Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C10381

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 418

Length: 697
ACGTcount: A:0.29, C:0.20, G:0.37, T:0.14


Found at i:55 original size:39 final size:39

Alignment explanation


    Indices: 1--697  Score: 610
    Period size: 39  Copynumber: 17.1  Consensus size: 39

                                                   
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                 *           *     
         40 AGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTGGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                                   
         79 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                                   
        118 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

               *                 *           *     
        157 AGTGGGCTCAGAAGCGGAGTCAGAAGGACCAGTGGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                          *   *     *
        196 AGTAGGCTCAGAAGCGGAGTCGGAAGG---TGTGGGTGACG
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGT-AG-GACC

                  *         * *  *     *                     
        234 AG-ATGTCTC-----CAGTGTTGGAAGCACTCCCCTGAGTCGAGGACTC
          1 AGTA-GGCTCAGAAGCGGAGTCGGAAGGA----CC--AGT--AGGAC-C

                  *                        *         *           *   
        277 ACCGGTGGTTGACTCAG-AG-GGAGTAGCAGTAACCGTGA-TAGTCGGAGTGGTCAC
          1 A---GTAG--G-CTCAGAAGCGGAGT--C-GGAA--G-GACCAGT---A--GGAC-C

            *    **                             **           *  
        331 TGTAGTTTCAGTAA-CAGTGATGCAATCAGTTTCTGTGGGACCAGTAGGGCC
          1 AGTAGGCTCAG-AAGC-G-GA-G---TC-G-----GAAGGACCAGTAGGACC

                             *   *                 
        382 AGTAGGCTCAGAAGCGGTGTCCGAAGGACCAGTAGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                 *                 
        421 AGTAGGCTCAGAAGCGGAGTCCGAAGGACCAGTAGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                 *           *     
        460 AGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTGGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                 *           *     
        499 AGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTGGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                                   
        538 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

               *                             *     
        577 AGTGGGCTCAGAAGCGGAGTCGGAAGGACCAGTGGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                 *                 
        616 AGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                                 *                 
        655 AGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACC
          1 AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

                
        694 AGTA
          1 AGTA


Statistics
Matches: 551,  Mismatches: 57, Indels: 100
        0.78            0.08        0.14

Matches are distributed among these distances:
  33    9  0.02
  36    2  0.00
  37    3  0.01
  38    9  0.02
  39  455  0.83
  42    5  0.01
  43    3  0.01
  45    2  0.00
  46    2  0.00
  48    5  0.01
  49    4  0.01
  50    4  0.01
  51   17  0.03
  52   10  0.02
  53    1  0.00
  54    8  0.01
  55    3  0.01
  56    3  0.01
  57    5  0.01
  58    1  0.00

ACGTcount: A:0.29, C:0.20, G:0.37, T:0.14


Consensus pattern (39 bp):   
AGTAGGCTCAGAAGCGGAGTCGGAAGGACCAGTAGGACC

Left flanking sequence: None

Right flanking sequence: None


Done.