Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C10443

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 1127
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24


Found at i:37 original size:26 final size:26

Alignment explanation


    Indices: 1--99  Score: 198
    Period size: 26  Copynumber: 3.8  Consensus size: 26

                                      
          1 GCAAATGCTGAGAAAAGATTCTAACC
          1 GCAAATGCTGAGAAAAGATTCTAACC

                                      
         27 GCAAATGCTGAGAAAAGATTCTAACC
          1 GCAAATGCTGAGAAAAGATTCTAACC

                                      
         53 GCAAATGCTGAGAAAAGATTCTAACC
          1 GCAAATGCTGAGAAAAGATTCTAACC

                                 
         79 GCAAATGCTGAGAAAAGATTC
          1 GCAAATGCTGAGAAAAGATTC

        100 ATCTACTATG


Statistics
Matches: 73,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   73  1.00

ACGTcount: A:0.42, C:0.18, G:0.20, T:0.19


Consensus pattern (26 bp):   
GCAAATGCTGAGAAAAGATTCTAACC

Left flanking sequence: None

Right flanking sequence: Indices 100 -- 599
ATCTACTATGTCTCAGCCCTCTTCTCCCCAGGAGAACTCTCTCGCGAACGACAACTCTGAGTTGC
TGAACCGTTCGACTGCCACCGGTCGAGCCAGCAACCAGGCGTCTTTCCAACAAAAATTTATTGGA
ACGACTGTACTAAACAGCACGTTTTCGAGCTCGAATTAATTTGCCCTTCGCGGGATTTGAACCTC
TTACCTGTTTTGGACATAGACCATCTGAGGATATTCCTAATTTTACAAATTTTCGACAAATACAA
ACCAAAAACTATAAATCCATTTGAAAAAGAAAAAAAAAATTAACATCGATAAAGCCCATTTCGTT
GCCTTGCTTCCTTGCGTTAATGGCACAGTAAAGCTCTACGCGTTGCGATGCGTTCGATTTTGATT
TGTTCGTGAGTAAAAGAGACGCATGCATATATAAACGCCCCCATTATTCTCACTGTCACCATGAC
GTGGTAAAAATAAGACACAAGTCACAAACTCTTAAGTTTTGGCCT



Done.