GAGGTTGGTCAAGTACAAGATCTTGGACCGCTCGGCGAGGAACGCTTGCACGTCCTGCGCCAGGT
CGTAGGGCTTGGTGAGCACCTTGGGGTGGTCGGCCACCGGCAACAGCTTCTTGATGAGCTGGGCC
AAGATCGCCGTGTAGAGCTGGACGGTGGCCTTGCCGTTGGTGGGC
Right flanking sequence: Indices 455009 -- 455508
ACCCGCAGACGCGTTGGCTGCACCCGGGGTACTGGCTGCACCCGGGGTACTGGCGACGGATGCGG
TAGGCGACCCGGTGGCAGACGCGTCACCCTCGGAAGTGGGGAGCTCCACCTCCAACGCAGTGACA
ATGTTCTGCAAACTGCTCCCGGGGTAGCTCAACAGCTCGGGGTGGTACTGCTGCCACTTGCCGTA
CTCGTTGGCCAAGTCAAACACCCGTGGGTGCTGCAAGTACGGGGGCAAAACCACCGCCTTGTCAC
GGGCCTCGCGAGGCAACTGCACCCGCATTTTCGCCACGTCCACCGTGACAAACGAGAACTCGAGG
TTGTGCCCGATGATCTCGCGCTGCATATAGTCGTCAAAGTGGTGCACGGCGTCTTTGAACGACCC
GGCCGCCCGCACGTGCTCCCAGCTCACCCCGTGCAACTGCGAGCAGTAGGGGGTGATGGGGGTGT
TGGAGGGGCGGATGAGCACCAGCTCGGTGTGGGTCACCTGGAGGG
Found at i:455046 original size:18 final size:18
Alignment explanation
Indices: 455023--455062 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
455013 GCAGACGCGT
455023 TGGCTGCACCCGGGGTAC
1 TGGCTGCACCCGGGGTAC
455041 TGGCTGCACCCGGGGTAC
1 TGGCTGCACCCGGGGTAC
455059 TGGC
1 TGGC
455063 GACGGATGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.10, C:0.33, G:0.40, T:0.17
Consensus pattern (18 bp):
TGGCTGCACCCGGGGTAC
Left flanking sequence: Indices 454523 -- 455022
AACCCGGGTCAGCGACGGCTGCACCTCGACGGCGCGGTCGTTGAGCACGCGCCCGTTCATCGCCA
ACAGCTCGGTGGCCTCGTCGTGGGTGGCAAACACCGCGAACCCGGCGATCCCCCCGGTGCGTCCC
GGGGGCTTCTTTCCGGCGGCGCCCGGGGCGTCCACCGCGTCCAAGTGCTTCAACGTCCAGAAGGC
AATGGGGCGGCCGCCGTACTGGGTGAACCACGACTCAAGCTCCAGCTGGGTGGTGTCGTGCGGGA
GGTTGGTCAAGTACAAGATCTTGGACCGCTCGGCGAGGAACGCTTGCACGTCCTGCGCCAGGTCG
TAGGGCTTGGTGAGCACCTTGGGGTGGTCGGCCACCGGCAACAGCTTCTTGATGAGCTGGGCCAA
GATCGCCGTGTAGAGCTGGACGGTGGCCTTGCCGTTGGTGGGCCCGGGGGGCGCCGTGGGGTCCG
GGGTGGCGCCCGGGGTCGCAGGGGTGGCGCCACCCGCAGACGCGT
Right flanking sequence: Indices 455063 -- 455562
GACGGATGCGGTAGGCGACCCGGTGGCAGACGCGTCACCCTCGGAAGTGGGGAGCTCCACCTCCA
ACGCAGTGACAATGTTCTGCAAACTGCTCCCGGGGTAGCTCAACAGCTCGGGGTGGTACTGCTGC
CACTTGCCGTACTCGTTGGCCAAGTCAAACACCCGTGGGTGCTGCAAGTACGGGGGCAAAACCAC
CGCCTTGTCACGGGCCTCGCGAGGCAACTGCACCCGCATTTTCGCCACGTCCACCGTGACAAACG
AGAACTCGAGGTTGTGCCCGATGATCTCGCGCTGCATATAGTCGTCAAAGTGGTGCACGGCGTCT
TTGAACGACCCGGCCGCCCGCACGTGCTCCCAGCTCACCCCGTGCAACTGCGAGCAGTAGGGGGT
GATGGGGGTGTTGGAGGGGCGGATGAGCACCAGCTCGGTGTGGGTCACCTGGAGGGTGGCGGCGT
CGACCACGGCCCAGGCAAACTCGATCACCTCCGCCAGGTCTTTGG
Found at i:458778 original size:14 final size:14
Alignment explanation
Indices: 458761--458925 Score: 179
Period size: 14 Copynumber: 12.2 Consensus size: 14
458751 AGCAAGAAAG
*
458761 GAGAAGAAAGATAA
1 GAGAAGAAAGAGAA
458775 GAGAAGAAACGAGAA
1 GAGAAGAAA-GAGAA
* *
458790 GA-AGGGAAGA-AA
1 GAGAAGAAAGAGAA
458802 GAGAAGAAAGAGAA
1 GAGAAGAAAGAGAA
*
458816 GA-AAGAGAA-AAAA
1 GAGAAGA-AAGAGAA
458829 GAGAAGAAAGAGAA
1 GAGAAGAAAGAGAA
458843 GAGAAGAAAGAGAA
1 GAGAAGAAAGAGAA
458857 GAGAAGAAAGAGAA
1 GAGAAGAAAGAGAA
458871 GAGAAG-AA-AG--
1 GAGAAGAAAGAGAA
*
458881 G-GAAGTAAGAGAA
1 GAGAAGAAAGAGAA
458894 GAGAAGAAAGAGAA
1 GAGAAGAAAGAGAA
458908 GAG-AGTAGAAGAGAA
1 GAGAAG-A-AAGAGAA
458923 GAG
1 GAG
458926 GAATGAGTGA
Statistics
Matches: 130, Mismatches: 8, Indels: 25
0.80 0.05 0.15
Matches are distributed among these distances:
9 4 0.03
10 3 0.02
11 2 0.02
12 6 0.05
13 24 0.18
14 75 0.58
15 16 0.12
ACGTcount: A:0.62, C:0.01, G:0.36, T:0.02
Consensus pattern (14 bp):
GAGAAGAAAGAGAA
Left flanking sequence: Indices 458261 -- 458760
GATCCCGAACGAGTACGACCTCGGGTTCTTGAACGACAAGGAGATCGACGGGGACCGGGCTGAGA
TCCGCAAAACCACCAGTCACACCCGGTTGCTCCACTCGCTGTGGCTGCTGCTGCTGCTCAACAAC
TCCGAGCTTGCGCTGACAAACACCCCACCACCGCCCATGATGAGCAGCTCCCAGGAGCTCACGGG
GCTTGGGCAGGACGTACGGGAACTACTCATAAAATGCCGACACTCGCCTGGGCTCATGGCGTACG
CCAACTTCTTTTTCAACAACCGCTACAAGAACCGTTACTACAAGTTCAACACGGTGTACCAGATG
CGCCAGTTTATCAACAGGTACGGGGACTTTGAGTTGGACTGGAACGAGACCGGACAGGGGCTGAA
GTGCACGTACGACCCGCAGGGCATGAAGTGGAAGATTCCCATTTTGGGAGACCTTTCCGACAAAA
TGTAGCATGGTAGAAGTACATAGTCATGATCAACAAGCAAGAAAG
Right flanking sequence: Indices 458926 -- 459425
GAATGAGTGACCACTAGTCGTTTCCTGTGTTTACTGTGTTTACTGTCTTCCCCTTGTATCGAACA
CAGGTCGTTTATTTTTACCTGAAATATGTGACTGTTCCATGTCCAAGCACTCAGCTAAATCCTTC
CGCATTTCTAATTATACATTCTTGGCACGATTGTCGGGTTTACGATGCCGGGCTTACGATGTCGG
GCTAAACCGATAAAGGCGGGTTGGCGGCCGCCCACATCGAAGATCGGTATTTTCTACTAGCCATC
GTCAGTCTGCATCAGCATTAGAGTTTGACGAAAAAGCGCAAAGTATCGTCGGCCCGCCAAGAGCC
ACACCACTTGAAACGATCAACAGAAGATCTGTTGAGGATGCCCAGAACCGGGAGCAGCCAATCCA
TCCTGGTGAAATTACCCTACAGCGAGCTACATCAACAATGGCGATTCACCCGGGAATGTTAGTGT
TGCGATCACCGGTGCTTCAACTATACCCGAAAGGTTGCTATAGCA
Found at i:458781 original size:5 final size:5
Alignment explanation
Indices: 458761--458925 Score: 162
Period size: 5 Copynumber: 35.6 Consensus size: 5
458751 AGCAAGAAAG
* *
458761 GAGAA GA-AA GATAA GAGAA GA-AA CGAG-A -AGAA GGGAA GA-AA GAGAA
1 GAGAA GAGAA GAGAA GAGAA GAGAA -GAGAA GAGAA GAGAA GAGAA GAGAA
*
458807 GA-AA GAGAA GA-AA GAGAA -AAAA GAGAA GA-AA GAGAA GAGAA GA-AA
1 GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA
* *
458852 GAGAA GAGAA GA-AA GAGAA GAGAA GA-AA GGGAA G-TAA GAGAA GAGAA
1 GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA GAGAA
458899 GA-AA GAGAA GAG-A GTAGAA GAGAA GAG
1 GAGAA GAGAA GAGAA G-AGAA GAGAA GAG
458926 GAATGAGTGA
Statistics
Matches: 135, Mismatches: 8, Indels: 34
0.76 0.05 0.19
Matches are distributed among these distances:
3 2 0.01
4 46 0.34
5 85 0.63
6 2 0.01
ACGTcount: A:0.62, C:0.01, G:0.36, T:0.02
Consensus pattern (5 bp):
GAGAA
Left flanking sequence: Indices 458261 -- 458760
GATCCCGAACGAGTACGACCTCGGGTTCTTGAACGACAAGGAGATCGACGGGGACCGGGCTGAGA
TCCGCAAAACCACCAGTCACACCCGGTTGCTCCACTCGCTGTGGCTGCTGCTGCTGCTCAACAAC
TCCGAGCTTGCGCTGACAAACACCCCACCACCGCCCATGATGAGCAGCTCCCAGGAGCTCACGGG
GCTTGGGCAGGACGTACGGGAACTACTCATAAAATGCCGACACTCGCCTGGGCTCATGGCGTACG
CCAACTTCTTTTTCAACAACCGCTACAAGAACCGTTACTACAAGTTCAACACGGTGTACCAGATG
CGCCAGTTTATCAACAGGTACGGGGACTTTGAGTTGGACTGGAACGAGACCGGACAGGGGCTGAA
GTGCACGTACGACCCGCAGGGCATGAAGTGGAAGATTCCCATTTTGGGAGACCTTTCCGACAAAA
TGTAGCATGGTAGAAGTACATAGTCATGATCAACAAGCAAGAAAG
Right flanking sequence: Indices 458926 -- 459425
GAATGAGTGACCACTAGTCGTTTCCTGTGTTTACTGTGTTTACTGTCTTCCCCTTGTATCGAACA
CAGGTCGTTTATTTTTACCTGAAATATGTGACTGTTCCATGTCCAAGCACTCAGCTAAATCCTTC
CGCATTTCTAATTATACATTCTTGGCACGATTGTCGGGTTTACGATGCCGGGCTTACGATGTCGG
GCTAAACCGATAAAGGCGGGTTGGCGGCCGCCCACATCGAAGATCGGTATTTTCTACTAGCCATC
GTCAGTCTGCATCAGCATTAGAGTTTGACGAAAAAGCGCAAAGTATCGTCGGCCCGCCAAGAGCC
ACACCACTTGAAACGATCAACAGAAGATCTGTTGAGGATGCCCAGAACCGGGAGCAGCCAATCCA
TCCTGGTGAAATTACCCTACAGCGAGCTACATCAACAATGGCGATTCACCCGGGAATGTTAGTGT
TGCGATCACCGGTGCTTCAACTATACCCGAAAGGTTGCTATAGCA
Found at i:458809 original size:9 final size:9
Alignment explanation
Indices: 458764--458925 Score: 163
Period size: 9 Copynumber: 17.6 Consensus size: 9
458754 AAGAAAGGAG
458764 AAGA-AAGA
1 AAGAGAAGA
458772 TAAGAGAAGA
1 -AAGAGAAGA
458782 AACGAGAAG-
1 AA-GAGAAGA
*
458791 AAGGGAAGA
1 AAGAGAAGA
458800 AAGAGAAGA
1 AAGAGAAGA
458809 AAGAGAAGA
1 AAGAGAAGA
*
458818 AAGAGAAAA
1 AAGAGAAGA
458827 AAGAGAAGA
1 AAGAGAAGA
458836 AAGAGAAGA
1 AAGAGAAGA
458845 GAAGA-AAGA
1 -AAGAGAAGA
458854 GAAGAGAAGA
1 -AAGAGAAGA
458864 AAGAGAAGA
1 AAGAGAAGA
*
458873 GAAGA-AAGGG
1 -AAGAGAA-GA
*
458883 AAG-TAAGA
1 AAGAGAAGA
458891 GAAGAGAAGA
1 -AAGAGAAGA
458901 AAGAGAAGA
1 AAGAGAAGA
*
458910 GAGTAGAAGA
1 AAG-AGAAGA
458920 GAAGAG
1 -AAGAG
458926 GAATGAGTGA
Statistics
Matches: 132, Mismatches: 9, Indels: 23
0.80 0.05 0.14
Matches are distributed among these distances:
8 6 0.05
9 89 0.67
10 35 0.27
11 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.35, T:0.02
Consensus pattern (9 bp):
AAGAGAAGA
Left flanking sequence: Indices 458264 -- 458763
