Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C10501

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 2293
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:2111 original size:16 final size:16

Alignment explanation


    Indices: 2090--2120  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       2080 TTTCTCCGCG

                   *        
       2090 CATTTCTTAACGTTGA
          1 CATTTCTCAACGTTGA

                           
       2106 CATTTCTCAACGTTG
          1 CATTTCTCAACGTTG

       2121 GAATAATAAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42


Consensus pattern (16 bp):   
CATTTCTCAACGTTGA

Left flanking sequence: Indices 1590 -- 2089
CGGTTTTCTTATCAGTCTTTATTAGTTTTGTCTAGTTATCAGGTTTATTGTATCCTTTTATTAGG
TGCGAAAGGGCCTAATTTATTGCATGTTACCCGAGTTTGGAGTCACTGAAGTAGCGAGAATGGCC
GCAACACACCCAGACACATCCCTAGTCATACGTGGGAGAAGCTGCCGCTGCCTCCAGTTTCGTAT
CATATGCACTGATCAATGCGGTAACCAATTTTCGGATGATAGCTGATAGTAATTACCGGTTTTAG
GCCGGTTTTAGGCATGAAACTAATTCTACGGTTTGTCTACTACAGCCGTCTGTCTTCATTCCGAA
TCACTCTTAAATTCGTACTATAGGTCGATCGACTGGAGCTTTGGTAGAAAACTGCGGAATTGTGG
ATAAGTTCAAACTAGAATTGTGAGCTACTGAGCGATCACGTTATTTGACTACTGATTGAGTTTCT
TGACAACAATCCCGCTTTTACACTTAATGCGGAAATTTCTCCGCG


Right flanking sequence: Indices 2121 -- 2293
GAATAATAAATTTACCCTTGAGCCGGAGTAATATGATCAGGAGAGAAACGTTTAATCGCAAAAGG
TAATTACATCGTTGGCGGAAAACATTTCAGCAGTAGTGAGCGGAAAATTTGCCTATATTCATGTC
GTTCTCCTGCATTCGTATTCAGTGTTAATACGCAAAAGATCGT


Done.