Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_316

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 3479
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21


Found at i:2653 original size:21 final size:23

Alignment explanation


    Indices: 2629--2672  Score: 60
    Period size: 22  Copynumber: 2.0  Consensus size: 23

       2619 ACCTGAAGGT

                                   
       2629 CATCG-GCCTGATACCG-TCCGG
          1 CATCGAGCCTGATACCGTTCCGG

                   *      *        
       2650 CATCGAGGCTGATATCGTTCCGG
          1 CATCGAGCCTGATACCGTTCCGG

       2673 TGGGAAATGC


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21    5  0.26
  22    9  0.47
  23    5  0.26

ACGTcount: A:0.16, C:0.32, G:0.30, T:0.23


Consensus pattern (23 bp):   
CATCGAGCCTGATACCGTTCCGG

Done.