Call: rda(X = env_in, scale = F) Partitioning of variance: Inertia Proportion Total 3488280 1 Unconstrained 3488280 1 Eigenvalues, and their contribution to the variance Importance of components: PC1 PC2 PC3 PC4 PC5 Eigenvalue 3.286e+06 1.846e+05 8.220e+03 4.969e+03 2.270e+03 Proportion Explained 9.421e-01 5.292e-02 2.357e-03 1.425e-03 6.508e-04 Cumulative Proportion 9.421e-01 9.951e-01 9.974e-01 9.988e-01 9.995e-01 PC6 PC7 PC8 PC9 PC10 Eigenvalue 8.786e+02 4.017e+02 2.208e+02 1.394e+02 8.724e+01 Proportion Explained 2.519e-04 1.152e-04 6.329e-05 3.996e-05 2.501e-05 Cumulative Proportion 9.997e-01 9.999e-01 9.999e-01 1.000e+00 1.000e+00 PC11 Eigenvalue 3.737e+01 Proportion Explained 1.071e-05 Cumulative Proportion 1.000e+00 Scaling 2 for species and site scores * Species are scaled proportional to eigenvalues * Sites are unscaled: weighted dispersion equal on all dimensions * General scaling constant of scores: 78.70476 Species scores PC1 PC2 PC3 PC4 PC5 PC6 Col3a1 -61.247276 7.57076 -0.13766 -0.767921 -0.266813 0.139906 Rpl7 -13.049584 -11.75642 1.57176 -1.121444 0.391525 0.116642 Gsta3 34.365177 8.45427 0.94745 -2.094568 0.182615 -0.011462 Col5a2 -22.987411 1.81043 0.63466 -0.122020 0.708216 -0.697942 Rpl31 -5.517853 -4.11963 -0.98444 -1.038556 -0.350036 0.322397 Cox5b 3.015355 -0.31425 -2.47858 -0.346387 0.992816 0.066873 Eef1b2 -4.483720 -4.88627 -0.10605 -0.519673 -0.441071 -0.606051 Hspe1 0.594297 -1.53407 -0.52755 -0.267953 -0.170391 -0.271800 Hspd1 2.905289 1.13931 0.74039 0.263251 -0.347168 0.125337 Ecrg4 -5.833238 -1.89358 -0.25516 -0.398837 -0.435056 0.376595 Il1rl1 -5.726674 0.39422 1.05772 0.481995 1.039525 0.251924 Tram1 -0.401996 0.60213 0.31808 0.154783 0.011155 0.059227 Bzw1 -1.523534 0.74006 0.49502 0.249427 0.024873 0.151039 Lypla1 1.702176 0.82831 0.29849 0.212065 -0.146090 -0.003462 Lactb2 3.021449 0.97046 0.26648 0.124782 -0.180805 -0.062805 Snhg6 -1.474431 -1.55692 -0.01549 -0.227266 0.050877 0.073914 Map4k4 -3.783380 0.38545 0.22519 0.125447 0.136849 0.282980 Sumo1 -1.371599 -0.88002 0.05061 -0.117049 0.040056 0.111389 Cops5 -0.457344 -0.21214 0.16807 0.018602 -0.000949 0.025318 Ndufb3 0.535837 -0.13693 -0.36750 -0.190307 0.152122 -0.023894 Actr1b -1.194266 0.04630 0.10216 0.004513 -0.067403 -0.006459 Slc40a1 1.693919 0.65372 0.29480 0.299379 -0.243684 -0.029020 Hs6st1 1.786451 0.62261 -0.05925 0.060613 0.042992 -0.063506 Unc50 -0.815573 0.07248 -0.03063 -0.024552 -0.045905 0.034818 Coa5 -0.019158 0.37951 0.20175 0.150246 0.006127 0.004661 Rnf149 -1.050296 0.28661 0.02899 0.018635 -0.141286 0.144285 Fam168b -0.959702 0.38584 0.14947 0.138339 0.009645 0.044229 Aox3 2.261097 0.55321 0.35560 0.135334 -0.385962 -0.089160 Sf3b1 -0.899763 0.40169 0.23801 0.146533 0.091810 0.091835 Ndufs1 0.448526 0.33385 0.19199 0.147995 -0.091160 -0.018213 Sulf1 -2.398042 0.35257 0.22916 0.095096 0.209200 0.067638 Hibch 1.307771 0.31906 0.05659 0.025851 -0.019899 -0.028031 Nrp2 -1.882075 0.35731 0.23272 0.104741 0.094662 0.094191 Tcea1 -0.492849 0.29749 0.19107 0.105697 -0.006818 -0.006702 Nab1 -0.362316 0.36171 0.16071 0.097224 -0.028279 0.084259 Atp6v1h -0.919546 -0.06519 0.12170 -0.005489 0.005345 0.044505 Myo1b 0.957988 0.37538 0.30630 0.140079 -0.253916 -0.033458 Tmem70 0.124853 0.13749 0.10265 0.002797 0.010753 -0.014618 Stat1 -0.570833 0.28562 0.41141 0.116435 0.079070 0.191796 Pdcl3 -0.965917 -0.39370 -0.01177 -0.041979 -0.012794 0.058384 Uggt1 -1.081162 0.17474 0.16445 0.086428 0.045103 -0.004338 Sdhaf4 -0.011444 -0.29787 -0.09372 -0.064037 -0.011134 -0.071236 Rrs1 -0.914399 0.11220 -0.06937 0.029928 -0.025728 -0.017891 Clk1 -0.668145 0.05894 0.07840 0.072530 0.100743 0.073776 Mrpl30 0.003334 -0.18135 -0.01245 -0.044893 0.014486 -0.014521 Nop58 -0.963152 0.05657 0.12783 0.049007 0.077662 0.068278 Adhfe1 1.204749 0.34011 -0.06627 0.053215 0.078613 -0.020033 Ptp4a1 -0.070699 0.28072 0.04254 -0.029021 0.192622 0.093302 Cyp20a1 -0.753736 0.18537 0.11426 0.042720 0.019167 -0.027042 Tpp2 -0.631861 0.27156 0.14763 0.086931 0.086802 0.060948 Site scores (weighted sums of species scores) PC1 PC2 PC3 PC4 PC5 PC6 C1 -24.915 5.044 0.5724 -0.1746 13.577 -57.9700 C2 -5.267 -74.057 -3.0557 -7.7515 -6.696 2.8594 C3 -26.881 11.918 -15.6384 -18.5422 -17.809 -20.4995 T10 -26.137 15.443 -33.7810 -5.7741 -35.615 34.2916 T11 -25.989 7.332 32.3192 3.5390 23.542 28.1460 T12 -23.228 2.666 20.5742 24.9283 22.418 14.3352 TC1 21.844 3.567 31.3062 4.5240 -25.675 0.5626 TC2 21.776 1.835 -43.1409 -3.8881 47.898 11.0493 TC3 22.415 6.465 11.4768 -13.7779 -8.414 -1.9705 TC4 23.160 12.240 4.0736 -20.8829 5.811 -1.8109 C5 20.894 1.898 -15.2107 62.1856 -15.987 -10.0596 T13 22.328 5.650 10.5042 -24.3857 -3.051 1.0664