CCCGAACGAGTACGACCTCGGGTTCTTGAACGACAAGGAGATCGACGGGGACCGGGCTGAGATCC
GCAAAACCACCAGTCACACCCGGTTGCTCCACTCGCTGTGGCTGCTGCTGCTGCTCAACAACTCC
GAGCTTGCGCTGACAAACACCCCACCACCGCCCATGATGAGCAGCTCCCAGGAGCTCACGGGGCT
TGGGCAGGACGTACGGGAACTACTCATAAAATGCCGACACTCGCCTGGGCTCATGGCGTACGCCA
ACTTCTTTTTCAACAACCGCTACAAGAACCGTTACTACAAGTTCAACACGGTGTACCAGATGCGC
CAGTTTATCAACAGGTACGGGGACTTTGAGTTGGACTGGAACGAGACCGGACAGGGGCTGAAGTG
CACGTACGACCCGCAGGGCATGAAGTGGAAGATTCCCATTTTGGGAGACCTTTCCGACAAAATGT
AGCATGGTAGAAGTACATAGTCATGATCAACAAGCAAGAAAGGAG
Right flanking sequence: Indices 458926 -- 459425
GAATGAGTGACCACTAGTCGTTTCCTGTGTTTACTGTGTTTACTGTCTTCCCCTTGTATCGAACA
CAGGTCGTTTATTTTTACCTGAAATATGTGACTGTTCCATGTCCAAGCACTCAGCTAAATCCTTC
CGCATTTCTAATTATACATTCTTGGCACGATTGTCGGGTTTACGATGCCGGGCTTACGATGTCGG
GCTAAACCGATAAAGGCGGGTTGGCGGCCGCCCACATCGAAGATCGGTATTTTCTACTAGCCATC
GTCAGTCTGCATCAGCATTAGAGTTTGACGAAAAAGCGCAAAGTATCGTCGGCCCGCCAAGAGCC
ACACCACTTGAAACGATCAACAGAAGATCTGTTGAGGATGCCCAGAACCGGGAGCAGCCAATCCA
TCCTGGTGAAATTACCCTACAGCGAGCTACATCAACAATGGCGATTCACCCGGGAATGTTAGTGT
TGCGATCACCGGTGCTTCAACTATACCCGAAAGGTTGCTATAGCA
Found at i:459112 original size:14 final size:14
Alignment explanation
Indices: 459090--459123 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
459080 GCACGATTGT
*
459090 CGGGTTTACGATGC
1 CGGGCTTACGATGC
*
459104 CGGGCTTACGATGT
1 CGGGCTTACGATGC
459118 CGGGCT
1 CGGGCT
459124 AAACCGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.24, G:0.38, T:0.26
Consensus pattern (14 bp):
CGGGCTTACGATGC
Left flanking sequence: Indices 458590 -- 459089
AGTTTATCAACAGGTACGGGGACTTTGAGTTGGACTGGAACGAGACCGGACAGGGGCTGAAGTGC
ACGTACGACCCGCAGGGCATGAAGTGGAAGATTCCCATTTTGGGAGACCTTTCCGACAAAATGTA
GCATGGTAGAAGTACATAGTCATGATCAACAAGCAAGAAAGGAGAAGAAAGATAAGAGAAGAAAC
GAGAAGAAGGGAAGAAAGAGAAGAAAGAGAAGAAAGAGAAAAAAGAGAAGAAAGAGAAGAGAAGA
AAGAGAAGAGAAGAAAGAGAAGAGAAGAAAGGGAAGTAAGAGAAGAGAAGAAAGAGAAGAGAGTA
GAAGAGAAGAGGAATGAGTGACCACTAGTCGTTTCCTGTGTTTACTGTGTTTACTGTCTTCCCCT
TGTATCGAACACAGGTCGTTTATTTTTACCTGAAATATGTGACTGTTCCATGTCCAAGCACTCAG
CTAAATCCTTCCGCATTTCTAATTATACATTCTTGGCACGATTGT
Right flanking sequence: Indices 459124 -- 459623
AAACCGATAAAGGCGGGTTGGCGGCCGCCCACATCGAAGATCGGTATTTTCTACTAGCCATCGTC
AGTCTGCATCAGCATTAGAGTTTGACGAAAAAGCGCAAAGTATCGTCGGCCCGCCAAGAGCCACA
CCACTTGAAACGATCAACAGAAGATCTGTTGAGGATGCCCAGAACCGGGAGCAGCCAATCCATCC
TGGTGAAATTACCCTACAGCGAGCTACATCAACAATGGCGATTCACCCGGGAATGTTAGTGTTGC
GATCACCGGTGCTTCAACTATACCCGAAAGGTTGCTATAGCACGACATCTCGTAATTCGGGTCAC
CCAAATTCCGCAAAGCTTATTCGCATTGCTGACGAGGAGGGGTGCTGGACCCTTTATTTACGGAA
TGTATATTTACGGGGTACCTGAGTGGTACGACAGCCACCAGGGGCTTGCCATTGACCCACGCACA
GCAAAAATTCCAGGGCCCCCTGATGCCGACAAGATCCAGAACATG
Found at i:460689 original size:18 final size:16
Alignment explanation
Indices: 460637--460696 Score: 93
Period size: 16 Copynumber: 3.6 Consensus size: 16
460627 TATGTCGTAT
460637 AGCAGACTGCAACCAA
1 AGCAGACTGCAACCAA
*
460653 AGCGGACTGCAACCAA
1 AGCAGACTGCAACCAA
460669 AGCAGACTGCAACCACAA
1 AGCAGACTGCAA-C-CAA
460687 AGCAGACTGC
1 AGCAGACTGC
460697 TGGGTTCACA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
16 26 0.65
17 1 0.03
18 13 0.32
ACGTcount: A:0.40, C:0.32, G:0.22, T:0.07
Consensus pattern (16 bp):
AGCAGACTGCAACCAA
Left flanking sequence: Indices 460137 -- 460636
GCAGGGCTTCGGCTCCGGCAGTTGTCGCCCGTACAGATCCGCGAGTTGACCACCGACATCTACTT
TGAGATGGCCCGGCGACGGGGTCTTCGCAAAATGCCCGCGCCCACGTTGGACTACACCCGGATCG
AGGCCCGTCACAAGATGGCCAACTTGAGCAACCCGACGTTCCGGGACCTTGTGGTGGACATGTGC
TCTGAGTTTGAGCGCCGCAACGAGGCGGTGATGATTTGATTGCCGGCAATTGAATACGTGATACC
CTGTAATATACTAATACATAGAAGCTTAAAGGGTGTAGACGAGGTGGACGGTGGTAGACGATGGC
GGTGGATGCAGGGCGGTGATCTAGACCGGTAGACGGTGGTGGTTTCAGGTGGGAATGCGTTTCAG
GTGTGAAAAATTATGGGAACGAGGGGCAGTGGAGGGGCCACGGACCAACGCGTCTGGTCAGGCGT
AGCGCGGTTGTGGCCGTTTCAAACAATGTCCGATGTATGTCGTAT
Right flanking sequence: Indices 460697 -- 461196
TGGGTTCACAAAACGATGGAAATTTCAGAGCCACAACAGGAAGTCGTCGTATATGTCCTGGTATC
TACTAAAATTAAGAACAGCCAACTCATCTCCTTTCCTCATCGCTTGAGATGGCCCCTGTCGAGAT
GGTCCCTCTCGCTTATGCCTGTTTCAGCCGCGCGATATGAAACGCCACCAAGGATCGCGTAAACA
AGAAACAAAGCCCAACAACCAAAGTAAGCACCATCAGTTTCAGAAAATAATCAAACAGCAATTCA
ACACCACCCAACCCCTTCCCTACCTTCTCCCCTCCCCTTTTCCCTCTCCACGCCACAACTCAATT
CCCCATCCATCTCACAGCCGCATCCGCGCGGCGCACGCACTTATCAACGCAACCGTCCGGTGACC
CACCATCCACAATTCCGGGCAAACGAAGCAATCTCCTCCGGCGGGCCTCGCGTTTTTTACTCGAC
AAATTCGCTCTGTCCCGCAACCCGTCGCGCGTTCGCTCCCTCGTC
Found at i:462805 original size:12 final size:12
Alignment explanation
Indices: 462784--462833 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
462774 TCGGAGACCC
*
462784 ACCACCGCTCTG
1 ACCACGGCTCTG
462796 ACCACGGCTCTG
1 ACCACGGCTCTG
*
462808 ACCACGGCCCTG
1 ACCACGGCTCTG
*
462820 ACCACTGCTCTG
1 ACCACGGCTCTG
462832 AC
1 AC
462834 GGCCCTGAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.18, C:0.46, G:0.20, T:0.16
Consensus pattern (12 bp):
ACCACGGCTCTG
Left flanking sequence: Indices 462284 -- 462783
TTGACCAGAAGGACTTTATTTGTATCGGGGACCTGGGCGAGTCGGACTTGGAGGCGTATGTGGAC
GTGGCCCGCCAGTTTCCCTCGCGGGTGTTGGCTGTGTACATCCGGTTTGTCGAGAACTCGCTCAG
TGACCTCGACGACCTGGTGATCTTTGCCAAGGTGTGTGAGATCGTGGACCGGTACAACCAGACGA
TTTCCGAGCGGGAGGCGGCTGGCAAGGGTCCCACCGCGAAGCCCATCCAGCCCAGCGAGTCTCAG
GAGACCACCGCAGAGGACATGCCCGATCTCATCGACTTGGACACCCCGGTGAAGCCTATGAAGCC
CGCGAAACCGAGCCTGCTCCGGGCACCCGCGATCAAGCCCAAGCCCGCGGCGTTGCGCGTGCGCG
AGGTGAAGGCGACCGACGAGCCGGACATGCCTGGCTCGCCTCTGAGTCTCACCTACGACCAGGAG
GAGACTCTTCGCGACGAAGTGGCGCCGCCTTTGCCTCGGAGACCC
Right flanking sequence: Indices 462834 -- 463333
GGCCCTGAGCCGCAACTCGCGCACGTCGACGATGATCCACGACTCCGACGGGTCATTGGCCCAGG
ACATCTTTGTTGACCTCGAGGAGACCGATCGCCGCGGGGCAGACTGGATCGTCAGAATCCGCACT
GCTGTGGCCAAGCTCCAGGGCACCCACACCAAGCTCCGGTTGTTCCGCGACGACGACCCAGCATT
TTTTGAAAACTGCCACAAGGCCCTCCATAAGGAATTGAATCGGTTGGAGGAGATGACGAAAGAGA
TGCCCAACGACGAACGACGAAAAGGTATTTAGCATTGCATAGGAATAAGGCTAGGATATGACTGG
AAAGTAGAGGTGTTTGGGGGCAAACTTTATTGACTGCAAACTTGGCTGTAACTTGGCTGCAAACT
AGGCTGCAAACTAGGTTGCAAACTTGGTTGCAAATTCTATGACTTATGCAAAGTTGACGTGGTTG
CAGAAAAATATGTATGAAGAAGTTGATTGGGTGCTCTGGAGCTAT
Found at i:462837 original size:21 final size:22
Alignment explanation
Indices: 462793--462841 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 22
462783 CACCACCGCT
462793 CTGACCACGGCTCTGACCACGGCC
1 CTGACCACGGCTCTG--CACGGCC
*
462817 CTGACCACTGCTCTG-ACGGCC
1 CTGACCACGGCTCTGCACGGCC
462838 CTGA
1 CTGA
462842 GCCGCAACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 10 0.42
24 14 0.58
ACGTcount: A:0.16, C:0.43, G:0.24, T:0.16
Consensus pattern (22 bp):
CTGACCACGGCTCTGCACGGCC
Left flanking sequence: Indices 462293 -- 462792
AGGACTTTATTTGTATCGGGGACCTGGGCGAGTCGGACTTGGAGGCGTATGTGGACGTGGCCCGC
CAGTTTCCCTCGCGGGTGTTGGCTGTGTACATCCGGTTTGTCGAGAACTCGCTCAGTGACCTCGA
CGACCTGGTGATCTTTGCCAAGGTGTGTGAGATCGTGGACCGGTACAACCAGACGATTTCCGAGC
GGGAGGCGGCTGGCAAGGGTCCCACCGCGAAGCCCATCCAGCCCAGCGAGTCTCAGGAGACCACC
GCAGAGGACATGCCCGATCTCATCGACTTGGACACCCCGGTGAAGCCTATGAAGCCCGCGAAACC
GAGCCTGCTCCGGGCACCCGCGATCAAGCCCAAGCCCGCGGCGTTGCGCGTGCGCGAGGTGAAGG
CGACCGACGAGCCGGACATGCCTGGCTCGCCTCTGAGTCTCACCTACGACCAGGAGGAGACTCTT
CGCGACGAAGTGGCGCCGCCTTTGCCTCGGAGACCCACCACCGCT
Right flanking sequence: Indices 462842 -- 463341
GCCGCAACTCGCGCACGTCGACGATGATCCACGACTCCGACGGGTCATTGGCCCAGGACATCTTT
GTTGACCTCGAGGAGACCGATCGCCGCGGGGCAGACTGGATCGTCAGAATCCGCACTGCTGTGGC
CAAGCTCCAGGGCACCCACACCAAGCTCCGGTTGTTCCGCGACGACGACCCAGCATTTTTTGAAA
ACTGCCACAAGGCCCTCCATAAGGAATTGAATCGGTTGGAGGAGATGACGAAAGAGATGCCCAAC
GACGAACGACGAAAAGGTATTTAGCATTGCATAGGAATAAGGCTAGGATATGACTGGAAAGTAGA
GGTGTTTGGGGGCAAACTTTATTGACTGCAAACTTGGCTGTAACTTGGCTGCAAACTAGGCTGCA
AACTAGGTTGCAAACTTGGTTGCAAATTCTATGACTTATGCAAAGTTGACGTGGTTGCAGAAAAA
