Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_223

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 4766
ACGTcount: A:0.20, C:0.28, G:0.26, T:0.25


Found at i:467 original size:7 final size:7

Alignment explanation


    Indices: 451--483  Score: 52
    Period size: 7  Copynumber: 4.7  Consensus size: 7

        441 GGTATGAAAC

                   
        451 AAATTCA
          1 AAATTCA

                 * 
        458 AAATTTA
          1 AAATTCA

                   
        465 AAATTCA
          1 AAATTCA

             *     
        472 AGATTCA
          1 AAATTCA

                 
        479 AAATT
          1 AAATT

        484 TATGGTATAG


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.55, C:0.09, G:0.03, T:0.33


Consensus pattern (7 bp):   
AAATTCA

Done.