Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold15
Parameters: 2 7 7 80 10 50 500
Length:  56466

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
997--1526
144
3.7
144
97
0
979
17
35
24
22
1.95
4960--5003
18
2.4
18
88
0
61
38
34
2
25
1.68
6405--6449
9
5.1
9
78
5
56
20
13
35
31
1.91
6405--6448
17
2.5
18
92
3
72
18
13
36
31
1.90
8375--8402
9
3.1
9
100
0
56
0
35
21
42
1.53
16383--16429
22
2.1
22
92
7
78
21
63
0
14
1.30
22418--22449
9
3.6
9
95
0
55
3
46
18
31
1.65
22890--22957
18
3.8
18
86
0
91
5
22
47
25
1.73
36771--36828
5
11.6
5
84
0
80
0
60
0
39
0.97
36773--36837
20
3.3
19
78
8
67
1
61
0
36
1.05
36973--37025
21
2.5
21
75
6
54
9
30
33
26
1.88
37691--37720
15
2.0
15
93
0
51
0
30
10
60
1.30
40886--40926
12
3.4
12
89
0
55
9
19
46
24
1.80
47328--47354
8
3.4
8
100
0
54
33
40
0
25
1.56
47302--47353
26
2.0
26
84
0
68
30
48
0
21
1.51
48293--48342
21
2.4
22
90
10
86
18
44
4
34
1.68
48300--48355
21
2.9
19
85
12
71
16
44
3
35
1.65
48994--49037
9
5.0
9
83
5
63
22
0
52
25
1.48
48994--49037
17
2.5
18
88
3
63
22
0
52
25
1.48
50610--50679
18
3.7
18
92
5
104
20
48
30
1
1.58
51518--51543
13
2.0
13
100
0
52
15
15
69
0
1.20
51634--51679
21
2.2
21
92
0
74
0
54
19
26
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52288--52324
12
3.3
12
78
21
53
35
35
24
5
1.78
52280--52333
21
2.6
21
87
0
81
33
37
25
3
1.74
53212--53245
12
2.7
13
90
4
52
32
0
38
29
1.58
53350--53392
14
3.4
13
87
12
63
0
9
53
37
1.33
53345--53374
11
2.7
11
100
0
60
0
6
56
36
1.26
54390--54433
15
2.9
15
96
0
79
15
47
2
34
1.58
55058--55086
12
2.5
12
94
5
51
55
0
37
6
1.27
55039--55450
49
8.6
45
71
17
158
47
3
32
16
1.64
55103--55450
15
21.7
15
72
16
154
47
3
32
16
1.63
55121--55178
14
3.9
14
74
12
62
46
1
34
17
1.58
55206--55455
18
15.3
18
72
17
115
47
3
32
16
1.63
55311--55397
29
2.9
29
75
16
79
45
5
34
13
1.68

Tables:   1

The End!