TATGTATGAAGAAGTTGATTGGGTGCTCTGGAGCTATGAAGAAGG
Found at i:463228 original size:12 final size:12
Alignment explanation
Indices: 463192--463257 Score: 80
Period size: 12 Copynumber: 5.6 Consensus size: 12
463182 ACTTTATTGA
463192 CTGCAAACTTGG
1 CTGCAAACTTGG
*
463204 CTG-TAACTTGG
1 CTGCAAACTTGG
*
463215 CTGCAAACTAGG
1 CTGCAAACTTGG
*
463227 CTGCAAACTAGG
1 CTGCAAACTTGG
*
463239 TTGCAAACTTGG
1 CTGCAAACTTGG
*
463251 TTGCAAA
1 CTGCAAA
463258 TTCTATGACT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
11 10 0.21
12 38 0.79
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (12 bp):
CTGCAAACTTGG
Left flanking sequence: Indices 462692 -- 463191
AGCCGGACATGCCTGGCTCGCCTCTGAGTCTCACCTACGACCAGGAGGAGACTCTTCGCGACGAA
GTGGCGCCGCCTTTGCCTCGGAGACCCACCACCGCTCTGACCACGGCTCTGACCACGGCCCTGAC
CACTGCTCTGACGGCCCTGAGCCGCAACTCGCGCACGTCGACGATGATCCACGACTCCGACGGGT
CATTGGCCCAGGACATCTTTGTTGACCTCGAGGAGACCGATCGCCGCGGGGCAGACTGGATCGTC
AGAATCCGCACTGCTGTGGCCAAGCTCCAGGGCACCCACACCAAGCTCCGGTTGTTCCGCGACGA
CGACCCAGCATTTTTTGAAAACTGCCACAAGGCCCTCCATAAGGAATTGAATCGGTTGGAGGAGA
TGACGAAAGAGATGCCCAACGACGAACGACGAAAAGGTATTTAGCATTGCATAGGAATAAGGCTA
GGATATGACTGGAAAGTAGAGGTGTTTGGGGGCAAACTTTATTGA
Right flanking sequence: Indices 463258 -- 463757
TTCTATGACTTATGCAAAGTTGACGTGGTTGCAGAAAAATATGTATGAAGAAGTTGATTGGGTGC
TCTGGAGCTATGAAGAAGGTGATTTGGTGCTCTAGAGCTATGAAGAAGGTGATTTGGTGCTCTGG
AGCTATGAAGAAGTTGATTTGGTGCTCTAGAGCTATGGTGATTACTTAATTATGACTATAGCTGC
TGAGTTCCGTGACCACTCACCGGAAGTAGTCGTCCTCGGCGTTGATCTCCAACGGGTTCCACTCC
ACGCCCACGTACTGCGCAAACAGCGTAAGCGCCTGCGGGTGGTTCTGGAAGGCGGCTGCCAGGTA
GTAGCTGTACACCTCCTTGTCGGCCGTCGACAGCGTCGGGAGACCCAGCGGAAACAGCACTCCCG
ACGGCGGCTCACAGAGCTTCGAAAAGTCGAACTGGGCCCGGTAGAAGTGGTCGTTGGTGGCGCTG
ACGTCAAACTCAAGCGCCTGGGACTCCTCTCCCTTCTTCTGCTCC
Found at i:463337 original size:30 final size:30
Alignment explanation
Indices: 463301--463424 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
463291 GAAAAATATG
* * *
463301 TATGAAGAAGTTGATTGGGTGCTCTGGAGC
1 TATGAAGAAGGTGATTTGGTGCTCTAGAGC
463331 TATGAAGAAGGTGATTTGGTGCTCTAGAGC
1 TATGAAGAAGGTGATTTGGTGCTCTAGAGC
*
463361 TATGAAGAAGGTGATTTGGTGCTCTGGAGC
1 TATGAAGAAGGTGATTTGGTGCTCTAGAGC
*
463391 TATGAAGAAGTTGATTTGGTGCTCTAGAGC
1 TATGAAGAAGGTGATTTGGTGCTCTAGAGC
463421 TATG
1 TATG
463425 GTGATTACTT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 88 1.00
ACGTcount: A:0.25, C:0.10, G:0.34, T:0.31
Consensus pattern (30 bp):
TATGAAGAAGGTGATTTGGTGCTCTAGAGC
Left flanking sequence: Indices 462801 -- 463300
GGCTCTGACCACGGCCCTGACCACTGCTCTGACGGCCCTGAGCCGCAACTCGCGCACGTCGACGA
TGATCCACGACTCCGACGGGTCATTGGCCCAGGACATCTTTGTTGACCTCGAGGAGACCGATCGC
CGCGGGGCAGACTGGATCGTCAGAATCCGCACTGCTGTGGCCAAGCTCCAGGGCACCCACACCAA
GCTCCGGTTGTTCCGCGACGACGACCCAGCATTTTTTGAAAACTGCCACAAGGCCCTCCATAAGG
AATTGAATCGGTTGGAGGAGATGACGAAAGAGATGCCCAACGACGAACGACGAAAAGGTATTTAG
CATTGCATAGGAATAAGGCTAGGATATGACTGGAAAGTAGAGGTGTTTGGGGGCAAACTTTATTG
ACTGCAAACTTGGCTGTAACTTGGCTGCAAACTAGGCTGCAAACTAGGTTGCAAACTTGGTTGCA
AATTCTATGACTTATGCAAAGTTGACGTGGTTGCAGAAAAATATG
Right flanking sequence: Indices 463425 -- 463924
GTGATTACTTAATTATGACTATAGCTGCTGAGTTCCGTGACCACTCACCGGAAGTAGTCGTCCTC
GGCGTTGATCTCCAACGGGTTCCACTCCACGCCCACGTACTGCGCAAACAGCGTAAGCGCCTGCG
GGTGGTTCTGGAAGGCGGCTGCCAGGTAGTAGCTGTACACCTCCTTGTCGGCCGTCGACAGCGTC
GGGAGACCCAGCGGAAACAGCACTCCCGACGGCGGCTCACAGAGCTTCGAAAAGTCGAACTGGGC
CCGGTAGAAGTGGTCGTTGGTGGCGCTGACGTCAAACTCAAGCGCCTGGGACTCCTCTCCCTTCT
TCTGCTCCTCGTCCTCATCAATAACCGGCTGTTTCGGTGCTGGCTGGGGTGCTCGTTTCCGGGAC
TGGAAAGGACTGAGGTGGGGGTTCCAGTCCTCGTCGCTCATGCCAAAGTACCGGGCCGTCAGGTT
CATCGTGAACTGGAACACCTCCGTGAACAGCTGGAACTTTTTGGC
Found at i:467564 original size:14 final size:14
Alignment explanation
Indices: 467545--467583 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
467535 GGTGGCGCAG
467545 TGGTGGCAGTGTGA
1 TGGTGGCAGTGTGA
467559 TGGTGGCAGTGTGA
1 TGGTGGCAGTGTGA
467573 TGGTGGCAGTG
1 TGGTGGCAGTG
467584 CGGTATTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.13, C:0.08, G:0.51, T:0.28
Consensus pattern (14 bp):
TGGTGGCAGTGTGA
Left flanking sequence: Indices 467045 -- 467544
AAAAAATATCGGTTCTAACTGACATGGTGGGTTGGAGGTCGAAGCGGGGAAGGGTCCCATGCGGG
CAAAGAATAGACGAGGGTGGTTTATTGGCCAATAGGTGGTGTTGTTTTGTTTACCTCTTCGGAGT
GGTTGGCCATCATCTTTGTTGTCCTTGCCCGTCCACCGAGTGTTCTACATTCAATGCTCATTTTT
CGGACAAAATTGCCCACCAATGACTACTGATCCCCTGAAGTTTTTGAGCGACATCATCGGGTCCC
TGGTGGTGGTCAAGTTGCACAATGGCATCACCTACTCCGGGCTGCTCCAGCTGATTGACGGCTAC
ATGAACATTGTGTTGGAGGAGGGCAACGAAATGCTTGGCGACGAGGTGACCAAGAAGTGGGGCGA
CGTGTTTATTCGCGGGAACAACGGTAAGTGAGATACTAAGAGTGCCATGGGTGGGTGAAATGGTG
ATAGGGAACGTTCCAGGCTGGTTTATTGTTCTACTGGTGGCGCAG
Right flanking sequence: Indices 467584 -- 468083
CGGTATTATAGTGGCAATGCGCTGGTGTTACAGTGTTGTTACAGTGTTTTTACAGTGCTGTTATG
GTGCTGTTACGGTGCTGTTACAATGCTGTTATGGTGCTGTCATGGTGCTGTCATGGTGCTGTCAT
GGTGCTGTTACGGTGCTCTTACGGTGCTCTTACGGTGTTTTGATACTCGTATTGGCACATTGCTA
CTAAAGAGTTTCGTCAGTGCTACTGCAGTGCTCCCACGGCGCTTTCATAGTGCAAGCACGCCAAC
AGAATTGTGCTACTGTTCAAGCCCGTGCTACTGTTCAAGCCCATCCCCAGTTATTGAATTTTCTC
AGCCTAGAGTCAAACCCTGAAACATACGAGAGGAGTTCTCAACCATCATTCAAATACTAACTTCT
AGTGTTGTACATTAGCGAAGCTTAACCAACGAAACGAGAAACGATGTAACATATCTTAATACTAC
AAAGACGAAAATTGCGAAAGTCCGAACAAGGACGAATAGAGGCCT
Found at i:467625 original size:11 final size:11
Alignment explanation
Indices: 467609--467679 Score: 79
Period size: 11 Copynumber: 6.5 Consensus size: 11
467599 AATGCGCTGG
*
467609 TGTTACAGTGT
1 TGTTACAGTGC
*
467620 TGTTACAGTGT
1 TGTTACAGTGC
*
467631 TTTTACAGTGC
1 TGTTACAGTGC
**
467642 TGTTATGGTGC
1 TGTTACAGTGC
*
467653 TGTTACGGTGC
1 TGTTACAGTGC
*
467664 TGTTACAATGC
1 TGTTACAGTGC
467675 TGTTA
1 TGTTA
467680 TGGTGCTGTC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 52 1.00
ACGTcount: A:0.17, C:0.13, G:0.27, T:0.44
Consensus pattern (11 bp):
TGTTACAGTGC
Left flanking sequence: Indices 467109 -- 467608
GCAAAGAATAGACGAGGGTGGTTTATTGGCCAATAGGTGGTGTTGTTTTGTTTACCTCTTCGGAG
TGGTTGGCCATCATCTTTGTTGTCCTTGCCCGTCCACCGAGTGTTCTACATTCAATGCTCATTTT
TCGGACAAAATTGCCCACCAATGACTACTGATCCCCTGAAGTTTTTGAGCGACATCATCGGGTCC
CTGGTGGTGGTCAAGTTGCACAATGGCATCACCTACTCCGGGCTGCTCCAGCTGATTGACGGCTA
CATGAACATTGTGTTGGAGGAGGGCAACGAAATGCTTGGCGACGAGGTGACCAAGAAGTGGGGCG
ACGTGTTTATTCGCGGGAACAACGGTAAGTGAGATACTAAGAGTGCCATGGGTGGGTGAAATGGT
GATAGGGAACGTTCCAGGCTGGTTTATTGTTCTACTGGTGGCGCAGTGGTGGCAGTGTGATGGTG
GCAGTGTGATGGTGGCAGTGCGGTATTATAGTGGCAATGCGCTGG
Right flanking sequence: Indices 467680 -- 468179
TGGTGCTGTCATGGTGCTGTCATGGTGCTGTCATGGTGCTGTTACGGTGCTCTTACGGTGCTCTT
ACGGTGTTTTGATACTCGTATTGGCACATTGCTACTAAAGAGTTTCGTCAGTGCTACTGCAGTGC
TCCCACGGCGCTTTCATAGTGCAAGCACGCCAACAGAATTGTGCTACTGTTCAAGCCCGTGCTAC
TGTTCAAGCCCATCCCCAGTTATTGAATTTTCTCAGCCTAGAGTCAAACCCTGAAACATACGAGA
GGAGTTCTCAACCATCATTCAAATACTAACTTCTAGTGTTGTACATTAGCGAAGCTTAACCAACG
AAACGAGAAACGATGTAACATATCTTAATACTACAAAGACGAAAATTGCGAAAGTCCGAACAAGG
ACGAATAGAGGCCTAGATGACTAGGCGTCGCGCTGATGGAACCAGCATTCCTATAAATAAGCGAA
ACAAATCGATCAATTGACCACGGTACAGAACTCAGCACGTTTGGC
Found at i:467646 original size:33 final size:33
Alignment explanation
Indices: 467609--467688 Score: 79
Period size: 33 Copynumber: 2.4 Consensus size: 33
467599 AATGCGCTGG
* * * *
467609 TGTTACAGTGTTGTTACAGTGTTTTTACAGTGC
1 TGTTACAGTGCTGTTACAGTGCTGTTACAATGC
** *
467642 TGTTATGGTGCTGTTACGGTGCTGTTACAATGC
1 TGTTACAGTGCTGTTACAGTGCTGTTACAATGC
**
467675 TGTTATGGTGCTGT
1 TGTTACAGTGCTGT
467689 CATGGTGCTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.15, C:0.12, G:0.29, T:0.44
Consensus pattern (33 bp):
TGTTACAGTGCTGTTACAGTGCTGTTACAATGC
Left flanking sequence: Indices 467109 -- 467608
GCAAAGAATAGACGAGGGTGGTTTATTGGCCAATAGGTGGTGTTGTTTTGTTTACCTCTTCGGAG
TGGTTGGCCATCATCTTTGTTGTCCTTGCCCGTCCACCGAGTGTTCTACATTCAATGCTCATTTT
