Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_190

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 5367
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23


Found at i:2611 original size:21 final size:21

Alignment explanation


    Indices: 2576--2624  Score: 63
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       2566 CGTGCGATGG

                * *              
       2576 CCGATCGAACACGCATGGAAA
          1 CCGAACAAACACGCATGGAAA

            *         *         *
       2597 TCGAACAAACGCGCATGGAAT
          1 CCGAACAAACACGCATGGAAA

                   
       2618 CCGAACA
          1 CCGAACA

       2625 GCATATCGTC


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.39, C:0.29, G:0.22, T:0.10


Consensus pattern (21 bp):   
CCGAACAAACACGCATGGAAA
Done.