Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_143

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 6431
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24


Found at i:2843 original size:37 final size:37

Alignment explanation


    Indices: 2793--2872  Score: 160
    Period size: 37  Copynumber: 2.2  Consensus size: 37

       2783 TCTAATTCAT

                                                 
       2793 CCATTTCGTGACACCGGCGGCCGATCTTGTATTGAGG
          1 CCATTTCGTGACACCGGCGGCCGATCTTGTATTGAGG

                                                 
       2830 CCATTTCGTGACACCGGCGGCCGATCTTGTATTGAGG
          1 CCATTTCGTGACACCGGCGGCCGATCTTGTATTGAGG

                  
       2867 CCATTT
          1 CCATTT

       2873 GCGATATTGC


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   43  1.00

ACGTcount: A:0.16, C:0.28, G:0.28, T:0.29


Consensus pattern (37 bp):   
CCATTTCGTGACACCGGCGGCCGATCTTGTATTGAGG
Done.