Call: rda(X = otu, scale = FALSE) Partitioning of variance: Inertia Proportion Total 0.008309 1 Unconstrained 0.008309 1 Eigenvalues, and their contribution to the variance Importance of components: PC1 PC2 PC3 PC4 PC5 PC6 Eigenvalue 0.005064 0.001267 0.0008067 0.00047 0.0002996 0.0001377 Proportion Explained 0.609424 0.152496 0.0970863 0.05656 0.0360531 0.0165716 Cumulative Proportion 0.609424 0.761921 0.8590069 0.91557 0.9516245 0.9681961 PC7 PC8 PC9 PC10 PC11 Eigenvalue 0.0001205 5.851e-05 3.506e-05 2.856e-05 2.164e-05 Proportion Explained 0.0145001 7.042e-03 4.219e-03 3.438e-03 2.604e-03 Cumulative Proportion 0.9826962 9.897e-01 9.940e-01 9.974e-01 1.000e+00 Scaling 2 for species and site scores * Species are scaled proportional to eigenvalues * Sites are unscaled: weighted dispersion equal on all dimensions * General scaling constant of scores: 0.5498337 Species scores PC1 PC2 PC3 PC4 PC5 PC6 map03010 -0.0714201 0.0040695 0.0345261 -0.0517922 -0.0126125 0.0247153 map00473 -0.2201633 0.0156378 0.0022364 0.0144329 -0.0052598 -0.0114895 map00471 -0.1176330 0.0168998 0.0126659 -0.0084968 0.0154960 0.0008589 map00970 -0.0331289 0.0044885 -0.0192830 0.0204478 -0.0208326 0.0069104 map04112 -0.0559739 0.0076494 0.0211730 0.0004707 0.0094389 0.0083052 map00710 0.0210406 -0.0134503 -0.0044840 0.0028013 -0.0280545 0.0069720 map01230 0.0052917 -0.0177651 -0.0386901 0.0048594 0.0084166 0.0019985 map00550 -0.0800802 -0.0128916 -0.0002463 0.0119375 0.0149553 -0.0006758 map00290 0.1476762 -0.0347580 -0.0625980 -0.0104339 0.0160765 -0.0066884 map03430 -0.0305828 -0.0124331 0.0027510 0.0176531 -0.0110247 0.0331048 map03060 -0.0723297 -0.0082872 -0.0176699 0.0032659 0.0010439 -0.0146728 map00521 0.0418243 -0.0267102 0.0130324 0.0753324 0.0033541 -0.0010235 map00670 -0.0575980 -0.0002130 -0.0231493 0.0085721 -0.0036011 -0.0061790 map00300 -0.0822109 -0.0251245 -0.0154059 0.0310553 0.0122639 -0.0063431 map00010 -0.0388405 0.0039162 0.0108435 0.0060910 -0.0024889 -0.0001577 map00983 -0.0372697 0.0050769 0.0347835 0.0018114 0.0090947 -0.0031447 map01502 -0.0801873 -0.0097736 -0.0106534 0.0048060 0.0096911 -0.0032016 map00250 -0.0015465 -0.0115948 -0.0212521 0.0038958 0.0095210 0.0040292 map00770 -0.0019653 0.0020787 0.0170117 -0.0091892 0.0182096 -0.0096146 map00730 -0.0417272 0.0226397 0.0118149 -0.0050373 0.0119430 0.0069554 map00072 -0.0812290 0.0874063 -0.0594539 0.0112372 -0.0176636 0.0034228 map00785 0.0690391 0.1395956 -0.0385183 0.0106734 -0.0130343 -0.0033718 map00500 -0.0637286 -0.0441407 -0.0356516 -0.0154164 -0.0331358 -0.0088842 map03440 -0.0426402 -0.0158103 -0.0135646 0.0022936 0.0056647 