TCGGACAAAATTGCCCACCAATGACTACTGATCCCCTGAAGTTTTTGAGCGACATCATCGGGTCC
CTGGTGGTGGTCAAGTTGCACAATGGCATCACCTACTCCGGGCTGCTCCAGCTGATTGACGGCTA
CATGAACATTGTGTTGGAGGAGGGCAACGAAATGCTTGGCGACGAGGTGACCAAGAAGTGGGGCG
ACGTGTTTATTCGCGGGAACAACGGTAAGTGAGATACTAAGAGTGCCATGGGTGGGTGAAATGGT
GATAGGGAACGTTCCAGGCTGGTTTATTGTTCTACTGGTGGCGCAGTGGTGGCAGTGTGATGGTG
GCAGTGTGATGGTGGCAGTGCGGTATTATAGTGGCAATGCGCTGG
Right flanking sequence: Indices 467689 -- 468188
CATGGTGCTGTCATGGTGCTGTCATGGTGCTGTTACGGTGCTCTTACGGTGCTCTTACGGTGTTT
TGATACTCGTATTGGCACATTGCTACTAAAGAGTTTCGTCAGTGCTACTGCAGTGCTCCCACGGC
GCTTTCATAGTGCAAGCACGCCAACAGAATTGTGCTACTGTTCAAGCCCGTGCTACTGTTCAAGC
CCATCCCCAGTTATTGAATTTTCTCAGCCTAGAGTCAAACCCTGAAACATACGAGAGGAGTTCTC
AACCATCATTCAAATACTAACTTCTAGTGTTGTACATTAGCGAAGCTTAACCAACGAAACGAGAA
ACGATGTAACATATCTTAATACTACAAAGACGAAAATTGCGAAAGTCCGAACAAGGACGAATAGA
GGCCTAGATGACTAGGCGTCGCGCTGATGGAACCAGCATTCCTATAAATAAGCGAAACAAATCGA
TCAATTGACCACGGTACAGAACTCAGCACGTTTGGCCATTCACAG
Found at i:467658 original size:22 final size:22
Alignment explanation
Indices: 467609--467750 Score: 122
Period size: 22 Copynumber: 6.5 Consensus size: 22
467599 AATGCGCTGG
* * * *
467609 TGTTACAGTGTTGTTACAGTGT
1 TGTTACGGTGCTGTTACGGTGC
* * *
467631 TTTTACAGTGCTGTTATGGTGC
1 TGTTACGGTGCTGTTACGGTGC
**
467653 TGTTACGGTGCTGTTACAATGC
1 TGTTACGGTGCTGTTACGGTGC
* * *
467675 TGTTATGGTGCTGTCATGGTGC
1 TGTTACGGTGCTGTTACGGTGC
* * * *
467697 TGTCATGGTGCTGTCATGGTGC
1 TGTTACGGTGCTGTTACGGTGC
*
467719 TGTTACGGTGCTCTTACGGTGC
1 TGTTACGGTGCTGTTACGGTGC
*
467741 TCTTACGGTG
1 TGTTACGGTG
467751 TTTTGATACT
Statistics
Matches: 98, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 98 1.00
ACGTcount: A:0.13, C:0.16, G:0.31, T:0.40
Consensus pattern (22 bp):
TGTTACGGTGCTGTTACGGTGC
Left flanking sequence: Indices 467109 -- 467608
GCAAAGAATAGACGAGGGTGGTTTATTGGCCAATAGGTGGTGTTGTTTTGTTTACCTCTTCGGAG
TGGTTGGCCATCATCTTTGTTGTCCTTGCCCGTCCACCGAGTGTTCTACATTCAATGCTCATTTT
TCGGACAAAATTGCCCACCAATGACTACTGATCCCCTGAAGTTTTTGAGCGACATCATCGGGTCC
CTGGTGGTGGTCAAGTTGCACAATGGCATCACCTACTCCGGGCTGCTCCAGCTGATTGACGGCTA
CATGAACATTGTGTTGGAGGAGGGCAACGAAATGCTTGGCGACGAGGTGACCAAGAAGTGGGGCG
ACGTGTTTATTCGCGGGAACAACGGTAAGTGAGATACTAAGAGTGCCATGGGTGGGTGAAATGGT
GATAGGGAACGTTCCAGGCTGGTTTATTGTTCTACTGGTGGCGCAGTGGTGGCAGTGTGATGGTG
GCAGTGTGATGGTGGCAGTGCGGTATTATAGTGGCAATGCGCTGG
Right flanking sequence: Indices 467751 -- 468250
TTTTGATACTCGTATTGGCACATTGCTACTAAAGAGTTTCGTCAGTGCTACTGCAGTGCTCCCAC
GGCGCTTTCATAGTGCAAGCACGCCAACAGAATTGTGCTACTGTTCAAGCCCGTGCTACTGTTCA
AGCCCATCCCCAGTTATTGAATTTTCTCAGCCTAGAGTCAAACCCTGAAACATACGAGAGGAGTT
CTCAACCATCATTCAAATACTAACTTCTAGTGTTGTACATTAGCGAAGCTTAACCAACGAAACGA
GAAACGATGTAACATATCTTAATACTACAAAGACGAAAATTGCGAAAGTCCGAACAAGGACGAAT
AGAGGCCTAGATGACTAGGCGTCGCGCTGATGGAACCAGCATTCCTATAAATAAGCGAAACAAAT
CGATCAATTGACCACGGTACAGAACTCAGCACGTTTGGCCATTCACAGCAGCAAGTTACTTCCGA
CAATATTGAACTGCGAACAGTCTAAGCCGTTAGTGTTGACAAGAA
Found at i:467686 original size:11 final size:11
Alignment explanation
Indices: 467638--467741 Score: 118
Period size: 11 Copynumber: 9.5 Consensus size: 11
467628 TGTTTTTACA
467638 GTGCTGTTATG
1 GTGCTGTTATG
*
467649 GTGCTGTTACG
1 GTGCTGTTATG
**
467660 GTGCTGTTACA
1 GTGCTGTTATG
*
467671 ATGCTGTTATG
1 GTGCTGTTATG
*
467682 GTGCTGTCATG
1 GTGCTGTTATG
*
467693 GTGCTGTCATG
1 GTGCTGTTATG
*
467704 GTGCTGTCATG
1 GTGCTGTTATG
*
467715 GTGCTGTTACG
1 GTGCTGTTATG
* *
467726 GTGCTCTTACG
1 GTGCTGTTATG
467737 GTGCT
1 GTGCT
467742 CTTACGGTGT
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 83 1.00
ACGTcount: A:0.11, C:0.17, G:0.34, T:0.38
Consensus pattern (11 bp):
GTGCTGTTATG
Left flanking sequence: Indices 467138 -- 467637
CCAATAGGTGGTGTTGTTTTGTTTACCTCTTCGGAGTGGTTGGCCATCATCTTTGTTGTCCTTGC
CCGTCCACCGAGTGTTCTACATTCAATGCTCATTTTTCGGACAAAATTGCCCACCAATGACTACT
GATCCCCTGAAGTTTTTGAGCGACATCATCGGGTCCCTGGTGGTGGTCAAGTTGCACAATGGCAT
CACCTACTCCGGGCTGCTCCAGCTGATTGACGGCTACATGAACATTGTGTTGGAGGAGGGCAACG
AAATGCTTGGCGACGAGGTGACCAAGAAGTGGGGCGACGTGTTTATTCGCGGGAACAACGGTAAG
TGAGATACTAAGAGTGCCATGGGTGGGTGAAATGGTGATAGGGAACGTTCCAGGCTGGTTTATTG
TTCTACTGGTGGCGCAGTGGTGGCAGTGTGATGGTGGCAGTGTGATGGTGGCAGTGCGGTATTAT
AGTGGCAATGCGCTGGTGTTACAGTGTTGTTACAGTGTTTTTACA
Right flanking sequence: Indices 467742 -- 468241
CTTACGGTGTTTTGATACTCGTATTGGCACATTGCTACTAAAGAGTTTCGTCAGTGCTACTGCAG
TGCTCCCACGGCGCTTTCATAGTGCAAGCACGCCAACAGAATTGTGCTACTGTTCAAGCCCGTGC
TACTGTTCAAGCCCATCCCCAGTTATTGAATTTTCTCAGCCTAGAGTCAAACCCTGAAACATACG
AGAGGAGTTCTCAACCATCATTCAAATACTAACTTCTAGTGTTGTACATTAGCGAAGCTTAACCA
ACGAAACGAGAAACGATGTAACATATCTTAATACTACAAAGACGAAAATTGCGAAAGTCCGAACA
AGGACGAATAGAGGCCTAGATGACTAGGCGTCGCGCTGATGGAACCAGCATTCCTATAAATAAGC
GAAACAAATCGATCAATTGACCACGGTACAGAACTCAGCACGTTTGGCCATTCACAGCAGCAAGT
TACTTCCGACAATATTGAACTGCGAACAGTCTAAGCCGTTAGTGT
Found at i:467696 original size:33 final size:33
Alignment explanation
Indices: 467633--467750 Score: 137
Period size: 33 Copynumber: 3.6 Consensus size: 33
467623 TACAGTGTTT
467633 TTACAGTGCTGTTATGGTGCTGTTACGGTGCTG
1 TTACAGTGCTGTTATGGTGCTGTTACGGTGCTG
* * *
467666 TTACAATGCTGTTATGGTGCTGTCATGGTGCTG
1 TTACAGTGCTGTTATGGTGCTGTTACGGTGCTG
* ** * *
467699 TCATGGTGCTGTCATGGTGCTGTTACGGTGCTC
1 TTACAGTGCTGTTATGGTGCTGTTACGGTGCTG
* * *
467732 TTACGGTGCTCTTACGGTG
1 TTACAGTGCTGTTATGGTG
467751 TTTTGATACT
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 69 1.00
ACGTcount: A:0.12, C:0.18, G:0.32, T:0.38
Consensus pattern (33 bp):
TTACAGTGCTGTTATGGTGCTGTTACGGTGCTG
Left flanking sequence: Indices 467133 -- 467632
ATTGGCCAATAGGTGGTGTTGTTTTGTTTACCTCTTCGGAGTGGTTGGCCATCATCTTTGTTGTC
CTTGCCCGTCCACCGAGTGTTCTACATTCAATGCTCATTTTTCGGACAAAATTGCCCACCAATGA
CTACTGATCCCCTGAAGTTTTTGAGCGACATCATCGGGTCCCTGGTGGTGGTCAAGTTGCACAAT
GGCATCACCTACTCCGGGCTGCTCCAGCTGATTGACGGCTACATGAACATTGTGTTGGAGGAGGG
CAACGAAATGCTTGGCGACGAGGTGACCAAGAAGTGGGGCGACGTGTTTATTCGCGGGAACAACG
GTAAGTGAGATACTAAGAGTGCCATGGGTGGGTGAAATGGTGATAGGGAACGTTCCAGGCTGGTT
TATTGTTCTACTGGTGGCGCAGTGGTGGCAGTGTGATGGTGGCAGTGTGATGGTGGCAGTGCGGT
ATTATAGTGGCAATGCGCTGGTGTTACAGTGTTGTTACAGTGTTT
Right flanking sequence: Indices 467751 -- 468250
TTTTGATACTCGTATTGGCACATTGCTACTAAAGAGTTTCGTCAGTGCTACTGCAGTGCTCCCAC
GGCGCTTTCATAGTGCAAGCACGCCAACAGAATTGTGCTACTGTTCAAGCCCGTGCTACTGTTCA
AGCCCATCCCCAGTTATTGAATTTTCTCAGCCTAGAGTCAAACCCTGAAACATACGAGAGGAGTT
CTCAACCATCATTCAAATACTAACTTCTAGTGTTGTACATTAGCGAAGCTTAACCAACGAAACGA
GAAACGATGTAACATATCTTAATACTACAAAGACGAAAATTGCGAAAGTCCGAACAAGGACGAAT
AGAGGCCTAGATGACTAGGCGTCGCGCTGATGGAACCAGCATTCCTATAAATAAGCGAAACAAAT
CGATCAATTGACCACGGTACAGAACTCAGCACGTTTGGCCATTCACAGCAGCAAGTTACTTCCGA
CAATATTGAACTGCGAACAGTCTAAGCCGTTAGTGTTGACAAGAA
Found at i:467742 original size:11 final size:11
Alignment explanation
Indices: 467714--467750 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
467704 GTGCTGTCAT
*
467714 GGTGCTGTTAC
1 GGTGCTCTTAC
467725 GGTGCTCTTAC
1 GGTGCTCTTAC
467736 GGTGCTCTTAC
1 GGTGCTCTTAC
467747 GGTG
1 GGTG
467751 TTTTGATACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.08, C:0.22, G:0.35, T:0.35
Consensus pattern (11 bp):
GGTGCTCTTAC
Left flanking sequence: Indices 467214 -- 467713
GTGTTCTACATTCAATGCTCATTTTTCGGACAAAATTGCCCACCAATGACTACTGATCCCCTGAA
GTTTTTGAGCGACATCATCGGGTCCCTGGTGGTGGTCAAGTTGCACAATGGCATCACCTACTCCG
GGCTGCTCCAGCTGATTGACGGCTACATGAACATTGTGTTGGAGGAGGGCAACGAAATGCTTGGC
GACGAGGTGACCAAGAAGTGGGGCGACGTGTTTATTCGCGGGAACAACGGTAAGTGAGATACTAA
GAGTGCCATGGGTGGGTGAAATGGTGATAGGGAACGTTCCAGGCTGGTTTATTGTTCTACTGGTG
GCGCAGTGGTGGCAGTGTGATGGTGGCAGTGTGATGGTGGCAGTGCGGTATTATAGTGGCAATGC
GCTGGTGTTACAGTGTTGTTACAGTGTTTTTACAGTGCTGTTATGGTGCTGTTACGGTGCTGTTA
CAATGCTGTTATGGTGCTGTCATGGTGCTGTCATGGTGCTGTCAT
