Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MAG.C2.12_contig_236
Parameters: 2 5 7 80 10 50 2000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000
Length: 4640
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Found at i:2415 original size:339 final size:338
Alignment explanation
Indices: 1795--2463 Score: 1119
Period size: 339 Copynumber: 2.0 Consensus size: 338
1785 ATACATATGA
** * * *
1795 TGCTGGAGAAGCGTCGGTATAAGAGATTCATGTTGGATTTAATAGAAGTCAACGGCAAGCTGAGT
1 TGCTGGAGAAAAGACGGCATAAGAGATTCATGTTGGATTTAATAGAAATCAACGGCAAGCTGAGT
*
1860 TTAACCGATAAAGTGGAGATCATTGACATCAGTTTCGGAGGAGTCGCCTTGAAAGCGGACAGGAG
66 TTAACCGATAAAGTGGAGATCATTGACATCAGTTTCGGAGGAGTCGCCCTGAAAGCGGACAGGAG
* * * *
1925 GCTTAATATCGGCAAAGAATATTTGTTTACGCTCCGGGACAAGGGGAATCATCTCGTTGTGAAGG
131 ACTTAATATCGGAAAAGAATATTTATTTACGCTCCGAGACAAGGGGAATCATCTCGTTGTGAAGG
* *
1990 GCACTGTAGTTCGTTGCAAATTAAGCGGAATCGCAGAAAGATACAACAGGGAAAGGGCCTTAATA
196 GCACTGTAGTTCGTTGCAAATTAAGCGGAATCGAAGAAAAATACAACAGGGAAAGGGCCTTAATA
*
2055 TACACAGCCGGCATGAGATTTGAAGAGGGCTCAGCAGATAAGATTGCCGATTTTATTCGCAATTC
261 TACACAGCCGGCATGAGATTTGAAGAGGACTCAGCAGATAAGATTGCCGATTTTATTCGCAATTC
2120 ACATCTAGTTTTTT
326 A-ATCTAGTTTTTT
* * *
2134 TGCTGGAGAAAAGACGGCATAAGAGATTCGTGTTGGATTTAATAGAAATCAGCGGCAGGCTGAGT
1 TGCTGGAGAAAAGACGGCATAAGAGATTCATGTTGGATTTAATAGAAATCAACGGCAAGCTGAGT
* * * *
2199 TTAATCGATAAAGTTGAGATCATTGACATCAGTTTCGGCGGAGTTGCCCTGAAAGCGGACAGGAG
66 TTAACCGATAAAGTGGAGATCATTGACATCAGTTTCGGAGGAGTCGCCCTGAAAGCGGACAGGAG
* ** * *
2264 ACTTGATATCGGAAAAGAATATTTATTTACGCTTGGAGACAGGGGGAATCGTCTCGTTGTGAAGG
131 ACTTAATATCGGAAAAGAATATTTATTTACGCTCCGAGACAAGGGGAATCATCTCGTTGTGAAGG
* * *
2329 GCATTGTAGTTCGTTGCAAATTAAGCGGAATCGAAGAAAAATACAGCGGGGAAAGGGCCTTAATA
196 GCACTGTAGTTCGTTGCAAATTAAGCGGAATCGAAGAAAAATACAACAGGGAAAGGGCCTTAATA
* *
2394 TACACAGCCGGCATGAGATTTGAAGAGGACTCGGCAGATAAGATTGCCGATTTTATTCGTAATTC
261 TACACAGCCGGCATGAGATTTGAAGAGGACTCAGCAGATAAGATTGCCGATTTTATTCGCAATTC
2459 AATCT
326 AATCT
2464 TAGCATAGCA
Statistics
Matches: 300, Mismatches: 30, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
338 4 0.01
339 296 0.99
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (338 bp):
TGCTGGAGAAAAGACGGCATAAGAGATTCATGTTGGATTTAATAGAAATCAACGGCAAGCTGAGT
TTAACCGATAAAGTGGAGATCATTGACATCAGTTTCGGAGGAGTCGCCCTGAAAGCGGACAGGAG
ACTTAATATCGGAAAAGAATATTTATTTACGCTCCGAGACAAGGGGAATCATCTCGTTGTGAAGG
GCACTGTAGTTCGTTGCAAATTAAGCGGAATCGAAGAAAAATACAACAGGGAAAGGGCCTTAATA
TACACAGCCGGCATGAGATTTGAAGAGGACTCAGCAGATAAGATTGCCGATTTTATTCGCAATTC
AATCTAGTTTTTT
Done.