Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C10569
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 4471
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Found at i:1384 original size:5 final size:5
Alignment explanation
Indices: 1376--1414 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
1366 AGAGGAGAGG
*
1376 GGAGT GGAGT GGAGT GGAGT GGAGT GGAG- GGAGT TGAGT
1 GGAGT GGAGT GGAGT GGAGT GGAGT GGAGT GGAGT GGAGT
1415 CCTAATTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (5 bp):
GGAGT
Left flanking sequence: Indices 876 -- 1375
ATTGTGGCCCTTAGCGTCACAGATGGTAGGAGTGCCGTAGCCAGTGGCGGGTATTGGTCATTGGG
TAAACAGCAGTAGTATCACATATAGGGCAGAAATATGTAGGAATATGATTTTGTGTAACGTATTG
AGATCTAGTTCCTAAAAATACCTCGTAGTTAGATGGATACCGTATGTGGTGAGATGTATAAGCGC
GCGAGCCACCGCGGTGCAGCTCGAGCACATCCACCCGGACCACCTCCTCACCAACCACCAGCACC
ACGAGTGGTGCAGAGCACGAAAAACGTTTTCAAGACTACAACCGGATCAACGAGCGCAACAAGTT
TGTGCTCCAGTTGGTGTCGTTCGTTAACGACTGGTTTATTTCTAGTATGGAGAAGAAGGGGGGTG
GGCCATGGCCCGAACGTCTGGTTTGATTTGAGCGGCAGAGAGGTGGTGTAGAGTTAGAAGAATAA
GGAACGGAGGAGAAGGGGAGCGAGGGGAAGGTAGGAGAGGAGAGG
Right flanking sequence: Indices 1415 -- 1914
CCTAATTTGGAAAGCATTCGTAACTACAAAAGATGGCATCGTATCTACTCGTAAAAAGTGGGCTT
TGATTTGATGGTATATGGAAGCTGACAAAACCCTAAATTGCTCGTTCGCTTCCCAGACGTGGTGG
GCGGTTGCTATCATTGTATGCGCCAGATCATCTGTTGTACCTGCGTTGGTTCTCGTTGACGTAAC
GGGCACAAATTAACATAAGCGGCGACAAGCACGGCTGCCTCATTGGATCCAGGCTGTTTGAAGAA
CCCATTTTTTGCTTTCATATGGTCAAACACAAGGGCTACCGGTATCCCGTTGACGACAGTAAAGC
TAACTCATTAGTGGGCAACCTTAGTTTCCCCATCGTGGTGCTTGACGCTACCATAGTCCACAACT
TAAAGATCGGGGTCAAGCTCGGGCTAATCAGCCCCGCCAAAAGCGCCAAAACGGTCTCGATAATG
CTTGACCTGCCGCTGGAATTCACGTTTCCCCCCACCTCGCTTTTG
Done.