<> <> <> <> chromosomes_units = 10000 chromosomes_display_default = yes # chromosomes_order = chr1,chr2 ### single genomes # specify the karyotype file here - try other karyotypes in data/karyotype karyotype = karyotype.txt # karyotype = data/karyotype/karyotype.drosophila.txt # karyotype = data/karyotype/karyotype.mouse.txt # karyotype = data/karyotype/karyotype.rat.txt ### multiple genomes # to draw chromosomes from multiple karyotypes, # provide comma-separated list of files # karyotype = data/karyotype/karyotype.human.txt # adjust color using regular expressions matching chromosome names # chromosomes_color = /hs/:red;/mm/:green;/rn/:blue file = highlight_spec.txt r0 = 1.15r r1 = 1.18r file = highlight_site.txt r0 = 1.19r r1 = 1.22r file = highlight_all.txt r0 = 1.23r r1 = 1.26r file = highlight_spec.txt r0 = 0.98r r1 = 1r file = highlight_site.txt r0 = 0.85r r1 = 0.98r stroke_color = black stroke_thickness = 2 radius = 0.98r ribbon = yes # bezier_radius = 0.55r flat = yes file = links.txt stroke_color = black stroke_thickness = 1 condition = 1 radius1 = 0.96r type = text color = black label_size = 24p label_font = mono label_format = eval(sprintf("%d%",var(label))) # #file = label.txt #r0 = 1.26r #r1 = 1.3r #show_links = yes #link_color = black # <>