Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_401

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1599

Length: 2665
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23


Found at i:2224 original size:16 final size:16

Alignment explanation


    Indices: 2203--2236  Score: 54
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2193 CAAACCATTC

                            
       2203 GTTGTCAATTGATTAT
          1 GTTGTCAATTGATTAT

                  **        
       2219 GTTGTCTTTTGATTAT
          1 GTTGTCAATTGATTAT

              
       2235 GT
          1 GT

       2237 GTCGTGTGTC


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.18, C:0.06, G:0.21, T:0.56


Consensus pattern (16 bp):   
GTTGTCAATTGATTAT
Done.