Right flanking sequence: Indices 467751 -- 468250
TTTTGATACTCGTATTGGCACATTGCTACTAAAGAGTTTCGTCAGTGCTACTGCAGTGCTCCCAC
GGCGCTTTCATAGTGCAAGCACGCCAACAGAATTGTGCTACTGTTCAAGCCCGTGCTACTGTTCA
AGCCCATCCCCAGTTATTGAATTTTCTCAGCCTAGAGTCAAACCCTGAAACATACGAGAGGAGTT
CTCAACCATCATTCAAATACTAACTTCTAGTGTTGTACATTAGCGAAGCTTAACCAACGAAACGA
GAAACGATGTAACATATCTTAATACTACAAAGACGAAAATTGCGAAAGTCCGAACAAGGACGAAT
AGAGGCCTAGATGACTAGGCGTCGCGCTGATGGAACCAGCATTCCTATAAATAAGCGAAACAAAT
CGATCAATTGACCACGGTACAGAACTCAGCACGTTTGGCCATTCACAGCAGCAAGTTACTTCCGA
CAATATTGAACTGCGAACAGTCTAAGCCGTTAGTGTTGACAAGAA
Found at i:467873 original size:18 final size:18
Alignment explanation
Indices: 467850--467885 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
467840 CAACAGAATT
467850 GTGCTACTGTTCAAGCCC
1 GTGCTACTGTTCAAGCCC
467868 GTGCTACTGTTCAAGCCC
1 GTGCTACTGTTCAAGCCC
467886 ATCCCCAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.33, G:0.22, T:0.28
Consensus pattern (18 bp):
GTGCTACTGTTCAAGCCC
Left flanking sequence: Indices 467350 -- 467849
TCCAGCTGATTGACGGCTACATGAACATTGTGTTGGAGGAGGGCAACGAAATGCTTGGCGACGAG
GTGACCAAGAAGTGGGGCGACGTGTTTATTCGCGGGAACAACGGTAAGTGAGATACTAAGAGTGC
CATGGGTGGGTGAAATGGTGATAGGGAACGTTCCAGGCTGGTTTATTGTTCTACTGGTGGCGCAG
TGGTGGCAGTGTGATGGTGGCAGTGTGATGGTGGCAGTGCGGTATTATAGTGGCAATGCGCTGGT
GTTACAGTGTTGTTACAGTGTTTTTACAGTGCTGTTATGGTGCTGTTACGGTGCTGTTACAATGC
TGTTATGGTGCTGTCATGGTGCTGTCATGGTGCTGTCATGGTGCTGTTACGGTGCTCTTACGGTG
CTCTTACGGTGTTTTGATACTCGTATTGGCACATTGCTACTAAAGAGTTTCGTCAGTGCTACTGC
AGTGCTCCCACGGCGCTTTCATAGTGCAAGCACGCCAACAGAATT
Right flanking sequence: Indices 467886 -- 468385
ATCCCCAGTTATTGAATTTTCTCAGCCTAGAGTCAAACCCTGAAACATACGAGAGGAGTTCTCAA
CCATCATTCAAATACTAACTTCTAGTGTTGTACATTAGCGAAGCTTAACCAACGAAACGAGAAAC
GATGTAACATATCTTAATACTACAAAGACGAAAATTGCGAAAGTCCGAACAAGGACGAATAGAGG
CCTAGATGACTAGGCGTCGCGCTGATGGAACCAGCATTCCTATAAATAAGCGAAACAAATCGATC
AATTGACCACGGTACAGAACTCAGCACGTTTGGCCATTCACAGCAGCAAGTTACTTCCGACAATA
TTGAACTGCGAACAGTCTAAGCCGTTAGTGTTGACAAGAACAACCATACGTTCCCCATTAGAATC
TTGCTTGATGAGGCCCGTGTTGGGGTGGACCCCCTTTTGCACGTTGTCAGCCCTTTGCTGGCAAT
TGATAGCATCCAACGCAGCGTCTCGCGGCCTCTCACCCGAACCAG
Found at i:473098 original size:13 final size:13
Alignment explanation
Indices: 473080--473105 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
473070 TTTATCACTG
473080 GACATCATTGCTC
1 GACATCATTGCTC
473093 GACATCATTGCTC
1 GACATCATTGCTC
473106 TGATTGTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (13 bp):
GACATCATTGCTC
Left flanking sequence: Indices 472580 -- 473079
GTGTACGCCTAGCCCCTTGGTTGCACATTTTTTGCTGGTCAGATATCCCAAATACATCAAAAATA
GCTGCGACAGACCGGCAATGTATCACTTGTTCGCGTAGCTGCGTCCCGTCATTATTCCCCCCTCT
TTTCAATGATCGCTGTATTCGCCCAAACCGTCGTAAGCGTCTCTTTAGCTCTGCTTCCACGAATA
AATCTTGCTAATGACTCGGCAATACTACGAGTCAAGAACGGGAAGCGATTTTGTGTACTCTCGTT
TGTCTCTGTCCAGCTTTGCTTCCAAAAATAAATCTCGCCAGTGACTCGGCATTCTACGAGTCAAC
AACGTGTAGCTGGCAATTTTGTGTACTCTCGTTAGTCTCGGTTCACATCCCGTTTACGAAGGCAC
CAACACAAATGCGTTTGAACCATTTTAAGGTATGTGCCTCACCATCTCTTCCAAAGTCAAACGGA
TCAACATAGCCAATCTGTGACTAAATGTCAGTTCATTTATCACTG
Right flanking sequence: Indices 473106 -- 473605
TGATTGTTCTCTGTGTACTTTGTACCACTGATCGGCTTTGTGGCATTTCACGTTGTGAGCCCAGC
ACCGACTAACTCCGGTTACTGAATATATAAAATGGTTGCAAATACCGATTCATCTGTAGCAATGA
AATTTTCAATCCTCTTGACGTTGGCTACTGCCGTGGTTGCGCTCCCTTCGAAGCGATCGCCGAAA
GTGTTGTCTTTAGACATCCTGTACGAGGACACGCCCCAGCTCACCTGGTTTTCTGCACTGGTGGA
TACCGATGTGGACCTTACGAATTCGGGCACCTATTACGCTCATCTTAAGTTTGGGTCACAGAAGG
ATGCCGTAAAGACAGTTTTAGACACTGGGTCTGCTGACTTGTGGATCGACCAAAAGCTTCACAAC
GTGACTGCTTCAATGGACGGTAGAGTCCTCTCCGACGTGCTTAACGCAGGTTACGACACGGGCGG
GGGTGTGAAGGGTACATACGCTCAAGACACCGTTTATTTGGGTGA
Found at i:474642 original size:5 final size:5
Alignment explanation
Indices: 474634--474718 Score: 50
Period size: 5 Copynumber: 17.6 Consensus size: 5
474624 CTCCACTTCA
** * * * * *
474634 CTCCC CTCCC CTCCC CTCAA CT-CC CTTCA CTCCA CT-CT CTCCC CTCCA
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC
** * *
474682 CTCAA CT-CC CTTCA CTCCC CTCCC CTCCC CTCCC CTC
1 CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTCCC CTC
474719 TACACCTCCC
Statistics
Matches: 62, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
4 7 0.11
5 55 0.89
ACGTcount: A:0.09, C:0.66, G:0.00, T:0.25
Consensus pattern (5 bp):
CTCCC
Left flanking sequence: Indices 474134 -- 474633
TCAGTTTCTCTGGTTCAACGGAAGCAAGTGCTTCGTGGGGGCCAAGAAGAAGAACCCGAAAAATC
CCAACAATGTTTTGGGGGCCACTTTCCTCCAGAATGTGTACGCGGTGTACGACTGGGAGGAGAAT
ACCATTTCGCTCGCCAAGGCGAAGTACACCGACGCCACCGACATCAGGGAGATCCCGGCATTGTA
AAACGGCGACATGGAGATGGTGTAAACTGTGTTTCCTTATTTCTCACAAATCTTGGCCAGTCTTC
CATTGTATCTAATTAAGCTACAAATGAAATTGTTCGTAAAAAGTGGTTGCAAAATGTGGCCGCAA
AAGGTACACGGTGCATATTCACGACTTGGAGATCAGATCAAGGAAGCAACACTACCCGGACCCAA
GAATCACTTGACCTGATCAGAATCAAAGCCCACTTTTTACGAGTAGATACGATGTCATCTTTTGT
AGATACGAATGCTTTCCCGAATAGGACTCAACTCCCTCCACTTCA
Right flanking sequence: Indices 474719 -- 475218
TACACCTCCCTTCTCCTCCCTTTATTCTCCTAACTATACACTACCTCCCCTCCACTCAAATCAAA
CGAAATGCTCGGGCCATGGCCCACCCCCTTCTTCTCCATATTAGTAATAAACCAGTCGTTGACAA
ACGACACCAACTGGAGCACAAACATGTTGCGCTCGTTGATCCGGTTGTAGTCGTGCTGGGCAACA
ATCCCCTCCTCCTTGGCCGCCTGGCCCTCCTCCGCCACCTCGGTGGGCGTCTGGTGCAACCCGTG
GCCAAACTCCGCGTACACCAAGTCCTCGATCCCGTGCACTAGGTCGTAGCGAATGTCCTCCCACT
CAATGCCAAGGAACCGGTTGCCGATCAGCCGCTTGTACTTGAAGTAGCGGTAGATCCACCCGCCG
AGAATGGTGGTCTTTTTGTTGAACGACGCCGTCAGCGCCTTGGAGGAGGTGCGCACCTCCTTGAT
AAAGTTTTTCGTGCTCTGCACCAACTCGTGGTGCTGGCGGTTGGT
Found at i:474642 original size:19 final size:18
Alignment explanation
Indices: 474620--474680 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 18
474610 TAGGACTCAA
474620 CTCCCTCCACTTCACTCCC
1 CTCCCTCCAC-TCACTCCC
*
474639 CTCCCCTCCCCTCAACTCCC
1 CT-CCCTCCACTC-ACTCCC
* * *
474659 TTCACTCCACTCTCTCCC
1 CTCCCTCCACTCACTCCC
474677 CTCC
1 CTCC
474681 ACTCAACTCC
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
18 7 0.21
19 12 0.36
20 14 0.42
ACGTcount: A:0.10, C:0.64, G:0.00, T:0.26
Consensus pattern (18 bp):
CTCCCTCCACTCACTCCC
Left flanking sequence: Indices 474120 -- 474619
AAGATCCCCATCACTCAGTTTCTCTGGTTCAACGGAAGCAAGTGCTTCGTGGGGGCCAAGAAGAA
GAACCCGAAAAATCCCAACAATGTTTTGGGGGCCACTTTCCTCCAGAATGTGTACGCGGTGTACG
ACTGGGAGGAGAATACCATTTCGCTCGCCAAGGCGAAGTACACCGACGCCACCGACATCAGGGAG
ATCCCGGCATTGTAAAACGGCGACATGGAGATGGTGTAAACTGTGTTTCCTTATTTCTCACAAAT
CTTGGCCAGTCTTCCATTGTATCTAATTAAGCTACAAATGAAATTGTTCGTAAAAAGTGGTTGCA
AAATGTGGCCGCAAAAGGTACACGGTGCATATTCACGACTTGGAGATCAGATCAAGGAAGCAACA
CTACCCGGACCCAAGAATCACTTGACCTGATCAGAATCAAAGCCCACTTTTTACGAGTAGATACG
ATGTCATCTTTTGTAGATACGAATGCTTTCCCGAATAGGACTCAA
Right flanking sequence: Indices 474681 -- 475180
ACTCAACTCCCTTCACTCCCCTCCCCTCCCCTCCCCTCTACACCTCCCTTCTCCTCCCTTTATTC
TCCTAACTATACACTACCTCCCCTCCACTCAAATCAAACGAAATGCTCGGGCCATGGCCCACCCC
CTTCTTCTCCATATTAGTAATAAACCAGTCGTTGACAAACGACACCAACTGGAGCACAAACATGT
TGCGCTCGTTGATCCGGTTGTAGTCGTGCTGGGCAACAATCCCCTCCTCCTTGGCCGCCTGGCCC
TCCTCCGCCACCTCGGTGGGCGTCTGGTGCAACCCGTGGCCAAACTCCGCGTACACCAAGTCCTC
GATCCCGTGCACTAGGTCGTAGCGAATGTCCTCCCACTCAATGCCAAGGAACCGGTTGCCGATCA
GCCGCTTGTACTTGAAGTAGCGGTAGATCCACCCGCCGAGAATGGTGGTCTTTTTGTTGAACGAC
GCCGTCAGCGCCTTGGAGGAGGTGCGCACCTCCTTGATAAAGTTT
Found at i:474683 original size:19 final size:19
Alignment explanation
Indices: 474620--474689 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
474610 TAGGACTCAA
474620 CTCC-CTCCACTTCACTCCC
1 CTCCACTCCAC-TCACTCCC
* *
474639 CTCCCCTCCCCTCAACT-CC
1 CTCCACTCCACTC-ACTCCC
* *
474658 CTTCACTCCACTCTCTCCC
1 CTCCACTCCACTCACTCCC
*
474677 CTCCACTCAACTC
1 CTCCACTCCACTC
474690 CCTTCACTCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
18 2 0.05
19 31 0.76
20 8 0.20
ACGTcount: A:0.13, C:0.61, G:0.00, T:0.26
