Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_235

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 4660
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23


Found at i:1248 original size:15 final size:15

Alignment explanation


    Indices: 1230--1269  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1220 AAACGCTTAG

                    *       
       1230 AAAGAAAGTAACC-GC
          1 AAAGAAA-AAACCGGC

                           
       1245 AAAGAAAAAACCGGC
          1 AAAGAAAAAACCGGC

                      
       1260 AAAGAAAAAA
          1 AAAGAAAAAA

       1270 ATCATTGCCA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  14    4  0.17
  15   19  0.83

ACGTcount: A:0.65, C:0.15, G:0.17, T:0.03


Consensus pattern (15 bp):   
AAAGAAAAAACCGGC

Done.