Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_71

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 10351
ACGTcount: A:0.23, C:0.26, G:0.30, T:0.21


Found at i:7114 original size:25 final size:22

Alignment explanation


    Indices: 7086--7140  Score: 62
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       7076 TTCCAAATAA

                                     
       7086 CAAGCACCAAGAATCAAATAAATTC
          1 CAAGCACCAA-AATC-AA-AAATTC

                   *   *  *       
       7111 CAAGCACTAAACTCCAAAATTC
          1 CAAGCACCAAAATCAAAAATTC

                    
       7133 CAAGCACC
          1 CAAGCACC

       7141 TTGGCCAATG


Statistics
Matches: 26,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  22   13  0.50
  23    1  0.04
  24    3  0.12
  25    9  0.35

ACGTcount: A:0.47, C:0.31, G:0.07, T:0.15


Consensus pattern (22 bp):   
CAAGCACCAAAATCAAAAATTC
Done.