Consensus pattern (19 bp):
CTCCACTCCACTCACTCCC
Left flanking sequence: Indices 474120 -- 474619
AAGATCCCCATCACTCAGTTTCTCTGGTTCAACGGAAGCAAGTGCTTCGTGGGGGCCAAGAAGAA
GAACCCGAAAAATCCCAACAATGTTTTGGGGGCCACTTTCCTCCAGAATGTGTACGCGGTGTACG
ACTGGGAGGAGAATACCATTTCGCTCGCCAAGGCGAAGTACACCGACGCCACCGACATCAGGGAG
ATCCCGGCATTGTAAAACGGCGACATGGAGATGGTGTAAACTGTGTTTCCTTATTTCTCACAAAT
CTTGGCCAGTCTTCCATTGTATCTAATTAAGCTACAAATGAAATTGTTCGTAAAAAGTGGTTGCA
AAATGTGGCCGCAAAAGGTACACGGTGCATATTCACGACTTGGAGATCAGATCAAGGAAGCAACA
CTACCCGGACCCAAGAATCACTTGACCTGATCAGAATCAAAGCCCACTTTTTACGAGTAGATACG
ATGTCATCTTTTGTAGATACGAATGCTTTCCCGAATAGGACTCAA
Right flanking sequence: Indices 474690 -- 475189
CCTTCACTCCCCTCCCCTCCCCTCCCCTCTACACCTCCCTTCTCCTCCCTTTATTCTCCTAACTA
TACACTACCTCCCCTCCACTCAAATCAAACGAAATGCTCGGGCCATGGCCCACCCCCTTCTTCTC
CATATTAGTAATAAACCAGTCGTTGACAAACGACACCAACTGGAGCACAAACATGTTGCGCTCGT
TGATCCGGTTGTAGTCGTGCTGGGCAACAATCCCCTCCTCCTTGGCCGCCTGGCCCTCCTCCGCC
ACCTCGGTGGGCGTCTGGTGCAACCCGTGGCCAAACTCCGCGTACACCAAGTCCTCGATCCCGTG
CACTAGGTCGTAGCGAATGTCCTCCCACTCAATGCCAAGGAACCGGTTGCCGATCAGCCGCTTGT
ACTTGAAGTAGCGGTAGATCCACCCGCCGAGAATGGTGGTCTTTTTGTTGAACGACGCCGTCAGC
GCCTTGGAGGAGGTGCGCACCTCCTTGATAAAGTTTTTCGTGCTC
Found at i:474699 original size:19 final size:19
Alignment explanation
Indices: 474644--474699 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
474634 CTCCCCTCCC
*
474644 CTCCCCTCAACTCCCTTCA
1 CTCCACTCAACTCCCTTCA
*
474663 CTCCACTC-TCT-CC--C-
1 CTCCACTCAACTCCCTTCA
474677 CTCCACTCAACTCCCTTCA
1 CTCCACTCAACTCCCTTCA
474696 CTCC
1 CTCC
474700 CCTCCCCTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 10
0.69 0.07 0.24
Matches are distributed among these distances:
14 8 0.28
15 3 0.10
16 2 0.07
17 2 0.07
18 3 0.10
19 11 0.38
ACGTcount: A:0.14, C:0.59, G:0.00, T:0.27
Consensus pattern (19 bp):
CTCCACTCAACTCCCTTCA
Left flanking sequence: Indices 474144 -- 474643
TGGTTCAACGGAAGCAAGTGCTTCGTGGGGGCCAAGAAGAAGAACCCGAAAAATCCCAACAATGT
TTTGGGGGCCACTTTCCTCCAGAATGTGTACGCGGTGTACGACTGGGAGGAGAATACCATTTCGC
TCGCCAAGGCGAAGTACACCGACGCCACCGACATCAGGGAGATCCCGGCATTGTAAAACGGCGAC
ATGGAGATGGTGTAAACTGTGTTTCCTTATTTCTCACAAATCTTGGCCAGTCTTCCATTGTATCT
AATTAAGCTACAAATGAAATTGTTCGTAAAAAGTGGTTGCAAAATGTGGCCGCAAAAGGTACACG
GTGCATATTCACGACTTGGAGATCAGATCAAGGAAGCAACACTACCCGGACCCAAGAATCACTTG
ACCTGATCAGAATCAAAGCCCACTTTTTACGAGTAGATACGATGTCATCTTTTGTAGATACGAAT
GCTTTCCCGAATAGGACTCAACTCCCTCCACTTCACTCCCCTCCC
Right flanking sequence: Indices 474700 -- 475199
CCTCCCCTCCCCTCCCCTCTACACCTCCCTTCTCCTCCCTTTATTCTCCTAACTATACACTACCT
CCCCTCCACTCAAATCAAACGAAATGCTCGGGCCATGGCCCACCCCCTTCTTCTCCATATTAGTA
ATAAACCAGTCGTTGACAAACGACACCAACTGGAGCACAAACATGTTGCGCTCGTTGATCCGGTT
GTAGTCGTGCTGGGCAACAATCCCCTCCTCCTTGGCCGCCTGGCCCTCCTCCGCCACCTCGGTGG
GCGTCTGGTGCAACCCGTGGCCAAACTCCGCGTACACCAAGTCCTCGATCCCGTGCACTAGGTCG
TAGCGAATGTCCTCCCACTCAATGCCAAGGAACCGGTTGCCGATCAGCCGCTTGTACTTGAAGTA
GCGGTAGATCCACCCGCCGAGAATGGTGGTCTTTTTGTTGAACGACGCCGTCAGCGCCTTGGAGG
AGGTGCGCACCTCCTTGATAAAGTTTTTCGTGCTCTGCACCAACT
Found at i:474709 original size:19 final size:19
Alignment explanation
Indices: 474622--474710 Score: 56
Period size: 19 Copynumber: 4.4 Consensus size: 19
474612 GGACTCAACT
474622 CCCTCCACTTCACTCCCCTC
1 CCCTCC-CTTCACTCCCCTC
* *
474642 CCCTCCCCTCAACT-CCCTT
1 CCCTCCCTTC-ACTCCCCTC
* *
474661 CACTCCAC-TCTCTCCCCTCC
1 CCCTCC-CTTCACTCCCCT-C
474681 ACTCAACTCCCTTCACTCCCCTC
1 -C-C--CTCCCTTCACTCCCCTC
474704 CCCTCCC
1 CCCTCCC
474711 CTCCCCTCTA
Statistics
Matches: 53, Mismatches: 7, Indels: 19
0.67 0.09 0.24
Matches are distributed among these distances:
18 2 0.04
19 23 0.43
20 10 0.19
21 2 0.04
22 1 0.02
23 2 0.04
24 13 0.25
ACGTcount: A:0.11, C:0.64, G:0.00, T:0.25
Consensus pattern (19 bp):
CCCTCCCTTCACTCCCCTC
Left flanking sequence: Indices 474122 -- 474621
GATCCCCATCACTCAGTTTCTCTGGTTCAACGGAAGCAAGTGCTTCGTGGGGGCCAAGAAGAAGA
ACCCGAAAAATCCCAACAATGTTTTGGGGGCCACTTTCCTCCAGAATGTGTACGCGGTGTACGAC
TGGGAGGAGAATACCATTTCGCTCGCCAAGGCGAAGTACACCGACGCCACCGACATCAGGGAGAT
CCCGGCATTGTAAAACGGCGACATGGAGATGGTGTAAACTGTGTTTCCTTATTTCTCACAAATCT
TGGCCAGTCTTCCATTGTATCTAATTAAGCTACAAATGAAATTGTTCGTAAAAAGTGGTTGCAAA
ATGTGGCCGCAAAAGGTACACGGTGCATATTCACGACTTGGAGATCAGATCAAGGAAGCAACACT
ACCCGGACCCAAGAATCACTTGACCTGATCAGAATCAAAGCCCACTTTTTACGAGTAGATACGAT
GTCATCTTTTGTAGATACGAATGCTTTCCCGAATAGGACTCAACT
Right flanking sequence: Indices 474711 -- 475210
CTCCCCTCTACACCTCCCTTCTCCTCCCTTTATTCTCCTAACTATACACTACCTCCCCTCCACTC
AAATCAAACGAAATGCTCGGGCCATGGCCCACCCCCTTCTTCTCCATATTAGTAATAAACCAGTC
GTTGACAAACGACACCAACTGGAGCACAAACATGTTGCGCTCGTTGATCCGGTTGTAGTCGTGCT
GGGCAACAATCCCCTCCTCCTTGGCCGCCTGGCCCTCCTCCGCCACCTCGGTGGGCGTCTGGTGC
AACCCGTGGCCAAACTCCGCGTACACCAAGTCCTCGATCCCGTGCACTAGGTCGTAGCGAATGTC
CTCCCACTCAATGCCAAGGAACCGGTTGCCGATCAGCCGCTTGTACTTGAAGTAGCGGTAGATCC
ACCCGCCGAGAATGGTGGTCTTTTTGTTGAACGACGCCGTCAGCGCCTTGGAGGAGGTGCGCACC
TCCTTGATAAAGTTTTTCGTGCTCTGCACCAACTCGTGGTGCTGG
Found at i:475649 original size:12 final size:12
Alignment explanation
Indices: 475632--475660 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
475622 GTGTCGTCGT
475632 GCACCGCCCCGG
1 GCACCGCCCCGG
475644 GCACCGCCCCGG
1 GCACCGCCCCGG
475656 GCACC
1 GCACC
475661 CCCGCCACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.59, G:0.31, T:0.00
Consensus pattern (12 bp):
GCACCGCCCCGG
Left flanking sequence: Indices 475132 -- 475631
CGACGCCGTCAGCGCCTTGGAGGAGGTGCGCACCTCCTTGATAAAGTTTTTCGTGCTCTGCACCA
ACTCGTGGTGCTGGCGGTTGGTGAGGAGGTGGTCCGGGTGGATGTGCTCGAGCTGCACCGCGGTG
GCAAGCGCGTCGGCGCCCACCGGGGGCACCCCACGGGCACCCTCGCCGTCGCTGCCCCGCGCCTG
GTGCTCCAAAAACAACGCCAAGTCGCGCTGGGCCTCGGCGTAGGGGGCGACGCTGGGGCTGAACG
CCATCGGGTGCGCCGGGGCCGCTGCCGCGAGCGCCGCCGCGTCAAACACGTGGGTCTCCTCGGGG
GCCTCCTTGACCGCCTTCTTTTTGACCGCCTTTTTCTTGGGCTCGACCTTGGCCGCCTCCACCTG
GGGGTCCCCGGGCGACGGCACCGGCGAGCTCAACCCGGGGTCCATCTCAAAGTCGGGGTCCTCGC
CCGCCACGGGGGCGTCGTCGTCGTCGTCGGCCTCGGTGTCGTCGT
Right flanking sequence: Indices 475661 -- 476160
CCCGCCACCGGGGGCACCCCGCCGGCCGCCGCCCCGGGGGGCACCGCCACCGCCGCCACCGCGGC
CCCGGGGGAGCTGCCGTTGGTGAACAACATCGACTCGGTGCCGTACACCGGGCCGCCCCCGTTGG
CCGCCTGGTACTTGGTGCGCTTGCGGTGGGGCTCCTCCTCGAGCACCATCGGTGCCAGCGGCATG
AGCGCCAGGTGGTGTGCCTGGGTGGCCGCCAGCGCCGCCGCCGCCGCCTGCGCCGCCTGGGCCTC
CGCCAGGGGCTCGTCGCCCCCGGGCCCCGGGGGCCGGGGCAACGGGCGCGCCGCGTCCTCGCCGA
GGTGGTGCAACCGCTGGCGGAACATCATCTGCAGGTACTCGACCTCGACGGGGGTGTCGACGTCG
TGGCGGTGCTGGTCCCCCCCCGGCACCGCCACCCGGGGCGGGATGGTAGCGCCGCCGAACGGGTT
CTGCGCCATCGAGGCAGCACTAAAGTCGGTTTCGAGGTAGGTGTA
Found at i:475692 original size:27 final size:24
Alignment explanation
Indices: 475657--475721 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 24
475647 CCGCCCCGGG
*
475657 CACCCCCGCCACCGGGGGCACCCCGC
1 CACCGCCGCCACCGGGGGCA--CCGC
*
475683 CGGCCGCCGCC-CCGGGGGGCACCGC
1 C-ACCGCCGCCACC-GGGGGCACCGC
475708 CACCGCCGCCACCG
1 CACCGCCGCCACCG
475722 CGGCCCCGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
24 9 0.27
25 7 0.21
26 3 0.09
27 14 0.42
ACGTcount: A:0.09, C:0.58, G:0.32, T:0.00
Consensus pattern (24 bp):
CACCGCCGCCACCGGGGGCACCGC
Left flanking sequence: Indices 475157 -- 475656
GTGCGCACCTCCTTGATAAAGTTTTTCGTGCTCTGCACCAACTCGTGGTGCTGGCGGTTGGTGAG
GAGGTGGTCCGGGTGGATGTGCTCGAGCTGCACCGCGGTGGCAAGCGCGTCGGCGCCCACCGGGG
GCACCCCACGGGCACCCTCGCCGTCGCTGCCCCGCGCCTGGTGCTCCAAAAACAACGCCAAGTCG
CGCTGGGCCTCGGCGTAGGGGGCGACGCTGGGGCTGAACGCCATCGGGTGCGCCGGGGCCGCTGC
CGCGAGCGCCGCCGCGTCAAACACGTGGGTCTCCTCGGGGGCCTCCTTGACCGCCTTCTTTTTGA
CCGCCTTTTTCTTGGGCTCGACCTTGGCCGCCTCCACCTGGGGGTCCCCGGGCGACGGCACCGGC
GAGCTCAACCCGGGGTCCATCTCAAAGTCGGGGTCCTCGCCCGCCACGGGGGCGTCGTCGTCGTC
GTCGGCCTCGGTGTCGTCGTGCACCGCCCCGGGCACCGCCCCGGG
Right flanking sequence: Indices 475722 -- 476221
