Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_186

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 5527
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25


Found at i:4037 original size:12 final size:12

Alignment explanation


    Indices: 4020--4045  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       4010 TAATTCAACG

                        
       4020 TGTAGGGTATCT
          1 TGTAGGGTATCT

                        
       4032 TGTAGGGTATCT
          1 TGTAGGGTATCT

              
       4044 TG
          1 TG

       4046 ACTTTTTGAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.15, C:0.08, G:0.35, T:0.42


Consensus pattern (12 bp):   
TGTAGGGTATCT
Done.