Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C10481

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 1853
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28


Found at i:814 original size:54 final size:54

Alignment explanation


    Indices: 743--884  Score: 212
    Period size: 54  Copynumber: 2.6  Consensus size: 54

        733 TTTTTAGTAG

                                                 *                
        743 GTTGTTCGTCGTTATCAGATTCGTCGTCCGACTGTGTTATCGGCGTCCTGATAA
          1 GTTGTTCGTCGTTATCAGATTCGTCGTCCGACTGTGTAATCGGCGTCCTGATAA

                        *                    *             *  *  *
        797 GTTGTTCGTCGTAATCAGATTCGTCGTCCGACTCTGTAATCGGCGTCTTGCTAG
          1 GTTGTTCGTCGTTATCAGATTCGTCGTCCGACTGTGTAATCGGCGTCCTGATAA

                    *       *                 
        851 GTTGTTCGCCGTTATCGGATTCGTCGTCCGACTG
          1 GTTGTTCGTCGTTATCAGATTCGTCGTCCGACTG

        885 GCGGTCCGAC


Statistics
Matches: 78,  Mismatches: 10, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  54   78  1.00

ACGTcount: A:0.13, C:0.24, G:0.27, T:0.36


Consensus pattern (54 bp):   
GTTGTTCGTCGTTATCAGATTCGTCGTCCGACTGTGTAATCGGCGTCCTGATAA

Left flanking sequence: Indices 243 -- 742
CCGGTGTCCCCTCATGCGACTACGATAGTCCACTAGCATCCCTCTAGTGCCCTCCTAATCGTATG
TTTTGCACAGTGGCCCGTATCTGGGCGTGTGTCTCATGTAAATTAGGAAGGACATAAGTCACAGT
ATCTTTTTCAACTTCTCATGGAAGTCAATCCGCCAAGATGAGCGCTAGGAATGACATAGTGACCT
TAGATTGTTACTTAGCATGGTTTAGCTCAACCGGCGGTTTTCAGATTCTCGTCATTTTGCCGTAA
GCAGGAGGTATATTGCGTCAACCTTCGAAACGAATTTCATTCTGAGTCCCTGCCCCCTTGATGGG
AGATACCGACGATTGTAGGGAAAGCCATACCGCGTAATTTGGTCTAATGCAGTGGCCACTCTCGT
TGATTGCTGTAGCAGCGAGTTCAACGGGTAGCTTGCGTTCAGTGAAATTACTAAAAATGCCTAAG
ATTCTGCCCCCATGGGGTCCTCATCTGTTCTCGGCTTTTTAGTAG


Right flanking sequence: Indices 885 -- 1384
GCGGTCCGACTCGTTCCGATGTTGAGCTAACCTTTCTTCAAACTTCATCTCAAGCTTCTTCACCT
CCAACATCTGTCGATGAGACGTTGGTAGTCTATCTAAATCGGCCATGACTCTCTGACCGTACGCT
TCGCGTTCCTCGTCAGTCATGCTGCGACCCAATGGTCTCACACCCGTGCGGGCCTCCTCGCGGAG
GTACCATATAAGATAATGAACAGCCCAAATCTGGTATCTTTTCCAGGGCGAGCTAACAATTAAGT
CTGCAAGCTCACCTTCAACTTCTGTCCAGAAAGGGAAAGTCTGTCTAAACCTTCTCACGCGGGAC
AAGTGGGAAAGCCGGTCCCGGGGGTCATTGTCAGGGGTATTCTTGACAAGTTGGTAATGCCCTGC
GATGATGTCAACAGGGGCTAACAAAAACCTCGTTATCAATATGTGGATAGCATCTTTTGGGGATG
TCGCTGCATCATAATCATCCATATAGTCGAGCCAATTCACCGTCT


Done.