Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C10339
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 318
Length: 530
ACGTcount: A:0.18, C:0.32, G:0.34, T:0.16
Found at i:275 original size:128 final size:128
Alignment explanation
Indices: 47--291 Score: 427
Period size: 128 Copynumber: 1.9 Consensus size: 128
37 CAGACACTAG
*
47 CCACCCTGGTCACTGGACCTCTATGCTACTGTGATGGTAGCATTGAGCCACCCAGGGTACCCCAG
1 CCACCCCGGTCACTGGACCTCTATGCTACTGTGATGGTAGCATTGAGCCACCCAGGGTACCCCAG
* *
112 CCATGGCGCCTTGCTGGGTATATAGAGTATATAGAGGGGTGGCCACCGTCGGGCCACCCCACC
66 CCATGGCGCCTGGCTGGGTATATAGAGTACATAGAGGGGTGGCCACCGTCGGGCCACCCCACC
* * *
175 CCACCCCGGTCATTGGACCTCTATGCTACTGTGATGGTAGCCTTGAGCCACCCGGGGTACCCCAG
1 CCACCCCGGTCACTGGACCTCTATGCTACTGTGATGGTAGCATTGAGCCACCCAGGGTACCCCAG
*
240 CCATGGCGCCTGGCTGGGTATATAGAGTACATAGAGGGGTGGCCACTGTCGG
66 CCATGGCGCCTGGCTGGGTATATAGAGTACATAGAGGGGTGGCCACCGTCGG
292 CCATCCCGCC
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
128 110 1.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.21
Consensus pattern (128 bp):
CCACCCCGGTCACTGGACCTCTATGCTACTGTGATGGTAGCATTGAGCCACCCAGGGTACCCCAG
CCATGGCGCCTGGCTGGGTATATAGAGTACATAGAGGGGTGGCCACCGTCGGGCCACCCCACC
Left flanking sequence: Indices 1 -- 46
CCAGCCACCAACCACTCAGCCACAGCCTACTACTAACAGACACTAG
Right flanking sequence: Indices 292 -- 530
CCATCCCGCCGGGTGGGCCGACGACCACTCCGGGGTAGAAGGGTGGCTGACCACGGCCACCCTGG
TGTAGGGGATGGCTGACCACGGCCATCCTGGCGGGGAGGCCAACGGGTGGCCCCTCCGGTGTAGG
AGGGTGGCTGCGGCCGGCCCTGTGTAGGCGGGTGGGCCGACCACGGCCACCGCGCAGTAGGAGGC
GGCTACGGCCAGCGCTCTGTAGGCGGGTGGGCCGGTACGGTCAC
Done.