CGGCCCCGGGGGAGCTGCCGTTGGTGAACAACATCGACTCGGTGCCGTACACCGGGCCGCCCCCG
TTGGCCGCCTGGTACTTGGTGCGCTTGCGGTGGGGCTCCTCCTCGAGCACCATCGGTGCCAGCGG
CATGAGCGCCAGGTGGTGTGCCTGGGTGGCCGCCAGCGCCGCCGCCGCCGCCTGCGCCGCCTGGG
CCTCCGCCAGGGGCTCGTCGCCCCCGGGCCCCGGGGGCCGGGGCAACGGGCGCGCCGCGTCCTCG
CCGAGGTGGTGCAACCGCTGGCGGAACATCATCTGCAGGTACTCGACCTCGACGGGGGTGTCGAC
GTCGTGGCGGTGCTGGTCCCCCCCCGGCACCGCCACCCGGGGCGGGATGGTAGCGCCGCCGAACG
GGTTCTGCGCCATCGAGGCAGCACTAAAGTCGGTTTCGAGGTAGGTGTACATCAACCAGAGGAAG
CGGCGGGCGCGGTTGGCCGGGTCCACGGAGCTGTTGAGGAAGAAG
Found at i:476395 original size:15 final size:15
Alignment explanation
Indices: 476375--476406 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
476365 CGCGGCGGAG
476375 GCGGTGGAGGAGGGC
1 GCGGTGGAGGAGGGC
*
476390 GCGGTGGGGGAGGGC
1 GCGGTGGAGGAGGGC
476405 GC
1 GC
476407 ACCGCCAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.16, G:0.69, T:0.06
Consensus pattern (15 bp):
GCGGTGGAGGAGGGC
Left flanking sequence: Indices 475875 -- 476374
GGGTGGCCGCCAGCGCCGCCGCCGCCGCCTGCGCCGCCTGGGCCTCCGCCAGGGGCTCGTCGCCC
CCGGGCCCCGGGGGCCGGGGCAACGGGCGCGCCGCGTCCTCGCCGAGGTGGTGCAACCGCTGGCG
GAACATCATCTGCAGGTACTCGACCTCGACGGGGGTGTCGACGTCGTGGCGGTGCTGGTCCCCCC
CCGGCACCGCCACCCGGGGCGGGATGGTAGCGCCGCCGAACGGGTTCTGCGCCATCGAGGCAGCA
CTAAAGTCGGTTTCGAGGTAGGTGTACATCAACCAGAGGAAGCGGCGGGCGCGGTTGGCCGGGTC
CACGGAGCTGTTGAGGAAGAAGTCGAGGAAGTCGGACGTGTCGTCGTCGTAGAAGGGGATGGGCG
GGGCCTGCGCCAGCAAGAGGAAGATGAGGGAGAACACGTTGGTGTTCGGGGCGCGCGCCGGGGCC
AGCGGGTGCTCGATGAGCTCGGCGAGGGTGCGGGGCGCGGCGGAG
Right flanking sequence: Indices 476407 -- 476906
ACCGCCAGTGGGGGAGGCCGCAGCGGTGGGTGACGCAGCACCCGCACCGGTAGCAGGTGACGCAG
CACCAGCACCTCCCGCAGAAGCAGCACCAGTAGGTGAACTAGCACCAGCACCCGATGGTGAACCA
GCACTGGCACCACCCGTGGGTGAACCACCATCACCCACCACACCCCTCCCACCAAGATCGCTCTC
ACACACCGCCTTCAAGATCAGCTTGAGCCGCGGGGTGTCCTGCAACGGCTTGGTGCGCCCCTCAG
CGTCCGCCTGGAGACTCGGGATCAGGTGGTAGGTGCGCAACGTCAGCCGCATCTCGGGGACAAAG
TTGATGGTGGTGTTCATGCGCCCGGCGTTGACCAAGAGGGTCACCTTGGCCACCAGCTCGCCCAT
GTCGCGGTCGCGGAGAAGCCGCTCCTTGAGCACCTTCAGACACTTGCTCAGCTCGGCGATGGTGC
GGATGTAGAGCTCGGCAAACAGCACCCGGGGCGCGTTGTTGGCCA
Found at i:476520 original size:24 final size:24
Alignment explanation
Indices: 476493--476540 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
476483 CCCGCAGAAG
*
476493 CAGCACCAG-TAGGTGAACTAGCAC
1 CAGCACCAGAT-GGTGAACCAGCAC
*
476517 CAGCACCCGATGGTGAACCAGCAC
1 CAGCACCAGATGGTGAACCAGCAC
476541 TGGCACCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.10
Consensus pattern (24 bp):
CAGCACCAGATGGTGAACCAGCAC
Left flanking sequence: Indices 475993 -- 476492
CAACCGCTGGCGGAACATCATCTGCAGGTACTCGACCTCGACGGGGGTGTCGACGTCGTGGCGGT
GCTGGTCCCCCCCCGGCACCGCCACCCGGGGCGGGATGGTAGCGCCGCCGAACGGGTTCTGCGCC
ATCGAGGCAGCACTAAAGTCGGTTTCGAGGTAGGTGTACATCAACCAGAGGAAGCGGCGGGCGCG
GTTGGCCGGGTCCACGGAGCTGTTGAGGAAGAAGTCGAGGAAGTCGGACGTGTCGTCGTCGTAGA
AGGGGATGGGCGGGGCCTGCGCCAGCAAGAGGAAGATGAGGGAGAACACGTTGGTGTTCGGGGCG
CGCGCCGGGGCCAGCGGGTGCTCGATGAGCTCGGCGAGGGTGCGGGGCGCGGCGGAGGCGGTGGA
GGAGGGCGCGGTGGGGGAGGGCGCACCGCCAGTGGGGGAGGCCGCAGCGGTGGGTGACGCAGCAC
CCGCACCGGTAGCAGGTGACGCAGCACCAGCACCTCCCGCAGAAG
Right flanking sequence: Indices 476541 -- 477040
TGGCACCACCCGTGGGTGAACCACCATCACCCACCACACCCCTCCCACCAAGATCGCTCTCACAC
ACCGCCTTCAAGATCAGCTTGAGCCGCGGGGTGTCCTGCAACGGCTTGGTGCGCCCCTCAGCGTC
CGCCTGGAGACTCGGGATCAGGTGGTAGGTGCGCAACGTCAGCCGCATCTCGGGGACAAAGTTGA
TGGTGGTGTTCATGCGCCCGGCGTTGACCAAGAGGGTCACCTTGGCCACCAGCTCGCCCATGTCG
CGGTCGCGGAGAAGCCGCTCCTTGAGCACCTTCAGACACTTGCTCAGCTCGGCGATGGTGCGGAT
GTAGAGCTCGGCAAACAGCACCCGGGGCGCGTTGTTGGCCATGGGGATGTCGGTCTGGGCAAAGT
AGTTGGAGAAGCACGCGGTGGGGTCGGCGAAGACGGCGGCCAAGAAGTCGTACTGGATGTCCTTG
CGCCAGAACGGCTCGCCGTCGGCCTTCTTGAGGTGGCGCAGCTTG
Found at i:477138 original size:15 final size:15
Alignment explanation
Indices: 477128--477164 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
477118 GGTGGCGGTG
477128 TGGGTGGTGGCAGCA
1 TGGGTGGTGGCAGCA
477143 TGGGTGGTGGCAGCA
1 TGGGTGGTGGCAGCA
477158 TGGGTGG
1 TGGGTGG
477165 GTGTTTGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.11, C:0.11, G:0.57, T:0.22
Consensus pattern (15 bp):
TGGGTGGTGGCAGCA
Left flanking sequence: Indices 476628 -- 477127
GCCGCGGGGTGTCCTGCAACGGCTTGGTGCGCCCCTCAGCGTCCGCCTGGAGACTCGGGATCAGG
TGGTAGGTGCGCAACGTCAGCCGCATCTCGGGGACAAAGTTGATGGTGGTGTTCATGCGCCCGGC
GTTGACCAAGAGGGTCACCTTGGCCACCAGCTCGCCCATGTCGCGGTCGCGGAGAAGCCGCTCCT
TGAGCACCTTCAGACACTTGCTCAGCTCGGCGATGGTGCGGATGTAGAGCTCGGCAAACAGCACC
CGGGGCGCGTTGTTGGCCATGGGGATGTCGGTCTGGGCAAAGTAGTTGGAGAAGCACGCGGTGGG
GTCGGCGAAGACGGCGGCCAAGAAGTCGTACTGGATGTCCTTGCGCCAGAACGGCTCGCCGTCGG
CCTTCTTGAGGTGGCGCAGCTTGGGCACGGTGCTGTTGTAGTACTTGCGTTTGCGGCGCAGGTCG
TCCTCCAGCGGGTCCAGGTCGGACGCTGTGGCGTGGGTGGCGGTG
Right flanking sequence: Indices 477165 -- 477664
GTGTTTGGCCTGGTTGTTGGACCAGTGGTTGGCCCGGTTGTTGGTGGGTGTGGCCCGGTTGTTGG
TGGCCAGGTGCACCGGGTGCACCGGGTGCGGTGCCCGGTGTGGGTGCAGGAGTGGCACTGGCAGC
ACCAGGTGTTGCACCCGCTGCACCAGGTGTGGCACCAGGAGTGGGTGCACCGGGAGCACTGGTTG
CACCGTTAACAGGCTGTCCTGGGCTCTGACCCGGCGGGATCGGGCCCAGCTGGGCCATAACAGGC
TGTCCTGGGCTCTGGCCACCTTGTGCTGGGCTGGCTTGGCTCTGGTTGAGCTGGCCCGGCTGGCC
CGGCTGGGCAGGCTGGGCGGGCTGCCCACCCTGGGGCGCCATCCCCATCGCCATCATCTGCCCAG
GCACTCCCTGGTACACGTAGGGCATCGCCAGCTGGTACACCATGTGCGCCGGCGGGGCGGGCGGA
GCCTGCCCCGGTGCGGGTGCCCCCAGCCCCGGCGCGGCGCCGCCG
Found at i:477308 original size:21 final size:21
Alignment explanation
Indices: 477276--477330 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
477266 GGTGTGGGTG
* **
477276 CAGGAGTGGCACTGGCAGCAC
1 CAGGTGTGGCACCCGCAGCAC
* *
477297 CAGGTGTTGCACCCGCTGCAC
1 CAGGTGTGGCACCCGCAGCAC
477318 CAGGTGTGGCACC
1 CAGGTGTGGCACC
477331 AGGAGTGGGT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.15
Consensus pattern (21 bp):
CAGGTGTGGCACCCGCAGCAC
Left flanking sequence: Indices 476776 -- 477275
CTTGGCCACCAGCTCGCCCATGTCGCGGTCGCGGAGAAGCCGCTCCTTGAGCACCTTCAGACACT
TGCTCAGCTCGGCGATGGTGCGGATGTAGAGCTCGGCAAACAGCACCCGGGGCGCGTTGTTGGCC
ATGGGGATGTCGGTCTGGGCAAAGTAGTTGGAGAAGCACGCGGTGGGGTCGGCGAAGACGGCGGC
CAAGAAGTCGTACTGGATGTCCTTGCGCCAGAACGGCTCGCCGTCGGCCTTCTTGAGGTGGCGCA
GCTTGGGCACGGTGCTGTTGTAGTACTTGCGTTTGCGGCGCAGGTCGTCCTCCAGCGGGTCCAGG
TCGGACGCTGTGGCGTGGGTGGCGGTGTGGGTGGTGGCAGCATGGGTGGTGGCAGCATGGGTGGG
TGTTTGGCCTGGTTGTTGGACCAGTGGTTGGCCCGGTTGTTGGTGGGTGTGGCCCGGTTGTTGGT
GGCCAGGTGCACCGGGTGCACCGGGTGCGGTGCCCGGTGTGGGTG
Right flanking sequence: Indices 477331 -- 477830
AGGAGTGGGTGCACCGGGAGCACTGGTTGCACCGTTAACAGGCTGTCCTGGGCTCTGACCCGGCG
GGATCGGGCCCAGCTGGGCCATAACAGGCTGTCCTGGGCTCTGGCCACCTTGTGCTGGGCTGGCT
TGGCTCTGGTTGAGCTGGCCCGGCTGGCCCGGCTGGGCAGGCTGGGCGGGCTGCCCACCCTGGGG
CGCCATCCCCATCGCCATCATCTGCCCAGGCACTCCCTGGTACACGTAGGGCATCGCCAGCTGGT
ACACCATGTGCGCCGGCGGGGCGGGCGGAGCCTGCCCCGGTGCGGGTGCCCCCAGCCCCGGCGCG
GCGCCGCCGTTGTACACGTACCCCATCGGCGGCAACGGCTGCACCAGCGGCAACTTGGGCTTGGG
CGGCAGCAGCAGCGCCTGGTCGTTGGCGTCCACGTAGGTGTCGTGGATCGGATCGTAGTTCATGG
GCGTCGTCCGGTTACGGTTTTTTTTGCTCAACAATCAAATTTTCG
Found at i:479031 original size:16 final size:16
Alignment explanation
Indices: 478979--479043 Score: 66
Period size: 15 Copynumber: 4.3 Consensus size: 16
478969 ACGGGGGAGA
* *
478979 AGAGTAAAGACACA-A
1 AGAGTAAAGAAACAGT
*
478994 AGAGTAAGGAAACAGT
1 AGAGTAAAGAAACAGT
*
479010 -GAGTAAAGAAAAAGT
1 AGAGTAAAGAAACAGT
479025 AGAGT-AAG-AACAGT
1 AGAGTAAAGAAACAGT
479039 AGAGT
1 AGAGT
479044 GAGAATAGCG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
14 10 0.24
15 28 0.67
16 4 0.10
ACGTcount: A:0.54, C:0.06, G:0.28, T:0.12
Consensus pattern (16 bp):
AGAGTAAAGAAACAGT
Left flanking sequence: Indices 478479 -- 478978
CATTGTGCCACCTCTGCGTCGCTTTTGTCGTGGTTGCTCGTGAGAACAAGAGACAAGGGGAAGAG
GAGGGGATGAGGGAGGGGGGTAGGGGGAGGGAGAGTGGGAGTGTGGATGGGATTTAGAGCAAGAC
