Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_154

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 6256
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21


Found at i:4410 original size:12 final size:12

Alignment explanation


    Indices: 4393--4420  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       4383 TCATCTTTTC

                        
       4393 GATCGGAGCCAT
          1 GATCGGAGCCAT

                        
       4405 GATCGGAGCCAT
          1 GATCGGAGCCAT

                
       4417 GATC
          1 GATC

       4421 ACGATGTACG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.25, C:0.25, G:0.32, T:0.18


Consensus pattern (12 bp):   
GATCGGAGCCAT
Done.