0.0078821 map00620 -0.0158478 0.0176688 0.0107066 0.0005813 0.0006739 -0.0042440 map00030 -0.0100383 -0.0254521 0.0081691 0.0037492 -0.0040542 -0.0090405 map03410 -0.0734466 0.0027969 -0.0090032 0.0111488 -0.0021053 -0.0058775 map00240 -0.0417830 -0.0071292 0.0043225 0.0000555 0.0055640 -0.0004495 map00270 -0.0357621 -0.0261487 -0.0125393 0.0064100 0.0158446 -0.0053638 map03030 -0.0526008 -0.0030674 -0.0029894 0.0100176 0.0102485 0.0115649 map03070 0.0789186 -0.0303779 0.0337533 0.0319497 -0.0543008 -0.0002951 map00052 -0.0177530 -0.0417385 0.0159044 0.0100135 -0.0055930 -0.0073797 map00260 -0.0248303 -0.0057261 -0.0108344 -0.0075731 0.0139462 0.0028812 map00450 0.0083808 -0.0142399 -0.0468256 -0.0070898 0.0100665 0.0043273 map00230 -0.0156095 -0.0093708 0.0031324 0.0086992 0.0021521 0.0011728 map00061 0.0004217 0.0516216 0.0235965 0.0171687 0.0102742 0.0206076 map00520 -0.0247434 -0.0166100 -0.0087333 0.0097451 -0.0205867 0.0002832 map01523 -0.0288753 -0.0017635 -0.0180611 0.0096777 -0.0033037 -0.0015889 map00261 -0.0135380 -0.0208252 -0.0394820 0.0034446 0.0002638 0.0002357 map00220 0.0390311 -0.0041142 -0.0094118 0.0155509 0.0129550 -0.0005106 map04122 0.0251721 0.0364248 0.0266034 -0.0165145 0.0005282 -0.0292038 map00900 -0.0543135 0.0207238 -0.0068422 0.0148878 -0.0019026 -0.0103220 map00195 -0.0151042 -0.0163676 -0.0059496 0.0177512 0.0001915 0.0081522 map01200 -0.0005093 0.0011058 -0.0026596 -0.0030394 -0.0022685 0.0023667 map00020 0.0503736 0.0090413 -0.0271490 0.0007637 -0.0004649 0.0024199 map00780 0.0434006 0.0364782 0.0554446 0.0219899 -0.0024889 -0.0168606 map02060 -0.0517992 -0.0185152 -0.0024367 -0.0420692 -0.0283388 -0.0134162 map03018 0.0009676 -0.0012611 -0.0125008 -0.0157902 -0.0110413 0.0014149 map00660 0.0671820 -0.0002904 0.0039909 -0.0059795 0.0240361 0.0006598 map00720 -0.0003141 -0.0069450 -0.0112850 -0.0070867 -0.0061232 0.0028527 Site scores (weighted sums of species scores) PC1 PC2 PC3 PC4 PC5 PC6 C1 -0.24030 0.11750 0.23593 0.019409 -0.04915 -0.109100 C2 -0.11091 0.06256 -0.06143 -0.193618 -0.24032 0.092660 C3 -0.15632 0.07018 0.17926 -0.008288 0.00136 0.119096 T10 -0.01703 0.08763 0.15478 0.181077 0.26214 -0.005017 T11 0.28139 -0.13089 0.21587 -0.336233 0.10426 -0.095727 T12 -0.02007 0.03522 -0.18971 0.002692 -0.03191 -0.278597 TC1 0.19386 0.05674 -0.05786 0.225042 -0.05089 -0.238002 TC2 0.22804 -0.07587 0.08927 0.208030 -0.26538 0.242470 TC3 -0.11237 -0.22353 -0.15307 -0.064254 -0.01936 0.005841 TC4 -0.04401 0.03347 -0.08863 -0.048094 -0.10399 -0.063021 C5 0.10797 0.29416 -0.22921 -0.087940 0.19809 0.224471 T13 -0.11026 -0.32715 -0.09519 0.102176 0.19517 0.104927