Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_75

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 9838
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22


Found at i:3454 original size:18 final size:18

Alignment explanation


    Indices: 3431--3476  Score: 78
    Period size: 18  Copynumber: 2.6  Consensus size: 18

       3421 CAGCTCCCGC

                     *        
       3431 AGGCGGAGGGATGCGCGG
          1 AGGCGGAGGAATGCGCGG

                              
       3449 AGGCGGAGGAATGCGCGG
          1 AGGCGGAGGAATGCGCGG

            *         
       3467 GGGCGGAGGA
          1 AGGCGGAGGA

       3477 CGCCGCTAAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.20, C:0.15, G:0.61, T:0.04


Consensus pattern (18 bp):   
AGGCGGAGGAATGCGCGG
Done.