../ base_freqs.dat 16-Mar-2025 20:55 68 filtered_test1_1_screen.html 16-Mar-2025 20:55 3M filtered_test1_1_screen.txt 16-Mar-2025 20:55 1131 filtered_test1_2_screen.html 16-Mar-2025 20:55 3M filtered_test1_2_screen.txt 16-Mar-2025 20:55 1133 filtered_test2_1_screen.html 16-Mar-2025 20:55 3M filtered_test2_1_screen.txt 16-Mar-2025 20:55 1148 filtered_test2_2_screen.html 16-Mar-2025 20:55 3M filtered_test2_2_screen.txt 16-Mar-2025 20:55 1151 filtered_test3_1_screen.html 16-Mar-2025 20:55 3M filtered_test3_1_screen.txt 16-Mar-2025 20:55 1127 filtered_test3_2_screen.html 16-Mar-2025 20:55 3M filtered_test3_2_screen.txt 16-Mar-2025 20:55 1133 filtered_test4_1_screen.html 16-Mar-2025 20:55 3M filtered_test4_1_screen.txt 16-Mar-2025 20:55 1152 filtered_test4_2_screen.html 16-Mar-2025 20:55 3M filtered_test4_2_screen.txt 16-Mar-2025 20:55 1152 filtered_test5_1_screen.html 16-Mar-2025 20:55 3M filtered_test5_1_screen.txt 16-Mar-2025 20:55 1146 filtered_test5_2_screen.html 16-Mar-2025 20:55 3M filtered_test5_2_screen.txt 16-Mar-2025 20:55 1150 filtered_test6_1_screen.html 16-Mar-2025 20:55 3M filtered_test6_1_screen.txt 16-Mar-2025 20:55 1128 filtered_test6_2_screen.html 16-Mar-2025 20:55 3M filtered_test6_2_screen.txt 16-Mar-2025 20:55 1132 filtered_test7_1_screen.html 16-Mar-2025 20:55 3M filtered_test7_1_screen.txt 16-Mar-2025 20:55 1125 filtered_test7_2_screen.html 16-Mar-2025 20:55 3M filtered_test7_2_screen.txt 16-Mar-2025 20:55 1131 filtered_test8_1_screen.html 16-Mar-2025 20:55 3M filtered_test8_1_screen.txt 16-Mar-2025 20:55 1129 filtered_test8_2_screen.html 16-Mar-2025 20:55 3M filtered_test8_2_screen.txt 16-Mar-2025 20:55 1135 filtered_test9_1_screen.html 16-Mar-2025 20:55 3M filtered_test9_1_screen.txt 16-Mar-2025 20:55 1150 filtered_test9_2_screen.html 16-Mar-2025 20:55 3M filtered_test9_2_screen.txt 16-Mar-2025 20:55 1151 hexamer.scores 16-Mar-2025 20:55 525K longestSeq.pep 16-Mar-2025 20:55 11M longest_orfs.cds 16-Mar-2025 20:55 90M longest_orfs.cds.best_candidates.gff3 16-Mar-2025 20:55 41M longest_orfs.cds.best_candidates.gff3.revised_s..> 16-Mar-2025 20:55 41M longest_orfs.cds.scores 16-Mar-2025 20:55 10M longest_orfs.cds.top_500_longest 16-Mar-2025 20:55 2M longest_orfs.cds.top_longest_5000 16-Mar-2025 20:55 9M longest_orfs.cds.top_longest_5000.nr 16-Mar-2025 20:55 9M longest_orfs.gff3 16-Mar-2025 20:55 115M longest_orfs.pep 16-Mar-2025 20:55 40M pipeliner.12552.cmds 16-Mar-2025 20:55 4650 pipeliner.7284.cmds 16-Mar-2025 20:55 339 pipeliner.9176.cmds 16-Mar-2025 20:55 4899 start_refinement.+.features 16-Mar-2025 20:55 18K start_refinement.+.pwm 16-Mar-2025 20:55 1289 start_refinement.+.pwm.seqLogo.pdf 16-Mar-2025 20:55 184K start_refinement.-.features 16-Mar-2025 20:55 821K start_refinement.-.pwm 16-Mar-2025 20:55 1289 start_refinement.-.pwm.seqLogo.pdf 16-Mar-2025 20:55 173K start_refinement.alt_start_scores 16-Mar-2025 20:55 713K start_refinement.enhanced.+.features 16-Mar-2025 20:55 3468 start_refinement.enhanced.+.pwm 16-Mar-2025 20:55 1289 start_refinement.enhanced.+.pwm.seqLogo.pdf 16-Mar-2025 20:55 210K start_refinement.enhanced.feature.scores 16-Mar-2025 20:55 15M start_refinement.enhanced.feature.scores.roc 16-Mar-2025 20:55 115K start_refinement.enhanced.feature.scores.roc.auc 16-Mar-2025 20:55 4327 start_refinement.enhanced.feature.scores.roc.au..> 16-Mar-2025 20:55 879 start_refinement.enhanced.feature.scores.roc.au..> 16-Mar-2025 20:55 8894 start_refinement.enhanced.feature.scores.roc.pl..> 16-Mar-2025 20:55 19K start_refinement.feature.scores 16-Mar-2025 20:55 16M start_refinement.feature.scores.roc 16-Mar-2025 20:55 110K start_refinement.feature.scores.roc.auc 16-Mar-2025 20:55 4446 start_refinement.feature.scores.roc.auc.plot.Rs..> 16-Mar-2025 20:55 861 start_refinement.feature.scores.roc.auc.plot.pdf 16-Mar-2025 20:55 8788 start_refinement.feature.scores.roc.plot.pdf 16-Mar-2025 20:55 21K