Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_458

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1308

Length: 2181
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29


Found at i:1972 original size:25 final size:25

Alignment explanation


    Indices: 1935--1982  Score: 66
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       1925 AAACCATGTC

                          *           
       1935 GGCTGGCATAAAAAGGTTCATCATCG
          1 GGCTGGCATAAAAAAGTTC-TCATCG

                *                  
       1961 GGCTTGCA-AAAAAAGTTCTCAT
          1 GGCTGGCATAAAAAAGTTCTCAT

       1983 TGCAAATACA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  24    4  0.20
  25    9  0.45
  26    7  0.35

ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25


Consensus pattern (25 bp):   
GGCTGGCATAAAAAAGTTCTCATCG

Done.