Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_8

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 19559
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20


Found at i:14086 original size:21 final size:21

Alignment explanation


    Indices: 14060--14102  Score: 58
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      14050 TCTCGTTGTC

                       *         
      14060 GTCGGTGACGGTAAGGGAAAG
          1 GTCGGTGACGGCAAGGGAAAG

                   **        *   
      14081 GTCGGTGTTGGCAAGGGCAAG
          1 GTCGGTGACGGCAAGGGAAAG

             
      14102 G
          1 G

      14103 CAGCTGAGGC


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16


Consensus pattern (21 bp):   
GTCGGTGACGGCAAGGGAAAG
Done.