GGGGTGATTCGGGGTGGTTAGAGTTGGGGTTGGGAAGGTGGTGGATGGTTGCGGGGACAGCTTGG
CTACAGCAATGGTCGCGCCCTCACCTTTTTTGTGATTAGCTGATTGTAGGGTCTACGGGTCTACG
CCGGGTCTACGTCGGGTACGCCAGGGTCTATGGGAGTGGAGAGGAGGGGAGAGGAGACAGGAGGG
AGTTAATTGGTTGGGGTAGGGAATGAGAAGGAGGTGGCAGAATGTATTAAGAGCGGAGGGGAGAA
GTAGAGGGTGGAAATGTCATTGCGTTCTTGGTGGGAGTCACGTAAGCCGTTGGTCCACGGACTAG
ACAGTCTTTTTTGGTGGTAGCGGTAGAGTAACGAAACGGGGGAGA
Right flanking sequence: Indices 479044 -- 479543
GAGAATAGCGGAGTAGAAACAATAGTGTAAAAAGAAAACTAAAAACCGGAGAGCATAGAGGCCGG
CCCCAACATATCTAGCCATTACTTGATACCAAACGACTGTAGCTCGTAGTAGCCTACCCATCTCC
AATGTCCGTCACCCCGGTTCCAGACTCGTCGTAAACCTGACCCGGCTGGGACGACGGCTCCTGCA
CAAAAACACTGTCAACGCGCTCTGCTGTACACAGGCCACCAGAGCTACCAACCATAATAGGTAGT
GTCGAGCCCGAGACAAAAGAAACACCGACAGCCAGTCACTGGTTGAGCGAGGCACAAAGAGATTT
GCGAGGTTCGTTGCTGATCAGCCCATTCCCGTTTGGCTCGTGTGCTCACGTGGGGACACAAAACG
GGTAACAATAGTAACGGCACTAGCGCGGTAAGCCTCCCGTAAGCCCCGTCAGCCTCGTGTGAGAG
CTGGGGAAGCCAGGGCGTAACCAATAGACGTTGGGGTTGACTCTA
Found at i:479692 original size:19 final size:19
Alignment explanation
Indices: 479663--479725 Score: 83
Period size: 20 Copynumber: 3.3 Consensus size: 19
479653 GGGGAGCAGA
479663 GAGCA-GGGGAGAAGAAAG
1 GAGCAGGGGGAGAAGAAAG
*
479681 GAGCAGGGGGAGAACAGAAG
1 GAGCAGGGGGAGAAGA-AAG
*
479701 GAGCAGGGGAAAGAAGAAAG
1 GAGCAGGGG-GAGAAGAAAG
479721 GAGCA
1 GAGCA
479726 TATGATAGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
18 5 0.13
19 9 0.23
20 20 0.51
21 5 0.13
ACGTcount: A:0.44, C:0.08, G:0.48, T:0.00
Consensus pattern (19 bp):
GAGCAGGGGGAGAAGAAAG
Left flanking sequence: Indices 479163 -- 479662
TACCCATCTCCAATGTCCGTCACCCCGGTTCCAGACTCGTCGTAAACCTGACCCGGCTGGGACGA
CGGCTCCTGCACAAAAACACTGTCAACGCGCTCTGCTGTACACAGGCCACCAGAGCTACCAACCA
TAATAGGTAGTGTCGAGCCCGAGACAAAAGAAACACCGACAGCCAGTCACTGGTTGAGCGAGGCA
CAAAGAGATTTGCGAGGTTCGTTGCTGATCAGCCCATTCCCGTTTGGCTCGTGTGCTCACGTGGG
GACACAAAACGGGTAACAATAGTAACGGCACTAGCGCGGTAAGCCTCCCGTAAGCCCCGTCAGCC
TCGTGTGAGAGCTGGGGAAGCCAGGGCGTAACCAATAGACGTTGGGGTTGACTCTACGACGGTAG
CCCGGGCCAAATCACGCCATAATTGCGGAAATCGTGGGCGTGGGCTACGGACCATGTGCGGTATT
TCCGAACCGTGGGTAAGCAACAATGCGGTGGAATAGGGGAGCAGA
Right flanking sequence: Indices 479726 -- 480225
TATGATAGGGGGCAGGGGTAAAATGAAGTAAAGGATCAGCCATTGTGTTGACCGTCAGTGATTTG
CAATTGGCTTGGTTCAATTCGCTTGGTTAATTAGCCGCTGAGTTAATTAGTCTGCTGGTAATTTG
AGGCACATGTAATTAGTCAGACGTGGTCGTCATTGGTCGCCAGCAGGGGGCAACCAGGCGCCGAC
CAGAACGGGTATGGCCCTGAGAGACCACAGGCTTCGTAACCGGTATCTATTCTCGTCTCGTCTAC
GTTATCGTCTACTTTTTTGTCTCGTCTATGGTCTTGTCTCGTCTACGTTCACATCTTGTCTATTC
TGGTCTACCTTCTCTACACCACACGTACCACCACGCGTCCTAAGCCCCAATGTGAGATCCTCTCC
ACCCTAAGAACGTTCGTGTTGTTCTGTCACATTCCGTTGACGATCGCGATCAGACCACCTATTCG
AGCCAAATACGGGGTGGAGCCGAGGTCGACGCGAAGGGCGGTGGA
Found at i:480369 original size:43 final size:43
Alignment explanation
Indices: 480289--480371 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 43
480279 GTTGATTAGG
*
480289 CTAGAGACTAGGAAGAGTATAGGGTTTTAAGTCCAGAGGCAGT
1 CTAGAGACTAGGAAGAGTATAGGGTTTCAAGTCCAGAGGCAGT
*
480332 CTAGAGACTAGGACG-GTATAGGTGGTTTCAAGT-CAGAGGC
1 CTAGAGACTAGGAAGAGTATA-G-GGTTTCAAGTCCAGAGGC
480372 GGACCAGACG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
42 5 0.14
43 22 0.61
44 9 0.25
ACGTcount: A:0.30, C:0.13, G:0.34, T:0.23
Consensus pattern (43 bp):
CTAGAGACTAGGAAGAGTATAGGGTTTCAAGTCCAGAGGCAGT
Left flanking sequence: Indices 479789 -- 480288
TGCAATTGGCTTGGTTCAATTCGCTTGGTTAATTAGCCGCTGAGTTAATTAGTCTGCTGGTAATT
TGAGGCACATGTAATTAGTCAGACGTGGTCGTCATTGGTCGCCAGCAGGGGGCAACCAGGCGCCG
ACCAGAACGGGTATGGCCCTGAGAGACCACAGGCTTCGTAACCGGTATCTATTCTCGTCTCGTCT
ACGTTATCGTCTACTTTTTTGTCTCGTCTATGGTCTTGTCTCGTCTACGTTCACATCTTGTCTAT
TCTGGTCTACCTTCTCTACACCACACGTACCACCACGCGTCCTAAGCCCCAATGTGAGATCCTCT
CCACCCTAAGAACGTTCGTGTTGTTCTGTCACATTCCGTTGACGATCGCGATCAGACCACCTATT
CGAGCCAAATACGGGGTGGAGCCGAGGTCGACGCGAAGGGCGGTGGATAGCGTGACCAACGCGCG
ATAAGGGTAGTTTGGTGGTTGCGGTAATTAGAGTGGTTGATTAGG
Right flanking sequence: Indices 480372 -- 480871
GGACCAGACGCGGTCTAGACGCGGTCTAGACGCGGTCTACGGTCTACGGTCTAGAGGCGACCTAA
ATGCTAGTGATTAGTCATGCTACCCGATTCGTATGCACCTGGAATCAGACCTAGACCGCGTATCA
GACCAAGCAGATATACCCCACAGTGGCCACAAACAGCCCTACTCCGCATTCACCACCCACAAACA
CACAAACGAACAACAAGGAACACAACACACAGGCAAACCCACCCAAATGTACACAATCTTCCGAG
ACCCATACTGGACAACTCCCTTCACCAAGCACACTGGACCAACATTCACACATCTAACTATTCGA
ACATTCGGCTATTCGACTATTCAACCAAGACCGTTCTCCACCTACTCACCAGCTTCTAACACCAT
TCTACTCTACCATTACTCACCAGTCTACACCATTCTCACGTGTCTCTACCATTACTCATCAGTCT
CTACCATTCTCACCAGTCTCTAAGTTCCCCTTTCACCCGTCACTA
Found at i:480384 original size:11 final size:11
Alignment explanation
Indices: 480365--480408 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
480355 GGTTTCAAGT
* *
480365 CAGAGGCGGAC
1 CAGACGCGGTC
480376 CAGACGCGGTC
1 CAGACGCGGTC
*
480387 TAGACGCGGTC
1 CAGACGCGGTC
*
480398 TAGACGCGGTC
1 CAGACGCGGTC
480409 TACGGTCTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.20, C:0.30, G:0.39, T:0.11
Consensus pattern (11 bp):
CAGACGCGGTC
Left flanking sequence: Indices 479865 -- 480364
TAATTAGTCAGACGTGGTCGTCATTGGTCGCCAGCAGGGGGCAACCAGGCGCCGACCAGAACGGG
TATGGCCCTGAGAGACCACAGGCTTCGTAACCGGTATCTATTCTCGTCTCGTCTACGTTATCGTC
TACTTTTTTGTCTCGTCTATGGTCTTGTCTCGTCTACGTTCACATCTTGTCTATTCTGGTCTACC
TTCTCTACACCACACGTACCACCACGCGTCCTAAGCCCCAATGTGAGATCCTCTCCACCCTAAGA
ACGTTCGTGTTGTTCTGTCACATTCCGTTGACGATCGCGATCAGACCACCTATTCGAGCCAAATA
CGGGGTGGAGCCGAGGTCGACGCGAAGGGCGGTGGATAGCGTGACCAACGCGCGATAAGGGTAGT
TTGGTGGTTGCGGTAATTAGAGTGGTTGATTAGGCTAGAGACTAGGAAGAGTATAGGGTTTTAAG
TCCAGAGGCAGTCTAGAGACTAGGACGGTATAGGTGGTTTCAAGT
Right flanking sequence: Indices 480409 -- 480908
TACGGTCTACGGTCTAGAGGCGACCTAAATGCTAGTGATTAGTCATGCTACCCGATTCGTATGCA
CCTGGAATCAGACCTAGACCGCGTATCAGACCAAGCAGATATACCCCACAGTGGCCACAAACAGC
CCTACTCCGCATTCACCACCCACAAACACACAAACGAACAACAAGGAACACAACACACAGGCAAA
CCCACCCAAATGTACACAATCTTCCGAGACCCATACTGGACAACTCCCTTCACCAAGCACACTGG
ACCAACATTCACACATCTAACTATTCGAACATTCGGCTATTCGACTATTCAACCAAGACCGTTCT
CCACCTACTCACCAGCTTCTAACACCATTCTACTCTACCATTACTCACCAGTCTACACCATTCTC
ACGTGTCTCTACCATTACTCATCAGTCTCTACCATTCTCACCAGTCTCTAAGTTCCCCTTTCACC
CGTCACTACCCTCCCTACTTCTCTTCCCACCTTCAACTCCCACCC
Found at i:480409 original size:11 final size:11
Alignment explanation
Indices: 480377--480410 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
480367 GAGGCGGACC
480377 AGACGCGGTCT
1 AGACGCGGTCT
480388 AGACGCGGTCT
1 AGACGCGGTCT
480399 AGACGCGGTCT
1 AGACGCGGTCT
480410 A
1 A
480411 CGGTCTACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.21, C:0.26, G:0.35, T:0.18
Consensus pattern (11 bp):
AGACGCGGTCT
Left flanking sequence: Indices 479877 -- 480376
CGTGGTCGTCATTGGTCGCCAGCAGGGGGCAACCAGGCGCCGACCAGAACGGGTATGGCCCTGAG
AGACCACAGGCTTCGTAACCGGTATCTATTCTCGTCTCGTCTACGTTATCGTCTACTTTTTTGTC
TCGTCTATGGTCTTGTCTCGTCTACGTTCACATCTTGTCTATTCTGGTCTACCTTCTCTACACCA
CACGTACCACCACGCGTCCTAAGCCCCAATGTGAGATCCTCTCCACCCTAAGAACGTTCGTGTTG
TTCTGTCACATTCCGTTGACGATCGCGATCAGACCACCTATTCGAGCCAAATACGGGGTGGAGCC
GAGGTCGACGCGAAGGGCGGTGGATAGCGTGACCAACGCGCGATAAGGGTAGTTTGGTGGTTGCG
GTAATTAGAGTGGTTGATTAGGCTAGAGACTAGGAAGAGTATAGGGTTTTAAGTCCAGAGGCAGT
CTAGAGACTAGGACGGTATAGGTGGTTTCAAGTCAGAGGCGGACC
Right flanking sequence: Indices 480411 -- 480910
CGGTCTACGGTCTAGAGGCGACCTAAATGCTAGTGATTAGTCATGCTACCCGATTCGTATGCACC
TGGAATCAGACCTAGACCGCGTATCAGACCAAGCAGATATACCCCACAGTGGCCACAAACAGCCC
TACTCCGCATTCACCACCCACAAACACACAAACGAACAACAAGGAACACAACACACAGGCAAACC
CACCCAAATGTACACAATCTTCCGAGACCCATACTGGACAACTCCCTTCACCAAGCACACTGGAC
CAACATTCACACATCTAACTATTCGAACATTCGGCTATTCGACTATTCAACCAAGACCGTTCTCC
ACCTACTCACCAGCTTCTAACACCATTCTACTCTACCATTACTCACCAGTCTACACCATTCTCAC
GTGTCTCTACCATTACTCATCAGTCTCTACCATTCTCACCAGTCTCTAAGTTCCCCTTTCACCCG
TCACTACCCTCCCTACTTCTCTTCCCACCTTCAACTCCCACCCAC
Done.